<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 08:45:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721528" ref_strand="+" ref_description="SGN-E721528 [FC14AG08]">
      <seq>aatcggccgaattacctcacttcaccgctgccgccgtcgccaccgtcaccgccaccgccaccgccaccgccaccgctgttgtagatcgacggcgtccaatcacagcctcgaacgaggacatttcattctctccacaatctctcatggccggaattgttacccctcatgtctcttcacaatccgccatcgttcacatcaatggcaaaaacacatttctctcgccccaaaaaaccctaaattttccaattctctccggctccggaggctcgtttctccgaatgagaagcacaaagcggctcgaggtgaagccgcttgctgtatcgcaaaacagttcagctacttgtgttgagttatcggatgatgttaaacggaataagagtccgattattgttattgataattatgatagcttcacttataatctctgtcagtatatgggagagcttggatgcagttttgaggtttatcgaaacgacgagctcactgtggatgagctgaaaaagaaaaatccaaggggaatactaatatcacctggaccaggtacacctcaagattcaggcatatcattgcaaactgtactggaacttggaccaacaattccgttatttggtgtttgtatgggtttgcaatgcatgggagaggcttttggaggaaaaattgtgcgatctccatatggggtgatgcacgggaaaagctcccctgtatattataacgaaggcggggaagatggtttatttgcagggctatcaaacccattcacagctggtagataccacagcctggtaatagacaaggacactttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10789" stop="443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10506" g_stop="10072" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10071" i_stop="9572" i_length="500">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9571" g_stop="9501" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="502" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9500" i_stop="8391" i_length="1110">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8390" g_stop="8353" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="540" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8352" i_stop="8255" i_length="98">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8254" g_stop="8144" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="651" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8143" i_stop="4888" i_length="3256">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4887" g_stop="4788" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="751" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4787" i_stop="796" i_length="3992">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="795" g_stop="743" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="804" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E721528" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10506" e_stop="10072"/>
          <exon e_start="9571" e_stop="9501"/>
          <exon e_start="8390" e_stop="8353"/>
          <exon e_start="8254" e_stop="8144"/>
          <exon e_start="4887" e_stop="4788"/>
          <exon e_start="795" e_stop="743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGGAAAACACTTCCACCTCACTTCACCGCTGCCGCCGTCGCCACCGTCACCGCCACCGCCACCGCCACCGCCACCGCTGTTGTAGATCGACGGCGTCCAATCACAGCCTCGAACGAGGACATTTCATTCTCTCCACAATCTCTCATGGCCGGAATTGTTACCCCTCATGTCTCTTCACAATCCGCCATCGTTCACATCAATGGCAAAAACACATTTCTCTCGCCCCAAAAAACCCTAGATTTTCCAATTCTCTCCGGCTCCGGAGGCTCGTTTCTCCGAATGAGAAGCACAAAGCGGCTCGAGGTGAAGCCGCTTGCTGTATCGCAGAACAGTTCAGCTACTTGTGTTGAGTTATCGGATGATGTTAAACGGAATAAGAGTCCGATTATTGTTATTGATAATTATGATAGCTTCACTTATAATCTCTGTCAGGTATGCTCAATTTTTCGAAGTTTGAATCAGAGAATTGAATTTTGAATATAGTGAAATGTGGAGATTGTTGTTTTAGTATTCCTTTTATTCGTTTTGTTTTATTCATGGAATTATAATGAATCTTCAAAATGTATAACATTGAGAAATGTACAGAATAGGTGAGGGTGTATCCGAAATAACTTCTATCTCTTGTGGGATTACGCTGCGTATGTTGTTATTGAGAAATGTACCAAATTAACTTAGTTTTTCTTGACTATTCTGCTTTGAGTTTTGTGATTTTGAAGTATTTAGAAGCTTGAGAATTGAACTGATTTTAGAAATAGAATTATTGCATCTGCTGAATAAGTTAGAAAACCAATTACTTTCTTAGTTTGTCGCTTCATTTTTGTTAATAGTTTGAAGTCTATTGAAGTTGGAGTTTGATATTGATTTTGGAATATTGATAATTGCGGACAATTGTATTTAAGGTGTTTCTTAACTTACTCTTGTTTTCCCCGTAGTATATGGGAGAGCTTGGATGCAGTTTTGAGGTTTATCGAAACGACGAGCTCACTGTGGATGAGCTGAAGAAGTAAGTTACAAAGTTAGTTATTGTTTATAGAATTTTTTTTTGGTCCAGCTGTTGTAGTATAGTAACAAATTCACCTTCACCATGCTGGTATGGGGATCATCCACCTTTATGTTAGACTTGAATTCTATAAAATTTATATTTTGATACCTTTGGTTTCAGCACTTCTATCTTCTCTAGTTAACTCATGATCGTTAGATTAAGGTTGGATACGTGACAGGGGTGATAACTTTGTTGCTTCCTGAGAGATGATAACCTCTTTGTAATGCTTGCTCTTCTTGATGTTTTTTTGTTAATGATATCCTTCTTATTTCATCAAAAAGGCTGCACACTCGTTCTCTAATTTTGATTGGTCTTTTGTATTTTCTGAATTCGCTGCCATGATTACATTCAAATTGAATAAATCTATTGGTAGAGATGGAGACTGCCGCAGAACTGAAAATTTGAGGTTGCACATTGAGTGTGTTAGAAATTGTATGTCTGGATGATAACTGCATAATTATCAATTCTGATGAGCTGTAATTTCTTGGGTGCATAATCTTATTTTAGTAAATCTAACAGAAGATAGTGAAAAATAATTATAATAATATAATGCAATGGTTTGAGAGTGGAAGTATAAAGGAAAAAAGATTACTCATTAATCAAATGCTTATTTTTAGCTCGTTTTTCTTTACTCGTTAGTTAGAGTGGTGATAAGCAGCTCCCTAGTTGAATTACACCAACAGCCTCCTCTCTTTTAATTAACATTATAGATAAGAAAAGAAAAAAGGACAGATGATTTGCTAACTTTTTCATAGATGAGATGCATGTGCACCATACTAGGTCCATTTCTAAGGCAAAAGATCCATTTTTTTCTTCATCAGGTTAGTTTCATATGATTTAGAGGGGAACTGATCTGTGAATAAAATGTTTATTGATATTGGTGAATCATTATGAGATAAAGGCTATAAAGTAAATTTAATTGCAAAGATAATATGATTTTTTTATTGGTTGAAAATTTAAGGGGATTTTGTGTTTTTGTTTAGACCTGGCAAGCAATTAGTGTTCTTTATTTTACTCCGCAGACCTGATTAAGTTAATACTATGTTGTTTTTTGAAAAAAATATTTTGTAGGAAAAATCCAAGGGGAATACTAATATCACCTGGACCAGGTAGGAAGACTCACCCAAATATATCAAGTTACCAGTTTCACATATATAGAATGTATGGAAAGATCAGTACTTTCAATCTTATTTTATTCTGGGAATAGGTACACCTCAAGATTCAGGCATATCATTGCAAACTGTACTGGAACTTGGACCAACAATTCCGTTATTTGGTGTTTGTATGGGTTTGCAATGCATGGGAGAGGCTTTTGGAGGTTTGTTTTTGAATCAACTATATTTGGTGCTTTTGTTTCTCAATTAGTTTGTCCTATCTTATGAATTTGCTTCTCTTAAATTTGAAAATAAAAAGAAAATAGCTTTTCAAGTTCTTTAAAAAATTGGGTCATTTCTTTTTATCTTTTTAAGGCTTGGTGGATAGAATTACCAGGTACCTGTGGTAGTGGGACATGGTAGGTACCTCATTGTCCCTCTGCATTATCAGACGTCGCCAGGATTTTATCCCAGAAAAGTTTATTGTCACGTGAATTATATATATATATATAGACATTTTGAAGAATGGTGGTTATAAAAAAAATATTGTGAAGAATGGTGGTTGTCAAGAAAATGTACATTGTGAAGAATGGTGGTTATGAAAAAAAATATACATTGTGAAGAATGGTAGATGCTTCTGTAAATCGTCAGATATGTACCCATATGTACACACTTAAGTATCTTCAGTTTTGAGGTATTAGGTAAAGTAATTACATCGCAAAATTTGGTTTTGTTTGGTTTCTCTTTTCATTTCTTATATTTTGAACTTTTATAGTAATGTTGGCATTATTTATACTTGAAAGCACCTAAAAGAAAATAGTAACCTTGATGTTATTGTAGTAGTTCTCCTCCTCAAAGATAGATTATGACTCTAATAGATAAGGTTATGCTATTTAATGCATCTTTGTTTGGTTTTAGGTGTTTGTTCATTTATACTATTTCTTATATATCTGTATAATCGAATCTAGATTAAAAGATTTTAAATGGTACTATAAATAGAATCCGCATCTTAAATGAGTTTTTGTCCTTTTCTTTTTCAATGAGTGTAAAATTGTGCAACTTATAGGAAGGAGGACATTTTAATTGAATTCTTTTTTCAGGCTTTCTTGTTTTACACCCAAATAGTTGATTATACAAATAAAGAAACAAGAACAATAATTGTCTTAAAAATTATTCAAAATAATAATGATAGATGGTGATTATGGAACTAACACCAAAATAAATTACATGAGTAGATATTCTTACACACACGGATCTGTCTTGGTGCCAGTTTTAGTAATACTTACCTTAGGATTACCTTTACTTATCCAAAAAGAAGAAGAGACGAATAGCATAAGTATGGAGTAGCAAATAACATATTTTTTTTCTTTTCAATCAACAAGGGTATTGTCTAAAGGTATAATTATAAACAAGGATTCATCCATGTCAAAGGACACACACATCATCGCGTATAGGAGTTTGCTCATATTGCCATTCCCAAACCCGGATAAGGGAAGAGTGTTGCGATAGGATAACAACTAGTGTAAAACTAGTGACTAGTTAATTTATGATGAACTCACGATACAAAGTACATTTCAAATGGAGCGAAGTAGATAATGAACAATTATATTGCCTACCTCAATTAGCTTGAGATTGAGGCATAGTAGTAGTTAAAACCAAATGCTTGTTTTAGATTGAAGCAATATATGCAACTTTTGGTACAATCTACCATAATTCCCACAGGATATGCATTTGCTCCAAAAATCTAGTGTTTAATCGTTATAATACAATGAAATTGAAGAAAATGAAATACCTTGTATATACAAATTTCTATTGCCACCCCTTTCCTTTTATCTCTTTCCAAGATTGTCCTCTTGATCATGATTTTGTCCTCGAGCTTTCAACATAATCTCTCATAATTTAGGTTTATAATTCTACTTTTAGTTGAATTCCCCCATCTGTATCTACACATGATTCCATATCCCCGAATTTTAAATTTAGGTCACAGAGAATCCGACCTCTAGATCAACATCCGTATCGGACACCCGCACCTGTGTCCGAGCAACTTAGCTTCTTGATGGCATGGTTATAACATACACTTATCATGGAAGGTTTATATGGATATGTGTTATAGGATATATATATCACCTAGTGGATCCAACAACTTCTTAATTTTAAAATATAAGCATTAAGATACATCCTATTAGGAGTACAATGCAGCAGTTCCATATGATCAAAAGGACAATCTTGGAAGGAGATAAAAGGAAAGGGAGTGGCAATAGACATCCTGTTAGGAGTACTCCTACTTCTTATTTTTGGTGTAAAGAGGAAGGGATGGAAGAAGCTGCACAAATTTTGGACTTTATAGGCTCTTTGTATTCTATTAGCCTTTTTGTTTCGTCTCTTGTTGAAAACCAATTTTTGGAGGTCTCCAGCATATCCTTAATGTTGATGAATACAAAATTATCTTCTTTTTTTTTAAAAAAAAGAAAACTTGTTAAAGGTTCTGTGATTTAAGAGGGAACAAATTGAAGGTGTTTGATTGACCTCTTTTCAGGTTATTCCATGTATGGTAATGGCTACGGACGGAGGGAACACTGAAATATGTAACGATTTTAAAGGTTCAATTGGTACAAAATGAATTTCAGATGCATTTATTGACATCAAGTTTGTAAAAAGAACCAAATTCTTGTTGGTGATTATTTATATTAAAATAATTGAATATAAATAATCACCAATAAGAATTTGGTTCTTTTACGAACTTAATGTCAATAAATGATCTGAAATTCATTTTGTCCAATTGAACCATTAAAAACTGTTAGATATTTCAGTGTTCCCTCCTGTTCGTAGCAATTACCATATATGAATAATCTGAAAAGAGGTCAATCAAACACCTTCAATTTGTTTCCTCTTAAATCACAATTATCTTTTTCTTTTTGATAAAGATAATATTGTATTCATCAGCATTAAGGATATGCTGGAGACCTCCAAAAATTGGTTAAAAAAACAAAAAGGCTAATAGATTACAAGAGCCTATAAAATCCAAAATTTGTGCAGCTTCTTCTACCCCTTCCTCTCTATACCAAAAATAAGAAGTCCTCTGTGACTTCTGCATTGTACTCCTAATAGGATGTCTCTTGGAAACATATTTATGCCCCTTCCAAAAATGGAAAAGGAACTGAACACAATATAGACCTTCATTTACTGGAAGTTCACTTTTAAGACTGAAATTAGTCCTCTAGTGTCTTGAATGAGGACCTGTTCAGAGCATAAATTTTCTGTTGCTGACTAGCTAGAGCAGAAACATAGCACACTAGTAAAAAATCATAATGCTTTAAAGAGAACTAGTGAGTTGTGCAAAAGAACAGTTGAAAAGGTAAAGTTTTGGGTATTGTTAAGTTGACGACCAAAAGCTCTACTTTCTTCATTCTTTTTATTCAACTATTCAATTGTGTATTCATCACACTTAATCCTCCTTAATGTGAATTTATCCCATTGCAGGAAAAATTGTGCGATCTCCATATGGGGTGATGCACGGGAAAAGCTCCCCTGTATATTATAACGAAGGCGGGGAAGATGGTTTATTTGCAGGGCTATCAAAGTAAGCTCTTGTCTATCTGATAATTGATAGAAACTTGTTTTAACAAATTACGATTTGGTCTTTCAGATTATTTCTGTATCAACATAAGTGAATTTTTCCATCGAAAGTTAAGATCATTCCTGCGGATTGCAAATTAGTTGTTTGCACTTGATCCGTGCTAGATCACCCTGTACAATTTGATTTGGTGAAGTTCAAAGACTACAAAACAACAAAGAAGGTGTTTCCGGCTTTCCGCTAGGCTAACAAAAGCCTGTATATTAGATACTCAATGACATGGCAGCACAATCTCACATTCAGCTTGATTGTGTGACTGGGGTTGTCAACACCACCTTCTTGACTTCATGACCATCTTTCTCTGCCTGACTTCAGAGATACATGGCTGAGTAGGTGGTTAAACAGGAAGGGGCTGTGGTGCTTTGCCTTTAAGATTAATTAGTGTTTCACGCTGCTGCTTCAATCGTGCTGTTTTTCCTATTTTTCCCATTATAGCCAATAAGAAATCTGATGATTTCACCGACACCCCAAGCCGTTCAATCTTCAGTGTGCTTATGTGGCTAATCTCTTCTGATGTTTCTTTCTTTGGAGTTTGGACCAGCAAAAGTCAAGCTTTTAGAATGGATTCAATGGTGGGTTTCTCTCAAGGTGTCCTACTTGAGCATTGACAGTAGTATGCGAAGTGTCTGAACTCAAAATTTTCAGTCTGGTATAGAAATACTCGGGTGGTTTGCTTTAAATTTTTGAGCGACCATCCAATGCCAATGGTTTGTGCAAAGATTAAACCTCACATCGGAAGTTTCAGTGTCTCTCTGTGAGTTCTCCTTCAACACTAGCAATAACTGGGTTGAGCATCCCGCTGGAGGAAATTCAATAAAGTTCTTGCTTTCCTTGAAACATAGATCACAACCAGAGATGCCAAAAGCAGTAAATCTGCAGAAACTCCAGTGATAACTGCGTTATATTGTCAAATTTCTGGGACTTCATTCTCCGATTCTATTTCAATGCCCAAACTGCAGGTTTCAAGTTCTGCGTCACGATCTTCCAACCTCCAGTTATTTCTTCTTGTCCTATTAATTGTGTCTTTGATAATTTGTCTTCTGTGTTGATTTCCTTTGAGGTTTTCTCGACCTGCTCAACCTTGTAGTCAGCTTCTGCTTGCTCAAATTTGTAGCTTGTTAGAGTTCACAGCTCATTTGTTTGCACAAGTATGTGAAAGCTCATCAAGCACAATGCTTCAAGGTTTGATGGTCTCTGGTTCTCTTGACTAGGATCCTTCATATCAAGACTCTTGACCTCTTTCATCTGGTCATCTGGTGTCAGGACCTTCAAGCTCTTCTTTATCCACTTTACTGGAACTAGTAACTTCACCACCAGCTTTTGGTGTGGTTTCCTCCACTCCATCACCTTGTACACTCTGGGTAACAACGTCTGTGCTGTCGATATCAATATCTGTAATTCAACCCCTTCCAGTTCGACAGTTTCCACCTTCAAGAACCCCACAATATCTTCAACAAACTTGACAGTCGCAAGTTCATAATTAGTCTCTCTCCAACTCAACTCCAGAAAACCACTTTGAGAATACTCTGGTCGTTCCAGAATGCATTTCAACAAAAACATACCTAGTGTAATCCCACAAGTGGGGTATGGGGAGGGTTGGATGTCCAGGGACTTTACCCTAGCTTCTGGGGTAGAGAGGGTGTCCCCGATAGACCCTCGGCATGGCACAAAATTTAGACTAGCAATAAGGATTAGGAATAATAGAAGATTGAGGAATATCTTCACAGGATATATGAGTGGCCTACTGGTGGTGAAGGGCAGGATAGGATAATACAGAGGGAGAGTGCATTACCAGGAATTTCAAAATGGGTACTGAAGGTGATGCCGAATGTTGGGCCCAATGTGGGATATCAAAAAGACTAGGGAACTAACTTCCTTCTCAGCTCATGGTGTGCATAATGCAATTCTAATGATAGCTAATTTTAAAAAATCTCTGAATTGATATAACCCCTTGTTGATATTACTAGTCTTAGCACCACTTTCTAGAAAATTCCCAAGAGAAACTAAATAAACAACCTAAGCTTAAAATTGAAAGTTTTACCTTTTCAATGGACTAGGACTATGTGAAGAGTGGGAGAGGAAGATAATTGAATGTTACTTAGGCTACTGGAGATAAACTGCACCATTAAAGGTTTGTTGGGGTAAACCTCCTAAAATTGAAGTGTCAGCTTAAATGTACCTCCATCCCGAGGTGTGTAATCAGGTACTTCCTCTCCCATAAATTTCTTGAAGATCAGCTCCAAAGATGTTCTTGTGAATCACGTGGTCGGTGCCTGAAGTAGCCATGAAATTCGTTCATAAATATGAGTTACATTTCTTTATCGCCCTCAACCCCACCCCCACCCCCCCAAATCTTGGTTTTCTGGCAGATTTGAGGAGTCTTGAGCTTGCTGCAGTGACCCTTGATTATCATTAGATTCCTCAGAATCAAGAGGACTGCCTTGATTGAATCTTATAGCACCATTGTCATATCTTCTCAAGCTTTCTTGGTGAAGAAAGATCCCCCAACACCTATTTGGCTGGTAGGATAGATGCTTAGGCCTAGGGGAGAGGTAGTTATGGTTTATGGAAGAATCGACACTAGTGTTGTTTTATTGATCATCGCCTGATTCAGAGGCGTCCCTAAGGAAGAAATAGCTTTTCTTCCAGAACGATGAGTAGTTGAACTCAAGGAGCTGGTTTTAGATCCAAGATTGGAGGCCTTGGGGGACGGCTTTGACAAGAGCTGGAAATTTCTTTCCTTTTAGCGATTTTTCTTTTTCTTGGATATAGTTTTTCTTTGTTACTAAGAGAAGATTTTGAAGATACTTCCAGAGTTGGGATTGAACTTAATTATGTCAATTTCGGTTAGCATTTATCCAAAGCTTCTTTCCTCTTTGACCAGATTGCCTCTTAGGTCATTTCTTTCCTGATTCACCTCCTTTCTTTTTTAATTCCAAGTCAAACTTTTGAAAGCAGGCTATCATATTTAAATGATGCTGACACTCTTCGTAAGTCGAGGTGCAATTTTTGTAATTTACAGTGTAGGCTCGTTCATTCAATTAAGCATGTATCTATGCCTGCTCTCTTTAGTGTTATGGTCTCACATAAGTGCAAGTTTTTTCTGCGTTTACTATTTAGTGTTTGTCTCAAGCAATATTGACGAAAAATCTTTGACATATGTGGCAACATAGGTAGACCAGAGTTTTGATTTTGTGTTCTGGATTTTAGAAAAGGATTAACTTACTGCATTCTTGATAAATTATTTATACATGTTGAATGGGTTTCTTAGTGCAACAGCAACTAACCAGCGTAGTCCCATAAGCATGCTGCGTCTGGGGAGGGTAGAGTGCACACAGACTTAATTCCTATCTTGAGGAGGGGATTTCTTAATTCAAATCCATGATTTTGGCCAAAGTTAGCGGGTTTTGCCGAACCCACAGCTAAAACTCTAGCTCCACCTATGTTTAGCTAAAGAATCATGTCCATTTTATAGAATAGTTGATGTTGACCTAATACAAAAATGAAAGAGTTTAAGTGTTGGGACATGTGGAAGCACGTTGATCATGCAAGTGTCATGCGCAGTTCCAATTTGCTGGGATCTTCCCTCACTTGTATGCTTGTAATATTTTCTCATCAACTACTCATTCACTTCCACCCACTTAATTACTTCAGTTGAATTTTGTTTTGACCTTGTATATATTAAGTCTAGCAAATATCGGAGCCACTACCACTATCTTAATGTAGGTAGAACTCTTCATCACCCTATAATTATCATGGTAAGACTAATAATATGTTATGGATGTCAGAATTGTCTGGTTGGAGCACGTCTACAAGTGAGCACATATAAAACTACTATAGAGATCCATGTCTATCCATTGCAGATTGTTTAATCTGTGGTCTTCTAAAAGCTTAGTCATATTTATGTTGACATTTTGATAATACCTTTTTCATTTCAGCCCATTCACAGCTGGTAGATACCACAGCCTGGTAATAGACAAGGACACTTTCC</genome_strand>
        <mrna_strand>AATCGGCCGA-A-TT--ACCTCACTTCACCGCTGCCGCCGTCGCCACCGTCACCGCCACCGCCACCGCCACCGCCACCGCTGTTGTAGATCGACGGCGTCCAATCACAGCCTCGAACGAGGACATTTCATTCTCTCCACAATCTCTCATGGCCGGAATTGTTACCCCTCATGTCTCTTCACAATCCGCCATCGTTCACATCAATGGCAAAAACACATTTCTCTCGCCCCAAAAAACCCTAAATTTTCCAATTCTCTCCGGCTCCGGAGGCTCGTTTCTCCGAATGAGAAGCACAAAGCGGCTCGAGGTGAAGCCGCTTGCTGTATCGCAAAACAGTTCAGCTACTTGTGTTGAGTTATCGGATGATGTTAAACGGAATAAGAGTCCGATTATTGTTATTGATAATTATGATAGCTTCACTTATAATCTCTGTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGGGAGAGCTTGGATGCAGTTTTGAGGTTTATCGAAACGACGAGCTCACTGTGGATGAGCTGAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCAAGGGGAATACTAATATCACCTGGACCAG..................................................................................................GTACACCTCAAGATTCAGGCATATCATTGCAAACTGTACTGGAACTTGGACCAACAATTCCGTTATTTGGTGTTTGTATGGGTTTGCAATGCATGGGAGAGGCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATTGTGCGATCTCCATATGGGGTGATGCACGGGAAAAGCTCCCCTGTATATTATAACGAAGGCGGGGAAGATGGTTTATTTGCAGGGCTATCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCATTCACAGCTGGTAGATACCACAGCCTGGTAATAGACAAGGACACTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698410" ref_strand="+" ref_description="SGN-E698410 [FA06AH06]">
      <seq>ccgcttaaacactctcccgctgtcttcggaaaacacttccacctcacttcaccgctgccgccgtcgccaccgtcaccgccaccgccaccgccaccgccaccgctgttgtagatcgacggcgtccaatcacagcctcgaacgaggacatttcattctctccacaatctctcatggccggaattgttacccctcatgtctcttcacaatccgccatcgttcacatcaatggcaaaaacacatttctctcgccccaaaaaaccctagattttccaattctctccggctccggaggctcgtttctccgaatgagaagcacaaagcggctcgaggtgaagccgcttgctgtatcgcagaacagttcagctacttgtgttgagttatcggatgatgttaaacggaataagagtccgattattgttattgataattatgatagcttcacttataatctctgtcagtatatgggagagcttggatgcagttttgaggtttatcgaaacgacgagctcactgtggatgagctgaagaagaaaaatccaaggggaatactaatatcacctggaccaggtacacctcaagattcaggcatatcattgcaaactgtactggaacttggaccaacaattccgttatttggtgtttgtatgggtttgcaatgcatggcagaggcttttggaggaaaaattgtgcgatctccatatggggtgatgcacgggaaaaagctcccctgtatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10824" stop="4532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10525" g_stop="10072" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="458" r_length="454" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10071" i_stop="9572" i_length="500">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9571" g_stop="9501" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="529" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9500" i_stop="8391" i_length="1110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8390" g_stop="8353" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="567" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8352" i_stop="8255" i_length="98">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8254" g_stop="8144" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="678" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8143" i_stop="4888" i_length="3256">
            <donor d_prob="0.902" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4887" g_stop="4832" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="735" r_length="57" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E698410" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10525" e_stop="10072"/>
          <exon e_start="9571" e_stop="9501"/>
          <exon e_start="8390" e_stop="8353"/>
          <exon e_start="8254" e_stop="8144"/>
          <exon e_start="4887" e_stop="4832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACACTCTCCCGCTGTCTTCGGAAAACACTTCCACCTCACTTCACCGCTGCCGCCGTCGCCACCGTCACCGCCACCGCCACCGCCACCGCCACCGCTGTTGTAGATCGACGGCGTCCAATCACAGCCTCGAACGAGGACATTTCATTCTCTCCACAATCTCTCATGGCCGGAATTGTTACCCCTCATGTCTCTTCACAATCCGCCATCGTTCACATCAATGGCAAAAACACATTTCTCTCGCCCCAAAAAACCCTAGATTTTCCAATTCTCTCCGGCTCCGGAGGCTCGTTTCTCCGAATGAGAAGCACAAAGCGGCTCGAGGTGAAGCCGCTTGCTGTATCGCAGAACAGTTCAGCTACTTGTGTTGAGTTATCGGATGATGTTAAACGGAATAAGAGTCCGATTATTGTTATTGATAATTATGATAGCTTCACTTATAATCTCTGTCAGGTATGCTCAATTTTTCGAAGTTTGAATCAGAGAATTGAATTTTGAATATAGTGAAATGTGGAGATTGTTGTTTTAGTATTCCTTTTATTCGTTTTGTTTTATTCATGGAATTATAATGAATCTTCAAAATGTATAACATTGAGAAATGTACAGAATAGGTGAGGGTGTATCCGAAATAACTTCTATCTCTTGTGGGATTACGCTGCGTATGTTGTTATTGAGAAATGTACCAAATTAACTTAGTTTTTCTTGACTATTCTGCTTTGAGTTTTGTGATTTTGAAGTATTTAGAAGCTTGAGAATTGAACTGATTTTAGAAATAGAATTATTGCATCTGCTGAATAAGTTAGAAAACCAATTACTTTCTTAGTTTGTCGCTTCATTTTTGTTAATAGTTTGAAGTCTATTGAAGTTGGAGTTTGATATTGATTTTGGAATATTGATAATTGCGGACAATTGTATTTAAGGTGTTTCTTAACTTACTCTTGTTTTCCCCGTAGTATATGGGAGAGCTTGGATGCAGTTTTGAGGTTTATCGAAACGACGAGCTCACTGTGGATGAGCTGAAGAAGTAAGTTACAAAGTTAGTTATTGTTTATAGAATTTTTTTTTGGTCCAGCTGTTGTAGTATAGTAACAAATTCACCTTCACCATGCTGGTATGGGGATCATCCACCTTTATGTTAGACTTGAATTCTATAAAATTTATATTTTGATACCTTTGGTTTCAGCACTTCTATCTTCTCTAGTTAACTCATGATCGTTAGATTAAGGTTGGATACGTGACAGGGGTGATAACTTTGTTGCTTCCTGAGAGATGATAACCTCTTTGTAATGCTTGCTCTTCTTGATGTTTTTTTGTTAATGATATCCTTCTTATTTCATCAAAAAGGCTGCACACTCGTTCTCTAATTTTGATTGGTCTTTTGTATTTTCTGAATTCGCTGCCATGATTACATTCAAATTGAATAAATCTATTGGTAGAGATGGAGACTGCCGCAGAACTGAAAATTTGAGGTTGCACATTGAGTGTGTTAGAAATTGTATGTCTGGATGATAACTGCATAATTATCAATTCTGATGAGCTGTAATTTCTTGGGTGCATAATCTTATTTTAGTAAATCTAACAGAAGATAGTGAAAAATAATTATAATAATATAATGCAATGGTTTGAGAGTGGAAGTATAAAGGAAAAAAGATTACTCATTAATCAAATGCTTATTTTTAGCTCGTTTTTCTTTACTCGTTAGTTAGAGTGGTGATAAGCAGCTCCCTAGTTGAATTACACCAACAGCCTCCTCTCTTTTAATTAACATTATAGATAAGAAAAGAAAAAAGGACAGATGATTTGCTAACTTTTTCATAGATGAGATGCATGTGCACCATACTAGGTCCATTTCTAAGGCAAAAGATCCATTTTTTTCTTCATCAGGTTAGTTTCATATGATTTAGAGGGGAACTGATCTGTGAATAAAATGTTTATTGATATTGGTGAATCATTATGAGATAAAGGCTATAAAGTAAATTTAATTGCAAAGATAATATGATTTTTTTATTGGTTGAAAATTTAAGGGGATTTTGTGTTTTTGTTTAGACCTGGCAAGCAATTAGTGTTCTTTATTTTACTCCGCAGACCTGATTAAGTTAATACTATGTTGTTTTTTGAAAAAAATATTTTGTAGGAAAAATCCAAGGGGAATACTAATATCACCTGGACCAGGTAGGAAGACTCACCCAAATATATCAAGTTACCAGTTTCACATATATAGAATGTATGGAAAGATCAGTACTTTCAATCTTATTTTATTCTGGGAATAGGTACACCTCAAGATTCAGGCATATCATTGCAAACTGTACTGGAACTTGGACCAACAATTCCGTTATTTGGTGTTTGTATGGGTTTGCAATGCATGGGAGAGGCTTTTGGAGGTTTGTTTTTGAATCAACTATATTTGGTGCTTTTGTTTCTCAATTAGTTTGTCCTATCTTATGAATTTGCTTCTCTTAAATTTGAAAATAAAAAGAAAATAGCTTTTCAAGTTCTTTAAAAAATTGGGTCATTTCTTTTTATCTTTTTAAGGCTTGGTGGATAGAATTACCAGGTACCTGTGGTAGTGGGACATGGTAGGTACCTCATTGTCCCTCTGCATTATCAGACGTCGCCAGGATTTTATCCCAGAAAAGTTTATTGTCACGTGAATTATATATATATATATAGACATTTTGAAGAATGGTGGTTATAAAAAAAATATTGTGAAGAATGGTGGTTGTCAAGAAAATGTACATTGTGAAGAATGGTGGTTATGAAAAAAAATATACATTGTGAAGAATGGTAGATGCTTCTGTAAATCGTCAGATATGTACCCATATGTACACACTTAAGTATCTTCAGTTTTGAGGTATTAGGTAAAGTAATTACATCGCAAAATTTGGTTTTGTTTGGTTTCTCTTTTCATTTCTTATATTTTGAACTTTTATAGTAATGTTGGCATTATTTATACTTGAAAGCACCTAAAAGAAAATAGTAACCTTGATGTTATTGTAGTAGTTCTCCTCCTCAAAGATAGATTATGACTCTAATAGATAAGGTTATGCTATTTAATGCATCTTTGTTTGGTTTTAGGTGTTTGTTCATTTATACTATTTCTTATATATCTGTATAATCGAATCTAGATTAAAAGATTTTAAATGGTACTATAAATAGAATCCGCATCTTAAATGAGTTTTTGTCCTTTTCTTTTTCAATGAGTGTAAAATTGTGCAACTTATAGGAAGGAGGACATTTTAATTGAATTCTTTTTTCAGGCTTTCTTGTTTTACACCCAAATAGTTGATTATACAAATAAAGAAACAAGAACAATAATTGTCTTAAAAATTATTCAAAATAATAATGATAGATGGTGATTATGGAACTAACACCAAAATAAATTACATGAGTAGATATTCTTACACACACGGATCTGTCTTGGTGCCAGTTTTAGTAATACTTACCTTAGGATTACCTTTACTTATCCAAAAAGAAGAAGAGACGAATAGCATAAGTATGGAGTAGCAAATAACATATTTTTTTTCTTTTCAATCAACAAGGGTATTGTCTAAAGGTATAATTATAAACAAGGATTCATCCATGTCAAAGGACACACACATCATCGCGTATAGGAGTTTGCTCATATTGCCATTCCCAAACCCGGATAAGGGAAGAGTGTTGCGATAGGATAACAACTAGTGTAAAACTAGTGACTAGTTAATTTATGATGAACTCACGATACAAAGTACATTTCAAATGGAGCGAAGTAGATAATGAACAATTATATTGCCTACCTCAATTAGCTTGAGATTGAGGCATAGTAGTAGTTAAAACCAAATGCTTGTTTTAGATTGAAGCAATATATGCAACTTTTGGTACAATCTACCATAATTCCCACAGGATATGCATTTGCTCCAAAAATCTAGTGTTTAATCGTTATAATACAATGAAATTGAAGAAAATGAAATACCTTGTATATACAAATTTCTATTGCCACCCCTTTCCTTTTATCTCTTTCCAAGATTGTCCTCTTGATCATGATTTTGTCCTCGAGCTTTCAACATAATCTCTCATAATTTAGGTTTATAATTCTACTTTTAGTTGAATTCCCCCATCTGTATCTACACATGATTCCATATCCCCGAATTTTAAATTTAGGTCACAGAGAATCCGACCTCTAGATCAACATCCGTATCGGACACCCGCACCTGTGTCCGAGCAACTTAGCTTCTTGATGGCATGGTTATAACATACACTTATCATGGAAGGTTTATATGGATATGTGTTATAGGATATATATATCACCTAGTGGATCCAACAACTTCTTAATTTTAAAATATAAGCATTAAGATACATCCTATTAGGAGTACAATGCAGCAGTTCCATATGATCAAAAGGACAATCTTGGAAGGAGATAAAAGGAAAGGGAGTGGCAATAGACATCCTGTTAGGAGTACTCCTACTTCTTATTTTTGGTGTAAAGAGGAAGGGATGGAAGAAGCTGCACAAATTTTGGACTTTATAGGCTCTTTGTATTCTATTAGCCTTTTTGTTTCGTCTCTTGTTGAAAACCAATTTTTGGAGGTCTCCAGCATATCCTTAATGTTGATGAATACAAAATTATCTTCTTTTTTTTTAAAAAAAAGAAAACTTGTTAAAGGTTCTGTGATTTAAGAGGGAACAAATTGAAGGTGTTTGATTGACCTCTTTTCAGGTTATTCCATGTATGGTAATGGCTACGGACGGAGGGAACACTGAAATATGTAACGATTTTAAAGGTTCAATTGGTACAAAATGAATTTCAGATGCATTTATTGACATCAAGTTTGTAAAAAGAACCAAATTCTTGTTGGTGATTATTTATATTAAAATAATTGAATATAAATAATCACCAATAAGAATTTGGTTCTTTTACGAACTTAATGTCAATAAATGATCTGAAATTCATTTTGTCCAATTGAACCATTAAAAACTGTTAGATATTTCAGTGTTCCCTCCTGTTCGTAGCAATTACCATATATGAATAATCTGAAAAGAGGTCAATCAAACACCTTCAATTTGTTTCCTCTTAAATCACAATTATCTTTTTCTTTTTGATAAAGATAATATTGTATTCATCAGCATTAAGGATATGCTGGAGACCTCCAAAAATTGGTTAAAAAAACAAAAAGGCTAATAGATTACAAGAGCCTATAAAATCCAAAATTTGTGCAGCTTCTTCTACCCCTTCCTCTCTATACCAAAAATAAGAAGTCCTCTGTGACTTCTGCATTGTACTCCTAATAGGATGTCTCTTGGAAACATATTTATGCCCCTTCCAAAAATGGAAAAGGAACTGAACACAATATAGACCTTCATTTACTGGAAGTTCACTTTTAAGACTGAAATTAGTCCTCTAGTGTCTTGAATGAGGACCTGTTCAGAGCATAAATTTTCTGTTGCTGACTAGCTAGAGCAGAAACATAGCACACTAGTAAAAAATCATAATGCTTTAAAGAGAACTAGTGAGTTGTGCAAAAGAACAGTTGAAAAGGTAAAGTTTTGGGTATTGTTAAGTTGACGACCAAAAGCTCTACTTTCTTCATTCTTTTTATTCAACTATTCAATTGTGTATTCATCACACTTAATCCTCCTTAATGTGAATTTATCCCATTGCAGGAAAAATTGTGCGATCTCCATATGGGGTGATGCACGGG-AAAAGCTCCCCTGTATAT</genome_strand>
        <mrna_strand>TTAAACACTCTCCCGCTGTCTTCGGAAAACACTTCCACCTCACTTCACCGCTGCCGCCGTCGCCACCGTCACCGCCACCGCCACCGCCACCGCCACCGCTGTTGTAGATCGACGGCGTCCAATCACAGCCTCGAACGAGGACATTTCATTCTCTCCACAATCTCTCATGGCCGGAATTGTTACCCCTCATGTCTCTTCACAATCCGCCATCGTTCACATCAATGGCAAAAACACATTTCTCTCGCCCCAAAAAACCCTAGATTTTCCAATTCTCTCCGGCTCCGGAGGCTCGTTTCTCCGAATGAGAAGCACAAAGCGGCTCGAGGTGAAGCCGCTTGCTGTATCGCAGAACAGTTCAGCTACTTGTGTTGAGTTATCGGATGATGTTAAACGGAATAAGAGTCCGATTATTGTTATTGATAATTATGATAGCTTCACTTATAATCTCTGTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGGGAGAGCTTGGATGCAGTTTTGAGGTTTATCGAAACGACGAGCTCACTGTGGATGAGCTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCAAGGGGAATACTAATATCACCTGGACCAG..................................................................................................GTACACCTCAAGATTCAGGCATATCATTGCAAACTGTACTGGAACTTGGACCAACAATTCCGTTATTTGGTGTTTGTATGGGTTTGCAATGCATGGCAGAGGCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATTGTGCGATCTCCATATGGGGTGATGCACGGGAAAAAGCTCCCCTGTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321335" ref_strand="+" ref_description="SGN-E321335 [cTOB-23-N19]">
      <seq>aaaaacccctcacttcagttttttcttcttcactttatatgaaaagactcaatttttttacccttataatctaaatctttttgcatatctagtttggtgatccaatacccttttggcttttagtttgttttttcaattttttcttgttcactttgtattaaagactcaatttttttgttcactttgtattaaagactcgtttttatccgtgtaatatgaatctttttgcatttctggtttagtgattcaataccttttggatttttgtttcatcaattctttttcttgttcagtttgtatcaagactctttctttttttaatcattataatatgaatctttttgcatatcttgtttggtgatttaataccattttggtttatgtttcaattttttcttattcactttgtatcgagactcattttttatccttgtaatctgagttcatttgcatatgttgtttaaattatccagtacccttttgtattgtggtttatatttatgcttttcatgaggctattcatcattactccattttatttttttgtttgactttctatcaagactcaatttttatccatctgaatctgtttttgtataatcttgtttaatgttccaatacccttttggcttttgtttcatctttatgctttgatgaggctattacgacgatgtacgaagatttctatcctctgtttgcttgctatttcagtattcactcctggttttctgctttcatttaggctcaaaaacttaacactgatgcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="17248" stop="18728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17548" g_stop="17796" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17797" i_stop="17912" i_length="116">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17913" g_stop="18428" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="764" r_length="515" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18429" i_stop="18517" i_length="89">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.822" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18518" g_stop="18522" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="769" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E321335" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17548" e_stop="17796"/>
          <exon e_start="17913" e_stop="18428"/>
          <exon e_start="18518" e_stop="18522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCCCTCACTTCAGTTTTTTCTTCTTCACTTTATATGAAAAGACTCAATTTTTTTACCCTTATAATCTAAATCTTTTTGCATATCTAGTTTGGTGATCCAATACCCTTTTGGCTTTTAGTTTGTTTTTTCAATTTTTTCTTGTTCACTTTGTATTAAAGACTCAATTTTTTTGTTCACTTTGTATTAAAGACTCGTTTTTATCCGTGTAATATGAATCTTTTTGCATTTCTGGTTTAGTGATTCAATACCCTTTTGGCTTATTTTATCTTTTTTTTTTCCAATTTTTTCTAGTTCACTTTGTATCAAGACTCATTTTTTATCCTTGTAATATGAAGTTTTTTGCATATGGTTGGTGATCCAATACCTTTTGGATTTTTGTTTCATCAATTCTTTTTCTTGTTCAGTTTGTATCAAGACTCTTTCTTTTTTTAATCATTATAATATGAATCTTTTTGCATATCTTGTTTGGTGATTTAATACCATTTTGGTTTATGTTTCAATTTTTTCTTATTCACTTTGTATCGAGACTCATTTTTTATCCTTGTAATCTGAGTTCATTTGCATATGTTGTTTAAATTATCCAGTACCCTTTTGTATTGTGGTTTATATTTATGCTTTTCATGAGGCTATTCATCATTACTCCATTTTATTTTTTTGTTTGACTTTCTATCAAGACTCAATTTTTATCCATCTGAATCTGTTTTTGTATAATCTTGTTTAATGTTCCAATACCCTTTTGGCTTTTGTTTCATCTTTATGCTTTGATGAGGCTATTACGACGATGTACGAGGATTTCTATCCTCTGTTTGCTTGCTATTTCAGTATTCACTCCTGTTTTCTTGCTTTCATTTAGGCTCAAAAACCTTAACACTGATGGTATAATATTTTACTTCTTATTGTTACTTTTCGATCTTTGAGGTCGTAGTTTAATCTGACTATTGTTTCTGTATTCAATTTGTGTGCAGCATCT</genome_strand>
        <mrna_strand>AAAAACCCCTCACTTCAGTTTTTTCTTCTTCACTTTATATGAAAAGACTCAATTTTTTTACCCTTATAATCTAAATCTTTTTGCATATCTAGTTTGGTGATCCAATACCCTTTTGGCTTTTAGTTTGTTTTTTCAATTTTTTCTTGTTCACTTTGTATTAAAGACTCAATTTTTTTGTTCACTTTGTATTAAAGACTCGTTTTTATCCGTGTAATATGAATCTTTTTGCATTTCTGGTTTAGTGATTCA....................................................................................................................ATACCTTTTGGATTTTTGTTTCATCAATTCTTTTTCTTGTTCAGTTTGTATCAAGACTCTTTCTTTTTTTAATCATTATAATATGAATCTTTTTGCATATCTTGTTTGGTGATTTAATACCATTTTGGTTTATGTTTCAATTTTTTCTTATTCACTTTGTATCGAGACTCATTTTTTATCCTTGTAATCTGAGTTCATTTGCATATGTTGTTTAAATTATCCAGTACCCTTTTGTATTGTGGTTTATATTTATGCTTTTCATGAGGCTATTCATCATTACTCCATTTTATTTTTTTGTTTGACTTTCTATCAAGACTCAATTTTTATCCATCTGAATCTGTTTTTGTATAATCTTGTTTAATGTTCCAATACCCTTTTGGCTTTTGTTTCATCTTTATGCTTTGATGAGGCTATTACGACGATGTACGAAGATTTCTATCCTCTGTTTGCTTGCTATTTCAGTATTCACTCCTGGTTTTCTGCTTTCATTTAGGCTCAAAAA-CTTAACACTGATG.........................................................................................CATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300168" ref_strand="+" ref_description="SGN-E300168 [cLEW-17-A9]">
      <seq>ggtgatccaataccttttggatttttgtttcatcaattctttttcttgttcagtttgtatcaagactctttctttttttaatcattataatatgaatctttttgcatatcttgtttggtgatttaataccattttggtttatgtttcaattttttcttattcactttgtatcgagactcattttttatccttgtaatctgagttcatttgcatatgttgtttaaattatccagtacccttttgtattgtggtttatatttatgcttttcatgaggctattcatcattactccattttatttttttgtttgactttctatcaagactcaatttttatccatctgaatctgtttttgtataatcttgtttaatgttccaatacccttttggcttttgtttcatctttatgctttgatgaggctattacgacgatgtacgaggatttctatcctctgtttgcttgctatttcagtattcactcctgttttcttgctttcatttaagctcaaaaaccttaacactgatgcatctaaagactttgttgaagacttatcgattcttaagcatagaatagatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="17604" stop="19419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17904" g_stop="18428" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18429" i_stop="18517" i_length="89">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.822" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18518" g_stop="18552" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="560" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18553" i_stop="19101" i_length="549">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.837" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19102" g_stop="19119" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="578" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E300168" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17904" e_stop="18428"/>
          <exon e_start="18518" e_stop="18552"/>
          <exon e_start="19102" e_stop="19119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATCCAATACCTTTTGGATTTTTGTTTCATCAATTCTTTTTCTTGTTCAGTTTGTATCAAGACTCTTTCTTTTTTTAATCATTATAATATGAATCTTTTTGCATATCTTGTTTGGTGATTTAATACCATTTTGGTTTATGTTTCAATTTTTTCTTATTCACTTTGTATCGAGACTCATTTTTTATCCTTGTAATCTGAGTTCATTTGCATATGTTGTTTAAATTATCCAGTACCCTTTTGTATTGTGGTTTATATTTATGCTTTTCATGAGGCTATTCATCATTACTCCATTTTATTTTTTTGTTTGACTTTCTATCAAGACTCAATTTTTATCCATCTGAATCTGTTTTTGTATAATCTTGTTTAATGTTCCAATACCCTTTTGGCTTTTGTTTCATCTTTATGCTTTGATGAGGCTATTACGACGATGTACGAGGATTTCTATCCTCTGTTTGCTTGCTATTTCAGTATTCACTCCTGTTTTCTTGCTTTCATTTAGGCTCAAAAACCTTAACACTGATGGTATAATATTTTACTTCTTATTGTTACTTTTCGATCTTTGAGGTCGTAGTTTAATCTGACTATTGTTTCTGTATTCAATTTGTGTGCAGCATCTAAAGACTTTGTTGAAGACTTATCGATTCTTGTAAGTTTTTGGCTTGTTTAGTTCAATGTGTTTTATATTGTTTCTACTTGTGATTTGTTGACTATTGTTGTTGTTCCTGCTCATTCAAGCAACTTATAAAGAAAGAAAGGAAGAACATAAGCTTTTGTATAGTTTAAGTTTATTATGCATCTTTGACACCACATCATTGAAAGAAGAACAAAAAAAAGCTTTTGTATAGTTAAGTTCATTTATTTATCTTTGGCACCATATATTGGAAACATCAAGGTGAGATAGGTAATTTTCTTTACCTATGTTGCCCGGACTCTTCAAAACATGTAGAATCTTCCAAAAGTAGTGTATGTTCGGAGAATCTAACACGTGTTACGTTTCCCTCATTTCCCTGATCCTGTGAAAAGAAAACAACTAAGGAGGGGATTTCTAATTCTTCAATTTATTCCTAGGCCCAAACACTGTTTTTTTCTACTTCATTTTGCATAATTGTCTTATTAGTGTTATCATACTAAACAAAGAGAAACAAGTATCTGACTGTCATTTTTATTTTTGGGGGTTTCGGATTCTTGTCTTCAGAAGCATAGAATAGATGCT</genome_strand>
        <mrna_strand>GGTGATCCAATACCTTTTGGATTTTTGTTTCATCAATTCTTTTTCTTGTTCAGTTTGTATCAAGACTCTTTCTTTTTTTAATCATTATAATATGAATCTTTTTGCATATCTTGTTTGGTGATTTAATACCATTTTGGTTTATGTTTCAATTTTTTCTTATTCACTTTGTATCGAGACTCATTTTTTATCCTTGTAATCTGAGTTCATTTGCATATGTTGTTTAAATTATCCAGTACCCTTTTGTATTGTGGTTTATATTTATGCTTTTCATGAGGCTATTCATCATTACTCCATTTTATTTTTTTGTTTGACTTTCTATCAAGACTCAATTTTTATCCATCTGAATCTGTTTTTGTATAATCTTGTTTAATGTTCCAATACCCTTTTGGCTTTTGTTTCATCTTTATGCTTTGATGAGGCTATTACGACGATGTACGAGGATTTCTATCCTCTGTTTGCTTGCTATTTCAGTATTCACTCCTGTTTTCTTGCTTTCATTTAAGCTCAAAAACCTTAACACTGATG.........................................................................................CATCTAAAGACTTTGTTGAAGACTTATCGATTCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCATAGAATAGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689420" ref_strand="+" ref_description="SGN-E689420 [t3_tus_84_L05]">
      <seq>cattggtggacaagaaaaaaatcaacgaaatctatctgagcccatagtgtccccatctagagaaaaggagaagtccaaaccagaaggggttcaacacagtcgaagcatacagtcacatctgcgaaggccattagatgagaaggtaaaagagatgaaagataaggtgataagggccaaagcgtacttgagttttgcaccaccagatagcacctctcattttgtgaaagagataaagctacgaattaaagagctagaacgagcaatgggtgacgttactaaagattctggtttgtcaaggagggccacacaaaagatgaaagccatggatgggaccctgctgaaagcaagcagaatataccctgattgctcagctatggtgaatacactacgtgccatgatgtataatgctgaagaacagcttcgatcacaaagggatcatacttccttcctcgtacagctcgctgcaagaactacaccaaaaggccttcattgcctttccatgcggatgaccacagaatattttgatctgcagcctgaggagcgggagtttcctaaccaacacaaactgcatgatcccaatctctatcactttgctgttttctcaaacaatgttttggcatgttctgtggttgtcaattcaactgtttcaaccgctaaggatccaaagaaaattgtcttccatatactgactgattctctcaaccctgcccagcgatgttcgatgtggttcttgaagaaatcctccctggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19451" stop="22888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19751" g_stop="19818" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19819" i_stop="20524" i_length="706">
            <donor d_prob="0.831" d_score="0.94"/>
            <acceptor a_prob="0.449" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20525" g_stop="20757" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="300" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20758" i_stop="21464" i_length="707">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21465" g_stop="21822" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="658" r_length="358" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21823" i_stop="22500" i_length="678">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22501" g_stop="22588" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="751" r_length="93" r_score="0.841"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E689420" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19751" e_stop="19818"/>
          <exon e_start="20525" e_stop="20757"/>
          <exon e_start="21465" e_stop="21822"/>
          <exon e_start="22501" e_stop="22588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATGGTGGACAAGAAAAAAATCAACGAAATCTATCTGAGCAGAAAGTGTCCCCATCTAGAGAAAAGGTATTATTCTGTATAGTGTGTCATCGTAGCTGAAGATAGAGGAGGTTATAATCTCTTATCTAGTGAGAGTGTTCGATTTTGATCGCTTAGTGCTATACAAGAGAGGCACTCATGATAGTTGTCTCCAGAATTTGTGACTTATGGACTTACTATAACTTCTATTTGGCTGCATTGAATGGATGAAATCCAAATTTAGTAGCATGTACTGTTGGCAAATTTTAGAGTTAGTTAGACATATGTTATTCTCCGTTTCCCTCTATTTAAATTGTCAAGTGGTTGCTTTGATTGTGGTGATCATCTTGTTGATGCGTGGTGACGAAAATAAGAGATCTCATATTTGTCATTTCTCGATCTAGAATGAGATGAATTTTCTAACTTCAGTTCTAGTTGCAATGTCAACATTTGAATGTACAATTTAGGGGCTTTAACTGAAGTTCATGATATATCAAGGATGCCATGTTGAATTTTTACTTTTTCAACATGGTTGCCTGTAGCAATTTGCAAAAAGTTAAAATGTTAGATTTGGTATTCCAGTTCCGGGATCTAAAGTACTTGTTTGATCCTTTCTTTCCTTATAGATATCTTCATCTGTATACATTTCACTTTGTCACGTGCAACTAGAAAGTCAATTATGTTATATTGTTCATAGCAAGTACATGCTTATTTTGAGTTTGGAGTCTGCTGATTTCGGCTAGGGTTGTCGCAGGAGAAGTCCAAACCAGAAGGGGTTCAACACAGTCGAAGCATACAGTCACATCTGCGAAGGCCATTAGATGAGAAGGTAAAAGAGATGAAAGATAAGGTGATAAGGGCCAAAGCGTACTTGAGTTTTGCACCACCAGATAGCACCTCTCATTTTGTGAAAGAGATAAAGCTACGAATTAAAGAGCTAGAACGAGCAATGGGTGACGTTACTAAAGATTCTGGTTTGTCAAGGAGGTGAGGTCATTTTTCTTTACCACCTCTCCCCCTCACACACACAACAATACACCTAACAGGCTATAACATGCTTCTTCATTTTTTTAAATATAAAATTTAATCAGTGCAATTTACAGAACCTGGCTCATCTTATGTGTCAGTTGCTACTCAGAAGCATAAAATCTGTTTTGGCTGAGTAGTGGATTTGTCATGTTATGATCTGTTCTCTATGTTGCTTGGACTCTCATGTCGATAGGTGTGTGTTGGATCCTTCAAAAGTAGTGCATTTTGGTGGATAAGTCAGAGGTGCAACAACATTTTTGGAAAGTCCGAGCAACATAGTTTGTACTTACTGAGACTGCTCTACTCTTAGACAGATGATAATCTATTTAGAGTAGAACTGACATATTAAGTTTGTTACTGTCTTTAAAGAGACAAGAATACTCACTTGATGTTGACCTGAGGATATTCCAAACGAGAGCACTTTACTCCCGCTTATGTGCGGCTCCAGGGAAAGCCAGACCATAAGGGTCTTTTGTATGCCATCTTACCCTGCATTTATGCAAGAGGTTGTTTCCACAGCTTGAACCCGTGACCTCCCGGTCACATGTCAACAACTTTACAAGTTACGCCAAGGCTCATGATAATTGTTTAAAATAGGAAACTGAATGCTGTTTTTAAATAGTTAATATGTTGTATGTATAATCTAAGAGCAGCTTGTTTTCTAGGGCCACACAAAAGATGAAAGCCATGGATGGGACCCTGCTGAAAGCAAGCAGAATATACCCTGATTGCTCAGCTATGGTGAATACACTACGTGCCATGATGTATAATGCTGAAGAACAGCTTCGATCACAAAGGGATCATACTTCCTTCCTCGTACAGCTCGCTGCAAGAACTACACCAAAAGGCCTTCATTGCCTTTCCATGCGGTTGACCACAGAATATTTTGATCTGCAGCCTGAGGAGCGGGAGTTTCCTAACCAACACAAACTGCAGGATCCCAATCTCTATCACTTTGCTGTTTTCTCAGACAATGTTTTGGCATGTTCTGTGGTTGTCAATTCAACTGTTTCAACCGCTAAGGTATGCGATCTGTGTGTTTTCTCATTTGGGATCACATTTCTTTCTTGAATACGATTCCTCCATGTGCTTTACGTCATTAATGCTACGTTCATACACCAAGGGTTCCAAGAAGCAAGTAAATCTAGGTGGTTCTGAAGAAGATACTAATCAAATCCCTTAACTGAGAGATTGGTTCTGATTTCTGCCATCTTGTAACTTGATAAGCACTGGAATGTTGAACACTAAGCTTACTGAGTATTTGATTTTATGATATATCCAACATTAATTTTAGGACAACTGGACAAAATGGATGGCCTGCAGAGGAAAAACACTTGTTTTTCATGTTTAGTTAACAATATTCATCTTCATTTTCTTAACGGAGCTGTAGGAAAGAATCTTTGGCCTGATTTTGGAAGTGACTAATTCTAGTTCATGTACAAAAATAACTTACTATTAGGAAATAAGTTGATATTACTCGGTCGTCCTCAAATCTGCAAATACATTTTTAAGACTATTTGCTAGTAATACTGTAGTTTCATCAGCTTATATGCAATAGGAATAAGGTAAGCAGAGGAAGTTTGACTAGTTTTCTTGGTACATGTATAGCAAATAGTAACTGCTAATTTGAAATTTTGAATTTGAAAACTAAATCATCACAAATATGTCTTTATTGAAGGTAAATGTTTATGTACTTGGCAGGATCCAGAGAAAATTGTCTTCCATATAGTGACTGATTCTCTCAA-CCTG-CCAGCGATG-TCGATGTGGTTCTTGATG-AATCCT-CCTGGAA</genome_strand>
        <mrna_strand>CAT-TGGTGGACAAGAAAAAAATCAACGAAATCTATCTGAGCCCATAGTGTCCCCATCTAGAGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGTCCAAACCAGAAGGGGTTCAACACAGTCGAAGCATACAGTCACATCTGCGAAGGCCATTAGATGAGAAGGTAAAAGAGATGAAAGATAAGGTGATAAGGGCCAAAGCGTACTTGAGTTTTGCACCACCAGATAGCACCTCTCATTTTGTGAAAGAGATAAAGCTACGAATTAAAGAGCTAGAACGAGCAATGGGTGACGTTACTAAAGATTCTGGTTTGTCAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACACAAAAGATGAAAGCCATGGATGGGACCCTGCTGAAAGCAAGCAGAATATACCCTGATTGCTCAGCTATGGTGAATACACTACGTGCCATGATGTATAATGCTGAAGAACAGCTTCGATCACAAAGGGATCATACTTCCTTCCTCGTACAGCTCGCTGCAAGAACTACACCAAAAGGCCTTCATTGCCTTTCCATGCGGATGACCACAGAATATTTTGATCTGCAGCCTGAGGAGCGGGAGTTTCCTAACCAACACAAACTGCATGATCCCAATCTCTATCACTTTGCTGTTTTCTCAAACAATGTTTTGGCATGTTCTGTGGTTGTCAATTCAACTGTTTCAACCGCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCAAAGAAAATTGTCTTCCATATACTGACTGATTCTCTCAACCCTGCCCAGCGATGTTCGATGTGGTTCTTGAAGAAATCCTCCCTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334192" ref_strand="+" ref_description="SGN-E334192 [cTOD-21-H17]">
      <seq>gtggacaagaaaaaaatcaacgaaatctatctgagcagaaagtgtccccatctagagaaaaggagaagtccaaaccagaaggggttcaacacagtcgaagcatacagtcacatctgcgaaggccattagatgagaaggtaaaagagatgaaagataaggtgataagggccaaagcgtacttgagttttgcaccaccagatagcacctctcattttgtgaaagagataaagctacgaattaaagagctagaacgagcaatgggtgacgttactaaagattctggtttgtcaaggagggccacacaaaagatgaaagccatggatgggaccctgctgaaagcaagcagaatataccctgattgctcagctatggtgaatacactacgtgccatgatgtataatgctgaagaacagcttcgatcacaaagggatcatacttccttcctcgtacagctcgctgcaagaactacaccaaaaggccttcattgcctttccatgcggttgaccacagaatattttgatctgcagcctgaggagcgggagtttcctaaccaacacaaactgcaggatcccaatctctatcactttgctgttttctcagacaatgttttggcatgttctgtggttgtcaattcaactgtttcaacccgctaggatnccagagaaattgtcttccatatagtgactgattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19457" stop="22839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19757" g_stop="19818" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19819" i_stop="20524" i_length="706">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.449" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20525" g_stop="20757" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="295" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20758" i_stop="21464" i_length="707">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21465" g_stop="21822" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="654" r_length="359" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21823" i_stop="22500" i_length="678">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22501" g_stop="22539" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="692" r_length="38" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E334192" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19757" e_stop="19818"/>
          <exon e_start="20525" e_stop="20757"/>
          <exon e_start="21465" e_stop="21822"/>
          <exon e_start="22501" e_stop="22539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGACAAGAAAAAAATCAACGAAATCTATCTGAGCAGAAAGTGTCCCCATCTAGAGAAAAGGTATTATTCTGTATAGTGTGTCATCGTAGCTGAAGATAGAGGAGGTTATAATCTCTTATCTAGTGAGAGTGTTCGATTTTGATCGCTTAGTGCTATACAAGAGAGGCACTCATGATAGTTGTCTCCAGAATTTGTGACTTATGGACTTACTATAACTTCTATTTGGCTGCATTGAATGGATGAAATCCAAATTTAGTAGCATGTACTGTTGGCAAATTTTAGAGTTAGTTAGACATATGTTATTCTCCGTTTCCCTCTATTTAAATTGTCAAGTGGTTGCTTTGATTGTGGTGATCATCTTGTTGATGCGTGGTGACGAAAATAAGAGATCTCATATTTGTCATTTCTCGATCTAGAATGAGATGAATTTTCTAACTTCAGTTCTAGTTGCAATGTCAACATTTGAATGTACAATTTAGGGGCTTTAACTGAAGTTCATGATATATCAAGGATGCCATGTTGAATTTTTACTTTTTCAACATGGTTGCCTGTAGCAATTTGCAAAAAGTTAAAATGTTAGATTTGGTATTCCAGTTCCGGGATCTAAAGTACTTGTTTGATCCTTTCTTTCCTTATAGATATCTTCATCTGTATACATTTCACTTTGTCACGTGCAACTAGAAAGTCAATTATGTTATATTGTTCATAGCAAGTACATGCTTATTTTGAGTTTGGAGTCTGCTGATTTCGGCTAGGGTTGTCGCAGGAGAAGTCCAAACCAGAAGGGGTTCAACACAGTCGAAGCATACAGTCACATCTGCGAAGGCCATTAGATGAGAAGGTAAAAGAGATGAAAGATAAGGTGATAAGGGCCAAAGCGTACTTGAGTTTTGCACCACCAGATAGCACCTCTCATTTTGTGAAAGAGATAAAGCTACGAATTAAAGAGCTAGAACGAGCAATGGGTGACGTTACTAAAGATTCTGGTTTGTCAAGGAGGTGAGGTCATTTTTCTTTACCACCTCTCCCCCTCACACACACAACAATACACCTAACAGGCTATAACATGCTTCTTCATTTTTTTAAATATAAAATTTAATCAGTGCAATTTACAGAACCTGGCTCATCTTATGTGTCAGTTGCTACTCAGAAGCATAAAATCTGTTTTGGCTGAGTAGTGGATTTGTCATGTTATGATCTGTTCTCTATGTTGCTTGGACTCTCATGTCGATAGGTGTGTGTTGGATCCTTCAAAAGTAGTGCATTTTGGTGGATAAGTCAGAGGTGCAACAACATTTTTGGAAAGTCCGAGCAACATAGTTTGTACTTACTGAGACTGCTCTACTCTTAGACAGATGATAATCTATTTAGAGTAGAACTGACATATTAAGTTTGTTACTGTCTTTAAAGAGACAAGAATACTCACTTGATGTTGACCTGAGGATATTCCAAACGAGAGCACTTTACTCCCGCTTATGTGCGGCTCCAGGGAAAGCCAGACCATAAGGGTCTTTTGTATGCCATCTTACCCTGCATTTATGCAAGAGGTTGTTTCCACAGCTTGAACCCGTGACCTCCCGGTCACATGTCAACAACTTTACAAGTTACGCCAAGGCTCATGATAATTGTTTAAAATAGGAAACTGAATGCTGTTTTTAAATAGTTAATATGTTGTATGTATAATCTAAGAGCAGCTTGTTTTCTAGGGCCACACAAAAGATGAAAGCCATGGATGGGACCCTGCTGAAAGCAAGCAGAATATACCCTGATTGCTCAGCTATGGTGAATACACTACGTGCCATGATGTATAATGCTGAAGAACAGCTTCGATCACAAAGGGATCATACTTCCTTCCTCGTACAGCTCGCTGCAAGAACTACACCAAAAGGCCTTCATTGCCTTTCCATGCGGTTGACCACAGAATATTTTGATCTGCAGCCTGAGGAGCGGGAGTTTCCTAACCAACACAAACTGCAGGATCCCAATCTCTATCACTTTGCTGTTTTCTCAGACAATGTTTTGGCATGTTCTGTGGTTGTCAATTCAACTGTTTCAA-CCGCTAAGGTATGCGATCTGTGTGTTTTCTCATTTGGGATCACATTTCTTTCTTGAATACGATTCCTCCATGTGCTTTACGTCATTAATGCTACGTTCATACACCAAGGGTTCCAAGAAGCAAGTAAATCTAGGTGGTTCTGAAGAAGATACTAATCAAATCCCTTAACTGAGAGATTGGTTCTGATTTCTGCCATCTTGTAACTTGATAAGCACTGGAATGTTGAACACTAAGCTTACTGAGTATTTGATTTTATGATATATCCAACATTAATTTTAGGACAACTGGACAAAATGGATGGCCTGCAGAGGAAAAACACTTGTTTTTCATGTTTAGTTAACAATATTCATCTTCATTTTCTTAACGGAGCTGTAGGAAAGAATCTTTGGCCTGATTTTGGAAGTGACTAATTCTAGTTCATGTACAAAAATAACTTACTATTAGGAAATAAGTTGATATTACTCGGTCGTCCTCAAATCTGCAAATACATTTTTAAGACTATTTGCTAGTAATACTGTAGTTTCATCAGCTTATATGCAATAGGAATAAGGTAAGCAGAGGAAGTTTGACTAGTTTTCTTGGTACATGTATAGCAAATAGTAACTGCTAATTTGAAATTTTGAATTTGAAAACTAAATCATCACAAATATGTCTTTATTGAAGGTAAATGTTTATGTACTTGGCAGGATCCAGAGAAAATTGTCTTCCATATAGTGACTGATTCT</genome_strand>
        <mrna_strand>GTGGACAAGAAAAAAATCAACGAAATCTATCTGAGCAGAAAGTGTCCCCATCTAGAGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGTCCAAACCAGAAGGGGTTCAACACAGTCGAAGCATACAGTCACATCTGCGAAGGCCATTAGATGAGAAGGTAAAAGAGATGAAAGATAAGGTGATAAGGGCCAAAGCGTACTTGAGTTTTGCACCACCAGATAGCACCTCTCATTTTGTGAAAGAGATAAAGCTACGAATTAAAGAGCTAGAACGAGCAATGGGTGACGTTACTAAAGATTCTGGTTTGTCAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACACAAAAGATGAAAGCCATGGATGGGACCCTGCTGAAAGCAAGCAGAATATACCCTGATTGCTCAGCTATGGTGAATACACTACGTGCCATGATGTATAATGCTGAAGAACAGCTTCGATCACAAAGGGATCATACTTCCTTCCTCGTACAGCTCGCTGCAAGAACTACACCAAAAGGCCTTCATTGCCTTTCCATGCGGTTGACCACAGAATATTTTGATCTGCAGCCTGAGGAGCGGGAGTTTCCTAACCAACACAAACTGCAGGATCCCAATCTCTATCACTTTGCTGTTTTCTCAGACAATGTTTTGGCATGTTCTGTGGTTGTCAATTCAACTGTTTCAACCCGCTAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATNCCAGAG-AAATTGTCTTCCATATAGTGACTGATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581725" ref_strand="+" ref_description="SGN-E581725 [7352]">
      <seq>gaagtcaacgaaatctatctgagcaaaaagtgtcccggtatagagaaacaggcagaagtccagaccagaaggggttcaacacagtcggagcattcagtcacatccgcggaggccattagatgagaaggtaaaagagatgaaagataaggtgataagggccaaagcatacttgagttttgcaccaccagatagcaactctcattttgtgaaagagataaagctacggaattaaagagctagaacgagctatgggtgatgttactaaagcattctggtttgtcaaggagggccacgcaaaagatgaaagccatggatgggaccctgctgaaagcaagcagaatataccctgattgctcagctatggtgacatacactgacgtgccatgacgtataatgctgcaagaacagcttcgatcacaaaggggatcaaacttccttcctcgtacagctcgctgcaagaactacaccaaaaggccttcatggcctttcccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19470" stop="21965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19769" g_stop="19818" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.840"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19819" i_stop="20524" i_length="706">
            <donor d_prob="0.831" d_score="0.86"/>
            <acceptor a_prob="0.449" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20525" g_stop="20757" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="287" r_length="236" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20758" i_stop="21464" i_length="707">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21465" g_stop="21661" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="488" r_length="201" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E581725" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19769" e_stop="19818"/>
          <exon e_start="20525" e_stop="20757"/>
          <exon e_start="21465" e_stop="21661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAACGAAATCTATCTGAGCAGAAAGTGTCCCCATCTAGAGAAA-AGGTATTATTCTGTATAGTGTGTCATCGTAGCTGAAGATAGAGGAGGTTATAATCTCTTATCTAGTGAGAGTGTTCGATTTTGATCGCTTAGTGCTATACAAGAGAGGCACTCATGATAGTTGTCTCCAGAATTTGTGACTTATGGACTTACTATAACTTCTATTTGGCTGCATTGAATGGATGAAATCCAAATTTAGTAGCATGTACTGTTGGCAAATTTTAGAGTTAGTTAGACATATGTTATTCTCCGTTTCCCTCTATTTAAATTGTCAAGTGGTTGCTTTGATTGTGGTGATCATCTTGTTGATGCGTGGTGACGAAAATAAGAGATCTCATATTTGTCATTTCTCGATCTAGAATGAGATGAATTTTCTAACTTCAGTTCTAGTTGCAATGTCAACATTTGAATGTACAATTTAGGGGCTTTAACTGAAGTTCATGATATATCAAGGATGCCATGTTGAATTTTTACTTTTTCAACATGGTTGCCTGTAGCAATTTGCAAAAAGTTAAAATGTTAGATTTGGTATTCCAGTTCCGGGATCTAAAGTACTTGTTTGATCCTTTCTTTCCTTATAGATATCTTCATCTGTATACATTTCACTTTGTCACGTGCAACTAGAAAGTCAATTATGTTATATTGTTCATAGCAAGTACATGCTTATTTTGAGTTTGGAGTCTGCTGATTTCGGCTAGGGTTGTCGCAGG-AGAAGTCCAAACCAGAAGGGGTTCAACACAGTCGAAGCATACAGTCACATCTGCGAAGGCCATTAGATGAGAAGGTAAAAGAGATGAAAGATAAGGTGATAAGGGCCAAAGCGTACTTGAGTTTTGCACCACCAGATAGCACCTCTCATTTTGTGAAAGAGATAAAGCTAC-GAATTAAAGAGCTAGAACGAGCAATGGGTGACGTTACTAAAG-ATTCTGGTTTGTCAAGGAGGTGAGGTCATTTTTCTTTACCACCTCTCCCCCTCACACACACAACAATACACCTAACAGGCTATAACATGCTTCTTCATTTTTTTAAATATAAAATTTAATCAGTGCAATTTACAGAACCTGGCTCATCTTATGTGTCAGTTGCTACTCAGAAGCATAAAATCTGTTTTGGCTGAGTAGTGGATTTGTCATGTTATGATCTGTTCTCTATGTTGCTTGGACTCTCATGTCGATAGGTGTGTGTTGGATCCTTCAAAAGTAGTGCATTTTGGTGGATAAGTCAGAGGTGCAACAACATTTTTGGAAAGTCCGAGCAACATAGTTTGTACTTACTGAGACTGCTCTACTCTTAGACAGATGATAATCTATTTAGAGTAGAACTGACATATTAAGTTTGTTACTGTCTTTAAAGAGACAAGAATACTCACTTGATGTTGACCTGAGGATATTCCAAACGAGAGCACTTTACTCCCGCTTATGTGCGGCTCCAGGGAAAGCCAGACCATAAGGGTCTTTTGTATGCCATCTTACCCTGCATTTATGCAAGAGGTTGTTTCCACAGCTTGAACCCGTGACCTCCCGGTCACATGTCAACAACTTTACAAGTTACGCCAAGGCTCATGATAATTGTTTAAAATAGGAAACTGAATGCTGTTTTTAAATAGTTAATATGTTGTATGTATAATCTAAGAGCAGCTTGTTTTCTAGGGCCACACAAAAGATGAAAGCCATGGATGGGACCCTGCTGAAAGCAAGCAGAATATACCCTGATTGCTCAGCTATGGTGA-ATACACT-ACGTGCCATGATGTATAATGCTG-AAGAACAGCTTCGATCACAAA-GGGATCATACTTCCTTCCTCGTACAGCTCGCTGCAAGAACTACACCAAAAGGCCTTCATTGCCTTT</genome_strand>
        <mrna_strand>GAAGTCAACGAAATCTATCTGAGCAAAAAGTGTCCCGGTATAGAGAAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGTCCAGACCAGAAGGGGTTCAACACAGTCGGAGCATTCAGTCACATCCGCGGAGGCCATTAGATGAGAAGGTAAAAGAGATGAAAGATAAGGTGATAAGGGCCAAAGCATACTTGAGTTTTGCACCACCAGATAGCAACTCTCATTTTGTGAAAGAGATAAAGCTACGGAATTAAAGAGCTAGAACGAGCTATGGGTGATGTTACTAAAGCATTCTGGTTTGTCAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACGCAAAAGATGAAAGCCATGGATGGGACCCTGCTGAAAGCAAGCAGAATATACCCTGATTGCTCAGCTATGGTGACATACACTGACGTGCCATGACGTATAATGCTGCAAGAACAGCTTCGATCACAAAGGGGATCAAACTTCCTTCCTCGTACAGCTCGCTGCAAGAACTACACCAAAAGGCCTTCATGGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447237" ref_strand="+" ref_description="SGN-E447237 [cSTA-25-K24]">
      <seq>gttcaaggtgaattaaatacttcgaacccaagtggtcctcttacacatcgaacctataataaggatcgtgatcgtgaaaattttgctaaaatggttgttgtttgtggtttaccttttagttttggagaacatccgggttttattgcatatattcgtgatacatataatcctagttttaaaggtttatcaagaagcatggtaaaaagagatatttttgaatttcaagaaaaacattgtcaatatttgcgtgcctattttgaaataatggattgtagagttgctattaccactgatatgggtcgtagtcctaatggttttgattatttaactgttactgcgcattggactgattataattggaatttacaaaaaagaattattggttataaaatttgtcaaaagaaaaaaactggaatgtatattgctactactgtgttggaaattttagattttttcggtctttgtgataaagtcattagtattactttagataatgcttctgctaatttaaatgctattaatatgctagaaactagactttgtcctattagtaaatatgcttttcatgttagatgtgctgcgcatatattaaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29611" stop="28415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29311" g_stop="28715" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E447237" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29311" e_stop="28715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGAAGTGAGTTAAATACTTCGAACCCAAGTGGTCCTCTTACACATCGAACCTATAACAAGGATCGTGATCGTGAAAACTTTGCTAAAATGGTTGTTGTTTGTGGTTTACCTTTTAGTTTTGGAGAACATCCGGGTTTTATTGCTTATATTCGTGAAACATATAATCCTAGTTTTCAAGGTTTATCAAGAAGCATGGTAAAAAGAGATATTTTCGAATTTCAAGAAAAACATTGTCAATATTTACGTGCCTATTTTGAACTAATGGATTGTAGAGTTGCTATTACTACTGATATGGGTCGTAGTCCTAATGGTTTTGATTATTTAACTGTTACTGCGCATTGGATCGATTATAATTAGAATTTACAAAAAAGAATTATTGGTTATAAAATTTGTCAAAAGAAAAAAACCGGAATTTATATTGCTACTACTGTGTTGGAAATTTTAGATTTTTTTGGTCTTTGTGATAAAGTCGTTAGTATTACTTTAGATAATGTCTCTGCTAATTTAAATGCTATTAATTTGCTAGAACCTAGACTTTGTCCTATTAGTAAATATGCTTTTCATGTTAGATGTGCCGCGCATATATTAAATTTG</genome_strand>
        <mrna_strand>GTTCAAGGTGAATTAAATACTTCGAACCCAAGTGGTCCTCTTACACATCGAACCTATAATAAGGATCGTGATCGTGAAAATTTTGCTAAAATGGTTGTTGTTTGTGGTTTACCTTTTAGTTTTGGAGAACATCCGGGTTTTATTGCATATATTCGTGATACATATAATCCTAGTTTTAAAGGTTTATCAAGAAGCATGGTAAAAAGAGATATTTTTGAATTTCAAGAAAAACATTGTCAATATTTGCGTGCCTATTTTGAAATAATGGATTGTAGAGTTGCTATTACCACTGATATGGGTCGTAGTCCTAATGGTTTTGATTATTTAACTGTTACTGCGCATTGGACTGATTATAATTGGAATTTACAAAAAAGAATTATTGGTTATAAAATTTGTCAAAAGAAAAAAACTGGAATGTATATTGCTACTACTGTGTTGGAAATTTTAGATTTTTTCGGTCTTTGTGATAAAGTCATTAGTATTACTTTAGATAATGCTTCTGCTAATTTAAATGCTATTAATATGCTAGAAACTAGACTTTGTCCTATTAGTAAATATGCTTTTCATGTTAGATGTGCTGCGCATATATTAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447233" ref_strand="+" ref_description="SGN-E447233 [cSTA-25-K12]">
      <seq>ttttattgcatatattcgtgatacatataatcctagttttaaaggtttatcaagaagcatggtcaaaagagatatttttgaatttcaagaaaaacattgtcaatatttgcgtgcctattttgaaataatggattgtagagttgctattaccactgatatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29474" stop="28712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29174" g_stop="29012" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E447233" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>163</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29174" e_stop="29012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTGCTTATATTCGTGAAACATATAATCCTAGTTTTCAAGGTTTATCAAGAAGCATGGTAAAAAGAGATATTTTCGAATTTCAAGAAAAACATTGTCAATATTTACGTGCCTATTTTGAACTAATGGATTGTAGAGTTGCTATTACTACTGATATGGGT</genome_strand>
        <mrna_strand>TTTTATTGCATATATTCGTGATACATATAATCCTAGTTTTAAAGGTTTATCAAGAAGCATGGTCAAAAGAGATATTTTTGAATTTCAAGAAAAACATTGTCAATATTTGCGTGCCTATTTTGAAATAATGGATTGTAGAGTTGCTATTACCACTGATATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438066" ref_strand="+" ref_description="SGN-E438066 [cSTA-6-E3]">
      <seq>acattttaaatatacatctggtgggagtggaggttcaacggggggattaaaaaaacatttgattaataagcatagtaaagagtggtttgcatatatatcttctcttaatgtttgtgaaaattctaacattgaaacatcggttagagggtcaaatatggttcaaggtgaattaaatacttcgaacccaagtggtcctcttacacatcgaacctataataaggatcgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29768" stop="28940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29468" g_stop="29240" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E438066" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29468" e_stop="29240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTTAAATATACATCTGGTGGGACGGGAGGTTCAACGGGGGGATTAAAAAAACATTTGATTAACAAGCATAGTAAAGAGTGGTTTGCATATATGTCTTCTCTTGAAGTTGGTGGAAATTGTAATGTTGAAGAATCGGTTAGAGGATCAAATATGGTTCGAAGTGAGTTAAATACTTCGAACCCAAGTGGTCCTCTTACACATCGAACCTATAACAAGGATCGTGAT</genome_strand>
        <mrna_strand>ACATTTTAAATATACATCTGGTGGGAGTGGAGGTTCAACGGGGGGATTAAAAAAACATTTGATTAATAAGCATAGTAAAGAGTGGTTTGCATATATATCTTCTCTTAATGTTTGTGAAAATTCTAACATTGAAACATCGGTTAGAGGGTCAAATATGGTTCAAGGTGAATTAAATACTTCGAACCCAAGTGGTCCTCTTACACATCGAACCTATAATAAGGATCGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279240" ref_strand="+" ref_description="SGN-E279240 [cLEL-4-M21](-)">
      <seq>attaataccataatatctttcatagagttcatggggagtcggactatctgaattaatatttataggaccgggacgggaaaaactagtttcattcacatgcgtaaattcatctgtatttattctaacaagaggaattttagatttagacgaactagcacctttgttagtttttttaactaatttttttactgattctactagaccttttttacttccactttttttagaagactccatgatataaaattataaattataaaatacgaaacttaacaagaacaacttacaagttaaataataaatacaaaaaataaatataagattagagagtggaacgaagttaccaaacgtttgtataagaacaaacgattataatgaaaattaaaatattgatgtcgaaacttgaaatttgaagaagattcctcctgggaaatacaccaaatgaccaaatgatataagttatacacttatacttataaatatgaatgtaatttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29435" stop="30510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29735" g_stop="30199" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E279240" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29735" e_stop="30199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATACCATAATATCTTTCATAGAGTTCATGGGGAGTCGGACTATCTGAATTAATATTTATAGGACCGGGGCGGGAAAAACTAGTTTCATTCACATGCGTAAATTCATCTGTATTTATTCTAACAAGAGGAATTTTAGATTTAGACGAACTAGCACCTTTGTTAGTTTTTTTAACTAATTTTTTTACTGATTCTACTAGACCTTTTTTACTTCCACTTTTTTTAGAAGACTCCATGATATAAAATTATAAATTATAAAATACGAAACTTAACAAGAACAACTTACAAGTTAAATAATAAATACAAAAAATAAATATAAGATTAGAGAGTGGAACGAAGTTACCAAACGTTTGTATAAGAACAAACTATTATAATGAAAATTAAAATATTGATGTCGAAACTTGAAATTTGAAGAAGATTCCTCCTCCGAAATACACCAAATGACCAAATGATATAAGTTATAA</genome_strand>
        <mrna_strand>ATTAATACCATAATATCTTTCATAGAGTTCATGGGGAGTCGGACTATCTGAATTAATATTTATAGGACCGGGACGGGAAAAACTAGTTTCATTCACATGCGTAAATTCATCTGTATTTATTCTAACAAGAGGAATTTTAGATTTAGACGAACTAGCACCTTTGTTAGTTTTTTTAACTAATTTTTTTACTGATTCTACTAGACCTTTTTTACTTCCACTTTTTTTAGAAGACTCCATGATATAAAATTATAAATTATAAAATACGAAACTTAACAAGAACAACTTACAAGTTAAATAATAAATACAAAAAATAAATATAAGATTAGAGAGTGGAACGAAGTTACCAAACGTTTGTATAAGAACAAACGATTATAATGAAAATTAAAATATTGATGTCGAAACTTGAAATTTGAAGAAGATTCCTCCTGGGAAATACACCAAATGACCAAATGATATAAGTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="39498" stop="40395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39798" g_stop="40122" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39798" e_stop="40122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATATATATTGCATAATTATAAGTGTATAGCAAGAAGAAATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATATACTTCTGTTGTATAAAGCTAGATAAAATTGTATTTCAGTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATCTGTATATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAA-TTATACACTTCTGTGTATAAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACA--TGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTAT-ATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="39498" stop="40395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39798" g_stop="40090" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39798" e_stop="40090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATATATATTGCATAATTATAAGTGTATAGCAAGAAGAAATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATATACTTCTGTTGTATAAAGCTAGATAAAATTGTATTTCAGTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATCTGTATATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACA--TGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="39499" stop="40547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39799" g_stop="40248" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39799" e_stop="40248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATATATATTGCATAATTATAAGTGTATAGCAAGAAGAAATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATATACTTCTGTTGTATAAAGCTAGATAAAATTGTATTTCAGTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATCTGTATATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAA-TTATACACTTCTGTGTATAAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCAAGATTTTTGGGAGAGAGACG-CTGACAAATTTTAATTAATGTTTGTTATGGAGCACAATTAAATTAAACCCTAACTATTTCATTTAATTTAGATTATTAA</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACA--TGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTAT-ATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203090" ref_strand="+" ref_description="SGN-E203090 [cLEB-3-H15]">
      <seq>gcacgagccggcaaccaactttgttctgagaaaatacttcattgctagctgtagctcgacggacggcggtaagcagaacggccggaggtgattccatttgctgtagaaaatcacaaaatccaagcaagattagaaagagcatcagcctcaaacaaggaagtactatatctactactaatcttggtccttcattcacttgagatgtctttgtgtagacctccacttcctcgacttctgctgaataacgtctcgtgtatgagaaatgctcaacaaattttgcgccacataaatgtttccctccatgatggtggtgcactggtactaacaggcaccaatggctctggttaatccacattcttgcgcatgttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41150" stop="44209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41443" g_stop="41559" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41560" i_stop="43654" i_length="2095">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43655" g_stop="43909" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="372" r_length="255" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E203090" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41443" e_stop="41559"/>
          <exon e_start="43655" e_stop="43909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCTCCGGCAACCAACTTTGTTCTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGAGGTGATTCCATTTGCTGTAGAAAATCACAAAGTTCGTCTTTTGTCATCTCCATTTCTGTATTTGCTTTTCTATTTATTTTGGGAATTTCAGCTTGTGATCATAACTTGTTGGATGAAATGCTTATGATGTGTGAGTATTAATGGACTTTCATTCTTACCTTGTTTTGTTATACCGTATCTGTTAGATTGAATTGAAAAACTTGAAAAATTGGAAGAACGATGATTGTTTGGATTTAGATGTGTAATTAAGGATTGTATGCTGAATGATTGTCATTGAATTTATTGGTATTGATTGCTTTTTGTTAAAATCCATGTACACTTTACACTCTCTAGAGGCCAACTTTGTTGTTGTTAATCCCAATGTTTCAGTTTATGTGAGGTGTTTGTGTGGGCACCAAGTTTTTATTTAAGAAAATTGGGTACTTTTGTGAAAGACTAAAAGGAAAAAACAGTGACATAAATTGGGATATAGGATCACAATTTGTATATGTTTAGTGCATTCCACTCAATGCTGTAGATTTTACTGAGGAGTTTTGAATCATTTGGAATGTTAAGGGAAAAGTGAGACCTCTTATTTCACTTTCGTTGGTCTAATTTCCATGCGAATGCTTCGATCATCGAGATAAATTACTTTTCCTGTTATGGTAGGAAGTTGGTGCATTCAGTTGCCATATTTTTGTCTAATGTAGAAGGTAAGTCTTACCTGTATTTTGTTATTCATGAATTAATGTCGCTATACACACTTTTTTCCAAGAGAGGGAAGTGATGTTAAATTAATTCCAGGTATTTTTTTGCAAAAAGAACTTTCAAATGCCATAAGTGCAGACTGCAATTTTATCTTCCCAAATGTCATTCAGTTGGCTAGTGTGCTAACTTGATTGTTCTGGTAATATGTTTTGATTATTAAGAGAAGTATTAAAGGATCATTTGGACCAAGTACGGAATGGAAAACAAGCTCTCTAAACTACTAGGACTATCTAATTCATTCATGTCTTTTTTGAAGTACAGTCTGTGAATCTAAGATTTTCTTTCACTTTATATAACAAAAATTATATGTTAGCCTCAATTGAAGAGGAAATGACTAAGTCTAATTCTGCTAAGAGGGGTCTCTCTATTTTCATGAAGTTCTGAGATTTTCTGATGTGAGCCTTTGACTTTAGATTCCAAGAATTTGTATCCTAGTCTCAGTAGTTAAAAAAAGAAAGAATTAGTATCTTTTAGTCTCAGTAGAAGAGGAGTATGATTGCTCAGTTTCTCCTTTTCTTGGTTTTTTGTTTCTTCTTAAATCTTTCAAATCTAATGCTTCAAAGAATGATTCTTGTGGAACTAAATTTTCTTGTAAAAGTTGTTCATTCAACTTAATGACTTTTCTACCGATGCCATGTTAGAGTGTAACTGCTGTCAAGTTTCAAGTCGGTTAACTGTGTCTTACTTTGCGTGGTATCTGCACATTGCGGGACACGTTTATCGATTGTAATCTGATGAGAAAAATATGATTAGAGGCCTCCTTTCCTTTACCTTGTTTTCTGTGATACACACGAGCTACATTTAATAAAATATTGCAATTCTTGATGGTCCTTCTTGTTTAAGGGGAGAACTAGAAATGAGAATGATGTGGATTTCCCTTGCCTAAGAAATAAACTTTTTATATGATTTTGGTTGTTCAAGGGATAGGGGAGCTATGAGGAGGATGTGGAGCAAAGCTTTTTTCGGTTTCTCTAAATGTGCTTCTATGAAAAGAAATTCCATATGAGGGAAATTCAGTGACCTAGTAGCATTATAGAGTGTTACACATAGAAAACGAGTGAGAAATATCATGGAAGTCTTTCCTCTTTCCTCCTCTTCATTTTTCCTTTTCTGTTTTGGTTCTTCATAGTTTGTATAAAACATATGAGTAGATTTGATTGTGCTGCTTTCATGCCTGATTCGGAGTTCCAAATGATGTTATTTATGTGTTTAACCAATTGCTCATAATGCTTTTGTATCAGCAAGTAAACTTTGATTTGGCACAATTTGTTTCTATTTTGAACTGACTGGATACATTCAGTCACTGAAACTTGTGAATTTTTTCTACTTTTGCTTTTAATTTATCAGATTGCATAATATCTCTTGTAATTTCTTCTCAGATCCAAGCAAGATTAGAAAGAGCATCAGCCTCAAACAAGGAAGTACTATATCTACTACTAATCTTGGTCCTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCT</genome_strand>
        <mrna_strand>GCACGAGCCGGCAACCAACTTTGTTCTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGAGGTGATTCCATTTGCTGTAGAAAATCACAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCAAGATTAGAAAGAGCATCAGCCTCAAACAAGGAAGTACTATATCTACTACTAATCTTGGTCCTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTTAATCCACATTCTTGCGCATGTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303940" ref_strand="+" ref_description="SGN-E303940 [cLEX-4-J19]">
      <seq>gcaaccaactttgttctgagaaaatacttcattgctagctgtagctcgacggacggcggtaagcagaacggccggaggtgattccatttgctgtagaaaatcacaaaatccaagcaagattagaaagagcatcagcctcaaacaaagaagtactatatctactactaatcttggtccttcattcacttgagatgtctttgtgtagacctccacttcctcgacttctgctgaataacgtctcgtgtatgagaaatgctcaacaaattttgcgccacataaatgtttccctccatgatggtggtgcactggtactaacaggcaccaatggctctggtaaatccacattcttgcgcatgttggctggtttctcaaaaccatcagctggtgagatactctggaatggccatgacattactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41153" stop="44265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41453" g_stop="41559" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41560" i_stop="43654" i_length="2095">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43655" g_stop="43965" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="418" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E303940" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41453" e_stop="41559"/>
          <exon e_start="43655" e_stop="43965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACCAACTTTGTTCTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGAGGTGATTCCATTTGCTGTAGAAAATCACAAAGTTCGTCTTTTGTCATCTCCATTTCTGTATTTGCTTTTCTATTTATTTTGGGAATTTCAGCTTGTGATCATAACTTGTTGGATGAAATGCTTATGATGTGTGAGTATTAATGGACTTTCATTCTTACCTTGTTTTGTTATACCGTATCTGTTAGATTGAATTGAAAAACTTGAAAAATTGGAAGAACGATGATTGTTTGGATTTAGATGTGTAATTAAGGATTGTATGCTGAATGATTGTCATTGAATTTATTGGTATTGATTGCTTTTTGTTAAAATCCATGTACACTTTACACTCTCTAGAGGCCAACTTTGTTGTTGTTAATCCCAATGTTTCAGTTTATGTGAGGTGTTTGTGTGGGCACCAAGTTTTTATTTAAGAAAATTGGGTACTTTTGTGAAAGACTAAAAGGAAAAAACAGTGACATAAATTGGGATATAGGATCACAATTTGTATATGTTTAGTGCATTCCACTCAATGCTGTAGATTTTACTGAGGAGTTTTGAATCATTTGGAATGTTAAGGGAAAAGTGAGACCTCTTATTTCACTTTCGTTGGTCTAATTTCCATGCGAATGCTTCGATCATCGAGATAAATTACTTTTCCTGTTATGGTAGGAAGTTGGTGCATTCAGTTGCCATATTTTTGTCTAATGTAGAAGGTAAGTCTTACCTGTATTTTGTTATTCATGAATTAATGTCGCTATACACACTTTTTTCCAAGAGAGGGAAGTGATGTTAAATTAATTCCAGGTATTTTTTTGCAAAAAGAACTTTCAAATGCCATAAGTGCAGACTGCAATTTTATCTTCCCAAATGTCATTCAGTTGGCTAGTGTGCTAACTTGATTGTTCTGGTAATATGTTTTGATTATTAAGAGAAGTATTAAAGGATCATTTGGACCAAGTACGGAATGGAAAACAAGCTCTCTAAACTACTAGGACTATCTAATTCATTCATGTCTTTTTTGAAGTACAGTCTGTGAATCTAAGATTTTCTTTCACTTTATATAACAAAAATTATATGTTAGCCTCAATTGAAGAGGAAATGACTAAGTCTAATTCTGCTAAGAGGGGTCTCTCTATTTTCATGAAGTTCTGAGATTTTCTGATGTGAGCCTTTGACTTTAGATTCCAAGAATTTGTATCCTAGTCTCAGTAGTTAAAAAAAGAAAGAATTAGTATCTTTTAGTCTCAGTAGAAGAGGAGTATGATTGCTCAGTTTCTCCTTTTCTTGGTTTTTTGTTTCTTCTTAAATCTTTCAAATCTAATGCTTCAAAGAATGATTCTTGTGGAACTAAATTTTCTTGTAAAAGTTGTTCATTCAACTTAATGACTTTTCTACCGATGCCATGTTAGAGTGTAACTGCTGTCAAGTTTCAAGTCGGTTAACTGTGTCTTACTTTGCGTGGTATCTGCACATTGCGGGACACGTTTATCGATTGTAATCTGATGAGAAAAATATGATTAGAGGCCTCCTTTCCTTTACCTTGTTTTCTGTGATACACACGAGCTACATTTAATAAAATATTGCAATTCTTGATGGTCCTTCTTGTTTAAGGGGAGAACTAGAAATGAGAATGATGTGGATTTCCCTTGCCTAAGAAATAAACTTTTTATATGATTTTGGTTGTTCAAGGGATAGGGGAGCTATGAGGAGGATGTGGAGCAAAGCTTTTTTCGGTTTCTCTAAATGTGCTTCTATGAAAAGAAATTCCATATGAGGGAAATTCAGTGACCTAGTAGCATTATAGAGTGTTACACATAGAAAACGAGTGAGAAATATCATGGAAGTCTTTCCTCTTTCCTCCTCTTCATTTTTCCTTTTCTGTTTTGGTTCTTCATAGTTTGTATAAAACATATGAGTAGATTTGATTGTGCTGCTTTCATGCCTGATTCGGAGTTCCAAATGATGTTATTTATGTGTTTAACCAATTGCTCATAATGCTTTTGTATCAGCAAGTAAACTTTGATTTGGCACAATTTGTTTCTATTTTGAACTGACTGGATACATTCAGTCACTGAAACTTGTGAATTTTTTCTACTTTTGCTTTTAATTTATCAGATTGCATAATATCTCTTGTAATTTCTTCTCAGATCCAAGCAAGATTAGAAAGAGCATCAGCCTCAAACAAGGAAGTACTATATCTACTACTAATCTTGGTCCTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGA</genome_strand>
        <mrna_strand>GCAACCAACTTTGTTCTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGAGGTGATTCCATTTGCTGTAGAAAATCACAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCAAGATTAGAAAGAGCATCAGCCTCAAACAAAGAAGTACTATATCTACTACTAATCTTGGTCCTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422773" ref_strand="+" ref_description="SGN-E422773 [STM-40-P20]">
      <seq>ctgagaaaatacttcattgctagctgtagctcgacggacggcggtaagcagaacggccgggggtgactccatttactgtagaaaatcacaaactccaagcaagatttgaaagagcatcagctgccttttattttctgttgctcaatcaaggaagtgttatatctactactaatctcggtccttcattcacttgaaatgtctttgcgtagacctccacttcctcgacttctgctgaacaatgtctcgtgtatgagaaatgctcaacaaattttgcgccacgtaaatgtttccctccatgatggtggtgcacttgtactaacaggcaccaatggctctggtaaatccacattcttgcgcatgttggctggtttctcaaaaccatcagctggtgagatactctggaatggccatgacattactgattcaggtgtttttcaacagtacaaacttcaactcaattggctgtctcttaaggacgccatcaaagagaagttcacggtcctcgacaatgttcaatggtttgaagttcttgaaggcaagcaaggaaggtctctgccagctttggaacttatggggcttggaagattagtaaacgataaagcacggatgctttctatgggtcaaaggaaaagggtccagctcgccagattgttagcaattgatcgacctatttggttgcttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41168" stop="44529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41468" g_stop="41559" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41560" i_stop="41619" i_length="60">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.827" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41620" g_stop="41658" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="129" r_length="37" r_score="0.436"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41659" i_stop="42660" i_length="1002">
            <donor d_prob="0.761" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42661" g_stop="42670" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="139" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42671" i_stop="43682" i_length="1012">
            <donor d_prob="0.797" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43683" g_stop="44229" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="686" r_length="547" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E422773" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41468" e_stop="41559"/>
          <exon e_start="41620" e_stop="41658"/>
          <exon e_start="42661" e_stop="42670"/>
          <exon e_start="43683" e_stop="44229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGAGGTGATTCCATTTGCTGTAGAAAATCACAAAGTTCGTCTTTTGTCATCTCCATTTCTGTATTTGCTTTTCTATTTATTTTGGGAATTTCAGCTTGTGATCATAACTTGTTGGATGAAATGCTTATGATGTGTGAGTATTAATGGACTTTCATTCTTACCTTGTTTTGTTATACCGTATCTGTTAGATTGAATTGAAAAACTTGAAAAATTGGAAGAACGATGATTGTTTGGATTTAGATGTGTAATTAAGGATTGTATGCTGAATGATTGTCATTGAATTTATTGGTATTGATTGCTTTTTGTTAAAATCCATGTACACTTTACACTCTCTAGAGGCCAACTTTGTTGTTGTTAATCCCAATGTTTCAGTTTATGTGAGGTGTTTGTGTGGGCACCAAGTTTTTATTTAAGAAAATTGGGTACTTTTGTGAAAGACTAAAAGGAAAAAACAGTGACATAAATTGGGATATAGGATCACAATTTGTATATGTTTAGTGCATTCCACTCAATGCTGTAGATTTTACTGAGGAGTTTTGAATCATTTGGAATGTTAAGGGAAAAGTGAGACCTCTTATTTCACTTTCGTTGGTCTAATTTCCATGCGAATGCTTCGATCATCGAGATAAATTACTTTTCCTGTTATGGTAGGAAGTTGGTGCATTCAGTTGCCATATTTTTGTCTAATGTAGAAGGTAAGTCTTACCTGTATTTTGTTATTCATGAATTAATGTCGCTATACACACTTTTTTCCAAGAGAGGGAAGTGATGTTAAATTAATTCCAGGTATTTTTTTGCAAAAAGAACTTTCAAATGCCATAAGTGCAGACTGCAATTTTATCTTCCCAAATGTCATTCAGTTGGCTAGTGTGCTAACTTGATTGTTCTGGTAATATGTTTTGATTATTAAGAGAAGTATTAAAGGATCATTTGGACCAAGTACGGAATGGAAAACAAGCTCTCTAAACTACTAGGACTATCTAATTCATTCATGTCTTTTTTGAAGTACAGTCTGTGAATCTAAGATTTTCTTTCACTTTATATAACAAAAATTATATGTTAGCCTCAATTGAAGAGGAAATGACTAAGTCTAATTCTGCTAAGAGGGGTCTCTCTATTTTCATGAAGTTCTGAGATTTTCTGATGTGAGCCTTTGACTTTAGATTCCAAGAATTTGTATCCTAGTCTCAGTAGTTAAAAAAAGAAAGAATTAGTATCTTTTAGTCTCAGTAGAAGAGGAGTATGATTGCTCAGTTTCTCCTTTTCTTGGTTTTTTGTTTCTTCTTAAATCTTTCAAATCTAATGCTTCAAAGAATGATTCTTGTGGAACTAAATTTTCTTGTAAAAGTTGTTCATTCAACTTAATGACTTTTCTACCGATGCCATGTTAGAGTGTAACTGCTGTCAAGTTTCAAGTCGGTTAACTGTGTCTTACTTTGCGTGGTATCTGCACATTGCGGGACACGTTTATCGATTGTAATCTGATGAGAAAAATATGATTAGAGGCCTCCTTTCCTTTACCTTGTTTTCTGTGATACACACGAGCTACATTTAATAAAATATTGCAATTCTTGATGGTCCTTCTTGTTTAAGGGGAGAACTAGAAATGAGAATGATGTGGATTTCCCTTGCCTAAGAAATAAACTTTTTATATGATTTTGGTTGTTCAAGGGATAGGGGAGCTATGAGGAGGATGTGGAGCAAAGCTTTTTTCGGTTTCTCTAAATGTGCTTCTATGAAAAGAAATTCCATATGAGGGAAATTCAGTGACCTAGTAGCATTATAGAGTGTTACACATAGAAAACGAGTGAGAAATATCATGGAAGTCTTTCCTCTTTCCTCCTCTTCATTTTTCCTTTTCTGTTTTGGTTCTTCATAGTTTGTATAAAACATATGAGTAGATTTGATTGTGCTGCTTTCATGCCTGATTCGGAGTTCCAAATGATGTTATTTATGTGTTTAACCAATTGCTCATAATGCTTTTGTATCAGCAAGTAAACTTTGATTTGGCACAATTTGTTTCTATTTTGAACTGACTGGATACATTCAGTCACTGAAACTTGTGAATTTTTTCTACTTTTGCTTTTAATTTATCAGATTGCATAATATCTCTTGTAATTTCTTCTCAGATCCAAGCAAGATTAGAAAGAGCATCAGCCTCAAACAAGGAAGTACTATATCTACTACTAATCTTGGTCCTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTTGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGGAAGTCGCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTACAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGA</genome_strand>
        <mrna_strand>CTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGGGGTGACTCCATTTACTGTAGAAAATCACAAA............................................................C-TCCAAGCAAGATTTGAAAGAGCATCAGC-TGCCTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAATCAAGGAAGTGTTATATCTACTACTAATCTCGGTCCTTCATTCACTTGAAATGTCTTTGCGTAGACCTCCACTTCCTCGACTTCTGCTGAACAATGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACGTAAATGTTTCCCTCCATGATGGTGGTGCACTTGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTCGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGAAGGTCTCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTCCAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449038" ref_strand="+" ref_description="SGN-E449038 [cSTS-5-M15]">
      <seq>ctgagaaaatacttcattgctagctgtagctcgacggacggcggtaagcagaacggccgggggtgactccatttactgtagaaaatcacaaactccaagcaagatttgaaagagcatcagctgccttttattttctgttgctcaatcaaggaagtgttatatctactactaatctcggtccttcattcacttgaaatgtctttgcgtagacctccacttcctcgacttctgctgaacaatgtctcgtgtatgagaaatgctcaacaaattttgcgccacgtaaatgtttccctccatgatggtggtgcacttgtactaacaggcaccaatggctctggtaaatccacattcttgcgcatgttggctggtttctcaaaaccatcagctggtgagatactctggaatggccatgacattactgattcaggtgtttttcaacagtacaaacttcaactcaattggctgtctcttaaggacgccatcaaagagaagttcacggtcctcgacaatgttcaatggtttgaagttcttgaaggcaagcaaggaaggtctctgccagctttggaacttatggggcttggaagattagtaaacgataaagcacggatgctttctatgggtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41168" stop="44467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41468" g_stop="41559" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41560" i_stop="41619" i_length="60">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.827" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41620" g_stop="41658" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="129" r_length="37" r_score="0.436"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41659" i_stop="42660" i_length="1002">
            <donor d_prob="0.761" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42661" g_stop="42670" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="139" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42671" i_stop="43682" i_length="1012">
            <donor d_prob="0.797" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43683" g_stop="44167" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="624" r_length="485" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E449038" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41468" e_stop="41559"/>
          <exon e_start="41620" e_stop="41658"/>
          <exon e_start="42661" e_stop="42670"/>
          <exon e_start="43683" e_stop="44167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGAGGTGATTCCATTTGCTGTAGAAAATCACAAAGTTCGTCTTTTGTCATCTCCATTTCTGTATTTGCTTTTCTATTTATTTTGGGAATTTCAGCTTGTGATCATAACTTGTTGGATGAAATGCTTATGATGTGTGAGTATTAATGGACTTTCATTCTTACCTTGTTTTGTTATACCGTATCTGTTAGATTGAATTGAAAAACTTGAAAAATTGGAAGAACGATGATTGTTTGGATTTAGATGTGTAATTAAGGATTGTATGCTGAATGATTGTCATTGAATTTATTGGTATTGATTGCTTTTTGTTAAAATCCATGTACACTTTACACTCTCTAGAGGCCAACTTTGTTGTTGTTAATCCCAATGTTTCAGTTTATGTGAGGTGTTTGTGTGGGCACCAAGTTTTTATTTAAGAAAATTGGGTACTTTTGTGAAAGACTAAAAGGAAAAAACAGTGACATAAATTGGGATATAGGATCACAATTTGTATATGTTTAGTGCATTCCACTCAATGCTGTAGATTTTACTGAGGAGTTTTGAATCATTTGGAATGTTAAGGGAAAAGTGAGACCTCTTATTTCACTTTCGTTGGTCTAATTTCCATGCGAATGCTTCGATCATCGAGATAAATTACTTTTCCTGTTATGGTAGGAAGTTGGTGCATTCAGTTGCCATATTTTTGTCTAATGTAGAAGGTAAGTCTTACCTGTATTTTGTTATTCATGAATTAATGTCGCTATACACACTTTTTTCCAAGAGAGGGAAGTGATGTTAAATTAATTCCAGGTATTTTTTTGCAAAAAGAACTTTCAAATGCCATAAGTGCAGACTGCAATTTTATCTTCCCAAATGTCATTCAGTTGGCTAGTGTGCTAACTTGATTGTTCTGGTAATATGTTTTGATTATTAAGAGAAGTATTAAAGGATCATTTGGACCAAGTACGGAATGGAAAACAAGCTCTCTAAACTACTAGGACTATCTAATTCATTCATGTCTTTTTTGAAGTACAGTCTGTGAATCTAAGATTTTCTTTCACTTTATATAACAAAAATTATATGTTAGCCTCAATTGAAGAGGAAATGACTAAGTCTAATTCTGCTAAGAGGGGTCTCTCTATTTTCATGAAGTTCTGAGATTTTCTGATGTGAGCCTTTGACTTTAGATTCCAAGAATTTGTATCCTAGTCTCAGTAGTTAAAAAAAGAAAGAATTAGTATCTTTTAGTCTCAGTAGAAGAGGAGTATGATTGCTCAGTTTCTCCTTTTCTTGGTTTTTTGTTTCTTCTTAAATCTTTCAAATCTAATGCTTCAAAGAATGATTCTTGTGGAACTAAATTTTCTTGTAAAAGTTGTTCATTCAACTTAATGACTTTTCTACCGATGCCATGTTAGAGTGTAACTGCTGTCAAGTTTCAAGTCGGTTAACTGTGTCTTACTTTGCGTGGTATCTGCACATTGCGGGACACGTTTATCGATTGTAATCTGATGAGAAAAATATGATTAGAGGCCTCCTTTCCTTTACCTTGTTTTCTGTGATACACACGAGCTACATTTAATAAAATATTGCAATTCTTGATGGTCCTTCTTGTTTAAGGGGAGAACTAGAAATGAGAATGATGTGGATTTCCCTTGCCTAAGAAATAAACTTTTTATATGATTTTGGTTGTTCAAGGGATAGGGGAGCTATGAGGAGGATGTGGAGCAAAGCTTTTTTCGGTTTCTCTAAATGTGCTTCTATGAAAAGAAATTCCATATGAGGGAAATTCAGTGACCTAGTAGCATTATAGAGTGTTACACATAGAAAACGAGTGAGAAATATCATGGAAGTCTTTCCTCTTTCCTCCTCTTCATTTTTCCTTTTCTGTTTTGGTTCTTCATAGTTTGTATAAAACATATGAGTAGATTTGATTGTGCTGCTTTCATGCCTGATTCGGAGTTCCAAATGATGTTATTTATGTGTTTAACCAATTGCTCATAATGCTTTTGTATCAGCAAGTAAACTTTGATTTGGCACAATTTGTTTCTATTTTGAACTGACTGGATACATTCAGTCACTGAAACTTGTGAATTTTTTCTACTTTTGCTTTTAATTTATCAGATTGCATAATATCTCTTGTAATTTCTTCTCAGATCCAAGCAAGATTAGAAAGAGCATCAGCCTCAAACAAGGAAGTACTATATCTACTACTAATCTTGGTCCTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTTGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGGAAGTCGCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAA</genome_strand>
        <mrna_strand>CTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGGGGTGACTCCATTTACTGTAGAAAATCACAAA............................................................C-TCCAAGCAAGATTTGAAAGAGCATCAGC-TGCCTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAATCAAGGAAGTGTTATATCTACTACTAATCTCGGTCCTTCATTCACTTGAAATGTCTTTGCGTAGACCTCCACTTCCTCGACTTCTGCTGAACAATGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACGTAAATGTTTCCCTCCATGATGGTGGTGCACTTGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTCGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGAAGGTCTCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332420" ref_strand="+" ref_description="SGN-E332420 [cTOD-17-K12]">
      <seq>cggacggcggtaagcagaacggccggaggtgattccatttgctgtagaaaatcacaaaatccaagcaagattagaaagagcatcagcctcaaacaaggaagtactatatctactactaatcttggtccttcattcacttgagatgtctttgtgtagacctccacttcctcgacttctgctgaataacgtctcgtgtatgagaaatgctcaacaaattttgcgccacataaatgtttccctccatgatggtggtgcactggtactaacaggcaccaatggctctggtaaatccacattcttgcgcatgttggctggtttctcaaaaccatcagctggtgagatactctggaatggccatgacattactgattcaggtgtttttcaacagtacaaacttcaactcaattggctgtctcttaaggacgccatcaaagagaagttcacggtccttgacaatgttcaatggtttgaagttcttgaaggcaagcaagggaagtcgctgccagctttggaacttatggggcttggaagattagtaaacgataaagcacggatgctttctatgggtcaaaggaaaagggtacagctcgccagattgttagcaattgatcgacctatttggttgcttgatgaaccttcagtagcattggatgacgaaggtgtgaaattgctagagtatattattgcagagcacaggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41202" stop="44598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41502" g_stop="41559" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41560" i_stop="43654" i_length="2095">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43655" g_stop="44298" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="702" r_length="644" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E332420" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41502" e_stop="41559"/>
          <exon e_start="43655" e_stop="44298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACGGCGGTAAGCAGAACGGCCGGAGGTGATTCCATTTGCTGTAGAAAATCACAAAGTTCGTCTTTTGTCATCTCCATTTCTGTATTTGCTTTTCTATTTATTTTGGGAATTTCAGCTTGTGATCATAACTTGTTGGATGAAATGCTTATGATGTGTGAGTATTAATGGACTTTCATTCTTACCTTGTTTTGTTATACCGTATCTGTTAGATTGAATTGAAAAACTTGAAAAATTGGAAGAACGATGATTGTTTGGATTTAGATGTGTAATTAAGGATTGTATGCTGAATGATTGTCATTGAATTTATTGGTATTGATTGCTTTTTGTTAAAATCCATGTACACTTTACACTCTCTAGAGGCCAACTTTGTTGTTGTTAATCCCAATGTTTCAGTTTATGTGAGGTGTTTGTGTGGGCACCAAGTTTTTATTTAAGAAAATTGGGTACTTTTGTGAAAGACTAAAAGGAAAAAACAGTGACATAAATTGGGATATAGGATCACAATTTGTATATGTTTAGTGCATTCCACTCAATGCTGTAGATTTTACTGAGGAGTTTTGAATCATTTGGAATGTTAAGGGAAAAGTGAGACCTCTTATTTCACTTTCGTTGGTCTAATTTCCATGCGAATGCTTCGATCATCGAGATAAATTACTTTTCCTGTTATGGTAGGAAGTTGGTGCATTCAGTTGCCATATTTTTGTCTAATGTAGAAGGTAAGTCTTACCTGTATTTTGTTATTCATGAATTAATGTCGCTATACACACTTTTTTCCAAGAGAGGGAAGTGATGTTAAATTAATTCCAGGTATTTTTTTGCAAAAAGAACTTTCAAATGCCATAAGTGCAGACTGCAATTTTATCTTCCCAAATGTCATTCAGTTGGCTAGTGTGCTAACTTGATTGTTCTGGTAATATGTTTTGATTATTAAGAGAAGTATTAAAGGATCATTTGGACCAAGTACGGAATGGAAAACAAGCTCTCTAAACTACTAGGACTATCTAATTCATTCATGTCTTTTTTGAAGTACAGTCTGTGAATCTAAGATTTTCTTTCACTTTATATAACAAAAATTATATGTTAGCCTCAATTGAAGAGGAAATGACTAAGTCTAATTCTGCTAAGAGGGGTCTCTCTATTTTCATGAAGTTCTGAGATTTTCTGATGTGAGCCTTTGACTTTAGATTCCAAGAATTTGTATCCTAGTCTCAGTAGTTAAAAAAAGAAAGAATTAGTATCTTTTAGTCTCAGTAGAAGAGGAGTATGATTGCTCAGTTTCTCCTTTTCTTGGTTTTTTGTTTCTTCTTAAATCTTTCAAATCTAATGCTTCAAAGAATGATTCTTGTGGAACTAAATTTTCTTGTAAAAGTTGTTCATTCAACTTAATGACTTTTCTACCGATGCCATGTTAGAGTGTAACTGCTGTCAAGTTTCAAGTCGGTTAACTGTGTCTTACTTTGCGTGGTATCTGCACATTGCGGGACACGTTTATCGATTGTAATCTGATGAGAAAAATATGATTAGAGGCCTCCTTTCCTTTACCTTGTTTTCTGTGATACACACGAGCTACATTTAATAAAATATTGCAATTCTTGATGGTCCTTCTTGTTTAAGGGGAGAACTAGAAATGAGAATGATGTGGATTTCCCTTGCCTAAGAAATAAACTTTTTATATGATTTTGGTTGTTCAAGGGATAGGGGAGCTATGAGGAGGATGTGGAGCAAAGCTTTTTTCGGTTTCTCTAAATGTGCTTCTATGAAAAGAAATTCCATATGAGGGAAATTCAGTGACCTAGTAGCATTATAGAGTGTTACACATAGAAAACGAGTGAGAAATATCATGGAAGTCTTTCCTCTTTCCTCCTCTTCATTTTTCCTTTTCTGTTTTGGTTCTTCATAGTTTGTATAAAACATATGAGTAGATTTGATTGTGCTGCTTTCATGCCTGATTCGGAGTTCCAAATGATGTTATTTATGTGTTTAACCAATTGCTCATAATGCTTTTGTATCAGCAAGTAAACTTTGATTTGGCACAATTTGTTTCTATTTTGAACTGACTGGATACATTCAGTCACTGAAACTTGTGAATTTTTTCTACTTTTGCTTTTAATTTATCAGATTGCATAATATCTCTTGTAATTTCTTCTCAGATCCAAGCAAGATTAGAAAGAGCATCAGCCTCAAACAAGGAAGTACTATATCTACTACTAATCTTGGTCCTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTTGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGGAAGTCGCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTACAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGAACCTTCAGTAGCATTGGATGACGAAGGTGTGAAATTGCTAGAGTATATTATTGCAGAGCACAGGAAAAA</genome_strand>
        <mrna_strand>CGGACGGCGGTAAGCAGAACGGCCGGAGGTGATTCCATTTGCTGTAGAAAATCACAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCAAGATTAGAAAGAGCATCAGCCTCAAACAAGGAAGTACTATATCTACTACTAATCTTGGTCCTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTTGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGGAAGTCGCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTACAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGAACCTTCAGTAGCATTGGATGACGAAGGTGTGAAATTGCTAGAGTATATTATTGCAGAGCACAGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248971" ref_strand="+" ref_description="SGN-E248971 [cLEF-49-N6]">
      <seq>cttcattcacttgagatgtctttgtgtagacctccacttgctcgacttctgctgaataacgtctcgtgtatgagaaatgctcaacaaattttgcgccacataaatgtttccctccatgatggtggtgcactggtactaacaggcaccaatggctctggtaaatccacattcttgcgcatgttggctggtttctcaaaaccatcagctggtgagatactctggaatggccatgacattactgattcaggtgtttttcaacagtacaaacttcaactcaattggctgtctcttaaggacgccatcaaagagaagttcacggtccttgacaatgttcaatggtttgaagttcttgaaggcaagcaagggaagtcgctgccagctttggaacttatggggcttggaagattagtaaacgataaagcacggatgctttctatgggtcaaaggaaaagggtacagctcgccagattgttagcaattgatcgacctatttggttgcttgatgaaccttcagtagcattggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="43424" stop="44550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43724" g_stop="44250" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E248971" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43724" e_stop="44250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTTGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGGAAGTCGCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTACAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGAACCTTCAGTAGCATTGGATGA</genome_strand>
        <mrna_strand>CTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTGCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTTGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGGAAGTCGCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTACAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGAACCTTCAGTAGCATTGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273738" ref_strand="+" ref_description="SGN-E273738 [cLEN-7-C10]">
      <seq>agattagtaaacgataaagcacggatgctttctatgggtcaaaggaaaagggtacagctcgccagattgttagcaattgatcgacctatttggttgcttgatgaaccttcagtagcattggatgacgaaggtgtgaaattgctagagtatattattgcagagcacaggaaaaaaggtggtattgtcattgtcgccacccatctgcctattcagatcgaggatgcaatgtttttaaggttgccaccaaggttccctagaaggatgactttagtagacatgcttgatagaggcggcctcgactgatcattaagaagataaagagtccaatctaaagaagctctccaatgaattcaaaagggagctgttttctctttcattcttgatgattgcaagaatttctctatctttactttgttagctcctcctcaatttgcacttcactttgcccctaaaatgtgctgagaacacatgccctcattggtctaatggtatgaacggcaacattggatgtgtggattagacgaatgtcacgagtttgaaattcttgcagacaaaagcttgtaatttaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="43826" stop="44997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44126" g_stop="44697" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E273738" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44126" e_stop="44697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTACAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGAACCTTCAGTAGCATTGGATGACGAAGGTGTGAAATTGCTAGAGTATATTATTGCAGAGCACAGGAAAAAAGGTGGTATTGTCATTGTCGCCACCCATCTGCCTATTCAGATCGAGGATGCAATGTTTTTAAGGTTGCCACCAAGGTTCCCTAGAAGGATGACTTTAGTAGACATGCTTGATAGAGGCGGCCTCGACTGATCATTAAGAAGATAAAGAGTCCAATCTAAAGAAGCTCTCCAATGAATTCAAAAGGGAGCTGTTTTCTCTTTCATTCTTGATGATTGCAAGAATTTCTCTATCTTTACTTTGTTAGCTCCTCCTCAATTTGCACTTCACTTTGCCCCTAAAATGTGCTGAGAACACATGCCCTCATTGGTCTAATGGTATGAACGGCAACATTGGATGTGTGGATTAGACGAATGTCACGAGTTTGAATTCGTTGCAGACAAAAGCTTGTAATTTAAGCA</genome_strand>
        <mrna_strand>AGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTACAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGAACCTTCAGTAGCATTGGATGACGAAGGTGTGAAATTGCTAGAGTATATTATTGCAGAGCACAGGAAAAAAGGTGGTATTGTCATTGTCGCCACCCATCTGCCTATTCAGATCGAGGATGCAATGTTTTTAAGGTTGCCACCAAGGTTCCCTAGAAGGATGACTTTAGTAGACATGCTTGATAGAGGCGGCCTCGACTGATCATTAAGAAGATAAAGAGTCCAATCTAAAGAAGCTCTCCAATGAATTCAAAAGGGAGCTGTTTTCTCTTTCATTCTTGATGATTGCAAGAATTTCTCTATCTTTACTTTGTTAGCTCCTCCTCAATTTGCACTTCACTTTGCCCCTAAAATGTGCTGAGAACACATGCCCTCATTGGTCTAATGGTATGAACGGCAACATTGGATGTGTGGATTAGACGAATGTCACGAGTTTGAAATTCTTGCAGACAAAAGCTTGTAATTTAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203091" ref_strand="+" ref_description="SGN-E203091 [cLEB-3-H15](-)">
      <seq>agctgttttctctttcattcttgatgattgcaagaatttctctatctttactttgttagctcctcctcaatttgcacttcactttgcccctaaaatgtgctgagaacacatgccctcattggtctaatggtatgaacggcaacattggatgtgtggattagacgaatgtcacgagtttgaattcgttgcagacaaaagcttgtaatttaagcagcaaggaggggtaagttcattatccatcgagtttcgaaccctgtcggccggcactcggggatttctagtttttttgtaaaagaatttttgtagataacaccttgcatcagattatcagatgttgcgtttctcttatacaacatcccaaatagctttattgtttgtatgctagtttgaaccacagaattcagtacttatttggcttttgtaacaactttggacattacaatataagataagtcttagctttgttttgtcagcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44185" stop="45966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44485" g_stop="44960" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44961" i_stop="45657" i_length="697">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45658" g_stop="45673" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="492" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E203091" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44485" e_stop="44960"/>
          <exon e_start="45658" e_stop="45673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGTTTTCTCTTTCATTCTTGATGATTGCAAGAATTTCTCTATCTTTACTTTGTTAGCTCCTCCTCAATTTGCACTTCACTTTGCCCCTAAAATGTGCTGAGAACACATGCCCTCATTGGTCTAATGGTATGAACGGCAACATTGGATGTGTGGATTAGACGAATGTCACGAGTTTGAATTCGTTGCAGACAAAAGCTTGTAATTTAAGCAGCAAGGAGGGGTAAGTTCATTATCCATCGAGTTTCGAACCCTGTCGGCCGGCACTCGGGGATTTCTAGTTTTTTTGTAAAAGAATTTTTGTAGATAACACCTTGCATCAGATTATCAGATGTTGCGTTTCTCTTATACAACATCCCAAATAGCTTTATTGTTTGTATGCTAGTTTGAACCACAGAATTCAGTACTTATTTGGCTTTTGTAACAACTTTGGACATTACAATATAAGATAAGTCTTAGCTTTGTTTTGTCAGCAAATTGTGGGTACGATTGGATTAGTATTTTTTTTTTTTGGTTGAAAGTTTAATTTCCGATTTTTCACTTCCTATCTACATTTTGAATATATAAAACTTTGAAGTATTTATTCTTGATGCAATTATCGAACAAGCGTGATAGTTACCTACATAGTCTAATTCATGATTGCAACATTACAATTACATAACAAGCACATGTTAGTGAGATATAAATTTAAATTAGTTATTTTTTTTATACTTCAAAATTTAAAAATATACGAGGAGAGAACGAAATTCATGTCATAAATGAATAATTTGGAGTTCATATTCATCTATTTATATATGAAAAAAAGCCCCTATCAACACATGTATTCGACAACTTAATTCATATTCGATTAAAAAATGGATCAATAATGCACTACTCCGTGACGTTTTATATTGCTCCATCTAGTTAATTTTATGAGCATTTTAATGCCAGAAAATAAGTTGATTGCATTTTTGGTTCAATAAAATTGAAATGATAGAAGTACATTTTTTTTATAGCCAAATTTAATAGATTAACTATTTTTAAGTTTTTAAAAAAATCTTCTTCCATTTTAGAAAAATCACGTGGTCACCATGTGCTCAACACTAAATCCACAAGATCTCTGTGAGTGGTTCAATTTTCTTTTCAAAAATATAAGTTTTCTGGGATTTTAGTTTTATATCTGCAAAAAAAAAAAAAACAAAAAAAAAAA</genome_strand>
        <mrna_strand>AGCTGTTTTCTCTTTCATTCTTGATGATTGCAAGAATTTCTCTATCTTTACTTTGTTAGCTCCTCCTCAATTTGCACTTCACTTTGCCCCTAAAATGTGCTGAGAACACATGCCCTCATTGGTCTAATGGTATGAACGGCAACATTGGATGTGTGGATTAGACGAATGTCACGAGTTTGAATTCGTTGCAGACAAAAGCTTGTAATTTAAGCAGCAAGGAGGGGTAAGTTCATTATCCATCGAGTTTCGAACCCTGTCGGCCGGCACTCGGGGATTTCTAGTTTTTTTGTAAAAGAATTTTTGTAGATAACACCTTGCATCAGATTATCAGATGTTGCGTTTCTCTTATACAACATCCCAAATAGCTTTATTGTTTGTATGCTAGTTTGAACCACAGAATTCAGTACTTATTTGGCTTTTGTAACAACTTTGGACATTACAATATAAGATAAGTCTTAGCTTTGTTTTGTCAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277232" ref_strand="-" ref_description="SGN-E277232 [cLEL-3-K7]">
      <seq>gtaaaagaatttttgtatataacaccttgcatcagattatcagatgttgcgtttctcttatacaacatcccaaatagctttattgtttgtatgctagtttgaaccacagaattcagtacttatttggcttttgtaacaactttgtacattgcgatataagataagtcttaaaaattctcccgtcagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44473" stop="45965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44773" g_stop="44942" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44943" i_stop="45536" i_length="594">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45537" g_stop="45548" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="182" r_length="12" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45549" i_stop="45642" i_length="94">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45643" g_stop="45664" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="204" r_length="22" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E277232" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>204</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277232" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44773" e_stop="44942"/>
          <exon e_start="45537" e_stop="45548"/>
          <exon e_start="45643" e_stop="45664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAAGAATTTTTGTAGATAACACCTTGCATCAGATTATCAGATGTTGCGTTTCTCTTATACAACATCCCAAATAGCTTTATTGTTTGTATGCTAGTTTGAACCACAGAATTCAGTACTTATTTGGCTTTTGTAACAACTTTGGACATTACAATATAAGATAAGTCTTAGCTTTGTTTTGTCAGCAAATTGTGGGTACGATTGGATTAGTATTTTTTTTTTTTGGTTGAAAGTTTAATTTCCGATTTTTCACTTCCTATCTACATTTTGAATATATAAAACTTTGAAGTATTTATTCTTGATGCAATTATCGAACAAGCGTGATAGTTACCTACATAGTCTAATTCATGATTGCAACATTACAATTACATAACAAGCACATGTTAGTGAGATATAAATTTAAATTAGTTATTTTTTTTATACTTCAAAATTTAAAAATATACGAGGAGAGAACGAAATTCATGTCATAAATGAATAATTTGGAGTTCATATTCATCTATTTATATATGAAAAAAAGCCCCTATCAACACATGTATTCGACAACTTAATTCATATTCGATTAAAAAATGGATCAATAATGCACTACTCCGTGACGTTTTATATTGCTCCATCTAGTTAATTTTATGAGCATTTTAATGCCAGAAAATAAGTTGATTGCATTTTTGGTTCAATAAAATTGAAATGATAGAAGTACATTTTTTTTATAGCCAAATTTAATAGATTAACTATTTTTAAGTTTTTAAAAAAATCTTCTTCCATTTTAGAAAAATCACGTGGTCACCATGTGCTCAACACTAAATCCACAAGATCTCTGTGAGTGGTTCAATTTTCTTTTCAAAAATATAAGTTTTCTGGGATTTTAGTTTTATATCTGCAAAAAAAAAAAAAACAA</genome_strand>
        <mrna_strand>GTAAAAGAATTTTTGTATATAACACCTTGCATCAGATTATCAGATGTTGCGTTTCTCTTATACAACATCCCAAATAGCTTTATTGTTTGTATGCTAGTTTGAACCACAGAATTCAGTACTTATTTGGCTTTTGTAACAACTTTGTACATTGCGATATAAGATAAGTCTTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCTCCCG..............................................................................................TCAGCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317709" ref_strand="+" ref_description="SGN-E317709 [cTOB-8-F15]">
      <seq>tgggttttattgaaaaatgatgaagaaatcatgggtttgtactttgattactcaattttgtttatgtttgtctctttttcttgttcttaacttgtgtcaaaatcagaagccaatgataaggaatggaaatgtgaatgatcttcccatggatatatattttataagtgttacagggggtattagaactcttgaagagcagacccttcttctcaaacaggtggagaaggtagcaaaaaagttcaatgcaagattcgctatcaacataagcgaacttggggaagatgatcctcttatgcaaaatgctacttggcgttttccttccgtgaagatcccctggtactctactcgagctctcgaaggacaaggggtgaatcactaccttaaacaattcaaatttgcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="45382" stop="48131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45682" g_stop="45898" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45899" i_stop="47006" i_length="1108">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.841" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47007" g_stop="47090" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="301" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47091" i_stop="47604" i_length="514">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.700" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47605" g_stop="47639" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="336" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47640" i_stop="47763" i_length="124">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47764" g_stop="47831" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="404" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E317709" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45682" e_stop="45898"/>
          <exon e_start="47007" e_stop="47090"/>
          <exon e_start="47605" e_stop="47639"/>
          <exon e_start="47764" e_stop="47831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTTTTATTGAAAAATGATGAAGAAATCATGGGTTTGTACTTTGATTACTCAATTTTGTTTATGTTTGTCTCTTTTTCTTGTTCTTAACTTGTGTCAAAATCAGAAGCCAATGATAAGGAATGGAAATGTGAATGATCTTCCCATGGATATATATTTTATAAGTGTTACAGGGGGTATTAGAACTCTTGAAGAGCAGACCCTTCTTCTCAAACAGGTCAGTTTTTCAACCAATCTTTAAAAAATAGTTTTTTTTTGGGCTATTTGTGTAAAGGAATGATTTTTATTTGAATGTTACTTGTTGGGGTATGGAATCTTGAAATGTATTTTGGTTTGGTGAAGATTGTCAGTGTTAGTTCAGTCTGTAGTTGAAGAATGTACACTTAACAATCAATCTTGAAAAGAAAATCTATTGTTATTTGTGTAAAGGAATGATTTTTATTTGAATCTATGTTGATGCAATATGTGTTTTGAGCTGAATTTTGGTTTGGTGAAGATTGTAAGTTAGTTCAGTCTTTAGTTAGAGACCTATGCAACTCTGGATTTCTTTTCTTTTGGCATTAGTTATTGAGTTTGCTACACTTGAGCTGAGGGTCTTTCGGAAATAGTCTCTCTCTTTCTCCACGAGGTAGCGGTAAGGTCAGAGTACACCCTACCATCCCCAGACCCCACTTGTGGAATTCCACTGGATATGTTATTGTTAGCATTAGTTGATTGAGGGAAGGTAATCAGTTTCAGTGTATAGTTTGGAGGTGTACTCATTCAAGATTGGATCATATTCAAAATGATTAAAACATTTGTTAGAAGGTGCAAGTAGCACATGTTGATAGAATGAGAGAAAGTCGCTTGAAATGGTTTAGGTTTAGTTATGCATCTACCTCCTATGTGTGGGTCAGTAGGTGTGAAATTATGGCGAGTGAAGGTGTTAAAAAGGAAGAGTTAGATATAAAGTCACATGGAAGAAAGTAGTACGGAAAGACCTACAGTCTCTTGGCATCCATGTAGACTTAGAGAAAAATATGAGAAAATGGAAGAAAAGATCTATAAGCAATACCAGATAACTGGAAATATGTTTTGGACATGCTAGTACTGTTCCTTTAGCTCCCGTGTGTTTAGGAGTCTTTCCAAATCTTTGCATTGTTCTGGTAATTAGTTTTGTAAAAACTTGAAATTCAATAAATTCATGTTCTTGTGACAAAAGACGTCCTTCCTTTCTTTTGTTTTGATGTTCAAATGAAATTGTTACCTGTGATGAAATTCATCTCCTTTCTATCATGTTCATTTTTGGCTGATCAAGTTTTGGTGGAATCTGATATTCCATGAAGGTGGAGAAGGTAGCAAAAAAGTTCAATGCAAGATTCGTTATCAACATAAGCGAACTTGGGGAAGATGATCCTCTTATGCAAAATGTAAGCCCTCCAATGACTTATATGTGCATAATTCAGTGGTTATATGAATTTGAGCAATGATGCTAGTGTAGGATGTAACACGTAGCTACTTAATGAATTGTGTTCAAATTAGATAATTTACCAAGTTTTGATCACCTACTAACCAACCAATGTTTGATTTTGATTCATATTTTCAAGATACCTAAAGTTCTAAAGACATCTCGTTTTTTGTGTTCTACGGATTACATCTTGCTGCAACAATTGGGTACTGATTGTATCACTCTGGCTTCAGAAGAGTTGTTTAAACCATGCAATTTTGACATTATGTAGCACATTAACTTGTCAACTTCTCTTCTTGTGCAAAAGATGTTTGGCTTGTGAACGTGCTAATCTTTCATGTGGCAAGCTCCATGTAGTATTTACTACAAAAACACGTTAACTACTTTCTTTGATTAAAAGGAATCAATCTTAAATTTCCAATGAGGATTCGACGAAATGATAAATCGTAAATATCTAATGGTCTCTTCCTTGGCAGGCTACTTGGCGTTTTCCTTCCGTGAAGATCCCCTGGTATTCTCCTCTATGAATAAGCAGTTTGTTCCTCTTGGAATAACTTTTTTACTTTTAGATCTCGGTTTCATCATTTGAAATGATTTGTCTTTGCGGTTTCCCTTCAGCCATCCTAAACTTGTAGGTACTCTACTCGAGCTCTCGAAGGACAAGGGGTGAATCACTACCTTAAACAATTCAAATTTGCACATG</genome_strand>
        <mrna_strand>TGGGTTTTATTGAAAAATGATGAAGAAATCATGGGTTTGTACTTTGATTACTCAATTTTGTTTATGTTTGTCTCTTTTTCTTGTTCTTAACTTGTGTCAAAATCAGAAGCCAATGATAAGGAATGGAAATGTGAATGATCTTCCCATGGATATATATTTTATAAGTGTTACAGGGGGTATTAGAACTCTTGAAGAGCAGACCCTTCTTCTCAAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAAGGTAGCAAAAAAGTTCAATGCAAGATTCGCTATCAACATAAGCGAACTTGGGGAAGATGATCCTCTTATGCAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACTTGGCGTTTTCCTTCCGTGAAGATCCCCTG............................................................................................................................GTACTCTACTCGAGCTCTCGAAGGACAAGGGGTGAATCACTACCTTAAACAATTCAAATTTGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326267" ref_strand="+" ref_description="SGN-E326267 [cTOC-14-E19]">
      <seq>tgaagaaatcatggaagccaatgataaggaatggaaatgtgaatgatcttcccatggatatatattttataagtgttacagggggtattagaactcttgaagagcagacccttcttctcaaacaggtggagaaggtagcaaaaaagttcaatgcaagattcgttatcaacataagcgaacttggggaagatgatcctcttatgcaaaatgctacttggcgttttccttccgtgaagatcccctgccatcctaaacttgtaggtactctactcgagctctcgaaggacaaggggtgaatcactaccttaaacaattcaaatttgcacatggaagcttagatattatagttgtagatacaggattatatgaggtaaatgtttcttttttatctgattacttggccttttacgcacgttaccaagatggtgtcacttcagctttctgctcacttgattgtcacctatcgtctttgtaagatatatattgtatttttctatataatgttttacctaacccgctcctgataagtctgtagcttatgtgttggttttatctctggaagttcagaaaatttattccaaagacccttggttacatcaaatatgatggcatgtcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="45487" stop="48422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45702" g_stop="45715" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45716" i_stop="45787" i_length="72">
            <donor d_prob="0.774" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45788" g_stop="45898" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="125" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45899" i_stop="47006" i_length="1108">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47007" g_stop="47090" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="209" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47091" i_stop="47604" i_length="514">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.700" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47605" g_stop="47639" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="244" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47640" i_stop="47746" i_length="107">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.705" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47747" g_stop="48122" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="620" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E326267" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45702" e_stop="45715"/>
          <exon e_start="45788" e_stop="45898"/>
          <exon e_start="47007" e_stop="47090"/>
          <exon e_start="47605" e_stop="47639"/>
          <exon e_start="47747" e_stop="48122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAAATCATGGGTTTGTACTTTGATTACTCAATTTTGTTTATGTTTGTCTCTTTTTCTTGTTCTTAACTTGTGTCAAAATCAGAAGCCAATGATAAGGAATGGAAATGTGAATGATCTTCCCATGGATATATATTTTATAAGTGTTACAGGGGGTATTAGAACTCTTGAAGAGCAGACCCTTCTTCTCAAACAGGTCAGTTTTTCAACCAATCTTTAAAAAATAGTTTTTTTTTGGGCTATTTGTGTAAAGGAATGATTTTTATTTGAATGTTACTTGTTGGGGTATGGAATCTTGAAATGTATTTTGGTTTGGTGAAGATTGTCAGTGTTAGTTCAGTCTGTAGTTGAAGAATGTACACTTAACAATCAATCTTGAAAAGAAAATCTATTGTTATTTGTGTAAAGGAATGATTTTTATTTGAATCTATGTTGATGCAATATGTGTTTTGAGCTGAATTTTGGTTTGGTGAAGATTGTAAGTTAGTTCAGTCTTTAGTTAGAGACCTATGCAACTCTGGATTTCTTTTCTTTTGGCATTAGTTATTGAGTTTGCTACACTTGAGCTGAGGGTCTTTCGGAAATAGTCTCTCTCTTTCTCCACGAGGTAGCGGTAAGGTCAGAGTACACCCTACCATCCCCAGACCCCACTTGTGGAATTCCACTGGATATGTTATTGTTAGCATTAGTTGATTGAGGGAAGGTAATCAGTTTCAGTGTATAGTTTGGAGGTGTACTCATTCAAGATTGGATCATATTCAAAATGATTAAAACATTTGTTAGAAGGTGCAAGTAGCACATGTTGATAGAATGAGAGAAAGTCGCTTGAAATGGTTTAGGTTTAGTTATGCATCTACCTCCTATGTGTGGGTCAGTAGGTGTGAAATTATGGCGAGTGAAGGTGTTAAAAAGGAAGAGTTAGATATAAAGTCACATGGAAGAAAGTAGTACGGAAAGACCTACAGTCTCTTGGCATCCATGTAGACTTAGAGAAAAATATGAGAAAATGGAAGAAAAGATCTATAAGCAATACCAGATAACTGGAAATATGTTTTGGACATGCTAGTACTGTTCCTTTAGCTCCCGTGTGTTTAGGAGTCTTTCCAAATCTTTGCATTGTTCTGGTAATTAGTTTTGTAAAAACTTGAAATTCAATAAATTCATGTTCTTGTGACAAAAGACGTCCTTCCTTTCTTTTGTTTTGATGTTCAAATGAAATTGTTACCTGTGATGAAATTCATCTCCTTTCTATCATGTTCATTTTTGGCTGATCAAGTTTTGGTGGAATCTGATATTCCATGAAGGTGGAGAAGGTAGCAAAAAAGTTCAATGCAAGATTCGTTATCAACATAAGCGAACTTGGGGAAGATGATCCTCTTATGCAAAATGTAAGCCCTCCAATGACTTATATGTGCATAATTCAGTGGTTATATGAATTTGAGCAATGATGCTAGTGTAGGATGTAACACGTAGCTACTTAATGAATTGTGTTCAAATTAGATAATTTACCAAGTTTTGATCACCTACTAACCAACCAATGTTTGATTTTGATTCATATTTTCAAGATACCTAAAGTTCTAAAGACATCTCGTTTTTTGTGTTCTACGGATTACATCTTGCTGCAACAATTGGGTACTGATTGTATCACTCTGGCTTCAGAAGAGTTGTTTAAACCATGCAATTTTGACATTATGTAGCACATTAACTTGTCAACTTCTCTTCTTGTGCAAAAGATGTTTGGCTTGTGAACGTGCTAATCTTTCATGTGGCAAGCTCCATGTAGTATTTACTACAAAAACACGTTAACTACTTTCTTTGATTAAAAGGAATCAATCTTAAATTTCCAATGAGGATTCGACGAAATGATAAATCGTAAATATCTAATGGTCTCTTCCTTGGCAGGCTACTTGGCGTTTTCCTTCCGTGAAGATCCCCTGGTATTCTCCTCTATGAATAAGCAGTTTGTTCCTCTTGGAATAACTTTTTTACTTTTAGATCTCGGTTTCATCATTTGAAATGATTTGTCTTTGCGGTTTCCCTTCAGCCATCCTAAACTTGTAGGTACTCTACTCGAGCTCTCGAAGGACAAGGGGTGAATCACTACCTTAAACAATTCAAATTTGCACATGGAAGCTTAGATATTATAGTTGTAGATACAGGATTATATGAGGTAAATGTTTCTTTTTTATCTGATTACTTGGCCTTTTACGCACGTTACCAAGATGGTGTCACTTCAGCTTTCTGCTCACTTGATTGTCACCTATCGTCTTTGTAAGATATATATTGTATTTTTCTATATAATGTTTTACCTAACCCGCTCCTGATAAGTCTGTAGCTTATGTGTTGGTTTTATCTCTGGAAGTTCAGAAAATTTATTCCAAAGACCCTTGGTTACATCAAATATGATGGCATGTCATTTG</genome_strand>
        <mrna_strand>TGAAGAAATCATGG........................................................................AAGCCAATGATAAGGAATGGAAATGTGAATGATCTTCCCATGGATATATATTTTATAAGTGTTACAGGGGGTATTAGAACTCTTGAAGAGCAGACCCTTCTTCTCAAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAAGGTAGCAAAAAAGTTCAATGCAAGATTCGTTATCAACATAAGCGAACTTGGGGAAGATGATCCTCTTATGCAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACTTGGCGTTTTCCTTCCGTGAAGATCCCCTG...........................................................................................................CCATCCTAAACTTGTAGGTACTCTACTCGAGCTCTCGAAGGACAAGGGGTGAATCACTACCTTAAACAATTCAAATTTGCACATGGAAGCTTAGATATTATAGTTGTAGATACAGGATTATATGAGGTAAATGTTTCTTTTTTATCTGATTACTTGGCCTTTTACGCACGTTACCAAGATGGTGTCACTTCAGCTTTCTGCTCACTTGATTGTCACCTATCGTCTTTGTAAGATATATATTGTATTTTTCTATATAATGTTTTACCTAACCCGCTCCTGATAAGTCTGTAGCTTATGTGTTGGTTTTATCTCTGGAAGTTCAGAAAATTTATTCCAAAGACCCTTGGTTACATCAAATATGATGGCATGTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738829" ref_strand="+" ref_description="SGN-E738829 [LC15AE02]">
      <seq>atgaggttgcttcaaatggtgctggagatagtcagtcacaatggctgatagacacacttgaaaacagtgaaagcaaatggtgcattgctgttggatttcatccattggtagtttgcgaagaagatgctcctcaaacaaaactaaaacacaaattccagtctttacatggcctatttctgaagtatggtgtggatgcatatatcagtgcccctgtttgtgctgacaatgttgaggaaagacatattgcaaaatccaaaactagtattggcagatataaaggacctttgctgactaaagtgaatcagaacttgccttgctctatgggaagagtagatggattcctacttcacaaagccagtgctttagagattgtttcctatttagtcaccttggaaggtgatgttgtgcagaaattttttctccatcaaagaggcaaagatgttatgtagatattcctaaagcttcaaacatcatttaggggagccatttgcttcagatcgccttttttcgttctagttgtcgtcgtggaaaagaatgaaagaagatcatagatttaattaaatattagtgaagaatcgtaattctcgtcttcgttctcttttttttttccctttgcagagtaagggaaaatgaattacgaaagaagcagattcagtactgtgctcaagtttgaactaatagattcaacgtttatactcaagttgaaattcacatcttttgtacgatactgatgttcattttgaatatcactggatcctttccaaattttattgagatgtttatgctaatagagcgaatgtgttattctatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="48478" stop="50624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48780" g_stop="48853" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="79" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48854" i_stop="48940" i_length="87">
            <donor d_prob="0.409" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48941" g_stop="49052" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="191" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49053" i_stop="49406" i_length="354">
            <donor d_prob="0.682" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49407" g_stop="49537" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="322" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49538" i_stop="49744" i_length="207">
            <donor d_prob="0.134" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49745" g_stop="49793" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="371" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49794" i_stop="49880" i_length="87">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49881" g_stop="50324" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="815" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E738829" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48780" e_stop="48853"/>
          <exon e_start="48941" e_stop="49052"/>
          <exon e_start="49407" e_stop="49537"/>
          <exon e_start="49745" e_stop="49793"/>
          <exon e_start="49881" e_stop="50324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTTCAAATGGTGCTGGAGATAGTCAGTCACAATGGCTGATAGACACACTTGAAAACAGTGAAAGCAAATGGTACCTTCAGATTGCAATCTTTTACTCCAGAGAGAAAATATGTGACAGAAGTGATATCGTCTGACTAAAGTGATAGTGTAAATGCAGGTGCATTGCTGTTGGATTTCATCCATTGGTAGTTTGCGAAGAAGATGCTCCTCAAACAAAACTAAAACACAAATTCCAGTCTTTACATGGCCTATTTCTGAAGTATGGTGTGGTAAAGTCAAAATCTTAAACCTACATCTCCATTTCTTCAGTAATACCTTAACACCAGATACCATTTTTTCTGCAAAACCAGCTTTCTATATCTTAAATTTGATGACTTATAGCCCCCAAGGCTTTGGCGTAGTGGTAGAGCGCGGCACGTGATGTGTGGGTTGGGCGCACATCATTGGTTCGAATGTTGTTGTAGACTAAAAACTTGATACATAAGTGGAAAAGGATAGACGGATAGGACCATTATCCACCAAGTTTCAAACCGTGTGCTGTTAATCCTAGAGAATTTTCTCGAATCTGAAAACGAAGATTTTTTACTGACATATGTTGTTTTTGTTTTGCTTTTCCTGTTTAGGATGCATATATCAGTGCCCCTGTTTGTGCTGACAATGTTGAGGAAAGACATATTGCAAAATCCAAAACTAGTATTGGCAGATATAAAGGACCTTTGCTGACTAAAGTGAATCAGAACTTGCCTTGCTCTATGTAAGTAGTTTTACTTGAACATCAGTAGACTTTTGAGATTACATTGATCGGAACCTTCAAAAATGCTGCCCCACCCATGTTGGATCCTCCAAAAACGTATTACTGTCAGAGGATCCAACACATATCCAACAACATTTTTGAAGGATCCGAACAATATAGGACTCATCAAGCAAACACTTTACGACTATCATTTTTCATTTTTTTTAGGGGAAGAGTAGATGGATTCCTACTTCACAAAGCCAGTGCTTTAGAGATTGTGAGTGTTATTAAATTTTGCCTAATATTATACACAAGCCTCTTATATTATGTTCTTGATATTTTTAACAATTATTATTTCTAACAGGTTTCCTATTTAGTCACCTTGGAAGGTGATGTTGTGCAGAAATTTTTTCTCCATCAAAGAGGCAAAGATGTTATGTAGATATTCCTAAAGCTTCAAACATCATTTAGGGGAGCCATTTGCTTCAGATCGCCTTTTTTCGTTCTAGTTGTCGTCGTGGAAAAGAATGAAAGAAGATCATAGATTTAATTAAATATTAGTGAAGAATCGTAATTCTCGTCTTCGTTCTCTTTTTTTTTTCCCTTTGCAGAGTAAGGGAAAATGAATTACGAAAGAAGCAGATTCAGTACTGTGCTCAAGTTTGAACTAATAGATTCAACGTTTATACTCAAGTTGAAATTCACATCTTTTGTACGATACTGATGTTCATTTTGAATATCACTGGATCCTTTCCAAATTTTATTGAGATGTTTATGCTAATAGAGCGAATGTGTTATTCTATATTAT</genome_strand>
        <mrna_strand>GTTGCTTCAAATGGTGCTGGAGATAGTCAGTCACAATGGCTGATAGACACACTTGAAAACAGTGAAAGCAAATG.......................................................................................GTGCATTGCTGTTGGATTTCATCCATTGGTAGTTTGCGAAGAAGATGCTCCTCAAACAAAACTAAAACACAAATTCCAGTCTTTACATGGCCTATTTCTGAAGTATGGTGTG..................................................................................................................................................................................................................................................................................................................................................................GATGCATATATCAGTGCCCCTGTTTGTGCTGACAATGTTGAGGAAAGACATATTGCAAAATCCAAAACTAGTATTGGCAGATATAAAGGACCTTTGCTGACTAAAGTGAATCAGAACTTGCCTTGCTCTAT...............................................................................................................................................................................................................GGGAAGAGTAGATGGATTCCTACTTCACAAAGCCAGTGCTTTAGAGATT.......................................................................................GTTTCCTATTTAGTCACCTTGGAAGGTGATGTTGTGCAGAAATTTTTTCTCCATCAAAGAGGCAAAGATGTTATGTAGATATTCCTAAAGCTTCAAACATCATTTAGGGGAGCCATTTGCTTCAGATCGCCTTTTTTCGTTCTAGTTGTCGTCGTGGAAAAGAATGAAAGAAGATCATAGATTTAATTAAATATTAGTGAAGAATCGTAATTCTCGTCTTCGTTCTCTTTTTTTTTTCCCTTTGCAGAGTAAGGGAAAATGAATTACGAAAGAAGCAGATTCAGTACTGTGCTCAAGTTTGAACTAATAGATTCAACGTTTATACTCAAGTTGAAATTCACATCTTTTGTACGATACTGATGTTCATTTTGAATATCACTGGATCCTTTCCAAATTTTATTGAGATGTTTATGCTAATAGAGCGAATGTGTTATTCTATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737882" ref_strand="+" ref_description="SGN-E737882 [LC11CC11]">
      <seq>atgaggttgcttcaaatggtgctggagatagtcagtcacaatggctgatagacacacttgaaaacagtgaaagcaaatggtgcattgctgttggatttcatccattggtagtttgcgaagaagatgctcctcaaacaaaactaaaacacaaattccagtctttacatggcctatttctgaagtatggtgtggatgcatatatcagtgcccctgtttgtgctgacaatgttgaggaaagacatattgcaaaatccaaaactagtattggcagatataaaggacctttgctgactaaagtgaatcagaacttgccttgctctatgggaagagtagatggattcctacttcacaaagccagtgctttagagattgtttcctatttagtcaccttggaaggtgatgttgtgcagaaattttttctccatcaaagaggcaaagatgttatgtagatattcctaaagcttcaaacatcatttaggggagccatttgcttcagatcgccttttttcgttctagttgtcgtcgtggaaaagaatgaaagaagatcatagatttaattaaatattagtgaagaatcgtaattctcgtcttcgttctcttttttttttccctttgcagagtaagggaaaatgaattacgaaagaagcagattcagtactgtgctcaagtttgaactaatagattcaacgtttatactcaagttgaaattcacatcttttgtacgatactgatgttcattttgaatatcactggatcctttccaaattttattgagatgtttatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="48478" stop="50596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48780" g_stop="48853" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="79" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48854" i_stop="48940" i_length="87">
            <donor d_prob="0.409" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48941" g_stop="49052" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="191" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49053" i_stop="49406" i_length="354">
            <donor d_prob="0.682" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49407" g_stop="49537" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="322" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49538" i_stop="49744" i_length="207">
            <donor d_prob="0.134" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49745" g_stop="49793" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="371" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49794" i_stop="49880" i_length="87">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49881" g_stop="50296" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="787" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E737882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48780" e_stop="48853"/>
          <exon e_start="48941" e_stop="49052"/>
          <exon e_start="49407" e_stop="49537"/>
          <exon e_start="49745" e_stop="49793"/>
          <exon e_start="49881" e_stop="50296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTTCAAATGGTGCTGGAGATAGTCAGTCACAATGGCTGATAGACACACTTGAAAACAGTGAAAGCAAATGGTACCTTCAGATTGCAATCTTTTACTCCAGAGAGAAAATATGTGACAGAAGTGATATCGTCTGACTAAAGTGATAGTGTAAATGCAGGTGCATTGCTGTTGGATTTCATCCATTGGTAGTTTGCGAAGAAGATGCTCCTCAAACAAAACTAAAACACAAATTCCAGTCTTTACATGGCCTATTTCTGAAGTATGGTGTGGTAAAGTCAAAATCTTAAACCTACATCTCCATTTCTTCAGTAATACCTTAACACCAGATACCATTTTTTCTGCAAAACCAGCTTTCTATATCTTAAATTTGATGACTTATAGCCCCCAAGGCTTTGGCGTAGTGGTAGAGCGCGGCACGTGATGTGTGGGTTGGGCGCACATCATTGGTTCGAATGTTGTTGTAGACTAAAAACTTGATACATAAGTGGAAAAGGATAGACGGATAGGACCATTATCCACCAAGTTTCAAACCGTGTGCTGTTAATCCTAGAGAATTTTCTCGAATCTGAAAACGAAGATTTTTTACTGACATATGTTGTTTTTGTTTTGCTTTTCCTGTTTAGGATGCATATATCAGTGCCCCTGTTTGTGCTGACAATGTTGAGGAAAGACATATTGCAAAATCCAAAACTAGTATTGGCAGATATAAAGGACCTTTGCTGACTAAAGTGAATCAGAACTTGCCTTGCTCTATGTAAGTAGTTTTACTTGAACATCAGTAGACTTTTGAGATTACATTGATCGGAACCTTCAAAAATGCTGCCCCACCCATGTTGGATCCTCCAAAAACGTATTACTGTCAGAGGATCCAACACATATCCAACAACATTTTTGAAGGATCCGAACAATATAGGACTCATCAAGCAAACACTTTACGACTATCATTTTTCATTTTTTTTAGGGGAAGAGTAGATGGATTCCTACTTCACAAAGCCAGTGCTTTAGAGATTGTGAGTGTTATTAAATTTTGCCTAATATTATACACAAGCCTCTTATATTATGTTCTTGATATTTTTAACAATTATTATTTCTAACAGGTTTCCTATTTAGTCACCTTGGAAGGTGATGTTGTGCAGAAATTTTTTCTCCATCAAAGAGGCAAAGATGTTATGTAGATATTCCTAAAGCTTCAAACATCATTTAGGGGAGCCATTTGCTTCAGATCGCCTTTTTTCGTTCTAGTTGTCGTCGTGGAAAAGAATGAAAGAAGATCATAGATTTAATTAAATATTAGTGAAGAATCGTAATTCTCGTCTTCGTTCTCTTTTTTTTTTCCCTTTGCAGAGTAAGGGAAAATGAATTACGAAAGAAGCAGATTCAGTACTGTGCTCAAGTTTGAACTAATAGATTCAACGTTTATACTCAAGTTGAAATTCACATCTTTTGTACGATACTGATGTTCATTTTGAATATCACTGGATCCTTTCCAAATTTTATTGAGATGTTTATGCTA</genome_strand>
        <mrna_strand>GTTGCTTCAAATGGTGCTGGAGATAGTCAGTCACAATGGCTGATAGACACACTTGAAAACAGTGAAAGCAAATG.......................................................................................GTGCATTGCTGTTGGATTTCATCCATTGGTAGTTTGCGAAGAAGATGCTCCTCAAACAAAACTAAAACACAAATTCCAGTCTTTACATGGCCTATTTCTGAAGTATGGTGTG..................................................................................................................................................................................................................................................................................................................................................................GATGCATATATCAGTGCCCCTGTTTGTGCTGACAATGTTGAGGAAAGACATATTGCAAAATCCAAAACTAGTATTGGCAGATATAAAGGACCTTTGCTGACTAAAGTGAATCAGAACTTGCCTTGCTCTAT...............................................................................................................................................................................................................GGGAAGAGTAGATGGATTCCTACTTCACAAAGCCAGTGCTTTAGAGATT.......................................................................................GTTTCCTATTTAGTCACCTTGGAAGGTGATGTTGTGCAGAAATTTTTTCTCCATCAAAGAGGCAAAGATGTTATGTAGATATTCCTAAAGCTTCAAACATCATTTAGGGGAGCCATTTGCTTCAGATCGCCTTTTTTCGTTCTAGTTGTCGTCGTGGAAAAGAATGAAAGAAGATCATAGATTTAATTAAATATTAGTGAAGAATCGTAATTCTCGTCTTCGTTCTCTTTTTTTTTTCCCTTTGCAGAGTAAGGGAAAATGAATTACGAAAGAAGCAGATTCAGTACTGTGCTCAAGTTTGAACTAATAGATTCAACGTTTATACTCAAGTTGAAATTCACATCTTTTGTACGATACTGATGTTCATTTTGAATATCACTGGATCCTTTCCAAATTTTATTGAGATGTTTATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737743" ref_strand="+" ref_description="SGN-E737743 [LC11AC11]">
      <seq>tcggcacgaggatgaggttgcttcaaatggtgctggagatagtcagtcacaatggctgatagacacacttgaaaacagtgaaagcaaatggtgcattgctgttggatttcatccattggtagtttgcgaagaagatgctcctcaaacaaaactaaaacacaaattccagtctttacatggcctatttctgaagtatggtgtggatgcatatatcagtgcccctgtttgtgctgacaatgttgaggaaagacatattgcaaaatccaaaactagtattggcagatataaaggacctttgctgactaaagtgaatcagaacttgccttgctctatgggaagagtagatggattcctacttcacaaagccagtgctttagagattgtttcctatttagtcaccttggaaggtgatgttgtgcagaaattttttctccatcaaagaggcaaagatgttatgtagatattcctaaagcttcaaacatcatttaggggagccatttgcttcagatcgccttttttcgttctagttgtcgtcgtggaaaagaatgaaagaagatcatagatttaattaaatattagtgaagaatcgtaattctcgtcttcgttctcttttttttttccctttgcagagtaagggaaaatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="48478" stop="50444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48780" g_stop="48853" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="90" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48854" i_stop="48940" i_length="87">
            <donor d_prob="0.409" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48941" g_stop="49052" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="202" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49053" i_stop="49406" i_length="354">
            <donor d_prob="0.682" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49407" g_stop="49537" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="333" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49538" i_stop="49744" i_length="207">
            <donor d_prob="0.134" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49745" g_stop="49793" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="382" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49794" i_stop="49880" i_length="87">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49881" g_stop="50144" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="646" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E737743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48780" e_stop="48853"/>
          <exon e_start="48941" e_stop="49052"/>
          <exon e_start="49407" e_stop="49537"/>
          <exon e_start="49745" e_stop="49793"/>
          <exon e_start="49881" e_stop="50144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTTCAAATGGTGCTGGAGATAGTCAGTCACAATGGCTGATAGACACACTTGAAAACAGTGAAAGCAAATGGTACCTTCAGATTGCAATCTTTTACTCCAGAGAGAAAATATGTGACAGAAGTGATATCGTCTGACTAAAGTGATAGTGTAAATGCAGGTGCATTGCTGTTGGATTTCATCCATTGGTAGTTTGCGAAGAAGATGCTCCTCAAACAAAACTAAAACACAAATTCCAGTCTTTACATGGCCTATTTCTGAAGTATGGTGTGGTAAAGTCAAAATCTTAAACCTACATCTCCATTTCTTCAGTAATACCTTAACACCAGATACCATTTTTTCTGCAAAACCAGCTTTCTATATCTTAAATTTGATGACTTATAGCCCCCAAGGCTTTGGCGTAGTGGTAGAGCGCGGCACGTGATGTGTGGGTTGGGCGCACATCATTGGTTCGAATGTTGTTGTAGACTAAAAACTTGATACATAAGTGGAAAAGGATAGACGGATAGGACCATTATCCACCAAGTTTCAAACCGTGTGCTGTTAATCCTAGAGAATTTTCTCGAATCTGAAAACGAAGATTTTTTACTGACATATGTTGTTTTTGTTTTGCTTTTCCTGTTTAGGATGCATATATCAGTGCCCCTGTTTGTGCTGACAATGTTGAGGAAAGACATATTGCAAAATCCAAAACTAGTATTGGCAGATATAAAGGACCTTTGCTGACTAAAGTGAATCAGAACTTGCCTTGCTCTATGTAAGTAGTTTTACTTGAACATCAGTAGACTTTTGAGATTACATTGATCGGAACCTTCAAAAATGCTGCCCCACCCATGTTGGATCCTCCAAAAACGTATTACTGTCAGAGGATCCAACACATATCCAACAACATTTTTGAAGGATCCGAACAATATAGGACTCATCAAGCAAACACTTTACGACTATCATTTTTCATTTTTTTTAGGGGAAGAGTAGATGGATTCCTACTTCACAAAGCCAGTGCTTTAGAGATTGTGAGTGTTATTAAATTTTGCCTAATATTATACACAAGCCTCTTATATTATGTTCTTGATATTTTTAACAATTATTATTTCTAACAGGTTTCCTATTTAGTCACCTTGGAAGGTGATGTTGTGCAGAAATTTTTTCTCCATCAAAGAGGCAAAGATGTTATGTAGATATTCCTAAAGCTTCAAACATCATTTAGGGGAGCCATTTGCTTCAGATCGCCTTTTTTCGTTCTAGTTGTCGTCGTGGAAAAGAATGAAAGAAGATCATAGATTTAATTAAATATTAGTGAAGAATCGTAATTCTCGTCTTCGTTCTCTTTTTTTTTTCCCTTTGCAGAGTAAGGGAAAATGAAT</genome_strand>
        <mrna_strand>GTTGCTTCAAATGGTGCTGGAGATAGTCAGTCACAATGGCTGATAGACACACTTGAAAACAGTGAAAGCAAATG.......................................................................................GTGCATTGCTGTTGGATTTCATCCATTGGTAGTTTGCGAAGAAGATGCTCCTCAAACAAAACTAAAACACAAATTCCAGTCTTTACATGGCCTATTTCTGAAGTATGGTGTG..................................................................................................................................................................................................................................................................................................................................................................GATGCATATATCAGTGCCCCTGTTTGTGCTGACAATGTTGAGGAAAGACATATTGCAAAATCCAAAACTAGTATTGGCAGATATAAAGGACCTTTGCTGACTAAAGTGAATCAGAACTTGCCTTGCTCTAT...............................................................................................................................................................................................................GGGAAGAGTAGATGGATTCCTACTTCACAAAGCCAGTGCTTTAGAGATT.......................................................................................GTTTCCTATTTAGTCACCTTGGAAGGTGATGTTGTGCAGAAATTTTTTCTCCATCAAAGAGGCAAAGATGTTATGTAGATATTCCTAAAGCTTCAAACATCATTTAGGGGAGCCATTTGCTTCAGATCGCCTTTTTTCGTTCTAGTTGTCGTCGTGGAAAAGAATGAAAGAAGATCATAGATTTAATTAAATATTAGTGAAGAATCGTAATTCTCGTCTTCGTTCTCTTTTTTTTTTCCCTTTGCAGAGTAAGGGAAAATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358519" ref_strand="+" ref_description="SGN-E358519 [cLHT-22-G5]">
      <seq>aaagtttcttgaaaaattttatgaactcactttgaaagtttcaggttcacggtatgttacttgtaatgttcattttgaagatatatgtgaacttgatgcttatttgaaattatgtgtagcaagtgatgaccttgatttgagtaaaatggcttcgggaatgaaagaaaaattcaagaaatattgggggactcctgaaaaaatgaacaaaatgatttttattgcttctgttttggatcctcgcaataaatttgtctatgttagttttgctcttgaagaattacttggggaagaaacgggaaatgtagtgaatacgaaagtagaggcttacttgaaggatttgtttgcgatatatgtaagtaagtatggaaaaggttccaaaagtcaaccatcttcatctgactcatctgattcttctggtagtggtatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="54071" stop="53043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53771" g_stop="53343" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E358519" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53771" e_stop="53343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTAAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACCTTGATTTGAGTAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAGGGATTTGTTTACGATATATGTAAGTAAGTATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCTGACTCATCTGATTCTTCTGGTAGTGGCATTTC</genome_strand>
        <mrna_strand>AAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACCTTGATTTGAGTAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAAGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCTGACTCATCTGATTCTTCTGGTAGTGGTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550684" ref_strand="+" ref_description="SGN-E550684 [TUS-50-B11]">
      <seq>agaatgtgataagatgttgtctttagatgtgcctactaggtggaattccacctatttgatgttagacacagcagaaaagtttgagaaggcttttgagaggtttgatctttatgatggtaattttcattcttttcttgctactgatgtttgtgaagatggaagtatcgcagggtcaattcaatatgaagattgggctaatgtgaggaatgtcacaaagtttcttgaaaaattttatgaactcactttgaaagtttcaggttcacggtatgttacttgtaatgttcattttgaagatatatgtgaacttgatgcttatttgaaattatgtgtagcaagtgatgacgttgatttgagtaaaatggctttgggaatgaaagaaaaattcaagaaatattgggggactcctgaaaaaatgaacaaaatgatttttattgcttctgttttggatcctcgcaataaatttgtctatgttagttttgctcttgaagaattacttggggaagaaacgggaaatgtagtgaatacgaaagcagaggcttacttgagggatttgtttgcgatatatgtaagtaagtatggaaaaggttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="54284" stop="53095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53984" g_stop="53395" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E550684" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53984" e_stop="53395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAACTCCACCTATTTGATGTTAGACACAGCGGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTAAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACCTTGATTTGAGTAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAGGGATTTGTTTACGATATATGTAAGTAAGTATGGAAAAGGTTCCA</genome_strand>
        <mrna_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTCATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACGTTGATTTGAGTAAAATGGCTTTGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGCAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688349" ref_strand="+" ref_description="SGN-E688349 [t3_tus_50_b11]">
      <seq>agaatgtgataagatgttgtctttagatgtgcctactaggtggaattccacctatttgatgttagacacagcagaaaagtttgagaaggcttttgagaggtttgatctttatgatggtaattttcattcttttcttgctactgatgtttgtgaagatggaagtatcgcagggtcaattcaatatgaagattgggctaatgtgaggaatgtcacaaagtttcttgaaaaattttatgaactcactttgaaagtttcaggttcacggtatgttacttgtaatgttcattttgaagatatatgtgaacttgatgcttatttgaaattatgtgtagcaagtgatgacgttgatttgagtaaaatggctttgggaatgaaagaaaaattcaagaaatattgggggactcctgaaaaaatgaacaaaatgatttttattgcttctgttttggatcctcgcaataaatttgtctatgttagttttgctcttgaagaattacttggggaagaaacgggaaatgtagtgaatacgaaagcagaggcttacttgagggatttgtttgcgatatatgtaagtaagtatggaaaaggttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="54284" stop="53095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53984" g_stop="53395" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E688349" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53984" e_stop="53395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAACTCCACCTATTTGATGTTAGACACAGCGGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTAAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACCTTGATTTGAGTAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAGGGATTTGTTTACGATATATGTAAGTAAGTATGGAAAAGGTTCCA</genome_strand>
        <mrna_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTCATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACGTTGATTTGAGTAAAATGGCTTTGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGCAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220775" ref_strand="+" ref_description="SGN-E220775 [cLEL-22-H10](-)">
      <seq>atgtgtatgtgtaagagtgagtctcttttttcagataaagcagcagcaaaagcattgaaaagggacagttagtgaacttacagggtctctgtttaaattgtctcttataaatcagagtattctaggggaattagtagcttagtaggatggttggcttatgaatacctggactttcaccttgttggtgagggttcaattctccaccttgtaatcccctccccctttccgcttcggcccagttttttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="69532" stop="70398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69832" g_stop="70096" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E220775" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69832" e_stop="70096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGTATGTGTGAGAGTGTGTCTCTTTTTTCAGATAAAGCAGCAGCAAAAGCATTGAAAAGGGACAGTTAGTGGACTTACAGGGTCTCTGTTTAAATTGTCTCTTATAAATCAGAGTATTCTAGGGGAATTAGTAGCTTAGTAGGATGGTTGGCTTATGAATACCTGGACTTTCACCTTGTTGGTGAGGGTTCAATTCTCCACCTTGTAATCCCCTCCCCCTTTCCGCTTCGGCCCAGTTTTTTCAAAAAAAATAAAATAAAAT</genome_strand>
        <mrna_strand>ATGTGTATGTGTAAGAGTGAGTCTCTTTTTTCAGATAAAGCAGCAGCAAAAGCATTGAAAAGGGACAGTTAGTGAACTTACAGGGTCTCTGTTTAAATTGTCTCTTATAAATCAGAGTATTCTAGGGGAATTAGTAGCTTAGTAGGATGGTTGGCTTATGAATACCTGGACTTTCACCTTGTTGGTGAGGGTTCAATTCTCCACCTTGTAATCCCCTCCCCCTTTCCGCTTCGGCCCAGTTTTTTCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220859" ref_strand="+" ref_description="SGN-E220859 [cLEL-22-H20](-)">
      <seq>tttttcagataaagcagcagcaaaaacattgaaaagggacagttagtggacatacagggtctctgtttaaattgtctcttataaatcagagtattctagaggaattagtagcttagtaggatggttggcttatgaatacctggactttcaccttgttggtgagggttcaattctccaccttgtaatcccctccccctttccgcttcggcccagttttttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="69558" stop="70398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69858" g_stop="70096" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E220859" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69858" e_stop="70096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCAGATAAAGCAGCAGCAAAAGCATTGAAAAGGGACAGTTAGTGGACTTACAGGGTCTCTGTTTAAATTGTCTCTTATAAATCAGAGTATTCTAGGGGAATTAGTAGCTTAGTAGGATGGTTGGCTTATGAATACCTGGACTTTCACCTTGTTGGTGAGGGTTCAATTCTCCACCTTGTAATCCCCTCCCCCTTTCCGCTTCGGCCCAGTTTTTTCAAAAAAAATAAAATAAAAT</genome_strand>
        <mrna_strand>TTTTTCAGATAAAGCAGCAGCAAAAACATTGAAAAGGGACAGTTAGTGGACATACAGGGTCTCTGTTTAAATTGTCTCTTATAAATCAGAGTATTCTAGAGGAATTAGTAGCTTAGTAGGATGGTTGGCTTATGAATACCTGGACTTTCACCTTGTTGGTGAGGGTTCAATTCTCCACCTTGTAATCCCCTCCCCCTTTCCGCTTCGGCCCAGTTTTTTCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369946" ref_strand="+" ref_description="SGN-E369946 [TUS-26-F13]">
      <seq>taattcaccctagtttactgcattgagaaaacctgaaccgtatcttggcagggcgactaggtatggcatcatttgcaaactggtgtctgcagccatggcgttgtccttttctctttgcatgttcatgcacaacaaaatataagtcctaaagtctgtggttaatatctcaaaaggtcactcaactgatggggattggcatggcagctttaaggctccgtgagatatgggaactatcttactggactattaatgcttgcagccatgcgcccatgtccattgtttagctttttgaatgacaaaaggcaaatctgagcctccaagtatatctctgtgttcagtaaatgaggcattttattgaactcgagaaaggtagtgattttctgagggtggttattctcttttctcttaagttcaatttagccaatgaagtttcctatgcttttgttagacagatatagtttaacagccctctcatcagcaaaatgttcttgatgatgacgatgattgccatggttatgataataataatattaataataagcaaaattacgtttcccccctcaacttttctagaaaaacccaaatcctcaaccctaaactttgtgatgaggctgtgatgatattctccaggaagtttgaaaatcagatttttaagctgattcatatcttggctaggcaaaggcaggggatttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76812" stop="78107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77112" g_stop="77807" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E369946" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77112" e_stop="77807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCACCCTAGTTTACTGCATTGAGAAAACCTGAACCGTATCTTGGCAGGGCGACTAGGTATGGCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAGCTTTAAGGCTCCGTGAGATATGGGAACTATCTTACTGGACTATTAATGCTTGCAGCCATGCGCCCATGTCCATTGTTTAGCTTTTTGAATGACAAAAGGCAAATCTGAGCCTCCAAGTATATCTCTGTGTTCAGTAAATGAGGCATTTTATTGAACTCGAGAAAGGTAGTGATTTTCTGAGGGTGGTTATTCTCTTTTCTCTTAAGTTCAATTTAGCCAATGAAGTTTCCTATGCTTTTGTTAGACAGATATAGTTTAACAGCCCTCTCATCAGCAAAATGTTCTTGATGATGACGATGATTGCCATGGTTATGATAATAATAATATTAATAATAAGCAAAATTACGTTTCCCCCCTCAACTTTTCTAGAAAAACCCAAATCCTCAACCCTAAACTTTGTGATGAGGCTGTGATGATATTCTCCAGGAAGTTTGAAAATCAGATTTTTAAGCTGATTCATATCTTGGCTAGGCAAAGGCAGGGGAATTCATG</genome_strand>
        <mrna_strand>TAATTCACCCTAGTTTACTGCATTGAGAAAACCTGAACCGTATCTTGGCAGGGCGACTAGGTATGGCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAGCTTTAAGGCTCCGTGAGATATGGGAACTATCTTACTGGACTATTAATGCTTGCAGCCATGCGCCCATGTCCATTGTTTAGCTTTTTGAATGACAAAAGGCAAATCTGAGCCTCCAAGTATATCTCTGTGTTCAGTAAATGAGGCATTTTATTGAACTCGAGAAAGGTAGTGATTTTCTGAGGGTGGTTATTCTCTTTTCTCTTAAGTTCAATTTAGCCAATGAAGTTTCCTATGCTTTTGTTAGACAGATATAGTTTAACAGCCCTCTCATCAGCAAAATGTTCTTGATGATGACGATGATTGCCATGGTTATGATAATAATAATATTAATAATAAGCAAAATTACGTTTCCCCCCTCAACTTTTCTAGAAAAACCCAAATCCTCAACCCTAAACTTTGTGATGAGGCTGTGATGATATTCTCCAGGAAGTTTGAAAATCAGATTTTTAAGCTGATTCATATCTTGGCTAGGCAAAGGCAGGGGATTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264546" ref_strand="+" ref_description="SGN-E264546 [cLEG-67-F13]">
      <seq>taattcaccctagtttactgcattgagaaaacctgaaccgtatcttggcagggcgactaggtatggcatcatttgcaaactggtgtctgcagccatggcgttgtccttttctctttgcatgttcatgcacaacaaaatataagtcctaaagtctgtggttaatatctcaaaaggtcactcaactgatggggattggcatggcagctttaaggctccgtgagatatgggaactatcttactggactattaatgcttgcagccatgcgcccatgtccattgtttagctttttgaatgacaaaaggcaaatctgagcctccaagtatatctctgtgttcagtaaatgaggcattttattgaactcgagaaaggtagtgattttctgagggtggttattctcttttctcttaagttcaatttagccaatgaagtttcctatgcttttgttagacagatatagtttaacagccctctcatcagcaaaatgttcttgatgatgacgatgattgccatggttatgataataataatattaataataagcaaaattacgtttcccccctcaacttttctagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76812" stop="77989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77112" g_stop="77689" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E264546" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77112" e_stop="77689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCACCCTAGTTTACTGCATTGAGAAAACCTGAACCGTATCTTGGCAGGGCGACTAGGTATGGCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAGCTTTAAGGCTCCGTGAGATATGGGAACTATCTTACTGGACTATTAATGCTTGCAGCCATGCGCCCATGTCCATTGTTTAGCTTTTTGAATGACAAAAGGCAAATCTGAGCCTCCAAGTATATCTCTGTGTTCAGTAAATGAGGCATTTTATTGAACTCGAGAAAGGTAGTGATTTTCTGAGGGTGGTTATTCTCTTTTCTCTTAAGTTCAATTTAGCCAATGAAGTTTCCTATGCTTTTGTTAGACAGATATAGTTTAACAGCCCTCTCATCAGCAAAATGTTCTTGATGATGACGATGATTGCCATGGTTATGATAATAATAATATTAATAATAAGCAAAATTACGTTTCCCCCCTCAACTTTTCTAGAAAAA</genome_strand>
        <mrna_strand>TAATTCACCCTAGTTTACTGCATTGAGAAAACCTGAACCGTATCTTGGCAGGGCGACTAGGTATGGCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAGCTTTAAGGCTCCGTGAGATATGGGAACTATCTTACTGGACTATTAATGCTTGCAGCCATGCGCCCATGTCCATTGTTTAGCTTTTTGAATGACAAAAGGCAAATCTGAGCCTCCAAGTATATCTCTGTGTTCAGTAAATGAGGCATTTTATTGAACTCGAGAAAGGTAGTGATTTTCTGAGGGTGGTTATTCTCTTTTCTCTTAAGTTCAATTTAGCCAATGAAGTTTCCTATGCTTTTGTTAGACAGATATAGTTTAACAGCCCTCTCATCAGCAAAATGTTCTTGATGATGACGATGATTGCCATGGTTATGATAATAATAATATTAATAATAAGCAAAATTACGTTTCCCCCCTCAACTTTTCTAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255168" ref_strand="+" ref_description="SGN-E255168 [cLEG-31-A20]">
      <seq>taattcaccctagtttactgcattgagaaaacctgaaccgtatcttggcagggcgactaggtatggcatcatttgcaaactggtgtctgcagccatggcgttgtccttttctctttgcatgttcatgcacaacaaaatataagtcctaaagtctgtggttaatatctcaaaaggtcactcaactgatggggattggcatggcagctttaaggctccgtgagatatgggaactatcttactggactattaatgcttgcagccatgcgcccatgtccattgtttagctttttgaatgacaaaaggcaaatctgagcctccaagtatatctctgtgttcagtaaatgaggcattttattgaactcgagaaaggtagtgattttctgagggtggttattctcttttctcttaagttcaatttagccaatgaagtttcctatgcttttgttagacagatatagtttaacagccctctcatcagcaaaatgttcttgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76812" stop="77908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77112" g_stop="77608" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E255168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77112" e_stop="77608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCACCCTAGTTTACTGCATTGAGAAAACCTGAACCGTATCTTGGCAGGGCGACTAGGTATGGCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAGCTTTAAGGCTCCGTGAGATATGGGAACTATCTTACTGGACTATTAATGCTTGCAGCCATGCGCCCATGTCCATTGTTTAGCTTTTTGAATGACAAAAGGCAAATCTGAGCCTCCAAGTATATCTCTGTGTTCAGTAAATGAGGCATTTTATTGAACTCGAGAAAGGTAGTGATTTTCTGAGGGTGGTTATTCTCTTTTCTCTTAAGTTCAATTTAGCCAATGAAGTTTCCTATGCTTTTGTTAGACAGATATAGTTTAACAGCCCTCTCATCAGCAAAATGTTCTTGATGATG</genome_strand>
        <mrna_strand>TAATTCACCCTAGTTTACTGCATTGAGAAAACCTGAACCGTATCTTGGCAGGGCGACTAGGTATGGCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAGCTTTAAGGCTCCGTGAGATATGGGAACTATCTTACTGGACTATTAATGCTTGCAGCCATGCGCCCATGTCCATTGTTTAGCTTTTTGAATGACAAAAGGCAAATCTGAGCCTCCAAGTATATCTCTGTGTTCAGTAAATGAGGCATTTTATTGAACTCGAGAAAGGTAGTGATTTTCTGAGGGTGGTTATTCTCTTTTCTCTTAAGTTCAATTTAGCCAATGAAGTTTCCTATGCTTTTGTTAGACAGATATAGTTTAACAGCCCTCTCATCAGCAAAATGTTCTTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256347" ref_strand="+" ref_description="SGN-E256347 [cLEG-37-P15]">
      <seq>taattcacccttttttactgcattgagaaaacctgaaccggatcttggcagggccactagggatggcatcatttgcaaactggtgtctgcagccatggcgttgtccttttctctttgcatgttcatgcacaacaaaatataagtcctaaagcctgtggttaatatctcaaaaggtcactcaactgatggggattggcatggcagctttaaggctccgtgagatatgggaactatcttactggactattaatgcttgcagccatgcgcccatgtccattgtttagctttttgaatgacaaaaggcaaatctgagcctccaagtatatctctgtgttcagtaaatgaggcattgtattgaactcgataaaggtagtgattttctgagggtggatattctcttttctcttaagttcaatgcatccaatgaagggtcctatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76812" stop="77851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77112" g_stop="77551" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E256347" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77112" e_stop="77551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCACCCTAGTTTACTGCATTGAGAAAACCTGAACCGTATCTTGGCAGGGCGACTAGGTATGGCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAGCTTTAAGGCTCCGTGAGATATGGGAACTATCTTACTGGACTATTAATGCTTGCAGCCATGCGCCCATGTCCATTGTTTAGCTTTTTGAATGACAAAAGGCAAATCTGAGCCTCCAAGTATATCTCTGTGTTCAGTAAATGAGGCATTTTATTGAACTCGAGAAAGGTAGTGATTTTCTGAGGGTGGTTATTCTCTTTTCTCTTAAGTTCAATTTAGCCAATGAAGTTTCCTATGCT</genome_strand>
        <mrna_strand>TAATTCACCCTTTTTTACTGCATTGAGAAAACCTGAACCGGATCTTGGCAGGGCCACTAGGGATGGCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGCCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAGCTTTAAGGCTCCGTGAGATATGGGAACTATCTTACTGGACTATTAATGCTTGCAGCCATGCGCCCATGTCCATTGTTTAGCTTTTTGAATGACAAAAGGCAAATCTGAGCCTCCAAGTATATCTCTGTGTTCAGTAAATGAGGCATTGTATTGAACTCGATAAAGGTAGTGATTTTCTGAGGGTGGATATTCTCTTTTCTCTTAAGTTCAATGCATCCAATGAAGGGTCCTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259142" ref_strand="+" ref_description="SGN-E259142 [cLEG-41-J20]">
      <seq>taattcaccctagtttactgcattgagaaaacctgaaccgtatcttggcagggcgactaggtatggcatcatttgcaaactggtgtctgcagccatggcgttgtccttttctctttgcatgttcatgcacaacaaaatataagtcctaaagtctgtggttaatatctcaaaaggtcactcaactgatggggattggcatggcagctttaaggctccgtgagatatgggaactatcttactggactattaatgcttgcagccatgcgcccatgtccattgtttagctttttgaatgacaaaaggcaaatctgagcctccaagtatatctctgtgttcagtaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76812" stop="77755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77112" g_stop="77455" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E259142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77112" e_stop="77455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCACCCTAGTTTACTGCATTGAGAAAACCTGAACCGTATCTTGGCAGGGCGACTAGGTATGGCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAGCTTTAAGGCTCCGTGAGATATGGGAACTATCTTACTGGACTATTAATGCTTGCAGCCATGCGCCCATGTCCATTGTTTAGCTTTTTGAATGACAAAAGGCAAATCTGAGCCTCCAAGTATATCTCTGTGTTCAGTAAATG</genome_strand>
        <mrna_strand>TAATTCACCCTAGTTTACTGCATTGAGAAAACCTGAACCGTATCTTGGCAGGGCGACTAGGTATGGCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAGCTTTAAGGCTCCGTGAGATATGGGAACTATCTTACTGGACTATTAATGCTTGCAGCCATGCGCCCATGTCCATTGTTTAGCTTTTTGAATGACAAAAGGCAAATCTGAGCCTCCAAGTATATCTCTGTGTTCAGTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375656" ref_strand="+" ref_description="SGN-E375656 [TUS-35-K23]">
      <seq>taattcaccctagtttactgcattgagaaaacctgaaccgtatcttggcagggcgactaggtatggcatcatttgcaaactggtgtctgcagccatggcgttgtccttttctctttgcatgttcatgcacaacaaaatataagtcctaaagtctgtggttaatatctcataaggtcactcaactgatggggattggcatggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76812" stop="77615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77112" g_stop="77315" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E375656" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>204</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77112" e_stop="77315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCACCCTAGTTTACTGCATTGAGAAAACCTGAACCGTATCTTGGCAGGGCGACTAGGTATGGCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAG</genome_strand>
        <mrna_strand>TAATTCACCCTAGTTTACTGCATTGAGAAAACCTGAACCGTATCTTGGCAGGGCGACTAGGTATGGCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCATAAGGTCACTCAACTGATGGGGATTGGCATGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256213" ref_strand="+" ref_description="SGN-E256213 [cLEG-37-O2]">
      <seq>actgcattgagaaaacctgaaccgtatcttggcagggcgactaggtatggcatcatttgcaaactggtgtctgcagccatggcgttgtccttttctctttgcatgttcatgcacaacaaaatataagtcctaaagtctgtggttaatatctcaaaaggtcactcaactgatggggattggcatggcagctttaaggctccgtgagatatgggaactatcttactggactattaatgcttgcagccatgcgcccatgtccattgtttagctttttgaatgacaaaaggcaaatctgagcctccaagtatatctctgtgttcagtaaatgaggcattttattgaactcgagaaaggtagtgattttctgagggtggttattctcttttctcttaagttcaatttagccaatgaagtttcctatgcttttgttagacagatatagtttaacagccctctcatcagcaaaatgttcttgatgatgacgatgattgccatggttatgataataataatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76828" stop="77943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77128" g_stop="77643" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E256213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77128" e_stop="77643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCATTGAGAAAACCTGAACCGTATCTTGGCAGGGCGACTAGGTATGGCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAGCTTTAAGGCTCCGTGAGATATGGGAACTATCTTACTGGACTATTAATGCTTGCAGCCATGCGCCCATGTCCATTGTTTAGCTTTTTGAATGACAAAAGGCAAATCTGAGCCTCCAAGTATATCTCTGTGTTCAGTAAATGAGGCATTTTATTGAACTCGAGAAAGGTAGTGATTTTCTGAGGGTGGTTATTCTCTTTTCTCTTAAGTTCAATTTAGCCAATGAAGTTTCCTATGCTTTTGTTAGACAGATATAGTTTAACAGCCCTCTCATCAGCAAAATGTTCTTGATGATGACGATGATTGCCATGGTTATGATAATAATAATATT</genome_strand>
        <mrna_strand>ACTGCATTGAGAAAACCTGAACCGTATCTTGGCAGGGCGACTAGGTATGGCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAGCTTTAAGGCTCCGTGAGATATGGGAACTATCTTACTGGACTATTAATGCTTGCAGCCATGCGCCCATGTCCATTGTTTAGCTTTTTGAATGACAAAAGGCAAATCTGAGCCTCCAAGTATATCTCTGTGTTCAGTAAATGAGGCATTTTATTGAACTCGAGAAAGGTAGTGATTTTCTGAGGGTGGTTATTCTCTTTTCTCTTAAGTTCAATTTAGCCAATGAAGTTTCCTATGCTTTTGTTAGACAGATATAGTTTAACAGCCCTCTCATCAGCAAAATGTTCTTGATGATGACGATGATTGCCATGGTTATGATAATAATAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257104" ref_strand="+" ref_description="SGN-E257104 [cLEG-44-H14]">
      <seq>gcatcatttgcaaactggtgtctgcagccatggcgaaggccttttctctttgcatgttcatgcacaacaaaatataagtcctaaagtctgtggttaatatctcaaaaggtcactcaactgatggggattggcatggcagctttaaggctccgtgagatatgggaactatcttactggactattaatgcttgcacccatgcgcccatgtccattggttagctttttgaatgacaaaaggcaaatctgagcctccaagtatatctctgtgttcagtaaatgaggcattttattgaactcgagaaaagtagtgattttctgagggtggttattctcttttctcttaagttcaatttagccaatgaagtttcctatgcttttgttagacagatatagtttaacagccctctcatcagcaaaatgttcttgatgatgacgatgattgccatggttatgataataataatattaataataagcaaaattacgtttcccccctcaacttttctagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76877" stop="77989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77177" g_stop="77689" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E257104" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77177" e_stop="77689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAGCTTTAAGGCTCCGTGAGATATGGGAACTATCTTACTGGACTATTAATGCTTGCAGCCATGCGCCCATGTCCATTGTTTAGCTTTTTGAATGACAAAAGGCAAATCTGAGCCTCCAAGTATATCTCTGTGTTCAGTAAATGAGGCATTTTATTGAACTCGAGAAAGGTAGTGATTTTCTGAGGGTGGTTATTCTCTTTTCTCTTAAGTTCAATTTAGCCAATGAAGTTTCCTATGCTTTTGTTAGACAGATATAGTTTAACAGCCCTCTCATCAGCAAAATGTTCTTGATGATGACGATGATTGCCATGGTTATGATAATAATAATATTAATAATAAGCAAAATTACGTTTCCCCCCTCAACTTTTCTAGAAAAA</genome_strand>
        <mrna_strand>GCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGAAGGCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAGCTTTAAGGCTCCGTGAGATATGGGAACTATCTTACTGGACTATTAATGCTTGCACCCATGCGCCCATGTCCATTGGTTAGCTTTTTGAATGACAAAAGGCAAATCTGAGCCTCCAAGTATATCTCTGTGTTCAGTAAATGAGGCATTTTATTGAACTCGAGAAAAGTAGTGATTTTCTGAGGGTGGTTATTCTCTTTTCTCTTAAGTTCAATTTAGCCAATGAAGTTTCCTATGCTTTTGTTAGACAGATATAGTTTAACAGCCCTCTCATCAGCAAAATGTTCTTGATGATGACGATGATTGCCATGGTTATGATAATAATAATATTAATAATAAGCAAAATTACGTTTCCCCCCTCAACTTTTCTAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334381" ref_strand="+" ref_description="SGN-E334381 [cTOD-21-B12]">
      <seq>agatatagtttaacagccctctcatcagcaaaatgttcttgatgatgacgatgattgccatggttatgataataataatattaataataagcaaaattacgtttcccccctcaacttttctagaaaaacccaaatcctcaaccctaaactttgtgatgaggctgtgatgatattctccaggaagtttgaaaatcagatttttaagctgattcatatcttggctaggcaaaggcaggggaattcatgaggctggttcttacgtgctctgtcacacgtatctgctttttgcagccatggtgaagtagccctttttttctgattgattttcactcaaaatctgagcctcttttctgtttaaagttttggttctacaatatgtagtctttttttttcatccttcgtactatcagcacatataggaagagtcccctttgagaaatgaaacttcctatgtatccctctatacaatttccatagattgttaggtacactgagatgaaataagtccaaagggaatggaagtggatatttaggatccatataatgtctttaaacagtttgatattgaagctggtttttgctgcatttatctacactactcaaactttcatgcctttttagatcctgaatgcaccaagttttccaaggcaatgaagatgtcatattgaaaatgaaaatgtgaataagatgagagttgattcatggcctggcttggccaaagtcaattggaaggtcttgtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="77262" stop="78603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77562" g_stop="78303" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E334381" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77562" e_stop="78303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATATAGTTTAACAGCCCTCTCATCAGCAAAATGTTCTTGATGATGACGATGATTGCCATGGTTATGATAATAATAATATTAATAATAAGCAAAATTACGTTTCCCCCCTCAACTTTTCTAGAAAAACCCAAATCCTCAACCCTAAACTTTGTGATGAGGCTGTGATGATATTCTCCAGGAAGTTTGAAAATCAGATTTTTAAGCTGATTCATATCTTGGCTAGGCAAAGGCAGGGGAATTCATGAGGCTGGTTCTTACGTGCTCTGTCACACGTATCTGCTTTTTGCAGCCATGGTGAAGTAGCCCTTTTTTTCTGATTGATTTTCACTCAAAATCTGAGCCTCTTTTCTGTTTAAAGTTTTGGTTCTACAATATGTAGTCTTTTTTTTTCATCCTTCGTACTATCAGCACATATAGGAAGAGTCCCCTTTGAGAAATGAAACTTCCTATGTATCCCTCTATACAATTTCCATAGATTGTTAGGTACACTGAGATGAAATAAGTCCAAAGGGAATGGAAGTGGATATTTAGGATCCATATAATGTCTTTAAACAGTTTGATATTGAAGCTGGTTTTTGCTGCATTTATCTACACTACTCAAACTTTCATGCCTTTTTAGATCCTGAATGCACCAAGTTTTCCAAGGCAATGAAGATGTCATATTGAAAATGAAAATGTGAATAAGATGAGAGTTGATTCATGGCCTGGCTTGGCCAAGTCCAATTGGAAGGTCTTGTAAG</genome_strand>
        <mrna_strand>AGATATAGTTTAACAGCCCTCTCATCAGCAAAATGTTCTTGATGATGACGATGATTGCCATGGTTATGATAATAATAATATTAATAATAAGCAAAATTACGTTTCCCCCCTCAACTTTTCTAGAAAAACCCAAATCCTCAACCCTAAACTTTGTGATGAGGCTGTGATGATATTCTCCAGGAAGTTTGAAAATCAGATTTTTAAGCTGATTCATATCTTGGCTAGGCAAAGGCAGGGGAATTCATGAGGCTGGTTCTTACGTGCTCTGTCACACGTATCTGCTTTTTGCAGCCATGGTGAAGTAGCCCTTTTTTTCTGATTGATTTTCACTCAAAATCTGAGCCTCTTTTCTGTTTAAAGTTTTGGTTCTACAATATGTAGTCTTTTTTTTTCATCCTTCGTACTATCAGCACATATAGGAAGAGTCCCCTTTGAGAAATGAAACTTCCTATGTATCCCTCTATACAATTTCCATAGATTGTTAGGTACACTGAGATGAAATAAGTCCAAAGGGAATGGAAGTGGATATTTAGGATCCATATAATGTCTTTAAACAGTTTGATATTGAAGCTGGTTTTTGCTGCATTTATCTACACTACTCAAACTTTCATGCCTTTTTAGATCCTGAATGCACCAAGTTTTCCAAGGCAATGAAGATGTCATATTGAAAATGAAAATGTGAATAAGATGAGAGTTGATTCATGGCCTGGCTTGGCCAAAGTCAATTGGAAGGTCTTGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375655" ref_strand="+" ref_description="SGN-E375655 [TUS-35-K23](-)">
      <seq>aggtgaatccgtacctaaacataagtatgtcagctaacagtccgttctacagttcttgtcgcgtctggcattcttttcaggtgaacaatgttgcatttcatctttgctgggtggcggaccggtgtcatttcaattgttggtggtactgatggtaaagattgctggctttggttgaatgaaaattggatccgccctcatgaaaagtacaaggaaaaaccagcttatattgaacctgaggatgaagtgtagacgccagtcggtgacagaagagaatgtagcttcaagaatgaggcaagcccacccacccctcgtgttgtcgctgagcattgccaggggccacaacgcctgtgtatcacattgcctcagcttccctactttgcatgagacctcaatgatgcaattctctggttctggctactgaagttctgagataatgctttgttctttaaaatgttagcatttgctatcaaatgcaccatgtttgtatttttcttacccaagaatgtttattaatatggacaatatttctgttgacaaattttgtgctttctttgacaccaaagttttcatttttatcctcttgtaattgcagcatcaaatttggaatattgtactatttgcatttgatagtatgttatatatactctatagtttcaatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="78248" stop="79753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78548" g_stop="78751" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78752" i_stop="78996" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78997" g_stop="79462" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="670" r_length="466" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E375655" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78548" e_stop="78751"/>
          <exon e_start="78997" e_stop="79462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGAATCCGTACCTAAACATGAGTATGTCAGCTAACAGTCCGTTCTACAGTTCTTGTCGCGTCTGGCATTCTTTTCAGGTGAACAATGTTGCATTTCATCTTTGCTGGGTGGCGGACCGGTGTCATTTCAATTGTTGGTGGTACTGATGGTAAAGATTGCTGGCTTTGGTTGAATGAAAATTGGATCCGCCCTCATGAAAAGGTGAAAAAAATGTACCTTCAATTTGCTTGTGTTTATTTAAGATCATTTTGGCCATTACTTTGAACTACACCTCGGAATATCATCAAACTTGACATGAATTATATCCCATACTACTTTATAACTAATACGCCTATCTTGCGCTTAAATCTTGATTTTACATCTTCTATAATTGAACTGCTATCCCAAAGCATGTTACTAAGTAAATTTATGCATTACTCTTAACTGCCAATGGATGGATACACTAGTACAAGGAAAAACCAGCTTATATTGAACCTGAGGATGAAGTGTAGACGCCAGTCGGTGACAGAAGAGAATGTAGCTTCAAGAATGAGGCAAGCCCACCCACCCCTCGTGTTGTCGCTGAGCATTGCCAGGGGCCACAACGCCTGTGTATCACATTGCCTCAGCTTCCCTACTTTGCATGAGACCTCAATGATGCAATTCTCTGGTTCTGGCTACTGAAGTTCTGAGATAATGCTTTGTTCTTTAAAATGTTAGCATTTGCTATCAAATGCACCATGTTTGTATTTTTCTTACCCAAGAATGTTTATTAATATGGACAATATTTCTGTTGACAAATTTTGTGCTTTCTTTGACACCAAAGTTTTCATTTTTATCCTCTTGTAATTGCAGCATCAAATTTGGAATATTGTACTATTTGCATTTGATAGTATGTTATATATACTCTATCGTTTCAATTTATTTATCAGA</genome_strand>
        <mrna_strand>AGGTGAATCCGTACCTAAACATAAGTATGTCAGCTAACAGTCCGTTCTACAGTTCTTGTCGCGTCTGGCATTCTTTTCAGGTGAACAATGTTGCATTTCATCTTTGCTGGGTGGCGGACCGGTGTCATTTCAATTGTTGGTGGTACTGATGGTAAAGATTGCTGGCTTTGGTTGAATGAAAATTGGATCCGCCCTCATGAAAAG.....................................................................................................................................................................................................................................................TACAAGGAAAAACCAGCTTATATTGAACCTGAGGATGAAGTGTAGACGCCAGTCGGTGACAGAAGAGAATGTAGCTTCAAGAATGAGGCAAGCCCACCCACCCCTCGTGTTGTCGCTGAGCATTGCCAGGGGCCACAACGCCTGTGTATCACATTGCCTCAGCTTCCCTACTTTGCATGAGACCTCAATGATGCAATTCTCTGGTTCTGGCTACTGAAGTTCTGAGATAATGCTTTGTTCTTTAAAATGTTAGCATTTGCTATCAAATGCACCATGTTTGTATTTTTCTTACCCAAGAATGTTTATTAATATGGACAATATTTCTGTTGACAAATTTTGTGCTTTCTTTGACACCAAAGTTTTCATTTTTATCCTCTTGTAATTGCAGCATCAAATTTGGAATATTGTACTATTTGCATTTGATAGTATGTTATATATACTCTATAGTTTCAATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369945" ref_strand="+" ref_description="SGN-E369945 [TUS-26-F13](-)">
      <seq>aggggccacaacgcctgtgtatcacattgcctcagcttccctactttgcatgagacctcaatgatgcaattctctggttctggctactgaagttctgagataatgctttgttctttaaaatgttagcatttgctatcaaatgcaccatgtttgtatttttcttacccaagaatgtttattaatatggacaatatttctgttgacaaattttgtgctttctttgacaccaaagttttcatttttatcctcttgtaattgcagcatcaaatttggaatattgtactatttgcatttgatagtatgttatatatactctatcgtttcaatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="78824" stop="79753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79124" g_stop="79462" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E369945" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79124" e_stop="79462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGCCACAACGCCTGTGTATCACATTGCCTCAGCTTCCCTACTTTGCATGAGACCTCAATGATGCAATTCTCTGGTTCTGGCTACTGAAGTTCTGAGATAATGCTTTGTTCTTTAAAATGTTAGCATTTGCTATCAAATGCACCATGTTTGTATTTTTCTTACCCAAGAATGTTTATTAATATGGACAATATTTCTGTTGACAAATTTTGTGCTTTCTTTGACACCAAAGTTTTCATTTTTATCCTCTTGTAATTGCAGCATCAAATTTGGAATATTGTACTATTTGCATTTGATAGTATGTTATATATACTCTATCGTTTCAATTTATTTATCAGA</genome_strand>
        <mrna_strand>AGGGGCCACAACGCCTGTGTATCACATTGCCTCAGCTTCCCTACTTTGCATGAGACCTCAATGATGCAATTCTCTGGTTCTGGCTACTGAAGTTCTGAGATAATGCTTTGTTCTTTAAAATGTTAGCATTTGCTATCAAATGCACCATGTTTGTATTTTTCTTACCCAAGAATGTTTATTAATATGGACAATATTTCTGTTGACAAATTTTGTGCTTTCTTTGACACCAAAGTTTTCATTTTTATCCTCTTGTAATTGCAGCATCAAATTTGGAATATTGTACTATTTGCATTTGATAGTATGTTATATATACTCTATCGTTTCAATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718794" ref_strand="+" ref_description="SGN-E718794 [FC05DD02]">
      <seq>aatcggccgaattgattggaaattctccctatttaaagattccatttttatcaaaaaatctcccaaatcttgaaaaccccatttgtttaaacttcaaaataatggctacaaaagtaatggaagtggtgaaaaatcttgatttaaagaggtatatgggtaaatggtatgaaattgcttcatttccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcaaatggcactgtacatgtgctgaatgaaacatggtgtaatggcaaaaaagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggcgattattgggttttgtatattgatgaggattatcagaatgctttgattgggcagcctattaggaggtatttatggatattaagtaggcaaacacgtcttgacgataagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaaaacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaggaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggccaaaaaaggaaaactatccaaagaggtgttttgaaacagtatttaaagcttatgtttttacaagtgttttttactatgaaactatgtaaagttgctagtattgaaagtgtgtggtttgtatttgaatctcctgtgaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80781" stop="84396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81076" g_stop="81548" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="84096" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="819" r_length="346" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E718794" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81076" e_stop="81548"/>
          <exon e_start="83751" e_stop="84096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCTACAATCAATGGAAATTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGAATCTCCTGTGAAATGT</genome_strand>
        <mrna_strand>AATCGGCCGAATTGATTGGAAATTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAAATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAAATGGCACTGTACATGTGCTGAATGAAACATGGTGTAATGGCAAAAAAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGCGATTATTGGGTTTTGTATATTGATGAGGATTATCAGAATGCTTTGATTGGGCAGCCTATTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATAAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAAACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGAATCTCCTGTGAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719090" ref_strand="+" ref_description="SGN-E719090 [FC06CH06]">
      <seq>ttggcggccaaatcggccgaattgatcctacaatcaatgccaattctccctatttaaagattccatttttatcaaaaaatctcccaaatcttgaaaaccccatttgtttaaacttcaaaataatggctacaaaagtaatggaagtggtgaaaaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcatttccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcagatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaggaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggccaaaaaaggaaaactatccaaagaggtgttttgaaacagtatttaaagcttatgtttttacaagtgttttttactatgaaactatgtaaagttgctagtattgaaagtgtgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80779" stop="84370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81079" g_stop="81548" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="494" r_length="470" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="84070" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="814" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E719090" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81079" e_stop="81548"/>
          <exon e_start="83751" e_stop="84070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTACAATCAATGGAAATTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGT</genome_strand>
        <mrna_strand>ATCCTACAATCAATGCCAATTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718974" ref_strand="+" ref_description="SGN-E718974 [FC06BE11]">
      <seq>gggcgattggcggccaatcggccgaattacaatcaatggaaattctccctatttaaagattccatttttatcaaaaaatctcccaaatcttgaaaaccccatttgtttaaacttcaaaataatggctacaaaagtaatggaagtggtgaaaaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcatttccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcagatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaggaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggccaaaaaaggaaaactatccaaagaggtgttttgaaacagtatttaaagcttatgtttttacaagtgttttttactatgaaactatgtaaagttgctagtattgaaagtgtgtggtttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80783" stop="84375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81086" g_stop="81548" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="493" r_length="463" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="84075" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="818" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E718974" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81086" e_stop="81548"/>
          <exon e_start="83751" e_stop="84075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATGGAAATTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTA</genome_strand>
        <mrna_strand>AATCAATGGAAATTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720951" ref_strand="+" ref_description="SGN-E720951 [FC12BD06]">
      <seq>cccatggggatccgatgacaatcaatggaaattctccctatttaaagattccatttttatcaaaaaatctcccaaatcttgaaaaccccatttgtttaaacttcaaaataatggctacaaaagtaatggaagtggtgaaaaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcatttccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcaaatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaggaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggccaaaaaaggaaaactatccaaagaggtgttttgaaacagtatttaaagcttatgtttttacaagtgttttttactatgaaactatgtaaagttgctagtattgaaagtgtgtggtttngttttgaaaaaaaaaaaannaaanaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80784" stop="84381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81086" g_stop="81548" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="482" r_length="463" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="84072" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="804" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="812" polyA_stop="824"/>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E720951" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81086" e_stop="81548"/>
          <exon e_start="83751" e_stop="84072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATGGAAATTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTT</genome_strand>
        <mrna_strand>AATCAATGGAAATTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAAATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722171" ref_strand="+" ref_description="SGN-E722171 [FC16BG12]">
      <seq>gggcgattggcggcaaatcggccgaattcccatggggatccgacgaatggaaattctccctatttaaagattccatttttatcaaaaaatctcccaaatcttgaaaaccccatttgtttaaacttcaaaataatggctacaaaagtaatggaagtggtgaaaaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcatttccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcaaatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaggaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggccaaaaaaggaaaactatccaaagaggtgttttgaaacagtatttaaagcttatgtttttacaagtgttttttactatgaaactatgtaaagttgctagtattgaaagtgtgtggtttgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80783" stop="84377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81090" g_stop="81548" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="504" r_length="459" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="84077" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="831" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E722171" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81090" e_stop="81548"/>
          <exon e_start="83751" e_stop="84077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAATTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATT</genome_strand>
        <mrna_strand>AATGGAAATTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAAATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720933" ref_strand="+" ref_description="SGN-E720933 [FC12BB07]">
      <seq>gaaattctccctctttaaagattccatttttatcaaaaaatctcccaaatcttgaaaaccccatttgtttaaacttcaaaataatggctacaaaagtaatggaagtggtgaaaaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcatttccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcagatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaggaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggccaaaaaaggaaaactatccaaagaggtgttttgaaacagtatttaaaagcttatgtttttacaagtgttttttactatgaaactatgtaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80794" stop="84345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81094" g_stop="81548" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="84047" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="753" r_length="298" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E720933" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81094" e_stop="81548"/>
          <exon e_start="83751" e_stop="84047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTT-AAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGT</genome_strand>
        <mrna_strand>GAAATTCTCCCTCTTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429033" ref_strand="+" ref_description="SGN-E429033 [STM-51-G6]">
      <seq>aaaattctccctatataaagattccatttttatcaaaaatctcccaaatcttgaaaaccccatttgttaaaacttcaaaaaaatggctacaaaagtaatggaagtggtaaagaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcattcccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcagatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgatcctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctattattcctgtaactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagcaggaggtatttatggatattaagtaggcgaacatgtcttgatgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacaccacaatctgattccccaccagagagtgaagatagtcccgaagacaccaaaggaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggccaaaaaataaaactatccaaagacctatggaaatgaggtgtttataacagtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80795" stop="84284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81094" g_stop="81548" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="83980" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="683" r_length="229" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E429033" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81094" e_stop="81548"/>
          <exon e_start="83751" e_stop="83980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAG</genome_strand>
        <mrna_strand>AAAATTCTCCCTATATAAAGATTCCATTTTTATC-AAAAATCTCCCAAATCTTGAAAACCCCATTTGTTAAAACTTCAAAAAAATGGCTACAAAAGTAATGGAAGTGGTAAAGAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTCCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGATCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATTATTCCTGTAACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGCAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCGAACATGTCTTGATGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACACCACAATCTGATTCCCCACCAGAGAGTGAAGATAGTCCCGAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAA-TAAAACTATCCAAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481711" ref_strand="+" ref_description="SGN-E481711 [cSTD-19-A8]">
      <seq>aaaattctccctatataaagattccatttttatcaaaaatctcccaaatcttgaaaaccccatttgttaaaacttcaaaaaaatggctacaaaagtaatggaagtggtaaagaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcattcccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcagatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgatcctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctattattcctgtaactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagcaggaggtatttatggatattaagtaggcgaacatgtcttgatgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacaccacaatctgattccccaccagagagtgaagatagtcccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80795" stop="84190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81094" g_stop="81548" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="83890" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="594" r_length="140" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E481711" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81094" e_stop="81548"/>
          <exon e_start="83751" e_stop="83890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAA</genome_strand>
        <mrna_strand>AAAATTCTCCCTATATAAAGATTCCATTTTTATC-AAAAATCTCCCAAATCTTGAAAACCCCATTTGTTAAAACTTCAAAAAAATGGCTACAAAAGTAATGGAAGTGGTAAAGAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTCCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGATCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATTATTCCTGTAACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGCAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCGAACATGTCTTGATGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACACCACAATCTGATTCCCCACCAGAGAGTGAAGATAGTCCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481774" ref_strand="+" ref_description="SGN-E481774 [cSTD-19-B5]">
      <seq>aaaattctccctatataaagattccatttttatcaaaaatctcccaaatcttgaaaaccccatttgttaaaacttcaaaaaaatggctacaaaagtaatggaagtggtaaagaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcattcccatcaagatttcaccctaaagatggagtggacacaagggctacttatacattgaactcatatggcactgtacatgtgctgaatgagacatggtgttatggcaaaagagggtttattgaaggaactgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80795" stop="81687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81094" g_stop="81387" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E481774" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81094" e_stop="81387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTT</genome_strand>
        <mrna_strand>AAAATTCTCCCTATATAAAGATTCCATTTTTATC-AAAAATCTCCCAAATCTTGAAAACCCCATTTGTTAAAACTTCAAAAAAATGGCTACAAAAGTAATGGAAGTGGTAAAGAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTCCCATCAAGATTTCACCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCATATGGCACTGTACATGTGCTGAATGAGACATGGTGTTATGGCAAAAGAGGGTTTATTGAAGGAACTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276407" ref_strand="+" ref_description="SGN-E276407 [cLEN-17-O6]">
      <seq>aattctccctatttaaagattccatttttatcaaaaaatctcccaaatcttgaaaaccccatttgtttaaacttcaaaataatggctacaaaagtaatggaagtggtgaaaaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcatttccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcagatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaacgaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80796" stop="81820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81096" g_stop="81520" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E276407" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81096" e_stop="81520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGAT</genome_strand>
        <mrna_strand>AATTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAACGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714281" ref_strand="+" ref_description="SGN-E714281 [FB11AA08]">
      <seq>ttctccctatttaaagattccatttttatcaaaaaatctcccaaatcttgaaaaccccatttgtttaaacttcaaaataatggctacaaaagtaatggaagtggtgaaaaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcatttccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcagatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaggaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggccaaaaaaggaaaactatccaaagaggtgttttgaaacagtatttaaagcttatgtttttacaagtgttttttactatgaaactatgtaaagttgctagtattgaaagtgtgtggtttgtatttgaatctcctgntgaatgttgtgaacaagttttgatagttcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80798" stop="84422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81098" g_stop="81548" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="84122" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="823" r_length="372" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E714281" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81098" e_stop="81548"/>
          <exon e_start="83751" e_stop="84122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGAATCTCCTGTGAAATGTTGTGAACAAGTTTTGATAGTTCCCCT</genome_strand>
        <mrna_strand>TTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGAATCTCCTGNTGAATGTTGTGAACAAGTTTTGATAGTTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715427" ref_strand="+" ref_description="SGN-E715427 [FB14BA05]">
      <seq>atttaaagattccatttttatcaaaaaatctcccaaatcttgaaaaccccatttgtttaaacttcaaaataatggctacaaaagtaatggaagtggtgaaaaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcatttccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcagatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaggaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggccaaaaaaggaaaactatccaaagaggtgttttgaaacagtatttaaagcttatgtttttacaagtgttttttactatgaaactatgtaaagttgctagtattgaaagtgtgtggtttgtatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80806" stop="84379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81106" g_stop="81548" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="84079" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="772" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E715427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81106" e_stop="81548"/>
          <exon e_start="83751" e_stop="84079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTG</genome_strand>
        <mrna_strand>ATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707839" ref_strand="+" ref_description="SGN-E707839 [FA34AE01]">
      <seq>tttaaagattccattcttatcaaaaaatctcccaaatcttgaaaaccccatttgtttaaacttcaaaataatggctacaaaagtaatggaagtggtgaaaaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcatttccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcagatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaggaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggccaaaaaaggaaaactatccaaagaggtgttttgaaacagtatttaaagcttatgtttttacaagtgttttttactatgaaactatgtaaagttgctagtattgaaagtgtgtggtttgtatttgaatctcctgtgaaatgttgtgaacaagttttgataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80807" stop="84414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81107" g_stop="81548" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="84114" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="806" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="807" polyA_stop="824"/>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E707839" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81107" e_stop="81548"/>
          <exon e_start="83751" e_stop="84114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGAATCTCCTGTGAAATGTTGTGAACAAGTTTTGATA</genome_strand>
        <mrna_strand>TTTAAAGATTCCATTCTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGAATCTCCTGTGAAATGTTGTGAACAAGTTTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709369" ref_strand="+" ref_description="SGN-E709369 [FA51CG10]">
      <seq>aggaaagattcatttttatcaaaaaatctcccaaatcttgaaaaccccatttgtttaaacttcaaaataatggctacaaaagtaatggaagtggtgaaaaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcatttccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcagatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaagaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggcccaaaaaaggaaaactatccaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80810" stop="84280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81107" g_stop="81548" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="83980" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="672" r_length="231" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E709369" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81107" e_stop="81548"/>
          <exon e_start="83751" e_stop="83980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGG-CCAAAAAAGGAAAACTATCCAAAGAG</genome_strand>
        <mrna_strand>AGGAAAGATT-CATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAAGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCCAAAAAAGGAAAACTATCCAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300491" ref_strand="+" ref_description="SGN-E300491 [cLET-45-F8]">
      <seq>ttaaagattccatttttatcaaaaaatctcccaaatcttgaaaaccccatttgtttaaacttcaaaataatggctacaaaagtaatggaagtggtgaaaaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcatttccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcagatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80808" stop="84104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81108" g_stop="81548" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="83804" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="495" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E300491" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81108" e_stop="81548"/>
          <exon e_start="83751" e_stop="83804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAG</genome_strand>
        <mrna_strand>TTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718773" ref_strand="+" ref_description="SGN-E718773 [FC05DA11]">
      <seq>aagattccatttttatcaaaaaatctcccaccccttgaaaaccccatttgtttaaacttcaaaataatggctacaaaagtaatggaagtggtgaaaaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcatttccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcaaatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaggaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggccaaaaaaggaaaactatccaaagaggtgttttgaaacagtatttaaagcttatgtttttacaagtgttttttactatgaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80811" stop="84339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81111" g_stop="81548" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="84039" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="727" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E718773" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81111" e_stop="81548"/>
          <exon e_start="83751" e_stop="84039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTA</genome_strand>
        <mrna_strand>AAGATTCCATTTTTATCAAAAAATCTCCCACCCCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAAATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341188" ref_strand="+" ref_description="SGN-E341188 [cTOE-22-P8]">
      <seq>aagattccatttttatcaaaaaatctcccaaatcttgaaaaccccatttgtttaaacttcaaaataatggctacaaaagtaatggaagtggtgaaaaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcatttccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcagatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80811" stop="84092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81111" g_stop="81548" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="83792" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="480" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E341188" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81111" e_stop="81548"/>
          <exon e_start="83751" e_stop="83792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAAC</genome_strand>
        <mrna_strand>AAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369280" ref_strand="+" ref_description="SGN-E369280 [TUS-25-K24]">
      <seq>ccatttttatcaaaaaatctcccaaatcttgaaaaccccatttgtttaaacttcaaaataatggctacaaaagtaatggaagtggtgaaaaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcatttccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcagatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaggaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggccaaaaaaggaaaactatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80817" stop="84273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81117" g_stop="81548" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="83973" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="655" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E369280" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81117" e_stop="81548"/>
          <exon e_start="83751" e_stop="83973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATC</genome_strand>
        <mrna_strand>CCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248973" ref_strand="+" ref_description="SGN-E248973 [cLEF-49-N20]">
      <seq>ccatttttatcaaaaaatctcccaaatcttgaaaaccccatttgtttaaacttcaaaataatggctacaaaagtaatggaagtggtgaaaaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcatttccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcagatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80817" stop="84089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81117" g_stop="81548" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="83789" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="471" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E248973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81117" e_stop="81548"/>
          <exon e_start="83751" e_stop="83789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTAC</genome_strand>
        <mrna_strand>CCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746765" ref_strand="+" ref_description="SGN-E746765 [GI|47104517]">
      <seq>atcaaaaaatctcccaaatcttgaaaaccccatttgtttaaacttcaaaataatggctacaaaagtaatggaagtggtgaaaaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcatttccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcagatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaggaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggccaaaaaaaggaaaactatccaaagaggtgttttgaaacagtatttaaagcttatgtttttacaagtgttttttactatgaaactatgtaaagttgctagtattgaaagtgtgtggtttgtatttgaatctcctgtgaaatgttgtgaacaagttttgatagttcccctttttatgtccctgtgtccccctccggctacatgagggcgaaaaaagggaaggaaagtatggtttttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80825" stop="95365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81125" g_stop="81548" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="84191" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="866" r_length="442" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84192" i_stop="84944" i_length="753">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.775" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84945" g_stop="84961" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="867" r_stop="883" r_length="17" r_score="0.765"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E746765" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81125" e_stop="81548"/>
          <exon e_start="83751" e_stop="84191"/>
          <exon e_start="84945" e_stop="84961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCC-AAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGAATCTCCTGTGAAATGTTGTGAACAAGTTTTGATAGTTCCCCTTTTTATGTCCCTGTGTCCCCCTCCGGCTACATGAGGGCGAAAAAAGGGAAGGAAAGTATGGTTTTTTTCGCGCTTTTGGCATATTGGCCCCCAGTGGGAGGCTTGCACGACGGGTTATTAACTACATTTTCTTTAACGCGAAGTTTCTTGGATACAAACAAACTGGGATTTCACATCAATTGTTGGTATTAATAAATTTGTGTTGAAGCAATAAAGCATAGGGGACCATGGTATGTGTTTGGTAGAATCCAGCAATTTGAATCCAATTGAAATTTATCGTATTAACTCAAAATATATGGTATCGAAATATAATCAGACCTAAGTTTGATTAAGCAGAGTAAACTTGTATTAAATATCTACTTTCAATTATTGATTAACAAATTAATGAAACTTTATTTTGAAAATACTGAATTGCCAAAACCTTAGTCTAGTTAGACCCATGAATTGAACTAAAACCCAAGGGTCGTAAAATATAATGTAGGAGCATTTTGATAAAAGGGTCAAAAATTATCTTTCAATTTTGGTTTATTAGTTGACTATATCCCTGCTGTTAAAATAAAGTTATTTATACTCTCGTCGTCACTAATTTCATCATTCATACCCCTCAATTGATGAAAATCCTCAAATTGAATCAAATTAACTCGAATTTTTAAAAAAGACCCGTTCCCCAACTTAAACCCAATGCTCGACTCGTCTAAAAACCTAACCCAATAAATATTTAACTCATTTGCCTTACCGATTCTTTCAAAAGATCTCAAACCCCACGAATTCAATAACTAATAAATATTTCATTTTTTTCGTAAGTAATTGTTGGATATGTAGCAAAAATTAATAAAAAA</genome_strand>
        <mrna_strand>ATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGAATCTCCTGTGAAATGTTGTGAACAAGTTTTGATAGTTCCCCTTTTTATGTCCCTGTGTCCCCCTCCGGCTACATGAGGGCGAAAAAAGGGAAGGAAAGTATGGTTTTTTTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745043" ref_strand="+" ref_description="SGN-E745043 [GI|77744872]">
      <seq>atggctacaaaagtaatggaagtggtgaaaaatcttgatttaaagaggtatatgggtagatggtatgaaattgcttcatttccatcaagatttcagcctaaagatggagtggacacaagggctacttatacattgaactcagatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaggaatttggtggatcaaatcaatccttggaaaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80877" stop="84236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81177" g_stop="81548" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="83936" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="558" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E745043" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81177" e_stop="81548"/>
          <exon e_start="83751" e_stop="83936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAG</genome_strand>
        <mrna_strand>ATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711616" ref_strand="+" ref_description="SGN-E711616 [FB02CA03]">
      <seq>cgattgcttcatttccatcaagatttcagcctaaagatggagcggacacaagggctacttatacattgaactcagatggcactgtacatgtgctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaggaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggccaaaaaaggaaaactatccaaagaggtgttttgaaacagtatttaaagcttatgtttttacaagtgttttttactatgaaactatgtaaagttgctagtattgaaagtgtgtggtttgtatttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80946" stop="84381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81244" g_stop="81548" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="84080" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="635" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="636" polyA_stop="649"/>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E711616" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81244" e_stop="81548"/>
          <exon e_start="83751" e_stop="84080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGA</genome_strand>
        <mrna_strand>CGATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGCGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349383" ref_strand="+" ref_description="SGN-E349383 [cTOS-1-B5]">
      <seq>gctgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaggaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggccaaaaaaggaaaactatccaaagaggtgttttgaaacagtatttaaagcttatgtttttacaagtgttttttactatgaaactatgtaaagttgctagtattgaaagtgtgtggtttgtatttgaatctcctgtgaaatgttgtgaaacagttttgataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="81035" stop="84414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81335" g_stop="81548" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="84114" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="578" r_length="364" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E349383" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81335" e_stop="81548"/>
          <exon e_start="83751" e_stop="84114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGAATCTCCTGTGAAATGTTGTGAACAAGTTTTGATA</genome_strand>
        <mrna_strand>GCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGAATCTCCTGTGAAATGTTGTGAAACAGTTTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286350" ref_strand="+" ref_description="SGN-E286350 [cLES-11-I6]">
      <seq>tgaatgagacatggtgtaatggcaaaagagggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="81037" stop="84174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81337" g_stop="81548" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="83874" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="336" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E286350" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81337" e_stop="81548"/>
          <exon e_start="83751" e_stop="83874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATA</genome_strand>
        <mrna_strand>TGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714463" ref_strand="+" ref_description="SGN-E714463 [FB11CA12]">
      <seq>ggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaggaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggccaaaaaaggaaaactatccaaagaggtgttttgaaacagtatttaaagcttatgtttttacaagtgttttttactatgaaactatgtaaagttgctagtattgaaagtgtgtggtttgtatttgaatctcctgtgaaatgttgtgaacaagttttgatagttcccctttttannaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="81067" stop="84427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81367" g_stop="81548" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="84128" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="560" r_length="378" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="578"/>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E714463" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81367" e_stop="81548"/>
          <exon e_start="83751" e_stop="84128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGAATCTCCTGTGAAATGTTGTGAACAAGTTTTGATAGTTCCCCTTTTTAT</genome_strand>
        <mrna_strand>GGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGAATCTCCTGTGAAATGTTGTGAACAAGTTTTGATAGTTCCCCTTTTTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714373" ref_strand="+" ref_description="SGN-E714373 [FB11BB01]">
      <seq>ggtttattgaaggaactgcttataaggctgaccctaatagtgatgaggcaaaattgaaagtcaggttttatgttccaccatttttgcctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaggaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggccaaaaaaggaaaactatccaaagaggtgttttgaaacagtatttaaagcttatgtttttacaagtgttttttactatgaaactatgtaaagttgctagtattgaaagtgtgtggtttgtatttgaatctcctgtgaaatgttgtgaacaagttttgatagttcccctttttaaaanaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="81067" stop="84427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81367" g_stop="81548" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="84126" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="558" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="559" polyA_stop="578"/>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E714373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81367" e_stop="81548"/>
          <exon e_start="83751" e_stop="84126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGAATCTCCTGTGAAATGTTGTGAACAAGTTTTGATAGTTCCCCTTTTT</genome_strand>
        <mrna_strand>GGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGAATCTCCTGTGAAATGTTGTGAACAAGTTTTGATAGTTCCCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714734" ref_strand="+" ref_description="SGN-E714734 [FB12BB08]">
      <seq>ctataattcctgttactggtgattattgggttttgtatattgatgaggattatcagtatgctttgattggtcagcctagtaggaggtatttatggatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccacaatctgattccccaccagatagtgaagatagccccaaagacaccaaaggaatttggtggatcaaatcaatccttggaaaataggcaaaaacagtacaatggccaaaaaaggaaaactatccaaagaggtgttttgaaacagtatttaaagcttatgtttttacaagtgttttttactatgaaactatgtaaagttgctagtattgaaagtgtgtggtttgtatttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="81154" stop="84381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81454" g_stop="81548" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83751" g_stop="84080" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="425" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="438"/>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E714734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81454" e_stop="81548"/>
          <exon e_start="83751" e_stop="84080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGGGTAAGTTTCCTTTTTCCTAACTTTTGACATTCAAAGTTGTTGTCTTTGTCATTTGTTATTGAACAATGGATGAGTTGTTGTAGCCTTGGAACAACGGTAAAGTTGGCGTCTTGTGATCAGGTGGGCAGCAGGATGGTGTTAACTATACATGTATAAGATAATTTTTTTTGTACATAGATAGATGGTCAATCTAGTAGGAAGTATCCATGGGTATGTTCCCTGTTTCTAACTTTTGACATTTGAAGTTGTTGTCTTTGTCATTTTTTGTAAAAAGTGGATGAGTTATGGTAGCCTTGGAACAATCGTAAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAACTTTTTGATTTTTGTTTATGTTTTTGGTCAGCCTAGCAGGAAGTATCTATGGGTAAGTTTCATGTTGCTAACCTTTTGATATTCAAAGTTGTCGTCTTTGTCATTGAAAAATGGATGAGTAATGGTAGCCTTGGAACGATGGTGAAGTTGTCGTCTTGTGATCAGGGGGAGGATGGTGTTCACTATATATGTATAGGATAATTTTTTGATTTTTGTTATGTACATAGATATATGGTTAGCTTAGTAGGAAGTATCTATGGGTAATTTCCATGTTGCTAACTTTTTGACGTTTAAAGTTGTCGTCTTTGTCATTTGTCATTGAAAAATGGATGAATAATGTTAGCCTTGGAACGATAGTATAGTTGTCGTTTTGTTATCAGGGGACAGGATGGTGTTCACTGTGTGTGTATGAAATAATTCTTTTGAATTTTATATGTACATAGATAGATGGTCAGTCTAGTAGGAAGTATCTATAGGTATGTTCCCTGTTTCTAACTTTTGACATTCGAAATTTTTGTCTTTGTCATGTGTTGTAAAAAAATTGGACGAGTTATGGTAGCCTTGGAACAATGGTAAAGTTGTCATCTTGTGATGAAGGGGCAGGATGGTGTCAACTATATATGTATAACAGAATAAGATAATTTTTTGAATTTTTTTATGTACATAGATAGATGGTCAGCCTAGTAGGAAGTATCTCTGGTAAATTTCTTTGTTATCCTTTAAAGTTATTGTCTTTAACATTTTGTATGAATTGGATGAGCTTTACTTGGTAGACTGAGGCGGAGTCAGGATTTTTAGTGTAGAAGTTCTAGACTACTTTTGCTTATTAGGTGTTGGATAGATAAGTTGTAGACTCCCTCTGTGCCAATTTGTAAGTGTCTTAGTTTGATTGAGTATGAAGTTTAAGGAACAAAGGGAGGTTCTTGGATCTTGTGGTTTCAAATTAAAGATATGTGTAGTCTTTAAAATGGATGTGTTTTTAGTACATAGAGTTAAAAACATGGTGAAGGTGAGCCTTGAAATAACTGTAAAGTTTTTTTTCGGTGTGATTGATGGGTTAGTCTATGTACATCACACACCCTTGGGTTGTTGCCCTTCCCAGGGCCTTACATGAAGACGGAAAGCTTTGTGTATCGGGCGACCCGTTTAGATGTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGA</genome_strand>
        <mrna_strand>CTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710412" ref_strand="+" ref_description="SGN-E710412 [FA55BD07]">
      <seq>gtgtaatcatgtctagtgaccgagtccttcaacatgctagtttttctgtcattgttatgttgactgctctcacttgtaatttccttgaagagttctatcaagtctttaatacttttagttcttcaagcctgtgataccttatttgcatgaaccaattatatagtttgtggtatctcagtttgttgtttatgttaaatttcatgaatgatcctcgcgttgagcatgttcattccattagatataatttgaagcttttgctttcctaagatcctcgacgtgtcattgacgacattaaacgctctgctgattagatttgtagaaaaccatatttgtctacctttctcttcctcttcgtattgaaatgaatatcgtttactaataaaacattaggcattattccttccatacccaattctgaaacttttgtttcatgtaaactaaagaagtcaatagtatatttagttacacagactccctattttatttcaagccttctgtttgttggtctatcaaatgtgcattttttttattcgactgtggtgtcttggccaagttttcacgcacgtcaattagtacctccctctcactaaggcttggacaagtcgaaagaaatcacctagtgtttttgcatgttttttccaatggattcttgtttttcgtcttaacaaaatgtattttgttggcagatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccccaatctgattccccaccagatagtgaagatagccccaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="82765" stop="84192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83065" g_stop="83892" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="828" r_length="828" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E710412" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83065" e_stop="83892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAG</genome_strand>
        <mrna_strand>GTGTAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCCCAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426105" ref_strand="-" ref_description="SGN-E426105 [STM-46-E13]">
      <seq>tgaaagtttagggggtgctgttcagattatgaaccaagcaacctgccaacggtggccagatcagaaccaacattattcccacaattcaaacaatatttttggtaacatgagctctcaagtttctagcaatggtggaatggcctctttaactcatcctatggaccaaaacaatgatatgttctgcacaagggtggagacttctttgaccggcagatcaaatggaggttcttcaatgcacatacacaatcgtgaaagtgaaaaattaactcatgactcgaggacaaagacaaatgaagactacctctttcagacaacaaagcaacaagttggttttcttcctcagggttatggctcccttgatgatcttatgggtgaaatgaaacgggatcaagatggagccatgttagaaggaggagaattcggatttgatgcttattcacttgcttcaggtttatgaggtttttgtaactagcaagttaggaaggggaggatgtagtgatatagcaaatttttatttgctcatttaagagtctcttaacaatatatgcatactatgccttctttttatattgttcttttcccgtccgggaacgttgttatcgatcgtagaaaactcttagataataattacttgttgctttccaataagatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="95854" stop="93300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95554" g_stop="95170" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95169" i_stop="93857" i_length="1313">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93856" g_stop="93591" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="654" r_length="269" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E426105" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426105" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95554" e_stop="95170"/>
          <exon e_start="93856" e_stop="93591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAGGTAAGCGAACTCTTTTGGTCTGTGTCTTATTTATGAAGCTTTTATTCTGAAGTTTAGTCATAGATTCAAACAAGGTATGCACAAGCTGGCCTAAGCACCACACCTTTTTTTTTTAAAAAAGAAGAATTTTGAGACCTGAATAGCAGCTGAGCGTACTACTGTTTTTAAATACTTGACCTGAGTCCGCGGTCTCTGGTGGTGATAGATCAGATAAACTTTCTCGAAGAAAGGATGCTACTTAACTTGGTGGTCTTTTTAGTGTAAATAAATGTTTATAAGTTTTTTTTTTCAAAAATATATTTGTTTATATGACATCGAGAGTGATTTAAGTTATAGCTGTATTACCTTGTGACCAACACCAAAAGAGATCTATAGAGGGTTACAAACCACCCTGCACACTCTCTACCGCCACCACAAAAGAGGAGTAAAAAACACCATTAAATGGCATTGCCGATTGTCTTCTACTCTGGCAACTTGGACTTGGAGCACCTTTTATTGCTAGAGTTACTTATCACTTGAGGAACTTAATGTCTTGGATGTATACTAGTGAGGTTTGTTTACTTCACATATTTATGAGTCAACTTATAGGAATTCTCCATAAAATCGACCTTTAATAATGAAAAGTAACTTAACAAGCTACTAGCAGTTCGAACTGTCTTCTAGGGTGTGCTGTAGAGGCAATTCTGCTCTCATGAGGGAAGACGAAAGCTTTTCTTTTGAACAGAATTATGCTTTAGAGCTTCACTGTGCCTGTCTGAGAAATAGTTTATATGGTCTACCGCTGAAATATGTTTATACTAACAAAAGAAGACGAAAATGAGTTAAAGGTAGGTCTGATCCTAATGTTTCTGTTAGTTTGTACTAATCGATCAATATCAACACCTAATGCATCTATTGCTGCCTTCAACTTTTAAGCTCATTGTTTTATGCATCTCTTTTCAGTTGAATAATTCTATGTTAGATTCAATTTCTTTCTTAGTTAGTCCCCTTTGCTTTTACAAGCACGGATTTTGAATACTCTCAGTTGTTTCTTCTTAAAGATTAATGGTCATTATTATGTCGGTTTGTTGTGGGTTGATTTCTCAAATGGTCACTCGACTCTCAGCTAGTAATCTGTGAAATCAACTCGTTTATTGCTGTCTAACTTTGTTGCTAAAACTCTCAAAAAATGTTGTCACAGCTGTGTTGGATCCTCCAAAATGCAGTTTTGGAAGATCCGACAAGTACTCAGTGACATCTTCGAAGAGTCTGAGCAACATAACTCAGACATTGGCGTGTAAACGTACTAAATGATTTTGTTTGAAAAAATGCAGGATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTC--AACAACATATGCATACTATGCCTTCTTTTT-CATTGTTATTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTCTTAAACGCTAATTACTTGTTGCTTTTAAAGGGCCGGTT</genome_strand>
        <mrna_strand>TGAAAGTTTAGGGGGTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTATGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGACCGGCAGATCAAATGGAGGTTCTTCAATGCACATACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAGACAAATGAAGACTACCTCTTTCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGTTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGATGGAGCCATGTTAGAAGGAGGAGAATTCGGATTTGATGCTTATTCACTTGCTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGGGAGGATGTAGTGATATAGCAAATTTTTATTTGCTCATTTAAGAGTCTCTTAACAATATATGCATACTATGCCTTCTTTTTATATTGTTCTTTTCCCGTCCGGGAACGTTGTTATCGATCGTAGAAAACTCTTAGATAATAATTACTTGTTGCTTTCCAATAAGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456068" ref_strand="+" ref_description="SGN-E456068 [cSTS-28-M20]">
      <seq>tgaaagtttagggggtgctgttcagattatgaaccaagcaacctgccaacggtggccagatcagaaccaacattattcccacaattcaaacaatatttttggtaacatgagctctcaagtttctagcaatggtggaatggcctctttaactcatcctatggaccaaaacaatgatatgttctgcacaagggtggagacttctttgaccggcagatcaaatggaggttcttcaatgcacatacacaatcgtgaaagtgaaaaattaactcatgactcgaggacaaagacaaatgaagactacctctttcagacaacaaagcaacaagttggttttcttcctcagggttatggctcccttgatgatcttatgggtgaaatgaaacgggatcaagatggagccatgttagaaggaggagaattcggatttgatgcttattcacttgcttcaggtttatgaggtttttgtaactagcaagttaggaaggggaggatgtagtgatatagcaaatttttatttgctcatttaagagtctcttaacaatatatgcatactatgccttcttttttattgttcttttcccgtccgggaacgttgttatcgatcgtagaaaactcttaaatgctaattacttgttgcttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="95854" stop="93300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95554" g_stop="95170" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95169" i_stop="93857" i_length="1313">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93856" g_stop="93592" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="652" r_length="267" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E456068" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95554" e_stop="95170"/>
          <exon e_start="93856" e_stop="93592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAGGTAAGCGAACTCTTTTGGTCTGTGTCTTATTTATGAAGCTTTTATTCTGAAGTTTAGTCATAGATTCAAACAAGGTATGCACAAGCTGGCCTAAGCACCACACCTTTTTTTTTTAAAAAAGAAGAATTTTGAGACCTGAATAGCAGCTGAGCGTACTACTGTTTTTAAATACTTGACCTGAGTCCGCGGTCTCTGGTGGTGATAGATCAGATAAACTTTCTCGAAGAAAGGATGCTACTTAACTTGGTGGTCTTTTTAGTGTAAATAAATGTTTATAAGTTTTTTTTTTCAAAAATATATTTGTTTATATGACATCGAGAGTGATTTAAGTTATAGCTGTATTACCTTGTGACCAACACCAAAAGAGATCTATAGAGGGTTACAAACCACCCTGCACACTCTCTACCGCCACCACAAAAGAGGAGTAAAAAACACCATTAAATGGCATTGCCGATTGTCTTCTACTCTGGCAACTTGGACTTGGAGCACCTTTTATTGCTAGAGTTACTTATCACTTGAGGAACTTAATGTCTTGGATGTATACTAGTGAGGTTTGTTTACTTCACATATTTATGAGTCAACTTATAGGAATTCTCCATAAAATCGACCTTTAATAATGAAAAGTAACTTAACAAGCTACTAGCAGTTCGAACTGTCTTCTAGGGTGTGCTGTAGAGGCAATTCTGCTCTCATGAGGGAAGACGAAAGCTTTTCTTTTGAACAGAATTATGCTTTAGAGCTTCACTGTGCCTGTCTGAGAAATAGTTTATATGGTCTACCGCTGAAATATGTTTATACTAACAAAAGAAGACGAAAATGAGTTAAAGGTAGGTCTGATCCTAATGTTTCTGTTAGTTTGTACTAATCGATCAATATCAACACCTAATGCATCTATTGCTGCCTTCAACTTTTAAGCTCATTGTTTTATGCATCTCTTTTCAGTTGAATAATTCTATGTTAGATTCAATTTCTTTCTTAGTTAGTCCCCTTTGCTTTTACAAGCACGGATTTTGAATACTCTCAGTTGTTTCTTCTTAAAGATTAATGGTCATTATTATGTCGGTTTGTTGTGGGTTGATTTCTCAAATGGTCACTCGACTCTCAGCTAGTAATCTGTGAAATCAACTCGTTTATTGCTGTCTAACTTTGTTGCTAAAACTCTCAAAAAATGTTGTCACAGCTGTGTTGGATCCTCCAAAATGCAGTTTTGGAAGATCCGACAAGTACTCAGTGACATCTTCGAAGAGTCTGAGCAACATAACTCAGACATTGGCGTGTAAACGTACTAAATGATTTTGTTTGAAAAAATGCAGGATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTC--AACAACATATGCATACTATGCCTTCTTTTTCATTGTTATTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTCTTAAACGCTAATTACTTGTTGCTTTTAAAGGGCCGGT</genome_strand>
        <mrna_strand>TGAAAGTTTAGGGGGTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTATGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGACCGGCAGATCAAATGGAGGTTCTTCAATGCACATACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAGACAAATGAAGACTACCTCTTTCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGTTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGATGGAGCCATGTTAGAAGGAGGAGAATTCGGATTTGATGCTTATTCACTTGCTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGGGAGGATGTAGTGATATAGCAAATTTTTATTTGCTCATTTAAGAGTCTCTTAACAATATATGCATACTATGCCTTCTTTTTTATTGTTCTTTTCCCGTCCGGGAACGTTGTTATCGATCGTAGAAAACTCTTAAATGCTAATTACTTGTTGCTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426104" ref_strand="+" ref_description="SGN-E426104 [STM-46-E13]">
      <seq>tgaaagtttagggggtgctgttcagattatgaaccaagcaacctgccaacggtggccagatcagaaccaacattattcccacaattcaaacaatatttttggtaacatgagctctcaagtttctagcaatggtggaatggcctctttaactcatcctatggaccaaaacaatgatatgttctgcacaagggtggagacttctttgaccggcagatcaaatggaggttcttcaatgcacatacacaatcgtgaaagtgaaaaattaactcatgactcgaggacaaagacaaatgaagactacctctttcagacaacaaagcaacaagttggttttcttcctcagggttatggctcccttgatgatcttatgggtgaaatgaaacgggatcaagatggagccatgttagaaggaggagaattcggatttgatgcttattcacttgcttcaggtttatgaggtttttgtaactagcaagttaggaaggggaggatgtagtgatatagcaaatttttatttgctcatttaagagtctcttaacaatatatgcatactatgccttnctttttattggtcttttcccgtccgggaacgttgttatcgatcgtagaaaactcttaaatgctaattacttggtgcttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="95854" stop="93300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95554" g_stop="95170" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95169" i_stop="93857" i_length="1313">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93856" g_stop="93594" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="650" r_length="265" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E426104" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95554" e_stop="95170"/>
          <exon e_start="93856" e_stop="93594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAGGTAAGCGAACTCTTTTGGTCTGTGTCTTATTTATGAAGCTTTTATTCTGAAGTTTAGTCATAGATTCAAACAAGGTATGCACAAGCTGGCCTAAGCACCACACCTTTTTTTTTTAAAAAAGAAGAATTTTGAGACCTGAATAGCAGCTGAGCGTACTACTGTTTTTAAATACTTGACCTGAGTCCGCGGTCTCTGGTGGTGATAGATCAGATAAACTTTCTCGAAGAAAGGATGCTACTTAACTTGGTGGTCTTTTTAGTGTAAATAAATGTTTATAAGTTTTTTTTTTCAAAAATATATTTGTTTATATGACATCGAGAGTGATTTAAGTTATAGCTGTATTACCTTGTGACCAACACCAAAAGAGATCTATAGAGGGTTACAAACCACCCTGCACACTCTCTACCGCCACCACAAAAGAGGAGTAAAAAACACCATTAAATGGCATTGCCGATTGTCTTCTACTCTGGCAACTTGGACTTGGAGCACCTTTTATTGCTAGAGTTACTTATCACTTGAGGAACTTAATGTCTTGGATGTATACTAGTGAGGTTTGTTTACTTCACATATTTATGAGTCAACTTATAGGAATTCTCCATAAAATCGACCTTTAATAATGAAAAGTAACTTAACAAGCTACTAGCAGTTCGAACTGTCTTCTAGGGTGTGCTGTAGAGGCAATTCTGCTCTCATGAGGGAAGACGAAAGCTTTTCTTTTGAACAGAATTATGCTTTAGAGCTTCACTGTGCCTGTCTGAGAAATAGTTTATATGGTCTACCGCTGAAATATGTTTATACTAACAAAAGAAGACGAAAATGAGTTAAAGGTAGGTCTGATCCTAATGTTTCTGTTAGTTTGTACTAATCGATCAATATCAACACCTAATGCATCTATTGCTGCCTTCAACTTTTAAGCTCATTGTTTTATGCATCTCTTTTCAGTTGAATAATTCTATGTTAGATTCAATTTCTTTCTTAGTTAGTCCCCTTTGCTTTTACAAGCACGGATTTTGAATACTCTCAGTTGTTTCTTCTTAAAGATTAATGGTCATTATTATGTCGGTTTGTTGTGGGTTGATTTCTCAAATGGTCACTCGACTCTCAGCTAGTAATCTGTGAAATCAACTCGTTTATTGCTGTCTAACTTTGTTGCTAAAACTCTCAAAAAATGTTGTCACAGCTGTGTTGGATCCTCCAAAATGCAGTTTTGGAAGATCCGACAAGTACTCAGTGACATCTTCGAAGAGTCTGAGCAACATAACTCAGACATTGGCGTGTAAACGTACTAAATGATTTTGTTTGAAAAAATGCAGGATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTC--AACAACATATGCATACTATGCCTTCTTTTTCATTGTTATTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTCTTAAACGCTAATTACTTGTTGCTTTTAAAGGGCCG</genome_strand>
        <mrna_strand>TGAAAGTTTAGGGGGTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTATGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGACCGGCAGATCAAATGGAGGTTCTTCAATGCACATACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAGACAAATGAAGACTACCTCTTTCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGTTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGATGGAGCCATGTTAGAAGGAGGAGAATTCGGATTTGATGCTTATTCACTTGCTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGGGAGGATGTAGTGATATAGCAAATTTTTATTTGCTCATTTAAGAGTCTCTTAACAATATATGCATACTATGCCTTNCTTTTTATTGGTCTTTTCCCGTCCGGGAACGTTGTTATCGATCGTAGAAAACTCTTAAATGCTAATTACTTGGTGCTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548942" ref_strand="+" ref_description="SGN-E548942 [TUS-65-N13](-)">
      <seq>ccgttaaatgacctttcagcaacagccatttgcctcaagacagagtacgagacaatgatacttcaactggccctcatttgcagaacaatcctgttgatttttcaacctccaccatagtttccgtacctttcgaagcttcaagaggagaaacacaatgccgtgaaagtttaggggctgctgttcagattatgaaccaagcaacctgccaacggtggccagatcagaaccaacattattcccacaattcaaacaatatttttggtaacatgagctctcaagtttctagcaatggtggaatggcctctttaactcatcctgtggaccaaaacaatgatatgttctgcacaagggtggagacttctttgaactgcatatcaaatggtagttcttcaatgcacacacacaatcgtgaaagtgaaaaattaactcatgactcgaggacaaaaacaaatgaagactacctcttccagacaacaaagcaacaagttggttttcttcctcagggctatggctcccttgatgatcttatgggtgaaatgaaacaggatcaagatggagccatgttagacggaggagaattcggatttgatgcttattcacttggttcaggtttatgaggtttttgtaactagcaagttaggaaggagaggatctagtgatatagcaaaattttatttgctcatttaagagtctcaacaacatatgcatactatgccttctttttcattgttattttcctgtccaggaacggtgttatcgatcgtagaaaactcttaaacgctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="96015" stop="93318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95715" g_stop="95170" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95169" i_stop="93857" i_length="1313">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93856" g_stop="93619" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="783" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="784" polyA_stop="794"/>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E548942" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95715" e_stop="95170"/>
          <exon e_start="93856" e_stop="93619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAGGTAAGCGAACTCTTTTGGTCTGTGTCTTATTTATGAAGCTTTTATTCTGAAGTTTAGTCATAGATTCAAACAAGGTATGCACAAGCTGGCCTAAGCACCACACCTTTTTTTTTTAAAAAAGAAGAATTTTGAGACCTGAATAGCAGCTGAGCGTACTACTGTTTTTAAATACTTGACCTGAGTCCGCGGTCTCTGGTGGTGATAGATCAGATAAACTTTCTCGAAGAAAGGATGCTACTTAACTTGGTGGTCTTTTTAGTGTAAATAAATGTTTATAAGTTTTTTTTTTCAAAAATATATTTGTTTATATGACATCGAGAGTGATTTAAGTTATAGCTGTATTACCTTGTGACCAACACCAAAAGAGATCTATAGAGGGTTACAAACCACCCTGCACACTCTCTACCGCCACCACAAAAGAGGAGTAAAAAACACCATTAAATGGCATTGCCGATTGTCTTCTACTCTGGCAACTTGGACTTGGAGCACCTTTTATTGCTAGAGTTACTTATCACTTGAGGAACTTAATGTCTTGGATGTATACTAGTGAGGTTTGTTTACTTCACATATTTATGAGTCAACTTATAGGAATTCTCCATAAAATCGACCTTTAATAATGAAAAGTAACTTAACAAGCTACTAGCAGTTCGAACTGTCTTCTAGGGTGTGCTGTAGAGGCAATTCTGCTCTCATGAGGGAAGACGAAAGCTTTTCTTTTGAACAGAATTATGCTTTAGAGCTTCACTGTGCCTGTCTGAGAAATAGTTTATATGGTCTACCGCTGAAATATGTTTATACTAACAAAAGAAGACGAAAATGAGTTAAAGGTAGGTCTGATCCTAATGTTTCTGTTAGTTTGTACTAATCGATCAATATCAACACCTAATGCATCTATTGCTGCCTTCAACTTTTAAGCTCATTGTTTTATGCATCTCTTTTCAGTTGAATAATTCTATGTTAGATTCAATTTCTTTCTTAGTTAGTCCCCTTTGCTTTTACAAGCACGGATTTTGAATACTCTCAGTTGTTTCTTCTTAAAGATTAATGGTCATTATTATGTCGGTTTGTTGTGGGTTGATTTCTCAAATGGTCACTCGACTCTCAGCTAGTAATCTGTGAAATCAACTCGTTTATTGCTGTCTAACTTTGTTGCTAAAACTCTCAAAAAATGTTGTCACAGCTGTGTTGGATCCTCCAAAATGCAGTTTTGGAAGATCCGACAAGTACTCAGTGACATCTTCGAAGAGTCTGAGCAACATAACTCAGACATTGGCGTGTAAACGTACTAAATGATTTTGTTTGAAAAAATGCAGGATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTCAACAACATATGCATACTATGCCTTCTTTTTCATTGTTATTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTCTTAAACGCTA</genome_strand>
        <mrna_strand>CCGTTAAATG-ACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTCAACAACATATGCATACTATGCCTTCTTTTTCATTGTTATTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTCTTAAACGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543833" ref_strand="+" ref_description="SGN-E543833 [TUS-65-N17](-)">
      <seq>atatcaaatggtagttcttcaatgcgcacacacaatcgtgaaagtgaaaaattaactcatgactcgaggacaaaaacaaatgaagacttcctcttccagacaacaaagcaacaagttggttttcttcctcagggctatggctcccttgatgatcttatgggtgaaatgaaacaggatcaagatggagccatgttagacggaggagaattcggatctgatgcttattcacttggttcaggtttatgaggtttttgtaactagcaagttaggaaggagaggatctagtgatatagcaaaattttatttgctcatttaagagtctcaacaacatatgcatactatgccttctttttcattgttttttcctgtccaggaacggtgttatcgatcgtagaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="95643" stop="93329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95343" g_stop="95170" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95169" i_stop="93857" i_length="1313">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93856" g_stop="93629" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="401" r_length="227" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E543833" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95343" e_stop="95170"/>
          <exon e_start="93856" e_stop="93629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAGGTAAGCGAACTCTTTTGGTCTGTGTCTTATTTATGAAGCTTTTATTCTGAAGTTTAGTCATAGATTCAAACAAGGTATGCACAAGCTGGCCTAAGCACCACACCTTTTTTTTTTAAAAAAGAAGAATTTTGAGACCTGAATAGCAGCTGAGCGTACTACTGTTTTTAAATACTTGACCTGAGTCCGCGGTCTCTGGTGGTGATAGATCAGATAAACTTTCTCGAAGAAAGGATGCTACTTAACTTGGTGGTCTTTTTAGTGTAAATAAATGTTTATAAGTTTTTTTTTTCAAAAATATATTTGTTTATATGACATCGAGAGTGATTTAAGTTATAGCTGTATTACCTTGTGACCAACACCAAAAGAGATCTATAGAGGGTTACAAACCACCCTGCACACTCTCTACCGCCACCACAAAAGAGGAGTAAAAAACACCATTAAATGGCATTGCCGATTGTCTTCTACTCTGGCAACTTGGACTTGGAGCACCTTTTATTGCTAGAGTTACTTATCACTTGAGGAACTTAATGTCTTGGATGTATACTAGTGAGGTTTGTTTACTTCACATATTTATGAGTCAACTTATAGGAATTCTCCATAAAATCGACCTTTAATAATGAAAAGTAACTTAACAAGCTACTAGCAGTTCGAACTGTCTTCTAGGGTGTGCTGTAGAGGCAATTCTGCTCTCATGAGGGAAGACGAAAGCTTTTCTTTTGAACAGAATTATGCTTTAGAGCTTCACTGTGCCTGTCTGAGAAATAGTTTATATGGTCTACCGCTGAAATATGTTTATACTAACAAAAGAAGACGAAAATGAGTTAAAGGTAGGTCTGATCCTAATGTTTCTGTTAGTTTGTACTAATCGATCAATATCAACACCTAATGCATCTATTGCTGCCTTCAACTTTTAAGCTCATTGTTTTATGCATCTCTTTTCAGTTGAATAATTCTATGTTAGATTCAATTTCTTTCTTAGTTAGTCCCCTTTGCTTTTACAAGCACGGATTTTGAATACTCTCAGTTGTTTCTTCTTAAAGATTAATGGTCATTATTATGTCGGTTTGTTGTGGGTTGATTTCTCAAATGGTCACTCGACTCTCAGCTAGTAATCTGTGAAATCAACTCGTTTATTGCTGTCTAACTTTGTTGCTAAAACTCTCAAAAAATGTTGTCACAGCTGTGTTGGATCCTCCAAAATGCAGTTTTGGAAGATCCGACAAGTACTCAGTGACATCTTCGAAGAGTCTGAGCAACATAACTCAGACATTGGCGTGTAAACGTACTAAATGATTTTGTTTGAAAAAATGCAGGATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTCAACAACATATGCATACTATGCCTTCTTTTTCATTGTTATTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTC</genome_strand>
        <mrna_strand>ATATCAAATGGTAGTTCTTCAATGCGCACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTTCCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATCTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTCAACAACATATGCATACTATGCCTTCTTTTTCATTGTT-TTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422262" ref_strand="-" ref_description="SGN-E422262 [STM-40-M11]">
      <seq>tgatagatataatgagaattggcaaacttctctcccagccctttgaagttccagtcaactccctttcccgttaaatgaacctttcagcaaacagccatttgcctcaagacagagtacgagacaatgatacttcaactggccctcttttgcagaacaaccctgttgatttttcaacctctgccatagtttccgtacctttcgaggcttcaagaggagaaacacaatgccgtgaaagtttagagggtgctgttcagattatgaaccaagcaacctgccaacggtggccagatcagaaccaacattattcccacaattcaaacaatatttttggtaacatgagctctcaagtttctagcaatggtggaatggcctctttacctcatcctatggaccaaaacaatgatatgttctgcacaagggtggagacttctttgaccggcagatcaaatggaggttcttcaatgcacatacacaatcgtgaaagtgaaaaattaactcatgactcgaggacaaagacaaatgaagactacctctttcagacaacaaagcaacaagttggttttcttcctcagggctatggctcccttgatgatcttatgggtgaaatgaaacgggatcaagatggagccatgttaggaggagaattcggatttgatgcttattcacttggttcaggtttatgaggtttttgtaactagcaagttaggaaagagaggatctagtgatatagcaaaatgttatttgctcatttaagagtctcttaacaatatatgcatactatgcctttttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="96078" stop="93376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95782" g_stop="95170" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95169" i_stop="93857" i_length="1313">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93856" g_stop="93667" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="802" r_length="188" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E422262" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422262" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95782" e_stop="95170"/>
          <exon e_start="93856" e_stop="93667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAGATATTCTAACGAGAATTGGCAAACTTCTCT-CCAG-CCTCTGAAGTTCCAGTCAACCTCCTTT-CCGTTAAATGAACCTTTCAGC-AACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAGGTAAGCGAACTCTTTTGGTCTGTGTCTTATTTATGAAGCTTTTATTCTGAAGTTTAGTCATAGATTCAAACAAGGTATGCACAAGCTGGCCTAAGCACCACACCTTTTTTTTTTAAAAAAGAAGAATTTTGAGACCTGAATAGCAGCTGAGCGTACTACTGTTTTTAAATACTTGACCTGAGTCCGCGGTCTCTGGTGGTGATAGATCAGATAAACTTTCTCGAAGAAAGGATGCTACTTAACTTGGTGGTCTTTTTAGTGTAAATAAATGTTTATAAGTTTTTTTTTTCAAAAATATATTTGTTTATATGACATCGAGAGTGATTTAAGTTATAGCTGTATTACCTTGTGACCAACACCAAAAGAGATCTATAGAGGGTTACAAACCACCCTGCACACTCTCTACCGCCACCACAAAAGAGGAGTAAAAAACACCATTAAATGGCATTGCCGATTGTCTTCTACTCTGGCAACTTGGACTTGGAGCACCTTTTATTGCTAGAGTTACTTATCACTTGAGGAACTTAATGTCTTGGATGTATACTAGTGAGGTTTGTTTACTTCACATATTTATGAGTCAACTTATAGGAATTCTCCATAAAATCGACCTTTAATAATGAAAAGTAACTTAACAAGCTACTAGCAGTTCGAACTGTCTTCTAGGGTGTGCTGTAGAGGCAATTCTGCTCTCATGAGGGAAGACGAAAGCTTTTCTTTTGAACAGAATTATGCTTTAGAGCTTCACTGTGCCTGTCTGAGAAATAGTTTATATGGTCTACCGCTGAAATATGTTTATACTAACAAAAGAAGACGAAAATGAGTTAAAGGTAGGTCTGATCCTAATGTTTCTGTTAGTTTGTACTAATCGATCAATATCAACACCTAATGCATCTATTGCTGCCTTCAACTTTTAAGCTCATTGTTTTATGCATCTCTTTTCAGTTGAATAATTCTATGTTAGATTCAATTTCTTTCTTAGTTAGTCCCCTTTGCTTTTACAAGCACGGATTTTGAATACTCTCAGTTGTTTCTTCTTAAAGATTAATGGTCATTATTATGTCGGTTTGTTGTGGGTTGATTTCTCAAATGGTCACTCGACTCTCAGCTAGTAATCTGTGAAATCAACTCGTTTATTGCTGTCTAACTTTGTTGCTAAAACTCTCAAAAAATGTTGTCACAGCTGTGTTGGATCCTCCAAAATGCAGTTTTGGAAGATCCGACAAGTACTCAGTGACATCTTCGAAGAGTCTGAGCAACATAACTCAGACATTGGCGTGTAAACGTACTAAATGATTTTGTTTGAAAAAATGCAGGATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTC--AACAACATATGCATACTATGCCTTCTTTTTCATTGTTATTT</genome_strand>
        <mrna_strand>TGATAGATA---TAATGAGAATTGGCAAACTTCTCTCCCAGCCCTTTGAAGTTCCAGTCAACTCCCTTTCCCGTTAAATGAACCTTTCAGCAAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCTTTTGCAGAACAACCCTGTTGATTTTTCAACCTCTGCCATAGTTTCCGTACCTTTCGAGGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGAGGGTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTACCTCATCCTATGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGACCGGCAGATCAAATGGAGGTTCTTCAATGCACATACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAGACAAATGAAGACTACCTCTTTCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGATGGAGCCATGTT--A-GGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAAGAGAGGATCTAGTGATATAGCAAAATGTTATTTGCTCATTTAAGAGTCTCTTAACAATATATGCATACTATGCCTT-TTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206621" ref_strand="+" ref_description="SGN-E206621 [cLEC-31-D21]">
      <seq>ttccgtacctttcgaagcttcaagaggagaaacacaatgccgtgaaagtttaggggctgctgttcagattatgaaccaagcaacctgccaacggtggccagatcagaaccaacattattcccacaattcaaacaatatttttggtaacatgagctctcaagtttctagcaatggtggaatggcctctttaactcatcctgtggaccaaaacaatgatatgttctgcacaagggtggagacttctttgaactgcatatcaaatggtagttcttcaatgcacacacacaatcgtgaaagtgaaaaattaactcatgactcgaggacaaaaacaaatgaagactacctcttccagacaacaaagcaacaagttggttttcttcctcagggctatggctcccttgatgatcttatgggtgaaatgaaacaggatcaagatggagccatgttagacggaggagaattcggatttgatgcttattcacttggttcaggtttatgaggtttttgtaactagcaagttaggaaggagaggatctagtgatatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="95896" stop="93437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95596" g_stop="95170" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95169" i_stop="93857" i_length="1313">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93856" g_stop="93737" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="547" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E206621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95596" e_stop="95170"/>
          <exon e_start="93856" e_stop="93737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAGGTAAGCGAACTCTTTTGGTCTGTGTCTTATTTATGAAGCTTTTATTCTGAAGTTTAGTCATAGATTCAAACAAGGTATGCACAAGCTGGCCTAAGCACCACACCTTTTTTTTTTAAAAAAGAAGAATTTTGAGACCTGAATAGCAGCTGAGCGTACTACTGTTTTTAAATACTTGACCTGAGTCCGCGGTCTCTGGTGGTGATAGATCAGATAAACTTTCTCGAAGAAAGGATGCTACTTAACTTGGTGGTCTTTTTAGTGTAAATAAATGTTTATAAGTTTTTTTTTTCAAAAATATATTTGTTTATATGACATCGAGAGTGATTTAAGTTATAGCTGTATTACCTTGTGACCAACACCAAAAGAGATCTATAGAGGGTTACAAACCACCCTGCACACTCTCTACCGCCACCACAAAAGAGGAGTAAAAAACACCATTAAATGGCATTGCCGATTGTCTTCTACTCTGGCAACTTGGACTTGGAGCACCTTTTATTGCTAGAGTTACTTATCACTTGAGGAACTTAATGTCTTGGATGTATACTAGTGAGGTTTGTTTACTTCACATATTTATGAGTCAACTTATAGGAATTCTCCATAAAATCGACCTTTAATAATGAAAAGTAACTTAACAAGCTACTAGCAGTTCGAACTGTCTTCTAGGGTGTGCTGTAGAGGCAATTCTGCTCTCATGAGGGAAGACGAAAGCTTTTCTTTTGAACAGAATTATGCTTTAGAGCTTCACTGTGCCTGTCTGAGAAATAGTTTATATGGTCTACCGCTGAAATATGTTTATACTAACAAAAGAAGACGAAAATGAGTTAAAGGTAGGTCTGATCCTAATGTTTCTGTTAGTTTGTACTAATCGATCAATATCAACACCTAATGCATCTATTGCTGCCTTCAACTTTTAAGCTCATTGTTTTATGCATCTCTTTTCAGTTGAATAATTCTATGTTAGATTCAATTTCTTTCTTAGTTAGTCCCCTTTGCTTTTACAAGCACGGATTTTGAATACTCTCAGTTGTTTCTTCTTAAAGATTAATGGTCATTATTATGTCGGTTTGTTGTGGGTTGATTTCTCAAATGGTCACTCGACTCTCAGCTAGTAATCTGTGAAATCAACTCGTTTATTGCTGTCTAACTTTGTTGCTAAAACTCTCAAAAAATGTTGTCACAGCTGTGTTGGATCCTCCAAAATGCAGTTTTGGAAGATCCGACAAGTACTCAGTGACATCTTCGAAGAGTCTGAGCAACATAACTCAGACATTGGCGTGTAAACGTACTAAATGATTTTGTTTGAAAAAATGCAGGATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGC</genome_strand>
        <mrna_strand>TTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206742" ref_strand="+" ref_description="SGN-E206742 [cLEC-31-D19]">
      <seq>ttccgtacctttcgaagcttcaagaggagaaacacaatgccgtgaaagtttaggggctgctgttcagattatgaaccaagcaacctgccaacggtggccagatcagaaccaacattattcccacaattcaaacaatatttttggtaacatgagctctcaagtttctagcaatggtggaatggcctctttaactcatcctgtggaccaaaacaatgatatgttctgcacaagggtggagacttctttgaactgcatatcaaatggtagttcttcaatgcacacacacaatcgtgaaagtgaaaaattaactcatgactcgaggacaaaaacaaatgaagactacctcttccagacaacaaagcaacaagttggttttcttcctcagggctatggctcccttgatgatcttatgggtgaaatgaaacaggatcaagatggagccatgttagacggaggagaattcggatttgatgcttattcacttggttcaggtttatgaggtttttgtaactagcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="95896" stop="93466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95596" g_stop="95170" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95169" i_stop="93857" i_length="1313">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93856" g_stop="93766" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="518" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E206742" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95596" e_stop="95170"/>
          <exon e_start="93856" e_stop="93766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAGGTAAGCGAACTCTTTTGGTCTGTGTCTTATTTATGAAGCTTTTATTCTGAAGTTTAGTCATAGATTCAAACAAGGTATGCACAAGCTGGCCTAAGCACCACACCTTTTTTTTTTAAAAAAGAAGAATTTTGAGACCTGAATAGCAGCTGAGCGTACTACTGTTTTTAAATACTTGACCTGAGTCCGCGGTCTCTGGTGGTGATAGATCAGATAAACTTTCTCGAAGAAAGGATGCTACTTAACTTGGTGGTCTTTTTAGTGTAAATAAATGTTTATAAGTTTTTTTTTTCAAAAATATATTTGTTTATATGACATCGAGAGTGATTTAAGTTATAGCTGTATTACCTTGTGACCAACACCAAAAGAGATCTATAGAGGGTTACAAACCACCCTGCACACTCTCTACCGCCACCACAAAAGAGGAGTAAAAAACACCATTAAATGGCATTGCCGATTGTCTTCTACTCTGGCAACTTGGACTTGGAGCACCTTTTATTGCTAGAGTTACTTATCACTTGAGGAACTTAATGTCTTGGATGTATACTAGTGAGGTTTGTTTACTTCACATATTTATGAGTCAACTTATAGGAATTCTCCATAAAATCGACCTTTAATAATGAAAAGTAACTTAACAAGCTACTAGCAGTTCGAACTGTCTTCTAGGGTGTGCTGTAGAGGCAATTCTGCTCTCATGAGGGAAGACGAAAGCTTTTCTTTTGAACAGAATTATGCTTTAGAGCTTCACTGTGCCTGTCTGAGAAATAGTTTATATGGTCTACCGCTGAAATATGTTTATACTAACAAAAGAAGACGAAAATGAGTTAAAGGTAGGTCTGATCCTAATGTTTCTGTTAGTTTGTACTAATCGATCAATATCAACACCTAATGCATCTATTGCTGCCTTCAACTTTTAAGCTCATTGTTTTATGCATCTCTTTTCAGTTGAATAATTCTATGTTAGATTCAATTTCTTTCTTAGTTAGTCCCCTTTGCTTTTACAAGCACGGATTTTGAATACTCTCAGTTGTTTCTTCTTAAAGATTAATGGTCATTATTATGTCGGTTTGTTGTGGGTTGATTTCTCAAATGGTCACTCGACTCTCAGCTAGTAATCTGTGAAATCAACTCGTTTATTGCTGTCTAACTTTGTTGCTAAAACTCTCAAAAAATGTTGTCACAGCTGTGTTGGATCCTCCAAAATGCAGTTTTGGAAGATCCGACAAGTACTCAGTGACATCTTCGAAGAGTCTGAGCAACATAACTCAGACATTGGCGTGTAAACGTACTAAATGATTTTGTTTGAAAAAATGCAGGATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAG</genome_strand>
        <mrna_strand>TTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543827" ref_strand="+" ref_description="SGN-E543827 [TUS-65-N13]">
      <seq>gggattcctgcatctttggagcttgatcaactgcagcagagcaagtgtgccacacacataggagagttgaatcctttggatgagtcaggactgcatacagtggccagtacattcacgaactctagattggttggtagcgcaaacagctctatgcccaatgtatcaaataatcctattttgcttcaagtaaattcccagcaaccactgacggggatgggatttggaaatcagacttctctcaacgtagcctcttttagctctgaggccttcaatactggtgtaagtggttcttccaattttctggaccatgatagatattctaacgagaattggcaaacttctctccagcctctgaagttccagtcaacctcctttccgttaaatgaacctttcagcaacagccatttgcctcaagacagagtacgagacaatgatacttcaactggccctcatttgcagaacaatcctgttgatttttcaacctccaccatagtttccgtacctttcgaagcttcaagaggagaaacacaatgccgtgaaagtttaggggctgctgttcagattatgaaccaagcaacctgccaacggtggccagatcagaaccaacattattcccacaattcaaacaatatttttggtaacatgagctctcaagtttctagcaatggtggaatggcctctttaactcatcctgtggaccaaaacaatgatatgttctgcacaaaggtggagacttctttgaactgcatatcaaatggtagttcttcaatgcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="96390" stop="95016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96090" g_stop="95316" g_length="775"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="775" r_length="775" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E543827" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96090" e_stop="95316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGTACATTCACGAACTCTAGATTGGTTGGTAGCGCAAACAGCTCTATGCCCAATGTATCAAATAATCCTATTTTGCTTCAAGTAAATTCCCAGCAACCACTGACGGGGATGGGATTTGGAAATCAGACTTCTCTCAACGTAGCCTCTTTTAGCTCTGAGGCCTTCAATACTGGTGTAAGTGGTTCTTCCAATTTTCTGGACCATGATAGATATTCTAACGAGAATTGGCAAACTTCTCTCCAGCCTCTGAAGTTCCAGTCAACCTCCTTTCCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACA</genome_strand>
        <mrna_strand>GGGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGTACATTCACGAACTCTAGATTGGTTGGTAGCGCAAACAGCTCTATGCCCAATGTATCAAATAATCCTATTTTGCTTCAAGTAAATTCCCAGCAACCACTGACGGGGATGGGATTTGGAAATCAGACTTCTCTCAACGTAGCCTCTTTTAGCTCTGAGGCCTTCAATACTGGTGTAAGTGGTTCTTCCAATTTTCTGGACCATGATAGATATTCTAACGAGAATTGGCAAACTTCTCTCCAGCCTCTGAAGTTCCAGTCAACCTCCTTTCCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAAGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543834" ref_strand="+" ref_description="SGN-E543834 [TUS-65-N17]">
      <seq>gggattcctgcatctttggagcttgatcaactgcagcagagcaagtgtgccacacacataggagagttgaatcctttggatgagtcaggactgcatacagtggccagtacattcacgaactctagattggttggtagcgcaaacagctctatgcccaatgtatcaaataatcctattttgcttcaagtaaattcccagcaaccactgacggggatgggatttggaaatcagacttctctcaacgtagcctcttttagctctgaggccttcaatactggtgtaagtggttcttccaattttctggaccatgatagatattctaacgagaattggcaaacttctctccagcctctgaagttccagtcaacctcctttccgttaaatgaacctttcagcaacagccatttgcctcaagacagagtacgagacaatgatacttcaactggccctcatttgcagaacaatcctgttgatttttcaacctccaccatagtttccgtacctttcgaagcttcaagagggagaaacacaatgccgtgaaaagtttaggggctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="96390" stop="95237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96090" g_stop="95537" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E543834" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96090" e_stop="95537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGTACATTCACGAACTCTAGATTGGTTGGTAGCGCAAACAGCTCTATGCCCAATGTATCAAATAATCCTATTTTGCTTCAAGTAAATTCCCAGCAACCACTGACGGGGATGGGATTTGGAAATCAGACTTCTCTCAACGTAGCCTCTTTTAGCTCTGAGGCCTTCAATACTGGTGTAAGTGGTTCTTCCAATTTTCTGGACCATGATAGATATTCTAACGAGAATTGGCAAACTTCTCTCCAGCCTCTGAAGTTCCAGTCAACCTCCTTTCCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGA-GGAGAAACACAATGCCGTG-AAAGTTTAGGGGCTGC</genome_strand>
        <mrna_strand>GGGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGTACATTCACGAACTCTAGATTGGTTGGTAGCGCAAACAGCTCTATGCCCAATGTATCAAATAATCCTATTTTGCTTCAAGTAAATTCCCAGCAACCACTGACGGGGATGGGATTTGGAAATCAGACTTCTCTCAACGTAGCCTCTTTTAGCTCTGAGGCCTTCAATACTGGTGTAAGTGGTTCTTCCAATTTTCTGGACCATGATAGATATTCTAACGAGAATTGGCAAACTTCTCTCCAGCCTCTGAAGTTCCAGTCAACCTCCTTTCCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGAGGGAGAAACACAATGCCGTGAAAAGTTTAGGGGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306427" ref_strand="+" ref_description="SGN-E306427 [cLEX-13-N14]">
      <seq>ggattcctgcatctttggagcttgatcaactgcagcagagcaagtgtgccacacacataggagagttgaatcctttggatgagtcaggactgcatacagtggccagtacattcacgaactctagattggttggtagcgcaaacagctctatgcccaatgtatcaaataatcctattttgcttcaagtaaattcccagcaaccactgacggggatgggatttggaaatcagacttctctcaacgtagcctcttttagctctgaggccttcaatactggtgtaagtggttcttccaattttctggaccatgatagatattctaacgagaattggcaaacttctctccagcctctgaagttccagtcaacctcctttccgttaaatgaacctttcagcaacagccatttgcctcaagacagagtacgagacaatgatacttcaactggccctcatttgcagaacaatcctgttgatttttcaacctccaccatagtttccgtacctttcgaagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="96389" stop="95276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96089" g_stop="95576" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E306427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96089" e_stop="95576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGTACATTCACGAACTCTAGATTGGTTGGTAGCGCAAACAGCTCTATGCCCAATGTATCAAATAATCCTATTTTGCTTCAAGTAAATTCCCAGCAACCACTGACGGGGATGGGATTTGGAAATCAGACTTCTCTCAACGTAGCCTCTTTTAGCTCTGAGGCCTTCAATACTGGTGTAAGTGGTTCTTCCAATTTTCTGGACCATGATAGATATTCTAACGAGAATTGGCAAACTTCTCTCCAGCCTCTGAAGTTCCAGTCAACCTCCTTTCCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTC</genome_strand>
        <mrna_strand>GGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGTACATTCACGAACTCTAGATTGGTTGGTAGCGCAAACAGCTCTATGCCCAATGTATCAAATAATCCTATTTTGCTTCAAGTAAATTCCCAGCAACCACTGACGGGGATGGGATTTGGAAATCAGACTTCTCTCAACGTAGCCTCTTTTAGCTCTGAGGCCTTCAATACTGGTGTAAGTGGTTCTTCCAATTTTCTGGACCATGATAGATATTCTAACGAGAATTGGCAAACTTCTCTCCAGCCTCTGAAGTTCCAGTCAACCTCCTTTCCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422261" ref_strand="+" ref_description="SGN-E422261 [STM-40-M11]">
      <seq>cttgtctgatgatcaagacaaggctcaccagggaggcggagaaggtgaaagaggatcacagctttcaggtaatgcagatcaaaacgggaaggttaacaagaaaaggaaggatgaagagtatgaaagcgatgaaaatggaaatgacgatgaagatcctggaactcagaagaaacctcgtgttgtttgggctatagagcttcacaagaagtttgttacagcagttcatcagttaggccttgaaaaagctgtgcctaagaggattcttgatctgatgaatgttgaaggacttacaagagagaatgtggcgagccatctccagaagtataggctcttcttgaaaaggatcaatgcggcagatgcccagcaagccaacttggctgccgctgcattagggggtaaagattctgcgtacatgcgaatgggttcactggatgggcttggtggttttcgaacgttggctggatcaggaaggttcggtcaggctagcttatcatcatcatatgcatcaggaggcatgcttggcagactaaatagtccttctggtgtaagccttcacaatctagcatcttcacctatgctccaacctaatcatggtcaaaatttgagtaacaactccatcaatgccttgatgaaatttaatgcaaacgttccacctgcaagccagaatgctaatttgttccaagggattcctgcatcgttggagcttgatcaactgcagcagagtaagagtgcccacggataggagagttgaatcatttggatgagtcaggactgcatacagcggccagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="97730" stop="95683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97433" g_stop="97192" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97191" i_stop="97087" i_length="105">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97086" g_stop="97010" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="319" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97009" i_stop="96454" i_length="556">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96453" g_stop="95983" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="789" r_length="470" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E422261" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97433" e_stop="97192"/>
          <exon e_start="97086" e_stop="97010"/>
          <exon e_start="96453" e_stop="95983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCTGATGATCAAGACAAGGCTCACCAGGGAGGAGGAGAAGGCGAAAGAGGATCACAGGTTTCAGGTAATGCAGATCAAAACGGGAAGGTTAACAAGAAAAGGAAGGATGAAGAATATGAAAGCGATGAAAATGGAAATGATGATGAAGATCCCGGAACTCAGAAGAAACCTCGTGTAGTTTGGGCTATAGAGCTTCACAAGAAGTTTGTTACAGCAGTTCATCAGTTAGGCCTTGAAAGTGAGTTTTTTTAGCATTGATGTGGTTATCTTAGATTCATCGTCTATTTTTTTATGTTTGTTCCCATATTAATGGACTTATTTCTCAATAATGTTTCTGATGCAGAAGCTGTGCCTAAGAGGATTCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAGAATGTGGCGAGCCATCTCCAGGCATTATTCTCTCTTTGTTCTTAATAATTCCCTATGTTTGCATTTGAGTTCCTTTTCTTTATATTTTACAAAATTAGGAGTTTCGGCTATAGACCTTTTGTGAGATGTGAAAATGGATGAGGTGAATGTTAAAAGAAGGTACCAAGAATAGGAAGAATCATATATCCTTGCTACATCTTAGGAAAAATATAATTCTTGCTATGTTTTCACAAATGTTATTTAGCTCATTCAAACATTTCATGTTTAAATATGCATGTGGATATATAATAAAGGGAAACAATACAAATCTAAAGCTAGATTATTTCCTCCAACATTGTCTTAACGATTACAAAGGTGTTCCAGATCTGTTTTGATATGCTTTTCCTTGAGTCGAGGGTCTATTGGAAACAACCTCTCTACCTCCCAAGATTGGGGTAAGGTCTGCTTGTGGGATCAGGTTTGTTGTTGTTACAAAGGTGTTGCAGGAGTCGTCTGTCCTTCGGCCTTCGTGTCCTCTACTTTTTGGTAAAAGCACAAAGGTCTAAAATTTTAATTCGTCTTTTGTTCTGTGCCACAGAAGTATAGGCTCTTCTTGAAAAGGATCAATGCGGCAGATGCCCAGCAAGCCAACTTGGCTGCCGCTGCATTAGGGGGTAAAGATTCTGCATACATGCGAATGGGTTCACTGGACGGGCTTGGTGGTTTTCGAACGTTGGCTGGATCAGGTAGGTTCGGTCAAGCTAGCTTATCATCATCATATGCATCAGGAGGCATGCTTGGCAGACTAAATAGTCCTTCTGGTGTAAGCCTTCGCAATCTAGCATCTACACCTATTCTCCAACCTAATCATGGTCAAAATATGAGTAATAACTCCCTCAATGCCTTGATGAAATTTAACGCAAATGTTCCACCTGCTAGCCAGAATGCTAATTTTTTCCAAGGGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGT</genome_strand>
        <mrna_strand>CTTGTCTGATGATCAAGACAAGGCTCACCAGGGAGGCGGAGAAGGTGAAAGAGGATCACAGCTTTCAGGTAATGCAGATCAAAACGGGAAGGTTAACAAGAAAAGGAAGGATGAAGAGTATGAAAGCGATGAAAATGGAAATGACGATGAAGATCCTGGAACTCAGAAGAAACCTCGTGTTGTTTGGGCTATAGAGCTTCACAAGAAGTTTGTTACAGCAGTTCATCAGTTAGGCCTTGAAA.........................................................................................................AAGCTGTGCCTAAGAGGATTCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAGAATGTGGCGAGCCATCTCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATAGGCTCTTCTTGAAAAGGATCAATGCGGCAGATGCCCAGCAAGCCAACTTGGCTGCCGCTGCATTAGGGGGTAAAGATTCTGCGTACATGCGAATGGGTTCACTGGATGGGCTTGGTGGTTTTCGAACGTTGGCTGGATCAGGAAGGTTCGGTCAGGCTAGCTTATCATCATCATATGCATCAGGAGGCATGCTTGGCAGACTAAATAGTCCTTCTGGTGTAAGCCTTCACAATCTAGCATCTTCACCTATGCTCCAACCTAATCATGGTCAAAATTTGAGTAACAACTCCATCAATGCCTTGATGAAATTTAATGCAAACGTTCCACCTGCAAGCCAGAATGCTAATTTGTTCCAAGGGATTCCTGCATCGTTGGAGCTTGATCAACTGCAGCAGAGTAAGAGTGCC-CACGGATAGGAGAGTTGAATCATTTGGATGAGTCAGGACTGCATACAGCGGCCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448055" ref_strand="+" ref_description="SGN-E448055 [cSTS-1-J5]">
      <seq>caagtctgatgatcaagacaaggctcaccagggaggcggagaaggtgaaagaggatcacagctttcaggtaatgcagatcaaaacgggaaggttaacaagaaaaggaaggatgaagagtatgaaagcgatgaaaatggaaatgacgatgaagatcctggaactcagaagaaacctcgtgttgtttgggctatagagcttcacaagaagtttgttacagcagttcatcagttaggccttgaaaaagctgtgcctaagaggattcttgatctgatgaatgttgaaggacttacaagagagaatgtggcgagccatctccagaagtataggctcttcttgaaaaggatcaatgcggcagatgcccagcaagccaacttggctgccgctgcattagggggtaaagattctgcgtacatgcgaatgggttcactggatgggcttggtggttttcgaacgttggcttgatcaggaaggttcggtcaggctagcttatcatcatcatatgcatcangaggcatgcttggcagactaaatagtccttctgggtgtagccttcacaatctagcatcttcacctatgctccaacctaatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="97733" stop="95880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97433" g_stop="97192" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97191" i_stop="97087" i_length="105">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97086" g_stop="97010" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="319" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97009" i_stop="96454" i_length="556">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96453" g_stop="96180" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="593" r_length="274" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E448055" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97433" e_stop="97192"/>
          <exon e_start="97086" e_stop="97010"/>
          <exon e_start="96453" e_stop="96180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCTGATGATCAAGACAAGGCTCACCAGGGAGGAGGAGAAGGCGAAAGAGGATCACAGGTTTCAGGTAATGCAGATCAAAACGGGAAGGTTAACAAGAAAAGGAAGGATGAAGAATATGAAAGCGATGAAAATGGAAATGATGATGAAGATCCCGGAACTCAGAAGAAACCTCGTGTAGTTTGGGCTATAGAGCTTCACAAGAAGTTTGTTACAGCAGTTCATCAGTTAGGCCTTGAAAGTGAGTTTTTTTAGCATTGATGTGGTTATCTTAGATTCATCGTCTATTTTTTTATGTTTGTTCCCATATTAATGGACTTATTTCTCAATAATGTTTCTGATGCAGAAGCTGTGCCTAAGAGGATTCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAGAATGTGGCGAGCCATCTCCAGGCATTATTCTCTCTTTGTTCTTAATAATTCCCTATGTTTGCATTTGAGTTCCTTTTCTTTATATTTTACAAAATTAGGAGTTTCGGCTATAGACCTTTTGTGAGATGTGAAAATGGATGAGGTGAATGTTAAAAGAAGGTACCAAGAATAGGAAGAATCATATATCCTTGCTACATCTTAGGAAAAATATAATTCTTGCTATGTTTTCACAAATGTTATTTAGCTCATTCAAACATTTCATGTTTAAATATGCATGTGGATATATAATAAAGGGAAACAATACAAATCTAAAGCTAGATTATTTCCTCCAACATTGTCTTAACGATTACAAAGGTGTTCCAGATCTGTTTTGATATGCTTTTCCTTGAGTCGAGGGTCTATTGGAAACAACCTCTCTACCTCCCAAGATTGGGGTAAGGTCTGCTTGTGGGATCAGGTTTGTTGTTGTTACAAAGGTGTTGCAGGAGTCGTCTGTCCTTCGGCCTTCGTGTCCTCTACTTTTTGGTAAAAGCACAAAGGTCTAAAATTTTAATTCGTCTTTTGTTCTGTGCCACAGAAGTATAGGCTCTTCTTGAAAAGGATCAATGCGGCAGATGCCCAGCAAGCCAACTTGGCTGCCGCTGCATTAGGGGGTAAAGATTCTGCATACATGCGAATGGGTTCACTGGACGGGCTTGGTGGTTTTCGAACGTTGGCTGGATCAGGTAGGTTCGGTCAAGCTAGCTTATCATCATCATATGCATCAGGAGGCATGCTTGGCAGACTAAATAGTCCTTCTGGTGTAAGCCTTCGCAATCTAGCATCTACACCTATTCTCCAACCTAATCATG</genome_strand>
        <mrna_strand>CAAGTCTGATGATCAAGACAAGGCTCACCAGGGAGGCGGAGAAGGTGAAAGAGGATCACAGCTTTCAGGTAATGCAGATCAAAACGGGAAGGTTAACAAGAAAAGGAAGGATGAAGAGTATGAAAGCGATGAAAATGGAAATGACGATGAAGATCCTGGAACTCAGAAGAAACCTCGTGTTGTTTGGGCTATAGAGCTTCACAAGAAGTTTGTTACAGCAGTTCATCAGTTAGGCCTTGAAA.........................................................................................................AAGCTGTGCCTAAGAGGATTCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAGAATGTGGCGAGCCATCTCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATAGGCTCTTCTTGAAAAGGATCAATGCGGCAGATGCCCAGCAAGCCAACTTGGCTGCCGCTGCATTAGGGGGTAAAGATTCTGCGTACATGCGAATGGGTTCACTGGATGGGCTTGGTGGTTTTCGAACGTTGGCTTGATCAGGAAGGTTCGGTCAGGCTAGCTTATCATCATCATATGCATCANGAGGCATGCTTGGCAGACTAAATAGTCCTTCTGGGTGTAGCCTTCACAATCTAGCATCTTCACCTATGCTCCAACCTAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698200" ref_strand="+" ref_description="SGN-E698200 [FA05CC08]">
      <seq>cgctttggtgaaagggaaaactatgataattttccagttggtatgagggttcttgctgttgatgatgacccaatttgtttgaagttgttggatggactgcttaggaaatgccagtatcacgttactacgacgagtcaggcaagatcggcgttgaagatgttgagggaaaacaaagatagatttgacttggtgatcagtgatgtccacatgcctgatatggatggctttaaacttctggagcttgttggtctcgagatggatcttcccgtcataatgttgtcagcaaacagtgatagcaaacttgtaatgaagggaataactcacggtgcttgtgactatttggtgaagcctgtccggcttgaggagctaaagaatatatggcaacatgtaataaggagaaagaaagttgagcctaagaagcaaaacaagtctgatgatcaagacaaggctcaccagggaggaggagaaggcgaaagaggatcacaggtttcaggtaatgcagatcaaaacgggaaggttaacaagaaaaggaaggatgaagaatatgaaagcgatgaaaatggaaatgatgatgaagatcccggaactcagaagaaacctcgtgtagtttgggctatacagcttcacaagaagtttgttacagcagttcatcagttaggcccttgaaaaagctgtgccctaagaggattcttgatctgatgaatgttgaaggacttacaagagaagaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="99378" stop="96725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99083" g_stop="98963" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98962" i_stop="97909" i_length="1054">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97908" g_stop="97756" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="274" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97755" i_stop="97585" i_length="171">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97584" g_stop="97192" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="668" r_length="394" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97191" i_stop="97087" i_length="105">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97086" g_stop="97025" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="732" r_length="64" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E698200" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99083" e_stop="98963"/>
          <exon e_start="97908" e_stop="97756"/>
          <exon e_start="97584" e_stop="97192"/>
          <exon e_start="97086" e_stop="97025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGTGGTGAAAGGGAAAACTATGATAATTTTCCAGTTGGTATGAGGGTTCTTGCTGTTGATGATGACCCAATTTGTTTGAAGTTGTTGGATGGACTGCTTAGGAAATGCCAGTATCACGGTATTTATGTTTTTTTTTTCTGTGTTTTTGCTTAAAGATTTCATTTTTTTGGTTTATCAATTTGGACTAGTTGGTAAAGTTTCTGAATTGATTCAGTTTGATGCTATTTGCAATTTCTGCTGTTTGGGAAGTTGTTTTCTGTTCCATTCTGAAAAAAAATCAGAACTTTGTTCTGATTTAGACTTTTATAAGGAGAAGTTTAGATCTTCAACTCCCAGAAAACAAAGGTTTAGAATTTGTTTTTCATAGTTCCAAGATTTTTCATGTTTCTCAATTGCTGTTAATATTGCTTTTCCTCTTCATGCATGGTTCATGTTCCCTTTAAATTGGATTGTTGCTTTTCAACAATGAAAGTCAACAGCTATATATGCTGTGTAATCTCACAAGTGGGGTCGAGGGTAAGTGGACGCATACCGTACTCCAACCTCGTGGACATAGAGAGGCTGTTTCGGGAAGACCCTGTGGTCTTTTCAACCATGGAAGTCATAAATAAAAAAAAGAATCTTGAAGTTCTTTTAATTTGATTTTGGCCTTTTCAACTTGACTGTGTAGTTGAGCTTAAATGGATAGCTCTCTCCGACTTGTTTGGGATTGAGGCGCAGATGTTGTTGTGTACAGCTTACTATGGAGTATAATCAAGTCGAAATTCTCCATTTTGTACTTTTGTTTTGGATAGTCTGGTTTGAAGCCTAGTTTTCTCTCAGATGTTCATGACAGCTTTGGTGGGCGAGTGTGTATGTGCACGCATACGTATGTTAAACTTATATTTTAGCTTATTTAGTATAGTATGGTGATTATATGATGTGAACTTAAATGTATAAGTGAGATTCATATAGCCGACCCCAACTGTTTGGAACTGAGGTGTAGTTTTTGTAGTTGTTCATGACAGCGTTGGAGTTCAACTATGTGTACCATTGTAAATTTATGGGGAGATTCGAAACTTCTAACTTGATTTCCTTCATTTATTTTCGGTTCTTTTCATCTGACTGAAATGTTTTTATTTCCCCAATCAAAATTAACTTGCATTTTCTGAAAATGGTCTGTTGTTTCACAGTTACTACGACGAGTCAGGCAAGATCGGCGTTGAAGATGTTGAGGGAAAACAAAGATAGATTTGACTTGGTGATCAGTGATGTCCACATGCCTGATATGGATGGCTTTAAACTTCTGGAGCTTGTTGGTCTCGAGATGGATCTTCCCGTCATAAGTAAAAATACCTTCATTATCTTAATTGTTTATCTGTCCTTGCTGTTCTTTTCCCTTGGCTGCCGTCAGATAAAATATTGTTGAATCAAGACTTGAAGATCTGTGTTGCTTATATCAAATTAATCCGTTAAAGTTTATTTCGTTTCTTGACCATTGACCTATTCTTGTCCAGTGTTGTCAGCAAACAGTGATAGCAAACTTGTAATGAAGGGAATAACTCACGGTGCTTGTGACTATTTGGTGAAGCCTGTCCGGCTTGAGGAGCTAAAGAATATATGGCAACATGTAATAAGGAGAAAGAAAGTTGAGCCTAAGAAGCAAAACAAGTCTGATGATCAAGACAAGGCTCACCAGGGAGGAGGAGAAGGCGAAAGAGGATCACAGGTTTCAGGTAATGCAGATCAAAACGGGAAGGTTAACAAGAAAAGGAAGGATGAAGAATATGAAAGCGATGAAAATGGAAATGATGATGAAGATCCCGGAACTCAGAAGAAACCTCGTGTAGTTTGGGCTATAGAGCTTCACAAGAAGTTTGTTACAGCAGTTCATCAGTTAGG-CCTTGAAAGTGAGTTTTTTTAGCATTGATGTGGTTATCTTAGATTCATCGTCTATTTTTTTATGTTTGTTCCCATATTAATGGACTTATTTCTCAATAATGTTTCTGATGCAGAAGCTGTG-CCTAAGAGGATTCTTGATCTGATGAATGTTGAAGGACTTACAAGAG-AGAATGTG</genome_strand>
        <mrna_strand>CGCTTTGGTGAAAGGGAAAACTATGATAATTTTCCAGTTGGTATGAGGGTTCTTGCTGTTGATGATGACCCAATTTGTTTGAAGTTGTTGGATGGACTGCTTAGGAAATGCCAGTATCACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTACGACGAGTCAGGCAAGATCGGCGTTGAAGATGTTGAGGGAAAACAAAGATAGATTTGACTTGGTGATCAGTGATGTCCACATGCCTGATATGGATGGCTTTAAACTTCTGGAGCTTGTTGGTCTCGAGATGGATCTTCCCGTCATAA...........................................................................................................................................................................TGTTGTCAGCAAACAGTGATAGCAAACTTGTAATGAAGGGAATAACTCACGGTGCTTGTGACTATTTGGTGAAGCCTGTCCGGCTTGAGGAGCTAAAGAATATATGGCAACATGTAATAAGGAGAAAGAAAGTTGAGCCTAAGAAGCAAAACAAGTCTGATGATCAAGACAAGGCTCACCAGGGAGGAGGAGAAGGCGAAAGAGGATCACAGGTTTCAGGTAATGCAGATCAAAACGGGAAGGTTAACAAGAAAAGGAAGGATGAAGAATATGAAAGCGATGAAAATGGAAATGATGATGAAGATCCCGGAACTCAGAAGAAACCTCGTGTAGTTTGGGCTATACAGCTTCACAAGAAGTTTGTTACAGCAGTTCATCAGTTAGGCCCTTGAAA.........................................................................................................AAGCTGTGCCCTAAGAGGATTCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAGAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725239" ref_strand="+" ref_description="SGN-E725239 [FC26CA07]">
      <seq>gagggtttcaatcagcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttcgcacaagtcattcatgattaagaagaagctagcgaagaagcagaggcagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtagacactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagtttttaatggaaaaacttctcggattatgttttattttcgagttcaataggagctcatttgctgaggaaacagactgtgcttttaattttggaagagatttatatattaatgaccgattatgaagtcgttttgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaancccccccccgggggccccttttttatttttttttgggcccccaaaaatggggggggaaaaagggggaaatttttttttggggggaaattttttccccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111576" stop="100202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111277" g_stop="111222" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111221" i_stop="111137" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111136" g_stop="111033" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="160" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110943" g_stop="110732" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="372" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110731" i_stop="108735" i_length="1997">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108734" g_stop="108705" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="402" r_length="30" r_score="0.800"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108704" i_stop="107543" i_length="1162">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107542" g_stop="107494" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="451" r_length="49" r_score="0.735"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107493" i_stop="105232" i_length="2262">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105231" g_stop="105132" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="551" r_length="100" r_score="0.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E725239" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111277" e_stop="111222"/>
          <exon e_start="111136" e_stop="111033"/>
          <exon e_start="110943" e_stop="110732"/>
          <exon e_start="108734" e_stop="108705"/>
          <exon e_start="107542" e_stop="107494"/>
          <exon e_start="105231" e_stop="105132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGTTTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCTGTTAAATGTTGGTTAATAGTAGTATTTTGTTATTGCATTTTCATGCATTGAGTTATCTGTTTGTGATTTATATATTAATGACCGATTATTGCATTTTCATCCATATTGTAGGCCGTTAGTTGTAAACCATGTTGATTTGAGTTTTAAACATATAAAGGTATGTGCTTTAAGCTTATATCGGAAGAGTGTTTCTCCACTCATCACCTGTACCTACACCTTAGATATTTCCACTGTCAACTTAGTATCAAGAGCCATATTGCATTTTATCCTTTGCCTTTTTATTTGCATATCAAGGCGGCTGCTTCATCGGCTGTTATGTCATTGTGACACACCCCAGAGACCTAGCACATACTTTTGCGATGATTGATTAATCTACTTGTAGTCCTTATGGATGGTGTTGAAAGTGTATTTGATCAGAAGTGTGGACTTGGGAATCTTTCGAGTCCTAAGATATCTTGATTAATTAGAAGTGTTGATCTGGATATCCTGCACTTCAGTGTCTGTAGGAATGTGCATGAAGAAAAATGTTCTTTACTGCAATTATTCATAAACATGGACTGCACAAAAACTTTATTCCAAACCAGGGTGAGAATGACATCCATGAGTGCTAACTGAGCATTTGCCATTGGCTAATATATAGGTTTTGTGTTCTATATCAGATTGAGCTCTCAGCACTTGTCATAGCTAGAGGTGTTTATATTTTCAAAGTGTATTCTACTGGTACTTGATGCATGCATTTGTATAGCTGAATTGTTATTCCATGGACAAGTATAGTTCTGTGGTGTAAATTATGAGGGGTTGGATATCTTTCATGTTGTAGAAATGACTGAACATATATAGTTCCTTTGTGCGACTTTTTTTTTAAAAAAAAGATATTCCAGCCCTCTGTCTATTTTCTTCATATTGCAAAGAGGTGATTGCTTCTTCTTACAGTAGAAGCTTTACATAGTGACTTGGCCAGAGGCTTTCAGCTTGTGTTAGTACTGTATTGCCATTTGCACTTCTGTGATGCAGCAATGGGGCAAATGTATTGTATTATACTTGTAATGTATTCTGGATCATGGACGTATAAAGCAATTGGTTAAATTTGTAAAAATCTCATGCAACTTTTCACCATTCTATGGAAATTGGTTTGTGGATTTCTTTTCGTATTAACAATAAAATAGATGAAAGGCGTTAATTGACACCAGTAAAGCCTGTGTATTAGTGTCTTTCATAGCACATTTATTCAATCTATTTATATCTAAACTTGAACATATTAAGGGTAGAAAATGAGTGTTCCATGTATGAATATTTAGATTTTCAAATTTATCGACATTCGGATATCAGAGTTAAACGTACTCTGGCTGATAATTTTTTGTAAAATCCCACATTTATGTCAGTCATGGAGGGATCCTCTAAAACACATCGAAAGCTCTGAAGATAGTCATTTTGCATTTTGCACTTTGAGAACCCAGAATCTTTTTAAAAAATGTCTTTCGTGATTAACTTAGTCGGTATGGAGGGTGGTTATTCATACGGATAATTCGGGATTGTTCCCCCTTTAATGTTTATGTGATTTGCAAGCTATTACACATGGGTTTTGCTTAGTTGATATAGAGGATGATTATCTATAAGGATGATTCGGCATCGATCCCTTCAATGTTTTCTGAGTTGAGTCTGTAACGTAGGTCTTGCCTAGTACAGTATGCATCCTTCTTTAATGTCTTTTGAGTTAGTCTGTCACATAAGTCTTTGTCTAGTAAGGTTGACAAAAGATGTGACAAAGGTTATAACAACTACGGAATAACAGTGAAGTTCATTATGGTGAAATTCAAGCCGTTTAGGATAAGCTTCACGTAATTGTGTGGACAAGCGGAGTCTGACGACAATATCTTAAAAATCTGTTGATTTTATTTAAATACTCCCATAATTTTTAATTTAATAAGTTGCTCAGGTTTCAGATAACTTGAATTTTAATTTAATAAGTTGCTCAGGTTTCATATGATAAAAAATTAAAAACATTAAACAAAAAAAAAGCCTCTAAAAATAAACAAATGAGAAATATCATCGGTAGAGTTTGTAGGAATATATATAGGAGAAGTTAAAGAAGTAGAGTTCCACTTCAGCTCAAATTTTATCTAAATTTAAATTTCAAATATCACGTTTAAGAGAAAATCAGTTTATTACTCTTTCTTAGTATTTTTTTTGAAAAAATGTAATGCATATATTTTTATAACTAATTTAAATATTTTATTAGTTATCAATAACGGAATAAAAAGAGACTAGTTTGTTACTCCTCTTTATCTTTATTATTTTATTTTATTTTCTAGCGTTTTTCTTCCTCTTTTTCTTTTATTTTGTTATTTTAATATTTTCCCAACGTTTTCTCTTTTTTTTTCTCTCTTGTGTTTATCTTCTTTACTTTTTTTTATTATATGTTATTTTTTTTACTTTTTTTTTAAAATTATTATATCTCTATTTTTTATTTAATATTTAAACCAAACATAAGGATACGTTTTTGAAATAGTAAGAGTTCATTTAGATCTTTTATGTTGTGACTTCTAAAAATATGCATTTTTGTAGGTTATTTTAGTGAATATAAATACTATCTTTACTTTTCTAAATTGAATAGTATTATCTGAAATTATCCATACTCTCAAAATCTAAATTTAAAAATATATTTATAATATCTAAAAAATATTTTTAAACTAATGAAAATAATTCTCTCTCTTTTTTAAAAATCTAATGTAACTTCAAAGACAAATACTTTTAGTTCAAATTCTTAAAATAATATTTAGTAAATTAATCTTAAAATTATCAAGTAGCATTTTTATTAACTTACCACTTGGCTTAATCAAGTTACAAAATACAAATTACTCTCCTTTATTATACATAAATATCTTCTTGAACATTGTCATTGTTGGGAGATGTTGAACTTAGGGCAATTTGGTTTGGATTGTAGATATATAATGTCTAACATGAGTTAAATATGAGTAACTTGTAAATCAATTGAGTATTAATTAATTTTTTCTAATAAAAAACGATGAAAAATGAGTTAGCTATCAATCGATACTATTTATTGGTTATCTTATTTAAGTTAAAAAACTCATTTTTTTTCATAACCTAGCTATTTTTTGCCGACGANNTATAGATAGATCAAATCAGTCATTTAATCTATTATATCCAAAAATATAATACTAATAAAAAAATTATATCTAAAAAAAAAAATAACAAGAAAAATAAATCCTGAATAATATATAGGATACAATATATATGAGAAGTTAAGAAGTAGAGTTCTATTCCAACTCAATTTTTATTTATATTTAAATTTCAAACATCACATCTTTCTATTAAAAAAGATTAGTTTATTACTTTATTTTATTTTTATTTGTGACTCCTCTTAATGTTCTTTACTTTTTTTTTAATTATTAATATTATTAGTATTTTTACTTCTGGTGCTAATATTAATTTTATTATTACTATTATCATATATCTTTTACTTTTCTAAATTAAATAGTATTATTTGAAATTCGTTCTATGAGTAAGAGTTCATTTAGAACTCTTCTACTATGGATTTTTATTTTTTAAAATAAAGATAAAGGTTTTTTATTTATTAAAATCTAATGTAACTTTAAATACAAATACAAATACTTTTAATTTAAATTTTTTGACAATATTTATTAAATTAATCTTAAAATTGTCAAGTGACATTTTATTAACTTGATCTCTTGGCTAAATCACATTACAAACTACTCTCCTTTATTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAAAAATAAAAATAAAATATAAATATAAAAATATATAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATATAAATACATATATATATATACATATAAAAACAAACATACATATAAATCAATATATATATTATATCCAAAACATAATAATAATAATAAAAAATTATATCCAAAATAATAATAATAAATAAAAATTCCTAAACAAAAGGAGAGAAAGTTACTATTTCATTTATTCTAATATATTATTTCAACTTTTATAGAAAATTATGGTTTACTGTTTCAACTAATATGAAAAATTATGGTTTACTATTTCAACTAATATAAAAAATTATTGTTTTGAGGGATAAATATAGCAAAAAAATATTCAAGATGAAAAAAAAAAAGAAATCTTAATATTATGTGGCTTTGCATGTTTTTAGCATTAGTAAAACAAAATATTAGAAAATTTGAAGAATAAAGAGAAAGTATAGCAATTCTCATGGCTCTCCTTTTTTATAGGATTATCTCAAAATTAACCTAAGGTGTCAAAGATATAAACTCTTGTTTAAGGGATCATTAAAAAAAGTAGTCAAATTAATTAACAAGTAATTAACGTATAACTATATATTATATGGACTGATTTGAAAGAGGGAATTTGTGTTTTGAAGAAAGTGAGCTTAGATGAGGGAGAAGACAAAGAGTGATAATAATAATAGAATTATTATTTCCCTAATTAATTTCTCTTTCATTCTTGATTCTTCTTCCTTGTTGAAAACTCACTTTTTTTAATTATTTGGTTAGTATTAAACTCCCTCTTTTTTTTCTAGAGTTTAATTTATCATCATGGCCGCTAATTTATCCTTGGAAGAGCTTAAGAATGAGAAGGTTGATCTTGTAAGTATAATCTTTCCTCTCTTCTCCGGTCGTAGCAGATTCAGAATTTAAATTTTATTCGATAAGTTCTAGCTATAATATTCATTGAGATTTAAGTAATTTTCGTATTATGTTTTGTGTAAAAATAATGATGAATTCGTTAAATATCTATTGATCCCATAGTGCATCTATCTCGATCAGGTTCAGAATTTAAAAATTATAATATTTATTGAGATTTTAGTAATTTTTGCATTATGTTGTGTAAAAATGATGATGAATTCTTAAATTGTTGATTCATATTGCATTTGTCCTTTTCATGGTGACCGAATTCAGAATTTAAATTTTATTCAATACGTGTTCTAATTATGATATTTGTTTAGATTTTAATAACTTTCGCATAATGTTTTGTGTAAAGGTAAAAATAATGATGAATTCGTGCATATACCTCTCTTGTGGTGACCAAGATTCAAAATTTATGTTTTATTTGATGAGTTCTGATTATAATAATTTTTTGTGATTTTAGTCACTTTCATATTATATTTTGTGTTAAAAAATATGATGAATTTGTTAAATTTGTTGATTTCACATAGGGCATGAGTGCCACTCTGACTCAGAATTTAGAGTTTATTCAATGAGTTCTAATTAAAATATTTTTTGGATTTTAGTAACTTTACATTATGTTTTTGTGTAAAAATGATATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GAGGGTTTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCCGGGGGCCCCTTTTTTATTTTTTTTTGGGCCCCCAAAAATGGGGGGGGAAAAAGGGGGAAATTTTTTTTTGGGGGGAAATTTTTTCCCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718071" ref_strand="+" ref_description="SGN-E718071 [FC03CD02]">
      <seq>gggcgattggcggccaatcggccgaattgagggtttaatcagcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttcgcacaagtcattcatgattaagaagaagctagcgaagaagcagaggcagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtagacactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagtttttaatggaaaaacttctcggattatgttttattttcgagttcaataggagctcatttgctgaggaaacagactgtgcttttaattttggaagagatttatatattaatgaccgattatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagggaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111579" stop="100202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111274" g_stop="111222" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="83" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111221" i_stop="111137" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111136" g_stop="111033" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="187" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110943" g_stop="110745" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="386" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110744" i_stop="107548" i_length="3197">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.72"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107547" g_stop="107471" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="463" r_length="77" r_score="0.649"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E718071" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111274" e_stop="111222"/>
          <exon e_start="111136" e_stop="111033"/>
          <exon e_start="110943" e_stop="110745"/>
          <exon e_start="107547" e_stop="107471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCTGTTAAATGTTGGTTAATAGTAGTATTTTGTTATTGCATTTTCATGCATTGAGTTATCTGTTTGTGATTTATATATTAATGACCGATTATTGCATTTTCATCCATATTGTAGGCCGTTAGTTGTAAACCATGTTGATTTGAGTTTTAAACATATAAAGGTATGTGCTTTAAGCTTATATCGGAAGAGTGTTTCTCCACTCATCACCTGTACCTACACCTTAGATATTTCCACTGTCAACTTAGTATCAAGAGCCATATTGCATTTTATCCTTTGCCTTTTTATTTGCATATCAAGGCGGCTGCTTCATCGGCTGTTATGTCATTGTGACACACCCCAGAGACCTAGCACATACTTTTGCGATGATTGATTAATCTACTTGTAGTCCTTATGGATGGTGTTGAAAGTGTATTTGATCAGAAGTGTGGACTTGGGAATCTTTCGAGTCCTAAGATATCTTGATTAATTAGAAGTGTTGATCTGGATATCCTGCACTTCAGTGTCTGTAGGAATGTGCATGAAGAAAAATGTTCTTTACTGCAATTATTCATAAACATGGACTGCACAAAAACTTTATTCCAAACCAGGGTGAGAATGACATCCATGAGTGCTAACTGAGCATTTGCCATTGGCTAATATATAGGTTTTGTGTTCTATATCAGATTGAGCTCTCAGCACTTGTCATAGCTAGAGGTGTTTATATTTTCAAAGTGTATTCTACTGGTACTTGATGCATGCATTTGTATAGCTGAATTGTTATTCCATGGACAAGTATAGTTCTGTGGTGTAAATTATGAGGGGTTGGATATCTTTCATGTTGTAGAAATGACTGAACATATATAGTTCCTTTGTGCGACTTTTTTTTTAAAAAAAAGATATTCCAGCCCTCTGTCTATTTTCTTCATATTGCAAAGAGGTGATTGCTTCTTCTTACAGTAGAAGCTTTACATAGTGACTTGGCCAGAGGCTTTCAGCTTGTGTTAGTACTGTATTGCCATTTGCACTTCTGTGATGCAGCAATGGGGCAAATGTATTGTATTATACTTGTAATGTATTCTGGATCATGGACGTATAAAGCAATTGGTTAAATTTGTAAAAATCTCATGCAACTTTTCACCATTCTATGGAAATTGGTTTGTGGATTTCTTTTCGTATTAACAATAAAATAGATGAAAGGCGTTAATTGACACCAGTAAAGCCTGTGTATTAGTGTCTTTCATAGCACATTTATTCAATCTATTTATATCTAAACTTGAACATATTAAGGGTAGAAAATGAGTGTTCCATGTATGAATATTTAGATTTTCAAATTTATCGACATTCGGATATCAGAGTTAAACGTACTCTGGCTGATAATTTTTTGTAAAATCCCACATTTATGTCAGTCATGGAGGGATCCTCTAAAACACATCGAAAGCTCTGAAGATAGTCATTTTGCATTTTGCACTTTGAGAACCCAGAATCTTTTTAAAAAATGTCTTTCGTGATTAACTTAGTCGGTATGGAGGGTGGTTATTCATACGGATAATTCGGGATTGTTCCCCCTTTAATGTTTATGTGATTTGCAAGCTATTACACATGGGTTTTGCTTAGTTGATATAGAGGATGATTATCTATAAGGATGATTCGGCATCGATCCCTTCAATGTTTTCTGAGTTGAGTCTGTAACGTAGGTCTTGCCTAGTACAGTATGCATCCTTCTTTAATGTCTTTTGAGTTAGTCTGTCACATAAGTCTTTGTCTAGTAAGGTTGACAAAAGATGTGACAAAGGTTATAACAACTACGGAATAACAGTGAAGTTCATTATGGTGAAATTCAAGCCGTTTAGGATAAGCTTCACGTAATTGTGTGGACAAGCGGAGTCTGACGACAATATCTTAAAAATCTGTTGATTTTATTTAAATACTCCCATAATTTTTAATTTAATAAGTTGCTCAGGTTTCAGATAACTTGAATTTTAATTTAATAAGTTGCTCAGGTTTCATATGATAAAAAATTAAAAACATTAAACAAAAAAAAAGCCTCTAAAAATAAACAAATGAGAAATATCATCGGTAGAGTTTGTAGGAATATATATAGGAGAAGTTAAAGAAGTAGAGTTCCACTTCAGCTCAAATTTTATCTAAATTTAAATTTCAAATATCACGTTTAAGAGAAAATCAGTTTATTACTCTTTCTTAGTATTTTTTTTGAAAAAATGTAATGCATATATTTTTATAACTAATTTAAATATTTTATTAGTTATCAATAACGGAATAAAAAGAGACTAGTTTGTTACTCCTCTTTATCTTTATTATTTTATTTTATTTTCTAGCGTTTTTCTTCCTCTTTTTCTTTTATTTTGTTATTTTAATATTTTCCCAACGTTTTCTCTTTTTTTTTCTCTCTTGTGTTTATCTTCTTTACTTTTTTTTATTATATGTTATTTTTTTTACTTTTTTTTTAAAATTATTATATCTCTATTTTTTATTTAATATTTAAACCAAACATAAGGATACGTTTTTGAAATAGTAAGAGTTCATTTAGATCTTTTATGTTGTGACTTCTAAAAATATGCATTTTTGTAGGTTATTTTAGTGAATATAAATACTATCTTTACTTTTCTAAATTGAATAGTATTATCTGAAATTATCCATACTCTCAAAATCTAAATTTAAAAATATATTTATAATATCTAAAAAATATTTTTAAACTAATGAAAATAATTCTCTCTCTTTTTTAAAAATCTAATGTAACTTCAAAGACAAATACTTTTAGTTCAAATTCTTAAAATAATATTTAGTAAATTAATCTTAAAATTATCAAGTAGCATTTTTATTAACTTACCACTTGGCTTAATCAAGTTACAAAATACAAATTACTCTCCTTTATTATACATAAATATCTTCTTGAACATTGTCATTGTTGGGAGATGTTGAACTTAGGGCAATTTGGTTTGGATTGTAGATATATAATGTCTAACATGAGTTAAATATGAGTAACTTGTAAATCAATTGAGTATTAATTAATTTTTTCTAATAAAAAACGATGAAAAATGAGTTAGCTATCAATCGATACTATTTATTGGTTATCTTATTTAAGTTAAAAAACTCATTTTTTTTCATAACCTAGCTATTTTTTGCCGACGANNTATAGATAGATCAAATCAGTCATTTAATCTATTATATCCAAAAATATAATACTAATAAAAAAATTATATCTAAAAAAAAAAATAACAAGAAAAATAAATCCTGAATAATATATAGGATACAATA</genome_strand>
        <mrna_strand>GGTTT-AATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308496" ref_strand="+" ref_description="SGN-E308496 [cLEY-21-O24]">
      <seq>agagcttaagcgccgggaatctccaacagcaaaaatgccttcgcacaagtcattcatgattaagaagaagctagcgaagaagcagaggcagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtagacactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagtttttaatggaaaaacttctcggattatgttttattttcgagttcaataggagctcatttgctgaggaaacagactgtgcttttaattttggaagagatttatatattaatgaccgattatgaagtcgttttgtttaatttgagctgttaaatgttggttaatagtagtattttgttattgcattttcatgcattgagttatctgtttgtgatttatatattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111558" stop="110345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111258" g_stop="111222" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111221" i_stop="111137" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111136" g_stop="111033" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="141" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110943" g_stop="110634" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="451" r_length="310" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E308496" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111258" e_stop="111222"/>
          <exon e_start="111136" e_stop="111033"/>
          <exon e_start="110943" e_stop="110634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCTGTTAAATGTTGGTTAATAGTAGTATTTTGTTATTGCATTTTCATGCATTGAGTTATCTGTTTGTGATTTATATATTAATGACCGATTAT</genome_strand>
        <mrna_strand>AGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCTGTTAAATGTTGGTTAATAGTAGTATTTTGTTATTGCATTTTCATGCATTGAGTTATCTGTTTGTGATTTATATATTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341961" ref_strand="+" ref_description="SGN-E341961 [cTOF-10-E11]">
      <seq>tcagcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttcgcacaagtcattcatgattaagaagaagctagcgaagaagcagaggcagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtagacactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagtttttaatggaaaaacttctcggattatgttttattttcgagttcaataggagctcatttgctgaggaaacagactgtgcttttaattttggaagagatttatatattaatgaccgattatgaagtcgttttgtttaatttgagctgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111566" stop="110417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111266" g_stop="111222" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111221" i_stop="111137" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111136" g_stop="111033" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="149" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110943" g_stop="110710" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="383" r_length="234" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E341961" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111266" e_stop="111222"/>
          <exon e_start="111136" e_stop="111033"/>
          <exon e_start="110943" e_stop="110710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCTGTTAAATGTTGGT</genome_strand>
        <mrna_strand>TCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCTGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609444" ref_strand="-" ref_description="SGN-E609444 [25453]">
      <seq>ttcaatcagcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttctcataagtcattcatgattaagaagaagctagcgaagaagcagagacagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtaggcactggcgtagaaccaagctaggattttaaggtggaagaatcgtgttttatttaagttttttatggaaaaacttctcggattatgttttattttctggctcagtaggagctcatttgctgaggaaacagattgtgtttttaatttcggaagagatttatatattaatgactgattatgaagttctgtttaattaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111571" stop="100200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111271" g_stop="111222" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111221" i_stop="111137" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111136" g_stop="111033" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="154" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110943" g_stop="110711" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="389" r_length="235" r_score="0.863"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E609444" ref_strand="-">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609444" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111271" e_stop="111222"/>
          <exon e_start="111136" e_stop="111033"/>
          <exon e_start="110943" e_stop="110711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAG-TC-GTTTTGTTTAATTTGAGCTGTTAAATGTTGG</genome_strand>
        <mrna_strand>TTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCTCATAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGACAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGGCACTGGCGTAGAACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTTATGGAAAAACTTCTCGGATTATGTTTTATTTTCTGGCTCAGTAGGAGCTCATTTGCTGAGGAAACAGATTGTGTTTTTAATTTCGGAAGAGATTTATATATTAATGACTGATTATGAAGTTCTGTTTAATTAAAAAAAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343218" ref_strand="+" ref_description="SGN-E343218 [cTOF-17-J10]">
      <seq>tttcaatcagcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttcgcacaagtcattcatgattaagaagaagctagcgaagaagcagaggcagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtagacactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagtttttaatggaaaaacttctcggattatgttttattttcgagttcaataggagctcatttgctgaggaaacagactgtgcttttaattttggaagagatttatatattaatgaccgattatgaagtcgttttgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111572" stop="110431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111272" g_stop="111222" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111221" i_stop="111137" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111136" g_stop="111033" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="155" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110943" g_stop="110723" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="376" r_length="221" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E343218" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111272" e_stop="111222"/>
          <exon e_start="111136" e_stop="111033"/>
          <exon e_start="110943" e_stop="110723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCT</genome_strand>
        <mrna_strand>TTTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344429" ref_strand="+" ref_description="SGN-E344429 [cTOF-14-A24]">
      <seq>tttcaatcagcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttcgcacaagtcattcatgattaagaagaagctagcgaagaagcagaggcagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtagacactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagtttttaatggaaaaacttctcggattatgttttattttcgagttcaataggagctcatttgctgaggaaacagactgtgcttttaattttggaagagatttatatattaatgaccgattatgaagtcgttttgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111572" stop="110431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111272" g_stop="111222" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111221" i_stop="111137" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111136" g_stop="111033" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="155" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110943" g_stop="110723" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="376" r_length="221" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E344429" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111272" e_stop="111222"/>
          <exon e_start="111136" e_stop="111033"/>
          <exon e_start="110943" e_stop="110723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCT</genome_strand>
        <mrna_strand>TTTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347606" ref_strand="+" ref_description="SGN-E347606 [cTOF-26-D23]">
      <seq>atcagcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttcgcacaagtcattcatgattaagaagaagctagcgaagaagcagaggcagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtagacactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagtttttaatggaaaaacttctcggattatgttttattttcgagttcaataggagctcatttgctgaggaaacagactgtgcttttaattttggaagagatttatatattaatgaccgattatgaagtcgttttgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111567" stop="110431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111267" g_stop="111222" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111221" i_stop="111137" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111136" g_stop="111033" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="150" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110943" g_stop="110723" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="371" r_length="221" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E347606" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111267" e_stop="111222"/>
          <exon e_start="111136" e_stop="111033"/>
          <exon e_start="110943" e_stop="110723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCT</genome_strand>
        <mrna_strand>ATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620928" ref_strand="-" ref_description="SGN-E620928 [71635]">
      <seq>ttcaatcagcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttctcataagtcattcatgattaagaagaagctagcgaagaagcagagacagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtaggcactggcgtagaaccaagctaggattttaaggtggaagaatcgtgttttatttaagttttttatggaaaaacttctcggattatgttttattttctggctcagtaggagctcatttgctgaggaaacagattgtgtttttaatttcggaagagatttatatattaatgactgattatgaagttctgtttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111571" stop="110438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111271" g_stop="111222" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111221" i_stop="111137" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111136" g_stop="111033" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="154" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110943" g_stop="110730" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="365" r_length="211" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E620928" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620928" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111271" e_stop="111222"/>
          <exon e_start="111136" e_stop="111033"/>
          <exon e_start="110943" e_stop="110730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAAT</genome_strand>
        <mrna_strand>TTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCTCATAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGACAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGGCACTGGCGTAGAACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTTATGGAAAAACTTCTCGGATTATGTTTTATTTTCTGGCTCAGTAGGAGCTCATTTGCTGAGGAAACAGATTGTGTTTTTAATTTCGGAAGAGATTTATATATTAATGACTGATTATGAA---GTTCTGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297139" ref_strand="+" ref_description="SGN-E297139 [cLET-29-G9]">
      <seq>agcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttcgcacaagtcattcatgattaagaagaagctagcgaagaagcagaggcagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtagacactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagtttttaatggaaaaacttctcggattatgttttattttcgagttcaataggagctcatttgctgaggaaacagactgtgcttttaattttggaagagatttatatattaatgaccgattatgaagtcgttttgtttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111564" stop="110431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111264" g_stop="111222" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111221" i_stop="111137" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111136" g_stop="111033" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="147" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110943" g_stop="110732" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="359" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="360" polyA_stop="370"/>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E297139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111264" e_stop="111222"/>
          <exon e_start="111136" e_stop="111033"/>
          <exon e_start="110943" e_stop="110732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTA</genome_strand>
        <mrna_strand>AGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612133" ref_strand="-" ref_description="SGN-E612133 [61892]">
      <seq>agtcattcatgattaagaagaagctagcgaagaagcagagacagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtaggcactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagttttttatggaaaaacttctcggattatgttttattttctggctcaataggagcttattcagtgagccaacagattgtgttttttattttggaagagatttatatattaatgactgattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111426" stop="100204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111126" g_stop="111033" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110943" g_stop="110733" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="305" r_length="211" r_score="0.863"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E612133" ref_strand="-">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612133" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111126" e_stop="111033"/>
          <exon e_start="110943" e_stop="110733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTT</genome_strand>
        <mrna_strand>AGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGACAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGGCACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTTATGGAAAAACTTCTCGGATTATGTTTTATTTTCTGGCTCAATAGGAGCTTATTCAGTGAGCCAACAGATTGTGTTTTTTATTTTGGAAGAGATTTATATATTAATGACTGATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609949" ref_strand="-" ref_description="SGN-E609949 [57099]">
      <seq>caaaaatgccttctcacaagtcattcatgattaagaagaagctagcgaagaagcagagacagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtaggcactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagttttttatggataaacttctcggattatgttttattttctggctcaataggagcttattcagtgaggaaacagattgtgtttttaattttggaagagatttatatattaatgactgattatgaagttgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111437" stop="110439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111229" g_stop="111222" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111221" i_stop="111137" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111136" g_stop="111033" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="112" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110943" g_stop="110738" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="318" r_length="206" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E609949" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609949" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111229" e_stop="111222"/>
          <exon e_start="111136" e_stop="111033"/>
          <exon e_start="110943" e_stop="110738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTT</genome_strand>
        <mrna_strand>CAAAAATG.....................................................................................CCTTCTCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGACAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGGCACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTTATGGATAAACTTCTCGGATTATGTTTTATTTTCTGGCTCAATAGGAGCTTATTCAGTGAGGAAACAGATTGTGTTTTTAATTTTGGAAGAGATTTATATATTAATGACTGATTATGAAGTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339402" ref_strand="+" ref_description="SGN-E339402 [cTOF-4-E10]">
      <seq>caacagcaaaaatgccttcgcacaagtcattcatgattaagaagaagctagcgaagaagcagaggcagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtagacactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagtttttaatggaaaaacttctcggattatgttttattttcgagttcaataggagctcatttgctgaggaaacagactgtgcttttaattttggaagagatttatatattaatgaccgattatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111437" stop="110445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111235" g_stop="111222" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111221" i_stop="111137" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111136" g_stop="111033" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="118" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110943" g_stop="110745" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="317" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E339402" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111235" e_stop="111222"/>
          <exon e_start="111136" e_stop="111033"/>
          <exon e_start="110943" e_stop="110745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAA</genome_strand>
        <mrna_strand>CAACAGCAAAAATG.....................................................................................CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595103" ref_strand="-" ref_description="SGN-E595103 [38369]">
      <seq>ttcattcagcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttctcacaagtcattcatgattaagaagaagctagcgaagaagcagagacagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtaggcactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagttttttatggaaaaacttctcggattatgttttattttctggctcaataggagcttattcagtgaggaaacagattgtgttttttattttggaagagatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111571" stop="110465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111271" g_stop="111222" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111221" i_stop="111137" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111136" g_stop="111033" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="154" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110943" g_stop="110765" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="333" r_length="179" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E595103" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595103" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111271" e_stop="111222"/>
          <exon e_start="111136" e_stop="111033"/>
          <exon e_start="110943" e_stop="110765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATA</genome_strand>
        <mrna_strand>TTCATTCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCTCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGACAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGGCACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTTATGGAAAAACTTCTCGGATTATGTTTTATTTTCTGGCTCAATAGGAGCTTATTCAGTGAGGAAACAGATTGTGTTTTTTATTTTGGAAGAGATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721376" ref_strand="+" ref_description="SGN-E721376 [FC13CG11]">
      <seq>gggcgattggcggccaatcggccgaattgctcgagtcatttctctgcagctaaacccctgcggctttaggttccagaaacttcgctcatcgattcaggttaagacgtcactgctagaaatatggccaagcatcatcccgatttgatcatgtgccggaagcagccaggaatagctatcggtcgactttgtgagaaatgtgatgggaagtgtgtgatttgtgattcatacgtccggccttgcacacttgtccgagtttgtgatgaatgcaactatggatcctttcaaggccgttgtgtcatctgtggtggtgttggtatctctgatgcttactattgcaaggagtgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgccaagaccgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgagagggtcggatacctctttcacccttcggtgaagttcactactggaattttgtactagcataattgtgtcaaaattaggcatttgagtatagcctatgtacttactcactatattgccttgcaacttgctgtattacatactgatatcacnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="115351" stop="100202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115051" g_stop="114984" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="97" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114983" i_stop="112518" i_length="2466">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112517" g_stop="112010" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="605" r_length="508" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112009" i_stop="111801" i_length="209">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.55"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111800" g_stop="111752" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="654" r_length="49" r_score="0.551"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E721376" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115051" e_stop="114984"/>
          <exon e_start="112517" e_stop="112010"/>
          <exon e_start="111800" e_stop="111752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAGTCATTTCTCTGCAGCTAAACCCCTGCGGCTTTAGGTTCCAGAAACTTCGCTCATCGATTCAGGTTTGCGTTATATCCTCTTAACATTGTTATTAATTTTTAGTTTAATCATGTTTTTTGTTTGATATTGCGTTTGTTATGTGTTTGAATTTTGCTAATTGTTTAATTTCGTTTTTGTTGAATTTTTGATGTTGTTAATAGTTATTTTGATCGTGTTTTATTTGACATTGAGTAGTAATTTGAACGAATTAGTATCGGTTAAAGTTCTACTGATGTTATTAGCTACTTGAACCGTGTTTTGTTTGGTATTCTGTTTGTTTTGTGTTTGAATTTAGCTAATTATGTAATTACGTTTTTGTTGAATTTTTGCTGTTGTTAATAGCTACTTAAATCATGTTTTGTTTTTATATTGAGGTTGTTTCGGATAGGAATTTGAACGATTAGTATTGGTTAAACTTTACTGTTGTTAGTAGCTACTTTTGTTTGATAATGTGTTTGAATTCAGAAAATCACTGAATTTTTTGTATTGGTAGGATTAGTCTATTTAGTAGTAGGAGATTGTTTTACGAAGGGGGAAATAGTTTTCATTCTTAATATGCTTTGTTATGTTTTTGTGTTGTAAATAAATATTTTTTCTGACTCTTCTTTAGTTTTAGGTTTAGATGTAAGTAATTGAGTTCACAGTATTATACCAATTTGCTTTTGTTGCAGTAGCAGAAATAACTTGATCATGAATTAAGGACATCCCTGTTAACCTCAGTTGTAAAATAGTAAAAGCATTGAAGTTTATATATAGCACTTCAACAAAGAAAGAAAGAAAGATGCTTATTGAGTCATTCACATGACGATCACTGTGTTTGCTAGATGTTGAACTAGAGTGTTTCTTGATAAGTGATAGGAGTAGTAACTTAGTAATGCTTAATGTTTGATTTTTTTTCGTCTTGATAGTTGCACAGTATTGGCTAGTTTGCCCATACCTCGACTATTCCATTGGGAACCAGCCACCTATACACTAGTATAGATATCAGGTAACTCAGCTTACAGAACCTCGATGTATAGGAAGAAATCACCTTTTGTTAGGATCTGAAACCAGTCTTCACTTTATTGAGCAACTTATTTAAGTTCAATGATTGCATACATTTAATAATGATCAAGATCTTCTTAGAAAATATGCAAGCAAAGGGCTCTTATAGCCTGTCCAAGGAAAAAGGAATCGGGCAAGGGGATGTGTTTATAGGTGTTCAAAATTGAGAATATTTAATCAATGAGTCTAGTGCAGTAAGTGTATGGACATCATATCTGTGGACTAGAAGGCAGTAGTTTCATCATTAAAAAGAAAGCGATTCTGAAATTCCGACTGTATGAAATGAGTTGAAGTAGGTTCACAACTCAAAAGCACTCGAAGAACTTGCTTTTCTGCGCCTTTGTGGTATTCTGCTTATATCAGTTTCTGCTTGCAAAATGAGATGTAGGATAGTAAATGTTACCTGTTCCCAAAAAAAAATAAAATGAAATGTAGGATAGTGAAGCTAAGATCTCTGCAAGTTCTTAACTCTGTTTGTTAAGATCGTTCCATAACAAACTATGAAATAATTAGCTGGTTAACCATATCAATTTCTGGTAGTGTTAACATAGATGTCATTGTTACTCTCTCTGTAGAAAATTAGAATCAGAGGTGCATAAAGCTGTTTGTGTTTGCAAAGTGCATAGTGTCACCACTCACCAGCAATTGCATTGCTTTATTGATGAGGATTTCTCTTTGGAAAATCTTTTGTGAGGGTCCAATTCTTTTTCCCCTATTGATCGGTCGAGACAATCTTAAATTTAAGAACCAAAAAGTTGATTGAATATTGCCTACACCTTTTATCTTCCCTGTCACAATTTAAATACAAAAGAAACTCTGTGGAACTGTGGAACTCAATTTTTCCATGGTCCATACCATTGTCCATAATGTTTGACAAATCCTTATAAGGAGAAAAGTACAGGAGCTAAAGGGGTAGGGGATAGAGCGAGTTCATCTCCATCTAGACAGTCCCAAAGCTGATGAATCCAAGTTGTTTTGGAGAACTCTGTAACTGATGCTATTTTCATTCATTTTCCTTATCTGTAGGGCATCACGATTGGTAGCAGGATATGTTGACATTAGGGTGATGATATCTATATTTTTACAGAATTCTGTTCTTTTTGCTTCTTGGCAGACATGAACGGTTTTAGACATTTCTGTAACTGTCTAACTGACGCTATTTCGTTCGTTTTTCTTCTATGTGTTGGGCCTAGCAAATGGTAACATGATATGTTATGATACTAGGGTGATAATATTTGTCTCTTTATGGAACTGGAAAGACGTGATAAAGTTGAACTTACTATTTTATCAATCAGAATAAGTTACTGTATTCTACTTCTTGTCCCATTTATATTTTTTACTATGCTTTCTGCTACAATAAGCATAATCATATAGATCTTAGAAACACATTGTTTTGCCTCGTTTCTGCCGTCTGCTAATTACTCTTCCTTAATTTTCTTTTCCAGGTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAAAATGCCAACGCTAATCGACTTCCGATCTAGTTTCTTTTGGGTGTAATTTGTGAAAATTTTACTTCAGTTAATTTTCTATCATGATGTACACTGTACTCTTGTTCTTTAGTCAGCATGTTGATGGGATTTGTATTAGGAAGTTACAACATACATTAAGAACAGCAGATGACATAAACAGAGAGTTCAATATATCACAAATCCACAAAAAGAAATA</genome_strand>
        <mrna_strand>CTCGAGTCATTTCTCTGCAGCTAAACCCCTGCGGCTTTAGGTTCCAGAAACTTCGCTCATCGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACNN.................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436489" ref_strand="+" ref_description="SGN-E436489 [STM-63-G7]">
      <seq>tggtggtgttggtatttctgatgcttactattgcaaggaatgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgccaagactgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgagagtcggatacctctttcacccttcggtgaagttcactactggagtttcgtactagcatgattgtgtcaaaattaggcatttgagtatagcctatgtaacttactcactatattgccttggaacttgctgtattacatactgatagcataagtttaacccattgtaatttcgttttgtgcaagggtatgcaacaaaacgccaacgctaatcgactcttcaatcttgtctcttttgggtgtgatttgtgaaaattttacttcagtttattttctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112612" stop="111588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112312" g_stop="111876" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E436489" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112312" e_stop="111876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGT-ACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAAAATGCCAACGCTAATCGACT-TCCGATCTAGTTTCTTTTGGGTGTAATTTGTGAAAATTTTACTTCAGTTAATTTTCTATCATGATGTACA</genome_strand>
        <mrna_strand>TGGTGGTGTTGGTATTTCTGATGCTTACTATTGCAAGGAATGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACTGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGA--GTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAGTTTCGTACTAGCATGATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTAACTTACTCACTATATTGCCTTGGAACTTGCTGTATTACATACTGATAGCATAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAAAACGCCAACGCTAATCGACTCTTCAATCTTGTCTCTTTTGGGTGTGATTTGTGAAAATTTTACTTCAGTTTATTTTCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459118" ref_strand="+" ref_description="SGN-E459118 [cPRO-33-K8]">
      <seq>tggtggtgttggtatttctgatgcttactattgcaaggaatgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgccaagactgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgagagtcggatacctctttcacccttcggtgaagttcactactggagtttcgtactagcatgattgtgtcaaaattaggcatttgagtatagcctatgtaacttactcactatattgccttggaacttgctgtattacatactgatagcataagtttaacccattgtaatttcgttttgtgcaagggtatgcaacaaaacgccaacgctaatcgactcttcaatcttgtctcttttgggtgtgatttgtgaaaattttacttcagtttattttctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112612" stop="111588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112312" g_stop="111876" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E459118" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112312" e_stop="111876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGT-ACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAAAATGCCAACGCTAATCGACT-TCCGATCTAGTTTCTTTTGGGTGTAATTTGTGAAAATTTTACTTCAGTTAATTTTCTATCATGATGTACA</genome_strand>
        <mrna_strand>TGGTGGTGTTGGTATTTCTGATGCTTACTATTGCAAGGAATGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACTGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGA--GTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAGTTTCGTACTAGCATGATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTAACTTACTCACTATATTGCCTTGGAACTTGCTGTATTACATACTGATAGCATAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAAAACGCCAACGCTAATCGACTCTTCAATCTTGTCTCTTTTGGGTGTGATTTGTGAAAATTTTACTTCAGTTTATTTTCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436490" ref_strand="+" ref_description="SGN-E436490 [STM-63-G7]">
      <seq>tttttttttttttagaaaataaactgaagtaaaattttcacaaatcacacccaaaagagacaagattgaagagtcgattagcgttggcgttttgttgcatacccttgcacaaaacgaaattacaatgggttaaacttatgctatcagtatgtaatacagcaagttccaaggcaatatagtgagtaagttacataggctatactcaaatgcctaattttgacacaatcatgctagtacgaaactccagtagtgaacttcaccgaagggtgaaagaggtatccgactctcatctcttcttgaaaccatattttttacgttcataaaacagatcagtcttggcactaccaagattgactatctttggacagccatccctatctttctcctgctgagtacattccttgcaatagtaagcatcagaaataccaacaccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111588" stop="112612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111876" g_stop="112312" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-E436490" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111876" e_stop="112312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACATCATGATAGAAAATTAACTGAAGTAAAATTTTCACAAATTACACCCAAAAGAAACTAGATCGGA-AGTCGATTAGCGTTGGCATTTTGTTGCATACCCTTGCACAAAACGAAATTACAATGGGTTAAACTTGTGATATCAGTATGTAATACAGCAAGTTGCAAGGCAATATAGTGAGTAAG-TACATAGGCTATACTCAAATGCCTAATTTTGACACAATTATGCTAGTACAAAATTCCAGTAGTGAACTTCACCGAAGGGTGAAAGAGGTATCCGACCCTCTCATCTCTTCTTGAAACCATATTTTTTACGTTCATAAAACAGATCGGTCTTGGCACTACCAAGATTGACTATCTTTGGACAGCCATCCCTATCTTTCTCCTGCTGAGTACACTCCTTGCAATAGTAAGCATCAGAGATACCAACACCACCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTAGAAAATAAACTGAAGTAAAATTTTCACAAATCACACCCAAAAGAGACAAGATTGAAGAGTCGATTAGCGTTGGCGTTTTGTTGCATACCCTTGCACAAAACGAAATTACAATGGGTTAAACTTATGCTATCAGTATGTAATACAGCAAGTTCCAAGGCAATATAGTGAGTAAGTTACATAGGCTATACTCAAATGCCTAATTTTGACACAATCATGCTAGTACGAAACTCCAGTAGTGAACTTCACCGAAGGGTGAAAGAGGTATCCGA--CTCTCATCTCTTCTTGAAACCATATTTTTTACGTTCATAAAACAGATCAGTCTTGGCACTACCAAGATTGACTATCTTTGGACAGCCATCCCTATCTTTCTCCTGCTGAGTACATTCCTTGCAATAGTAAGCATCAGAAATACCAACACCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604815" ref_strand="+" ref_description="SGN-E604815 [74954]">
      <seq>ttntctctgcagctaaaccccctacgggctttcccgggtcccagaaacttcgctcatcgattcaggttaagacgtcactgctagaaatatggcaagcatcatcctgatttgatcatgtgccggaagcagccaggaatagctatcggtcgactttgtgagaaatgtgatgggaagtgtgtgatttgtgattcatacgtccgtccttgcacacttgtccgagtttgtgatgaatgcaactatggatcctttcaaggccgttgtgtcatctgcggtggtgttggtatttctgatgcttactattgcaaggaatgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgcaaagaccgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgagagtctgatacctctttcacccttcggtgaagttcactactggaattttgtactagcatgattgtgtcaaagttaggcatttgagtataggctatgtaacttactcactatattgccttggaacttgctgtattacatactgatatcacaggtttaaacccattgtaattctcgttttgtgcaagggtttgcaacaggatgccaacgctaaatcgactttcaatcttgtctcttatgggtgtaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="115342" stop="111618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115011" g_stop="114984" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="65" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114983" i_stop="112518" i_length="2466">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112517" g_stop="111918" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="666" r_length="601" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E604815" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115011" e_stop="114984"/>
          <exon e_start="112517" e_stop="111918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCAGAAACTTCGCTCATCGATTCAGGTTTGCGTTATATCCTCTTAACATTGTTATTAATTTTTAGTTTAATCATGTTTTTTGTTTGATATTGCGTTTGTTATGTGTTTGAATTTTGCTAATTGTTTAATTTCGTTTTTGTTGAATTTTTGATGTTGTTAATAGTTATTTTGATCGTGTTTTATTTGACATTGAGTAGTAATTTGAACGAATTAGTATCGGTTAAAGTTCTACTGATGTTATTAGCTACTTGAACCGTGTTTTGTTTGGTATTCTGTTTGTTTTGTGTTTGAATTTAGCTAATTATGTAATTACGTTTTTGTTGAATTTTTGCTGTTGTTAATAGCTACTTAAATCATGTTTTGTTTTTATATTGAGGTTGTTTCGGATAGGAATTTGAACGATTAGTATTGGTTAAACTTTACTGTTGTTAGTAGCTACTTTTGTTTGATAATGTGTTTGAATTCAGAAAATCACTGAATTTTTTGTATTGGTAGGATTAGTCTATTTAGTAGTAGGAGATTGTTTTACGAAGGGGGAAATAGTTTTCATTCTTAATATGCTTTGTTATGTTTTTGTGTTGTAAATAAATATTTTTTCTGACTCTTCTTTAGTTTTAGGTTTAGATGTAAGTAATTGAGTTCACAGTATTATACCAATTTGCTTTTGTTGCAGTAGCAGAAATAACTTGATCATGAATTAAGGACATCCCTGTTAACCTCAGTTGTAAAATAGTAAAAGCATTGAAGTTTATATATAGCACTTCAACAAAGAAAGAAAGAAAGATGCTTATTGAGTCATTCACATGACGATCACTGTGTTTGCTAGATGTTGAACTAGAGTGTTTCTTGATAAGTGATAGGAGTAGTAACTTAGTAATGCTTAATGTTTGATTTTTTTTCGTCTTGATAGTTGCACAGTATTGGCTAGTTTGCCCATACCTCGACTATTCCATTGGGAACCAGCCACCTATACACTAGTATAGATATCAGGTAACTCAGCTTACAGAACCTCGATGTATAGGAAGAAATCACCTTTTGTTAGGATCTGAAACCAGTCTTCACTTTATTGAGCAACTTATTTAAGTTCAATGATTGCATACATTTAATAATGATCAAGATCTTCTTAGAAAATATGCAAGCAAAGGGCTCTTATAGCCTGTCCAAGGAAAAAGGAATCGGGCAAGGGGATGTGTTTATAGGTGTTCAAAATTGAGAATATTTAATCAATGAGTCTAGTGCAGTAAGTGTATGGACATCATATCTGTGGACTAGAAGGCAGTAGTTTCATCATTAAAAAGAAAGCGATTCTGAAATTCCGACTGTATGAAATGAGTTGAAGTAGGTTCACAACTCAAAAGCACTCGAAGAACTTGCTTTTCTGCGCCTTTGTGGTATTCTGCTTATATCAGTTTCTGCTTGCAAAATGAGATGTAGGATAGTAAATGTTACCTGTTCCCAAAAAAAAATAAAATGAAATGTAGGATAGTGAAGCTAAGATCTCTGCAAGTTCTTAACTCTGTTTGTTAAGATCGTTCCATAACAAACTATGAAATAATTAGCTGGTTAACCATATCAATTTCTGGTAGTGTTAACATAGATGTCATTGTTACTCTCTCTGTAGAAAATTAGAATCAGAGGTGCATAAAGCTGTTTGTGTTTGCAAAGTGCATAGTGTCACCACTCACCAGCAATTGCATTGCTTTATTGATGAGGATTTCTCTTTGGAAAATCTTTTGTGAGGGTCCAATTCTTTTTCCCCTATTGATCGGTCGAGACAATCTTAAATTTAAGAACCAAAAAGTTGATTGAATATTGCCTACACCTTTTATCTTCCCTGTCACAATTTAAATACAAAAGAAACTCTGTGGAACTGTGGAACTCAATTTTTCCATGGTCCATACCATTGTCCATAATGTTTGACAAATCCTTATAAGGAGAAAAGTACAGGAGCTAAAGGGGTAGGGGATAGAGCGAGTTCATCTCCATCTAGACAGTCCCAAAGCTGATGAATCCAAGTTGTTTTGGAGAACTCTGTAACTGATGCTATTTTCATTCATTTTCCTTATCTGTAGGGCATCACGATTGGTAGCAGGATATGTTGACATTAGGGTGATGATATCTATATTTTTACAGAATTCTGTTCTTTTTGCTTCTTGGCAGACATGAACGGTTTTAGACATTTCTGTAACTGTCTAACTGACGCTATTTCGTTCGTTTTTCTTCTATGTGTTGGGCCTAGCAAATGGTAACATGATATGTTATGATACTAGGGTGATAATATTTGTCTCTTTATGGAACTGGAAAGACGTGATAAAGTTGAACTTACTATTTTATCAATCAGAATAAGTTACTGTATTCTACTTCTTGTCCCATTTATATTTTTTACTATGCTTTCTGCTACAATAAGCATAATCATATAGATCTTAGAAACACATTGTTTTGCCTCGTTTCTGCCGTCTGCTAATTACTCTTCCTTAATTTTCTTTTCCAGGTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGT-ACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTT-AACCCATTGTAATT-TCGTTTTGTGCAAGGGTATGCAACAAAATGCCAACGCT-AATCGACTTCCGATCTAGTTTCTTTTGGGTGTAATT</genome_strand>
        <mrna_strand>GTCCCAGAAACTTCGCTCATCGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGACGTCACTGCTAGAAATATGG-CAAGCATCATCCTGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGTCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGCGGTGGTGTTGGTATTTCTGATGCTTACTATTGCAAGGAATGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCAAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGA--GTCTGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATGATTGTGTCAAAGTTAGGCATTTGAGTATAGGCTATGTAACTTACTCACTATATTGCCTTGGAACTTGCTGTATTACATACTGATATCACAGGTTTAAACCCATTGTAATTCTCGTTTTGTGCAAGGGTTTGCAACAGGATGCCAACGCTAAATCGACTTTCAATCTTGTCTCTTATGGGTGTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348741" ref_strand="+" ref_description="SGN-E348741 [cTOF-29-I7]">
      <seq>tcttggtagtgccaagaccgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgagagggtcggatacctctttcacccttcggtgaagttcactactggaattttgtactagcataattgtgtcaaaattaggcatttgagtatagcctatgtacttactcactatattgccttgcaacttgctgtattacatactgatatcacaagtttaacccattgtaatttcgttttgtgcaagggtatgcaacaaaatgccaacgctaatcgacttccgatctagtttcttttgggtgtnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112525" stop="111620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112225" g_stop="111924" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="306" polyA_stop="335"/>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E348741" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112225" e_stop="111924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAAAATGCCAACGCTAATCGACTTCCGATCTAGTTTCTTTTGGGT</genome_strand>
        <mrna_strand>TCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAAAATGCCAACGCTAATCGACTTCCGATCTAGTTTCTTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571330" ref_strand="+" ref_description="SGN-E571330 [12604]">
      <seq>ctttcggttccagaaacttcgctcatcgattcaggttaagacgtcactgttagaaatatggccaagcatcatcctgatttgatcatgtgccggaagcagccaggaatagctattggtcgactttgtgagaaatgtgatgggaagtgtgtgatttgtgattcatacgtccgtccttggcacacttgtccgagtttgtgatgaatgcaactatggatcctttcaaggccgttgtgtcatctgtggtggtgttggtatttctgatgcttactattgcaaggaatgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgccaagactgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgaaagtcggatacctctttcacccttcggtgaagttcactactggagtttcgtactagcatgattgtgtcaaaattaggcatttgagtatagcctatgtaacttactcactatattgccttggaacttgctgtattacatactgatatcacagcgtttaacccattgtaatttcgttttgtgcaagggtatgcgcaacagcatgccaacgcttaatcgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="115317" stop="111671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115017" g_stop="114984" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114983" i_stop="112518" i_length="2466">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112517" g_stop="111946" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="610" r_length="576" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E571330" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115017" e_stop="114984"/>
          <exon e_start="112517" e_stop="111946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGGTTCCAGAAACTTCGCTCATCGATTCAGGTTTGCGTTATATCCTCTTAACATTGTTATTAATTTTTAGTTTAATCATGTTTTTTGTTTGATATTGCGTTTGTTATGTGTTTGAATTTTGCTAATTGTTTAATTTCGTTTTTGTTGAATTTTTGATGTTGTTAATAGTTATTTTGATCGTGTTTTATTTGACATTGAGTAGTAATTTGAACGAATTAGTATCGGTTAAAGTTCTACTGATGTTATTAGCTACTTGAACCGTGTTTTGTTTGGTATTCTGTTTGTTTTGTGTTTGAATTTAGCTAATTATGTAATTACGTTTTTGTTGAATTTTTGCTGTTGTTAATAGCTACTTAAATCATGTTTTGTTTTTATATTGAGGTTGTTTCGGATAGGAATTTGAACGATTAGTATTGGTTAAACTTTACTGTTGTTAGTAGCTACTTTTGTTTGATAATGTGTTTGAATTCAGAAAATCACTGAATTTTTTGTATTGGTAGGATTAGTCTATTTAGTAGTAGGAGATTGTTTTACGAAGGGGGAAATAGTTTTCATTCTTAATATGCTTTGTTATGTTTTTGTGTTGTAAATAAATATTTTTTCTGACTCTTCTTTAGTTTTAGGTTTAGATGTAAGTAATTGAGTTCACAGTATTATACCAATTTGCTTTTGTTGCAGTAGCAGAAATAACTTGATCATGAATTAAGGACATCCCTGTTAACCTCAGTTGTAAAATAGTAAAAGCATTGAAGTTTATATATAGCACTTCAACAAAGAAAGAAAGAAAGATGCTTATTGAGTCATTCACATGACGATCACTGTGTTTGCTAGATGTTGAACTAGAGTGTTTCTTGATAAGTGATAGGAGTAGTAACTTAGTAATGCTTAATGTTTGATTTTTTTTCGTCTTGATAGTTGCACAGTATTGGCTAGTTTGCCCATACCTCGACTATTCCATTGGGAACCAGCCACCTATACACTAGTATAGATATCAGGTAACTCAGCTTACAGAACCTCGATGTATAGGAAGAAATCACCTTTTGTTAGGATCTGAAACCAGTCTTCACTTTATTGAGCAACTTATTTAAGTTCAATGATTGCATACATTTAATAATGATCAAGATCTTCTTAGAAAATATGCAAGCAAAGGGCTCTTATAGCCTGTCCAAGGAAAAAGGAATCGGGCAAGGGGATGTGTTTATAGGTGTTCAAAATTGAGAATATTTAATCAATGAGTCTAGTGCAGTAAGTGTATGGACATCATATCTGTGGACTAGAAGGCAGTAGTTTCATCATTAAAAAGAAAGCGATTCTGAAATTCCGACTGTATGAAATGAGTTGAAGTAGGTTCACAACTCAAAAGCACTCGAAGAACTTGCTTTTCTGCGCCTTTGTGGTATTCTGCTTATATCAGTTTCTGCTTGCAAAATGAGATGTAGGATAGTAAATGTTACCTGTTCCCAAAAAAAAATAAAATGAAATGTAGGATAGTGAAGCTAAGATCTCTGCAAGTTCTTAACTCTGTTTGTTAAGATCGTTCCATAACAAACTATGAAATAATTAGCTGGTTAACCATATCAATTTCTGGTAGTGTTAACATAGATGTCATTGTTACTCTCTCTGTAGAAAATTAGAATCAGAGGTGCATAAAGCTGTTTGTGTTTGCAAAGTGCATAGTGTCACCACTCACCAGCAATTGCATTGCTTTATTGATGAGGATTTCTCTTTGGAAAATCTTTTGTGAGGGTCCAATTCTTTTTCCCCTATTGATCGGTCGAGACAATCTTAAATTTAAGAACCAAAAAGTTGATTGAATATTGCCTACACCTTTTATCTTCCCTGTCACAATTTAAATACAAAAGAAACTCTGTGGAACTGTGGAACTCAATTTTTCCATGGTCCATACCATTGTCCATAATGTTTGACAAATCCTTATAAGGAGAAAAGTACAGGAGCTAAAGGGGTAGGGGATAGAGCGAGTTCATCTCCATCTAGACAGTCCCAAAGCTGATGAATCCAAGTTGTTTTGGAGAACTCTGTAACTGATGCTATTTTCATTCATTTTCCTTATCTGTAGGGCATCACGATTGGTAGCAGGATATGTTGACATTAGGGTGATGATATCTATATTTTTACAGAATTCTGTTCTTTTTGCTTCTTGGCAGACATGAACGGTTTTAGACATTTCTGTAACTGTCTAACTGACGCTATTTCGTTCGTTTTTCTTCTATGTGTTGGGCCTAGCAAATGGTAACATGATATGTTATGATACTAGGGTGATAATATTTGTCTCTTTATGGAACTGGAAAGACGTGATAAAGTTGAACTTACTATTTTATCAATCAGAATAAGTTACTGTATTCTACTTCTTGTCCCATTTATATTTTTTACTATGCTTTCTGCTACAATAAGCATAATCATATAGATCTTAGAAACACATTGTTTTGCCTCGTTTCTGCCGTCTGCTAATTACTCTTCCTTAATTTTCTTTTCCAGGTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTT-GCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGT-ACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACA-AGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTAT--GCAACAAAATGCCAACGC-TAATCGACT</genome_strand>
        <mrna_strand>CTTTCGGTTCCAGAAACTTCGCTCATCGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGACGTCACTGTTAGAAATATGGCCAAGCATCATCCTGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATTGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGTCCTTGGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATTTCTGATGCTTACTATTGCAAGGAATGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACTGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGA-A-AGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAGTTTCGTACTAGCATGATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTAACTTACTCACTATATTGCCTTGGAACTTGCTGTATTACATACTGATATCACAGCGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCGCAACAGCATGCCAACGCTTAATCGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567261" ref_strand="+" ref_description="SGN-E567261 [11358]">
      <seq>ctttcggttccagaaacttcgctcatcgattcaggttaagacgtcactgttagaaatatggccaagcatcatcctgatttgatcatgtgccggaagcagccaggaatagctattggtcgactttgtgagaaatgtgatgggaagtgtgtgatttgtgattcatacgtccgtccttggcacacttgtccgagtttgtgatgaatgcaactatggatcctttcaaggccgttgtgtcatctgtggtggtgttggtatttctgatgcttactattgcaaggaatgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgccaagactgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgaaagtcggatacctctttcacccttcggtgaagttcactactggagtttcgtactagcatgattgtgtccaacattaggcatttgagtatagcctatgtaacttactcactatattgcctttggaacttgcttgtattaacatactgatatcacaggtttaacccattgtaatttcgtttttgtgcaagggtatgcgcaacagcatgccaacgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="115317" stop="111671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115017" g_stop="114984" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114983" i_stop="112518" i_length="2466">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112517" g_stop="111952" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="607" r_length="573" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E567261" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115017" e_stop="114984"/>
          <exon e_start="112517" e_stop="111952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGGTTCCAGAAACTTCGCTCATCGATTCAGGTTTGCGTTATATCCTCTTAACATTGTTATTAATTTTTAGTTTAATCATGTTTTTTGTTTGATATTGCGTTTGTTATGTGTTTGAATTTTGCTAATTGTTTAATTTCGTTTTTGTTGAATTTTTGATGTTGTTAATAGTTATTTTGATCGTGTTTTATTTGACATTGAGTAGTAATTTGAACGAATTAGTATCGGTTAAAGTTCTACTGATGTTATTAGCTACTTGAACCGTGTTTTGTTTGGTATTCTGTTTGTTTTGTGTTTGAATTTAGCTAATTATGTAATTACGTTTTTGTTGAATTTTTGCTGTTGTTAATAGCTACTTAAATCATGTTTTGTTTTTATATTGAGGTTGTTTCGGATAGGAATTTGAACGATTAGTATTGGTTAAACTTTACTGTTGTTAGTAGCTACTTTTGTTTGATAATGTGTTTGAATTCAGAAAATCACTGAATTTTTTGTATTGGTAGGATTAGTCTATTTAGTAGTAGGAGATTGTTTTACGAAGGGGGAAATAGTTTTCATTCTTAATATGCTTTGTTATGTTTTTGTGTTGTAAATAAATATTTTTTCTGACTCTTCTTTAGTTTTAGGTTTAGATGTAAGTAATTGAGTTCACAGTATTATACCAATTTGCTTTTGTTGCAGTAGCAGAAATAACTTGATCATGAATTAAGGACATCCCTGTTAACCTCAGTTGTAAAATAGTAAAAGCATTGAAGTTTATATATAGCACTTCAACAAAGAAAGAAAGAAAGATGCTTATTGAGTCATTCACATGACGATCACTGTGTTTGCTAGATGTTGAACTAGAGTGTTTCTTGATAAGTGATAGGAGTAGTAACTTAGTAATGCTTAATGTTTGATTTTTTTTCGTCTTGATAGTTGCACAGTATTGGCTAGTTTGCCCATACCTCGACTATTCCATTGGGAACCAGCCACCTATACACTAGTATAGATATCAGGTAACTCAGCTTACAGAACCTCGATGTATAGGAAGAAATCACCTTTTGTTAGGATCTGAAACCAGTCTTCACTTTATTGAGCAACTTATTTAAGTTCAATGATTGCATACATTTAATAATGATCAAGATCTTCTTAGAAAATATGCAAGCAAAGGGCTCTTATAGCCTGTCCAAGGAAAAAGGAATCGGGCAAGGGGATGTGTTTATAGGTGTTCAAAATTGAGAATATTTAATCAATGAGTCTAGTGCAGTAAGTGTATGGACATCATATCTGTGGACTAGAAGGCAGTAGTTTCATCATTAAAAAGAAAGCGATTCTGAAATTCCGACTGTATGAAATGAGTTGAAGTAGGTTCACAACTCAAAAGCACTCGAAGAACTTGCTTTTCTGCGCCTTTGTGGTATTCTGCTTATATCAGTTTCTGCTTGCAAAATGAGATGTAGGATAGTAAATGTTACCTGTTCCCAAAAAAAAATAAAATGAAATGTAGGATAGTGAAGCTAAGATCTCTGCAAGTTCTTAACTCTGTTTGTTAAGATCGTTCCATAACAAACTATGAAATAATTAGCTGGTTAACCATATCAATTTCTGGTAGTGTTAACATAGATGTCATTGTTACTCTCTCTGTAGAAAATTAGAATCAGAGGTGCATAAAGCTGTTTGTGTTTGCAAAGTGCATAGTGTCACCACTCACCAGCAATTGCATTGCTTTATTGATGAGGATTTCTCTTTGGAAAATCTTTTGTGAGGGTCCAATTCTTTTTCCCCTATTGATCGGTCGAGACAATCTTAAATTTAAGAACCAAAAAGTTGATTGAATATTGCCTACACCTTTTATCTTCCCTGTCACAATTTAAATACAAAAGAAACTCTGTGGAACTGTGGAACTCAATTTTTCCATGGTCCATACCATTGTCCATAATGTTTGACAAATCCTTATAAGGAGAAAAGTACAGGAGCTAAAGGGGTAGGGGATAGAGCGAGTTCATCTCCATCTAGACAGTCCCAAAGCTGATGAATCCAAGTTGTTTTGGAGAACTCTGTAACTGATGCTATTTTCATTCATTTTCCTTATCTGTAGGGCATCACGATTGGTAGCAGGATATGTTGACATTAGGGTGATGATATCTATATTTTTACAGAATTCTGTTCTTTTTGCTTCTTGGCAGACATGAACGGTTTTAGACATTTCTGTAACTGTCTAACTGACGCTATTTCGTTCGTTTTTCTTCTATGTGTTGGGCCTAGCAAATGGTAACATGATATGTTATGATACTAGGGTGATAATATTTGTCTCTTTATGGAACTGGAAAGACGTGATAAAGTTGAACTTACTATTTTATCAATCAGAATAAGTTACTGTATTCTACTTCTTGTCCCATTTATATTTTTTACTATGCTTTCTGCTACAATAAGCATAATCATATAGATCTTAGAAACACATTGTTTTGCCTCGTTTCTGCCGTCTGCTAATTACTCTTCCTTAATTTTCTTTTCCAGGTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTT-GCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGT-CAAAATTAGGCATTTGAGTATAGCCTATGT-ACTTACTCACTATATTGCC-TTGCAACTTGC-TGTATT-ACATACTGATATCACAAGTTTAACCCATTGTAATTTCG-TTTTGTGCAAGGGTAT--GCAACAAAATGCCAACGCTAA</genome_strand>
        <mrna_strand>CTTTCGGTTCCAGAAACTTCGCTCATCGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGACGTCACTGTTAGAAATATGGCCAAGCATCATCCTGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATTGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGTCCTTGGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATTTCTGATGCTTACTATTGCAAGGAATGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACTGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGA-A-AGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAGTTTCGTACTAGCATGATTGTGTCCAACATTAGGCATTTGAGTATAGCCTATGTAACTTACTCACTATATTGCCTTTGGAACTTGCTTGTATTAACATACTGATATCACAGGTTTAACCCATTGTAATTTCGTTTTTGTGCAAGGGTATGCGCAACAGCATGCCAACGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561969" ref_strand="+" ref_description="SGN-E561969 [20769]">
      <seq>atgtgatgggaagtgtgtgatttgtgattcatacgtccgtccttgcacacttgtccgagtttgtgatgaatgcaactatggatcctttcaaggccgttgtgtcatctgcggtggtgttggtatttctgatgcttactattgcaaggaatgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgcaaagaccgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgagagtctgatacctctttcacccttcggtgaagttcactactggaattttgtactagcatgattgtgtcaaagttaggcatttgagtataggctatgtaacttactcactatattgccttggaacttgctgtattacatactgatatcacaggtttaacccattgtaatttcgttttgtgcaagggtttgcaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112720" stop="111667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112420" g_stop="111966" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E561969" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112420" e_stop="111966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGT-ACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAA</genome_strand>
        <mrna_strand>ATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGTCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGCGGTGGTGTTGGTATTTCTGATGCTTACTATTGCAAGGAATGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCAAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGA--GTCTGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATGATTGTGTCAAAGTTAGGCATTTGAGTATAGGCTATGTAACTTACTCACTATATTGCCTTGGAACTTGCTGTATTACATACTGATATCACAGGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTTTGCAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353012" ref_strand="+" ref_description="SGN-E353012 [cTOS-14-K2]">
      <seq>gtcatttctctgcagctaaacccctgcggctttaggttccagaaacttcgctcatcgattcaggttaagacgtcactgctagaaatatggccaagcatcatcccgatttgatcatgtgccggaagcagccaggaatagctatcggtcgactttgtgagaaatgtgatgggaagtgtgtgatttgtgattcatacgtccggccttgcacacttgtccgagtttgtgatgaatgcaactatggatcctttcaaggccgttgtgtcatctgtggtggtgttggtatctctgatgcttactattgcaaggagtgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgccaagaccgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgagagggtcggatacctctttcacccttcggtgaagttcactactggaattttgtactagcataattgtgtcaaaattaggcatttgagtatagcctatgtacttactcactatattgccttgcaacttgctgtattacatactgatatcacaangttaacccatttgtatttcgtttttgtgcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="115346" stop="111679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115046" g_stop="114984" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114983" i_stop="112518" i_length="2466">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112517" g_stop="111977" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="605" r_length="542" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E353012" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115046" e_stop="114984"/>
          <exon e_start="112517" e_stop="111977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTTCTCTGCAGCTAAACCCCTGCGGCTTTAGGTTCCAGAAACTTCGCTCATCGATTCAGGTTTGCGTTATATCCTCTTAACATTGTTATTAATTTTTAGTTTAATCATGTTTTTTGTTTGATATTGCGTTTGTTATGTGTTTGAATTTTGCTAATTGTTTAATTTCGTTTTTGTTGAATTTTTGATGTTGTTAATAGTTATTTTGATCGTGTTTTATTTGACATTGAGTAGTAATTTGAACGAATTAGTATCGGTTAAAGTTCTACTGATGTTATTAGCTACTTGAACCGTGTTTTGTTTGGTATTCTGTTTGTTTTGTGTTTGAATTTAGCTAATTATGTAATTACGTTTTTGTTGAATTTTTGCTGTTGTTAATAGCTACTTAAATCATGTTTTGTTTTTATATTGAGGTTGTTTCGGATAGGAATTTGAACGATTAGTATTGGTTAAACTTTACTGTTGTTAGTAGCTACTTTTGTTTGATAATGTGTTTGAATTCAGAAAATCACTGAATTTTTTGTATTGGTAGGATTAGTCTATTTAGTAGTAGGAGATTGTTTTACGAAGGGGGAAATAGTTTTCATTCTTAATATGCTTTGTTATGTTTTTGTGTTGTAAATAAATATTTTTTCTGACTCTTCTTTAGTTTTAGGTTTAGATGTAAGTAATTGAGTTCACAGTATTATACCAATTTGCTTTTGTTGCAGTAGCAGAAATAACTTGATCATGAATTAAGGACATCCCTGTTAACCTCAGTTGTAAAATAGTAAAAGCATTGAAGTTTATATATAGCACTTCAACAAAGAAAGAAAGAAAGATGCTTATTGAGTCATTCACATGACGATCACTGTGTTTGCTAGATGTTGAACTAGAGTGTTTCTTGATAAGTGATAGGAGTAGTAACTTAGTAATGCTTAATGTTTGATTTTTTTTCGTCTTGATAGTTGCACAGTATTGGCTAGTTTGCCCATACCTCGACTATTCCATTGGGAACCAGCCACCTATACACTAGTATAGATATCAGGTAACTCAGCTTACAGAACCTCGATGTATAGGAAGAAATCACCTTTTGTTAGGATCTGAAACCAGTCTTCACTTTATTGAGCAACTTATTTAAGTTCAATGATTGCATACATTTAATAATGATCAAGATCTTCTTAGAAAATATGCAAGCAAAGGGCTCTTATAGCCTGTCCAAGGAAAAAGGAATCGGGCAAGGGGATGTGTTTATAGGTGTTCAAAATTGAGAATATTTAATCAATGAGTCTAGTGCAGTAAGTGTATGGACATCATATCTGTGGACTAGAAGGCAGTAGTTTCATCATTAAAAAGAAAGCGATTCTGAAATTCCGACTGTATGAAATGAGTTGAAGTAGGTTCACAACTCAAAAGCACTCGAAGAACTTGCTTTTCTGCGCCTTTGTGGTATTCTGCTTATATCAGTTTCTGCTTGCAAAATGAGATGTAGGATAGTAAATGTTACCTGTTCCCAAAAAAAAATAAAATGAAATGTAGGATAGTGAAGCTAAGATCTCTGCAAGTTCTTAACTCTGTTTGTTAAGATCGTTCCATAACAAACTATGAAATAATTAGCTGGTTAACCATATCAATTTCTGGTAGTGTTAACATAGATGTCATTGTTACTCTCTCTGTAGAAAATTAGAATCAGAGGTGCATAAAGCTGTTTGTGTTTGCAAAGTGCATAGTGTCACCACTCACCAGCAATTGCATTGCTTTATTGATGAGGATTTCTCTTTGGAAAATCTTTTGTGAGGGTCCAATTCTTTTTCCCCTATTGATCGGTCGAGACAATCTTAAATTTAAGAACCAAAAAGTTGATTGAATATTGCCTACACCTTTTATCTTCCCTGTCACAATTTAAATACAAAAGAAACTCTGTGGAACTGTGGAACTCAATTTTTCCATGGTCCATACCATTGTCCATAATGTTTGACAAATCCTTATAAGGAGAAAAGTACAGGAGCTAAAGGGGTAGGGGATAGAGCGAGTTCATCTCCATCTAGACAGTCCCAAAGCTGATGAATCCAAGTTGTTTTGGAGAACTCTGTAACTGATGCTATTTTCATTCATTTTCCTTATCTGTAGGGCATCACGATTGGTAGCAGGATATGTTGACATTAGGGTGATGATATCTATATTTTTACAGAATTCTGTTCTTTTTGCTTCTTGGCAGACATGAACGGTTTTAGACATTTCTGTAACTGTCTAACTGACGCTATTTCGTTCGTTTTTCTTCTATGTGTTGGGCCTAGCAAATGGTAACATGATATGTTATGATACTAGGGTGATAATATTTGTCTCTTTATGGAACTGGAAAGACGTGATAAAGTTGAACTTACTATTTTATCAATCAGAATAAGTTACTGTATTCTACTTCTTGTCCCATTTATATTTTTTACTATGCTTTCTGCTACAATAAGCATAATCATATAGATCTTAGAAACACATTGTTTTGCCTCGTTTCTGCCGTCTGCTAATTACTCTTCCTTAATTTTCTTTTCCAGGTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTTAACCCATTGTAATTTCG-TTTTGTGCAAGG</genome_strand>
        <mrna_strand>GTCATTTCTCTGCAGCTAAACCCCTGCGGCTTTAGGTTCCAGAAACTTCGCTCATCGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAANGTTAACCCATTTGTATTTCGTTTTTGTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609101" ref_strand="+" ref_description="SGN-E609101 [25102]">
      <seq>gctcatcgattcaggttaagacgtcactgctagaaatatggccaagcatcatcctgatttgatcatgtgccggaagcagccaggaatagctatcggtcgactttgtgagaaatgtgatgggaagtgtgtgatttgtgattcatacgtccgtccttgcattcttgtccgagtctgtgatgaatgcaactatggatcctttcaaggccgttgtgtcatctgtggtggtgttggtatttctgatgcttactattgcaaggaatgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgccaagactgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgagagtcggatacctctttcacctcttcggtgaagttcactactggagtttcgtactagcatgattgtgtcaaaattaggcatttgagtatagcctatgtaacttactcactatattgccttggaacttgctgtattacatactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="112827" stop="111718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112517" g_stop="112018" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="514" r_length="500" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E609101" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112517" e_stop="112018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACC-CTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGT-ACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGA</genome_strand>
        <mrna_strand>GTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCTGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGTCCTTGCATTCTTGTCCGAGTCTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATTTCTGATGCTTACTATTGCAAGGAATGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACTGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGA--GTCGGATACCTCTTTCACCTCTTCGGTGAAGTTCACTACTGGAGTTTCGTACTAGCATGATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTAACTTACTCACTATATTGCCTTGGAACTTGCTGTATTACATACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254001" ref_strand="+" ref_description="SGN-E254001 [cLEG-34-I17]">
      <seq>cagaaacttcgctcatcgattcaggttaagacgtcactgctagaaatatggccaagcatcatcccgatttgatcatgtgccggaagcagccaggaatagctatcggtcgactttgtgagaaatgtgatgggaagtgtgtgatttgtgattcatacgtccggccttgcacacttgtccgagtttgtgatgaatgcaactatggatcctttcaaggccgttgtgtcatctgtggtggtgttggtatctctgatgcttactattgcaaggagtgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgccaagaccgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgagagggtcggatacctctttcacccttcggtgaagttcactactggaattttgtactagcataattgtgtcaaaattaggcatttgagtatagcctatgtacttactcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="115307" stop="111751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115007" g_stop="114984" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114983" i_stop="112518" i_length="2466">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112517" g_stop="112051" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="491" r_length="467" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E254001" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115007" e_stop="114984"/>
          <exon e_start="112517" e_stop="112051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACTTCGCTCATCGATTCAGGTTTGCGTTATATCCTCTTAACATTGTTATTAATTTTTAGTTTAATCATGTTTTTTGTTTGATATTGCGTTTGTTATGTGTTTGAATTTTGCTAATTGTTTAATTTCGTTTTTGTTGAATTTTTGATGTTGTTAATAGTTATTTTGATCGTGTTTTATTTGACATTGAGTAGTAATTTGAACGAATTAGTATCGGTTAAAGTTCTACTGATGTTATTAGCTACTTGAACCGTGTTTTGTTTGGTATTCTGTTTGTTTTGTGTTTGAATTTAGCTAATTATGTAATTACGTTTTTGTTGAATTTTTGCTGTTGTTAATAGCTACTTAAATCATGTTTTGTTTTTATATTGAGGTTGTTTCGGATAGGAATTTGAACGATTAGTATTGGTTAAACTTTACTGTTGTTAGTAGCTACTTTTGTTTGATAATGTGTTTGAATTCAGAAAATCACTGAATTTTTTGTATTGGTAGGATTAGTCTATTTAGTAGTAGGAGATTGTTTTACGAAGGGGGAAATAGTTTTCATTCTTAATATGCTTTGTTATGTTTTTGTGTTGTAAATAAATATTTTTTCTGACTCTTCTTTAGTTTTAGGTTTAGATGTAAGTAATTGAGTTCACAGTATTATACCAATTTGCTTTTGTTGCAGTAGCAGAAATAACTTGATCATGAATTAAGGACATCCCTGTTAACCTCAGTTGTAAAATAGTAAAAGCATTGAAGTTTATATATAGCACTTCAACAAAGAAAGAAAGAAAGATGCTTATTGAGTCATTCACATGACGATCACTGTGTTTGCTAGATGTTGAACTAGAGTGTTTCTTGATAAGTGATAGGAGTAGTAACTTAGTAATGCTTAATGTTTGATTTTTTTTCGTCTTGATAGTTGCACAGTATTGGCTAGTTTGCCCATACCTCGACTATTCCATTGGGAACCAGCCACCTATACACTAGTATAGATATCAGGTAACTCAGCTTACAGAACCTCGATGTATAGGAAGAAATCACCTTTTGTTAGGATCTGAAACCAGTCTTCACTTTATTGAGCAACTTATTTAAGTTCAATGATTGCATACATTTAATAATGATCAAGATCTTCTTAGAAAATATGCAAGCAAAGGGCTCTTATAGCCTGTCCAAGGAAAAAGGAATCGGGCAAGGGGATGTGTTTATAGGTGTTCAAAATTGAGAATATTTAATCAATGAGTCTAGTGCAGTAAGTGTATGGACATCATATCTGTGGACTAGAAGGCAGTAGTTTCATCATTAAAAAGAAAGCGATTCTGAAATTCCGACTGTATGAAATGAGTTGAAGTAGGTTCACAACTCAAAAGCACTCGAAGAACTTGCTTTTCTGCGCCTTTGTGGTATTCTGCTTATATCAGTTTCTGCTTGCAAAATGAGATGTAGGATAGTAAATGTTACCTGTTCCCAAAAAAAAATAAAATGAAATGTAGGATAGTGAAGCTAAGATCTCTGCAAGTTCTTAACTCTGTTTGTTAAGATCGTTCCATAACAAACTATGAAATAATTAGCTGGTTAACCATATCAATTTCTGGTAGTGTTAACATAGATGTCATTGTTACTCTCTCTGTAGAAAATTAGAATCAGAGGTGCATAAAGCTGTTTGTGTTTGCAAAGTGCATAGTGTCACCACTCACCAGCAATTGCATTGCTTTATTGATGAGGATTTCTCTTTGGAAAATCTTTTGTGAGGGTCCAATTCTTTTTCCCCTATTGATCGGTCGAGACAATCTTAAATTTAAGAACCAAAAAGTTGATTGAATATTGCCTACACCTTTTATCTTCCCTGTCACAATTTAAATACAAAAGAAACTCTGTGGAACTGTGGAACTCAATTTTTCCATGGTCCATACCATTGTCCATAATGTTTGACAAATCCTTATAAGGAGAAAAGTACAGGAGCTAAAGGGGTAGGGGATAGAGCGAGTTCATCTCCATCTAGACAGTCCCAAAGCTGATGAATCCAAGTTGTTTTGGAGAACTCTGTAACTGATGCTATTTTCATTCATTTTCCTTATCTGTAGGGCATCACGATTGGTAGCAGGATATGTTGACATTAGGGTGATGATATCTATATTTTTACAGAATTCTGTTCTTTTTGCTTCTTGGCAGACATGAACGGTTTTAGACATTTCTGTAACTGTCTAACTGACGCTATTTCGTTCGTTTTTCTTCTATGTGTTGGGCCTAGCAAATGGTAACATGATATGTTATGATACTAGGGTGATAATATTTGTCTCTTTATGGAACTGGAAAGACGTGATAAAGTTGAACTTACTATTTTATCAATCAGAATAAGTTACTGTATTCTACTTCTTGTCCCATTTATATTTTTTACTATGCTTTCTGCTACAATAAGCATAATCATATAGATCTTAGAAACACATTGTTTTGCCTCGTTTCTGCCGTCTGCTAATTACTCTTCCTTAATTTTCTTTTCCAGGTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTA</genome_strand>
        <mrna_strand>CAGAAACTTCGCTCATCGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568035" ref_strand="+" ref_description="SGN-E568035 [12254]">
      <seq>ctttcggttccagaaacttcgctcatcgattcaggttaagacgtcactgttagaaatatggccaagcatcatcctgatttgatcatgtgccggaagcagccaggaatagctattggtcgactttgtgagaaatgtgatgggaagtgtgtgatttgtgattcatacgtccgtccttgcacacttgtccgagtttgtgatgaatgcaactatggatcctttcaaggccgttgtgtcatctgtggtggtgttggtatttctgatgcttactattgcaaggaatgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgccaagactgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgaaagtcggatacctctttcacccttcggtgaagttcactactggagttccgtactagcgtgattgtgtcaaaattagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-1YVmd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="115317" stop="111783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115017" g_stop="114984" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114983" i_stop="112518" i_length="2466">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112517" g_stop="112083" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="467" r_length="433" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-E568035" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115017" e_stop="114984"/>
          <exon e_start="112517" e_stop="112083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGGTTCCAGAAACTTCGCTCATCGATTCAGGTTTGCGTTATATCCTCTTAACATTGTTATTAATTTTTAGTTTAATCATGTTTTTTGTTTGATATTGCGTTTGTTATGTGTTTGAATTTTGCTAATTGTTTAATTTCGTTTTTGTTGAATTTTTGATGTTGTTAATAGTTATTTTGATCGTGTTTTATTTGACATTGAGTAGTAATTTGAACGAATTAGTATCGGTTAAAGTTCTACTGATGTTATTAGCTACTTGAACCGTGTTTTGTTTGGTATTCTGTTTGTTTTGTGTTTGAATTTAGCTAATTATGTAATTACGTTTTTGTTGAATTTTTGCTGTTGTTAATAGCTACTTAAATCATGTTTTGTTTTTATATTGAGGTTGTTTCGGATAGGAATTTGAACGATTAGTATTGGTTAAACTTTACTGTTGTTAGTAGCTACTTTTGTTTGATAATGTGTTTGAATTCAGAAAATCACTGAATTTTTTGTATTGGTAGGATTAGTCTATTTAGTAGTAGGAGATTGTTTTACGAAGGGGGAAATAGTTTTCATTCTTAATATGCTTTGTTATGTTTTTGTGTTGTAAATAAATATTTTTTCTGACTCTTCTTTAGTTTTAGGTTTAGATGTAAGTAATTGAGTTCACAGTATTATACCAATTTGCTTTTGTTGCAGTAGCAGAAATAACTTGATCATGAATTAAGGACATCCCTGTTAACCTCAGTTGTAAAATAGTAAAAGCATTGAAGTTTATATATAGCACTTCAACAAAGAAAGAAAGAAAGATGCTTATTGAGTCATTCACATGACGATCACTGTGTTTGCTAGATGTTGAACTAGAGTGTTTCTTGATAAGTGATAGGAGTAGTAACTTAGTAATGCTTAATGTTTGATTTTTTTTCGTCTTGATAGTTGCACAGTATTGGCTAGTTTGCCCATACCTCGACTATTCCATTGGGAACCAGCCACCTATACACTAGTATAGATATCAGGTAACTCAGCTTACAGAACCTCGATGTATAGGAAGAAATCACCTTTTGTTAGGATCTGAAACCAGTCTTCACTTTATTGAGCAACTTATTTAAGTTCAATGATTGCATACATTTAATAATGATCAAGATCTTCTTAGAAAATATGCAAGCAAAGGGCTCTTATAGCCTGTCCAAGGAAAAAGGAATCGGGCAAGGGGATGTGTTTATAGGTGTTCAAAATTGAGAATATTTAATCAATGAGTCTAGTGCAGTAAGTGTATGGACATCATATCTGTGGACTAGAAGGCAGTAGTTTCATCATTAAAAAGAAAGCGATTCTGAAATTCCGACTGTATGAAATGAGTTGAAGTAGGTTCACAACTCAAAAGCACTCGAAGAACTTGCTTTTCTGCGCCTTTGTGGTATTCTGCTTATATCAGTTTCTGCTTGCAAAATGAGATGTAGGATAGTAAATGTTACCTGTTCCCAAAAAAAAATAAAATGAAATGTAGGATAGTGAAGCTAAGATCTCTGCAAGTTCTTAACTCTGTTTGTTAAGATCGTTCCATAACAAACTATGAAATAATTAGCTGGTTAACCATATCAATTTCTGGTAGTGTTAACATAGATGTCATTGTTACTCTCTCTGTAGAAAATTAGAATCAGAGGTGCATAAAGCTGTTTGTGTTTGCAAAGTGCATAGTGTCACCACTCACCAGCAATTGCATTGCTTTATTGATGAGGATTTCTCTTTGGAAAATCTTTTGTGAGGGTCCAATTCTTTTTCCCCTATTGATCGGTCGAGACAATCTTAAATTTAAGAACCAAAAAGTTGATTGAATATTGCCTACACCTTTTATCTTCCCTGTCACAATTTAAATACAAAAGAAACTCTGTGGAACTGTGGAACTCAATTTTTCCATGGTCCATACCATTGTCCATAATGTTTGACAAATCCTTATAAGGAGAAAAGTACAGGAGCTAAAGGGGTAGGGGATAGAGCGAGTTCATCTCCATCTAGACAGTCCCAAAGCTGATGAATCCAAGTTGTTTTGGAGAACTCTGTAACTGATGCTATTTTCATTCATTTTCCTTATCTGTAGGGCATCACGATTGGTAGCAGGATATGTTGACATTAGGGTGATGATATCTATATTTTTACAGAATTCTGTTCTTTTTGCTTCTTGGCAGACATGAACGGTTTTAGACATTTCTGTAACTGTCTAACTGACGCTATTTCGTTCGTTTTTCTTCTATGTGTTGGGCCTAGCAAATGGTAACATGATATGTTATGATACTAGGGTGATAATATTTGTCTCTTTATGGAACTGGAAAGACGTGATAAAGTTGAACTTACTATTTTATCAATCAGAATAAGTTACTGTATTCTACTTCTTGTCCCATTTATATTTTTTACTATGCTTTCTGCTACAATAAGCATAATCATATAGATCTTAGAAACACATTGTTTTGCCTCGTTTCTGCCGTCTGCTAATTACTCTTCCTTAATTTTCTTTTCCAGGTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGG</genome_strand>
        <mrna_strand>CTTTCGGTTCCAGAAACTTCGCTCATCGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGACGTCACTGTTAGAAATATGGCCAAGCATCATCCTGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATTGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGTCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATTTCTGATGCTTACTATTGCAAGGAATGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACTGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGA-A-AGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAGTTCCGTACTAGCGTGATTGTGTCAAAATTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>113</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10525" PGL_stop="743"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10525" e_stop="10072"/>
            <exon e_start="9571" e_stop="9501"/>
            <exon e_start="8390" e_stop="8353"/>
            <exon e_start="8254" e_stop="8144"/>
            <exon e_start="4887" e_stop="4788"/>
            <exon e_start="795" e_stop="743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.916" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="10525" e_stop="10072" e_length="454"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.916">
            <gDNA_intron_boundary i_start="10071" i_stop="9572" i_length="500"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9571" e_stop="9501" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9500" i_stop="8391" i_length="1110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8390" e_stop="8353" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.983">
            <gDNA_intron_boundary i_start="8352" i_stop="8255" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8254" e_stop="8144" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.902" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8143" i_stop="4888" i_length="3256"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4887" e_stop="4788" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="4787" i_stop="796" i_length="3992"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="795" e_stop="743" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10525" stop="10072"/>
              <exon start="9571" stop="9501"/>
              <exon start="8390" stop="8353"/>
              <exon start="8254" stop="8144"/>
              <exon start="4887" stop="4832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10506" stop="10072"/>
              <exon start="9571" stop="9501"/>
              <exon start="8390" stop="8353"/>
              <exon start="8254" stop="8144"/>
              <exon start="4887" stop="4788"/>
              <exon start="795" stop="743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAAACACTCTCCCGCTGTCTTCGGAAAACACTTCCACCTCACTTCACCGCTGCCGCCGTCGCCACCGTCACCGCCACCGCCACCGCCACCGCCACCGCTGTTGTAGATCGACGGCGTCCAATCACAGCCTCGAACGAGGACATTTCATTCTCTCCACAATCTCTCATGGCCGGAATTGTTACCCCTCATGTCTCTTCACAATCCGCCATCGTTCACATCAATGGCAAAAACACATTTCTCTCGCCCCAAAAAACCCTAGATTTTCCAATTCTCTCCGGCTCCGGAGGCTCGTTTCTCCGAATGAGAAGCACAAAGCGGCTCGAGGTGAAGCCGCTTGCTGTATCGCAGAACAGTTCAGCTACTTGTGTTGAGTTATCGGATGATGTTAAACGGAATAAGAGTCCGATTATTGTTATTGATAATTATGATAGCTTCACTTATAATCTCTGTCAG : TATATGGGAGAGCTTGGATGCAGTTTTGAGGTTTATCGAAACGACGAGCTCACTGTGGATGAGCTGAAGAA : GAAAAATCCAAGGGGAATACTAATATCACCTGGACCAG : GTACACCTCAAGATTCAGGCATATCATTGCAAACTGTACTGGAACTTGGACCAACAATTCCGTTATTTGGTGTTTGTATGGGTTTGCAATGCATGGGAGAGGCTTTTGGAG : GAAAAATTGTGCGATCTCCATATGGGGTGATGCACGGGAAAAGCTCCCCTGTATATTATAACGAAGGCGGGGAAGATGGTTTATTTGCAGGGCTATCAAA : CCCATTCACAGCTGGTAGATACCACAGCCTGGTAATAGACAAGGACACTTTCC</gDNA_template>
            <first_frame> I  N  T  L  P  L  S  S  E  N  T  S  T  S  L  H  R  C  R  R  R  H  R  H  R  H  R  H  R  H  R  H  R  C  C  R  S  T  A  S  N  H  S  L  E  R  G  H  F  I  L  S  T  I  S  H  G  R  N  C  Y  P  S  C  L  F  T  I  R  H  R  S  H  Q  W  Q  K  H  I  S  L  A  P  K  N  P  R  F  S  N  S  L  R  L  R  R  L  V  S  P  N  E  K  H  K  A  A  R  G  E  A  A  C  C  I  A  E  Q  F  S  Y  L  C  *  V  I  G  *  C  *  T  E  *  E  S  D  Y  C  Y  *  *  L  *  *  L  H  L  *  S  L  S   : V  Y  G  R  A  W  M  Q  F  *  G  L  S  K  R  R  A  H  C  G  *  A  E  E  :  E  K  S  K  G  N  T  N  I  T  W  T  R :   Y  T  S  R  F  R  H  I  I  A  N  C  T  G  T  W  T  N  N  S  V  I  W  C  L  Y  G  F  A  M  H  G  R  G  F  W  R :   K  N  C  A  I  S  I  W  G  D  A  R  E  K  L  P  C  I  L  *  R  R  R  G  R  W  F  I  C  R  A  I  K  :  P  I  H  S  W  *  I  P  Q  P  G  N  R  Q  G  H  F   </first_frame>
            <second_frame>  *  T  L  S  R  C  L  R  K  T  L  P  P  H  F  T  A  A  A  V  A  T  V  T  A  T  A  T  A  T  A  T  A  V  V  D  R  R  R  P  I  T  A  S  N  E  D  I  S  F  S  P  Q  S  L  M  A  G  I  V  T  P  H  V  S  S  Q  S  A  I  V  H  I  N  G  K  N  T  F  L  S  P  Q  K  T  L  D  F  P  I  L  S  G  S  G  G  S  F  L  R  M  R  S  T  K  R  L  E  V  K  P  L  A  V  S  Q  N  S  S  A  T  C  V  E  L  S  D  D  V  K  R  N  K  S  P  I  I  V  I  D  N  Y  D  S  F  T  Y  N  L  C  Q  :  Y  M  G  E  L  G  C  S  F  E  V  Y  R  N  D  E  L  T  V  D  E  L  K  K :   K  N  P  R  G  I  L  I  S  P  G  P   : G  T  P  Q  D  S  G  I  S  L  Q  T  V  L  E  L  G  P  T  I  P  L  F  G  V  C  M  G  L  Q  C  M  G  E  A  F  G   : G  K  I  V  R  S  P  Y  G  V  M  H  G  K  S  S  P  V  Y  Y  N  E  G  G  E  D  G  L  F  A  G  L  S  N :   P  F  T  A  G  R  Y  H  S  L  V  I  D  K  D  T  F  </second_frame>
            <third_frame>   K  H  S  P  A  V  F  G  K  H  F  H  L  T  S  P  L  P  P  S  P  P  S  P  P  P  P  P  P  P  P  P  L  L  *  I  D  G  V  Q  S  Q  P  R  T  R  T  F  H  S  L  H  N  L  S  W  P  E  L  L  P  L  M  S  L  H  N  P  P  S  F  T  S  M  A  K  T  H  F  S  R  P  K  K  P  *  I  F  Q  F  S  P  A  P  E  A  R  F  S  E  *  E  A  Q  S  G  S  R  *  S  R  L  L  Y  R  R  T  V  Q  L  L  V  L  S  Y  R  M  M  L  N  G  I  R  V  R  L  L  L  L  I  I  M  I  A  S  L  I  I  S  V  S :   I  W  E  S  L  D  A  V  L  R  F  I  E  T  T  S  S  L  W  M  S  *  R   : R  K  I  Q  G  E  Y  *  Y  H  L  D  Q  :  V  H  L  K  I  Q  A  Y  H  C  K  L  Y  W  N  L  D  Q  Q  F  R  Y  L  V  F  V  W  V  C  N  A  W  E  R  L  L  E  :  E  K  L  C  D  L  H  M  G  *  C  T  G  K  A  P  L  Y  I  I  T  K  A  G  K  M  V  Y  L  Q  G  Y  Q   : T  H  S  Q  L  V  D  T  T  A  W  *  *  T  R  T  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10521" stop="10072"/>
                    <exon start="9571" stop="9501"/>
                    <exon start="8390" stop="8353"/>
                    <exon start="8254" stop="8144"/>
                    <exon start="4887" stop="4788"/>
                    <exon start="795" stop="744"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSRCLRKTLPPHFTAAAVATVTATATATATAVVDRRRPITASNEDISFSPQSLMAGIVTPHVSSQSAIVHINGKNTFLSPQKTLDFPILSGSGGSFLRMRSTKRLEVKPLAVSQNSSATCVELSDDVKRNKSPIIVIDNYDSFTYNLCQYMGELGCSFEVYRNDELTVDELKKKNPRGILISPGPGTPQDSGISLQTVLELGPTIPLFGVCMGLQCMGEAFGGKIVRSPYGVMHGKSSPVYYNEGGEDGLFAGLSNPFTAGRYHSLVIDKDTF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="17548" PGL_stop="19119"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17548" e_stop="17796"/>
            <exon e_start="17913" e_stop="18428"/>
            <exon e_start="18518" e_stop="18522"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.822" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17548" e_stop="17796" e_length="249"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17797" i_stop="17912" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="17913" e_stop="18428" e_length="516"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.822">
            <gDNA_intron_boundary i_start="18429" i_stop="18517" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18518" e_stop="18522" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17548" stop="17796"/>
              <exon start="17913" stop="18428"/>
              <exon start="18518" stop="18522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321335" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACCCCTCACTTCAGTTTTTTCTTCTTCACTTTATATGAAAAGACTCAATTTTTTTACCCTTATAATCTAAATCTTTTTGCATATCTAGTTTGGTGATCCAATACCCTTTTGGCTTTTAGTTTGTTTTTTCAATTTTTTCTTGTTCACTTTGTATTAAAGACTCAATTTTTTTGTTCACTTTGTATTAAAGACTCGTTTTTATCCGTGTAATATGAATCTTTTTGCATTTCTGGTTTAGTGATTCA : ATACCTTTTGGATTTTTGTTTCATCAATTCTTTTTCTTGTTCAGTTTGTATCAAGACTCTTTCTTTTTTTAATCATTATAATATGAATCTTTTTGCATATCTTGTTTGGTGATTTAATACCATTTTGGTTTATGTTTCAATTTTTTCTTATTCACTTTGTATCGAGACTCATTTTTTATCCTTGTAATCTGAGTTCATTTGCATATGTTGTTTAAATTATCCAGTACCCTTTTGTATTGTGGTTTATATTTATGCTTTTCATGAGGCTATTCATCATTACTCCATTTTATTTTTTTGTTTGACTTTCTATCAAGACTCAATTTTTATCCATCTGAATCTGTTTTTGTATAATCTTGTTTAATGTTCCAATACCCTTTTGGCTTTTGTTTCATCTTTATGCTTTGATGAGGCTATTACGACGATGTACGAGGATTTCTATCCTCTGTTTGCTTGCTATTTCAGTATTCACTCCTGTTTTCTTGCTTTCATTTAGGCTCAAAAACCTTAACACTGATG : CATCT</gDNA_template>
            <first_frame> K  N  P  S  L  Q  F  F  L  L  H  F  I  *  K  D  S  I  F  L  P  L  *  S  K  S  F  C  I  S  S  L  V  I  Q  Y  P  F  G  F  *  F  V  F  S  I  F  S  C  S  L  C  I  K  D  S  I  F  L  F  T  L  Y  *  R  L  V  F  I  R  V  I  *  I  F  L  H  F  W  F  S  D  S  :  I  P  F  G  F  L  F  H  Q  F  F  F  L  F  S  L  Y  Q  D  S  F  F  F  *  S  L  *  Y  E  S  F  C  I  S  C  L  V  I  *  Y  H  F  G  L  C  F  N  F  F  L  F  T  L  Y  R  D  S  F  F  I  L  V  I  *  V  H  L  H  M  L  F  K  L  S  S  T  L  L  Y  C  G  L  Y  L  C  F  S  *  G  Y  S  S  L  L  H  F  I  F  L  F  D  F  L  S  R  L  N  F  Y  P  S  E  S  V  F  V  *  S  C  L  M  F  Q  Y  P  F  G  F  C  F  I  F  M  L  *  *  G  Y  Y  D  D  V  R  G  F  L  S  S  V  C  L  L  F  Q  Y  S  L  L  F  S  C  F  H  L  G  S  K  T  L  T  L  M  :  H   </first_frame>
            <second_frame>  K  T  P  H  F  S  F  F  F  F  T  L  Y  E  K  T  Q  F  F  Y  P  Y  N  L  N  L  F  A  Y  L  V  W  *  S  N  T  L  L  A  F  S  L  F  F  Q  F  F  L  V  H  F  V  L  K  T  Q  F  F  C  S  L  C  I  K  D  S  F  L  S  V  *  Y  E  S  F  C  I  S  G  L  V  I  Q :   Y  L  L  D  F  C  F  I  N  S  F  S  C  S  V  C  I  K  T  L  S  F  F  N  H  Y  N  M  N  L  F  A  Y  L  V  W  *  F  N  T  I  L  V  Y  V  S  I  F  S  Y  S  L  C  I  E  T  H  F  L  S  L  *  S  E  F  I  C  I  C  C  L  N  Y  P  V  P  F  C  I  V  V  Y  I  Y  A  F  H  E  A  I  H  H  Y  S  I  L  F  F  C  L  T  F  Y  Q  D  S  I  F  I  H  L  N  L  F  L  Y  N  L  V  *  C  S  N  T  L  L  A  F  V  S  S  L  C  F  D  E  A  I  T  T  M  Y  E  D  F  Y  P  L  F  A  C  Y  F  S  I  H  S  C  F  L  A  F  I  *  A  Q  K  P  *  H  *  C :   I  </second_frame>
            <third_frame>   K  P  L  T  S  V  F  S  S  S  L  Y  M  K  R  L  N  F  F  T  L  I  I  *  I  F  L  H  I  *  F  G  D  P  I  P  F  W  L  L  V  C  F  F  N  F  F  L  F  T  L  Y  *  R  L  N  F  F  V  H  F  V  L  K  T  R  F  Y  P  C  N  M  N  L  F  A  F  L  V  *  *  F   : N  T  F  W  I  F  V  S  S  I  L  F  L  V  Q  F  V  S  R  L  F  L  F  L  I  I  I  I  *  I  F  L  H  I  L  F  G  D  L  I  P  F  W  F  M  F  Q  F  F  L  I  H  F  V  S  R  L  I  F  Y  P  C  N  L  S  S  F  A  Y  V  V  *  I  I  Q  Y  P  F  V  L  W  F  I  F  M  L  F  M  R  L  F  I  I  T  P  F  Y  F  F  V  *  L  S  I  K  T  Q  F  L  S  I  *  I  C  F  C  I  I  L  F  N  V  P  I  P  F  W  L  L  F  H  L  Y  A  L  M  R  L  L  R  R  C  T  R  I  S  I  L  C  L  L  A  I  S  V  F  T  P  V  F  L  L  S  F  R  L  K  N  L  N  T  D   : A  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0072J06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17904" e_stop="18428"/>
            <exon e_start="18518" e_stop="18552"/>
            <exon e_start="19102" e_stop="19119"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.822" e_score="0.998"/>
          <exon-intron don_prob="0.932" acc_prob="0.837" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="17904" e_stop="18428" e_length="525"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.822">
            <gDNA_intron_boundary i_start="18429" i_stop="18517" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18518" e_stop="18552" e_length="35"/>
          </exon>
          <intron i_serial="2" don_prob="0.932" acc_prob="0.837">
            <gDNA_intron_boundary i_start="18553" i_stop="19101" i_length="549"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19102" e_stop="19119" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17904" stop="18428"/>
              <exon start="18518" stop="18552"/>
              <exon start="19102" stop="19119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300168" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTGATCCAATACCTTTTGGATTTTTGTTTCATCAATTCTTTTTCTTGTTCAGTTTGTATCAAGACTCTTTCTTTTTTTAATCATTATAATATGAATCTTTTTGCATATCTTGTTTGGTGATTTAATACCATTTTGGTTTATGTTTCAATTTTTTCTTATTCACTTTGTATCGAGACTCATTTTTTATCCTTGTAATCTGAGTTCATTTGCATATGTTGTTTAAATTATCCAGTACCCTTTTGTATTGTGGTTTATATTTATGCTTTTCATGAGGCTATTCATCATTACTCCATTTTATTTTTTTGTTTGACTTTCTATCAAGACTCAATTTTTATCCATCTGAATCTGTTTTTGTATAATCTTGTTTAATGTTCCAATACCCTTTTGGCTTTTGTTTCATCTTTATGCTTTGATGAGGCTATTACGACGATGTACGAGGATTTCTATCCTCTGTTTGCTTGCTATTTCAGTATTCACTCCTGTTTTCTTGCTTTCATTTAGGCTCAAAAACCTTAACACTGATG : CATCTAAAGACTTTGTTGAAGACTTATCGATTCTT : AAGCATAGAATAGATGCT</gDNA_template>
            <first_frame> G  D  P  I  P  F  G  F  L  F  H  Q  F  F  F  L  F  S  L  Y  Q  D  S  F  F  F  *  S  L  *  Y  E  S  F  C  I  S  C  L  V  I  *  Y  H  F  G  L  C  F  N  F  F  L  F  T  L  Y  R  D  S  F  F  I  L  V  I  *  V  H  L  H  M  L  F  K  L  S  S  T  L  L  Y  C  G  L  Y  L  C  F  S  *  G  Y  S  S  L  L  H  F  I  F  L  F  D  F  L  S  R  L  N  F  Y  P  S  E  S  V  F  V  *  S  C  L  M  F  Q  Y  P  F  G  F  C  F  I  F  M  L  *  *  G  Y  Y  D  D  V  R  G  F  L  S  S  V  C  L  L  F  Q  Y  S  L  L  F  S  C  F  H  L  G  S  K  T  L  T  L  M  :  H  L  K  T  L  L  K  T  Y  R  F  L :   S  I  E  *  M   </first_frame>
            <second_frame>  V  I  Q  Y  L  L  D  F  C  F  I  N  S  F  S  C  S  V  C  I  K  T  L  S  F  F  N  H  Y  N  M  N  L  F  A  Y  L  V  W  *  F  N  T  I  L  V  Y  V  S  I  F  S  Y  S  L  C  I  E  T  H  F  L  S  L  *  S  E  F  I  C  I  C  C  L  N  Y  P  V  P  F  C  I  V  V  Y  I  Y  A  F  H  E  A  I  H  H  Y  S  I  L  F  F  C  L  T  F  Y  Q  D  S  I  F  I  H  L  N  L  F  L  Y  N  L  V  *  C  S  N  T  L  L  A  F  V  S  S  L  C  F  D  E  A  I  T  T  M  Y  E  D  F  Y  P  L  F  A  C  Y  F  S  I  H  S  C  F  L  A  F  I  *  A  Q  K  P  *  H  *  C :   I  *  R  L  C  *  R  L  I  D  S   : *  A  *  N  R  C  </second_frame>
            <third_frame>   *  S  N  T  F  W  I  F  V  S  S  I  L  F  L  V  Q  F  V  S  R  L  F  L  F  L  I  I  I  I  *  I  F  L  H  I  L  F  G  D  L  I  P  F  W  F  M  F  Q  F  F  L  I  H  F  V  S  R  L  I  F  Y  P  C  N  L  S  S  F  A  Y  V  V  *  I  I  Q  Y  P  F  V  L  W  F  I  F  M  L  F  M  R  L  F  I  I  T  P  F  Y  F  F  V  *  L  S  I  K  T  Q  F  L  S  I  *  I  C  F  C  I  I  L  F  N  V  P  I  P  F  W  L  L  F  H  L  Y  A  L  M  R  L  L  R  R  C  T  R  I  S  I  L  C  L  L  A  I  S  V  F  T  P  V  F  L  L  S  F  R  L  K  N  L  N  T  D   : A  S  K  D  F  V  E  D  L  S  I  L  :  K  H  R  I  D  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18248" stop="18428"/>
                    <exon start="18518" stop="18552"/>
                    <exon start="19102" stop="19119"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICFCIILFNVPIPFWLLFHLYALMRLLRRCTRISILCLLAISVFTPVFLLSFRLKNLNTDASKDFVEDLSILKHRIDA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="19751" PGL_stop="22588"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19751" e_stop="19818"/>
            <exon e_start="20525" e_stop="20757"/>
            <exon e_start="21465" e_stop="21822"/>
            <exon e_start="22501" e_stop="22588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.831" acc_prob="0.449" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="0.992"/>
          <exon-only e_score="0.841"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19751" e_stop="19818" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.831" acc_prob="0.449">
            <gDNA_intron_boundary i_start="19819" i_stop="20524" i_length="706"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20525" e_stop="20757" e_length="233"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.974">
            <gDNA_intron_boundary i_start="20758" i_stop="21464" i_length="707"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="21465" e_stop="21822" e_length="358"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="21823" i_stop="22500" i_length="678"/>
          </intron>
          <exon e_serial="4" e_score="0.841">
            <gDNA_exon_boundary e_start="22501" e_stop="22588" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19751" stop="19818"/>
              <exon start="20525" stop="20757"/>
              <exon start="21465" stop="21822"/>
              <exon start="22501" stop="22588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19757" stop="19818"/>
              <exon start="20525" stop="20757"/>
              <exon start="21465" stop="21822"/>
              <exon start="22501" stop="22539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19769" stop="19818"/>
              <exon start="20525" stop="20757"/>
              <exon start="21465" stop="21661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581725" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATATGGTGGACAAGAAAAAAATCAACGAAATCTATCTGAGCAGAAAGTGTCCCCATCTAGAGAAAAG : GAGAAGTCCAAACCAGAAGGGGTTCAACACAGTCGAAGCATACAGTCACATCTGCGAAGGCCATTAGATGAGAAGGTAAAAGAGATGAAAGATAAGGTGATAAGGGCCAAAGCGTACTTGAGTTTTGCACCACCAGATAGCACCTCTCATTTTGTGAAAGAGATAAAGCTACGAATTAAAGAGCTAGAACGAGCAATGGGTGACGTTACTAAAGATTCTGGTTTGTCAAGGAG : GGCCACACAAAAGATGAAAGCCATGGATGGGACCCTGCTGAAAGCAAGCAGAATATACCCTGATTGCTCAGCTATGGTGAATACACTACGTGCCATGATGTATAATGCTGAAGAACAGCTTCGATCACAAAGGGATCATACTTCCTTCCTCGTACAGCTCGCTGCAAGAACTACACCAAAAGGCCTTCATTGCCTTTCCATGCGGTTGACCACAGAATATTTTGATCTGCAGCCTGAGGAGCGGGAGTTTCCTAACCAACACAAACTGCAGGATCCCAATCTCTATCACTTTGCTGTTTTCTCAGACAATGTTTTGGCATGTTCTGTGGTTGTCAATTCAACTGTTTCAACCGCTAAG : GATCCAGAGAAAATTGTCTTCCATATAGTGACTGATTCTCTCAACCTGCCAGCGATGTCGATGTGGTTCTTGATGAATCCTCCTGGAA</gDNA_template>
            <first_frame> H  M  V  D  K  K  K  I  N  E  I  Y  L  S  R  K  C  P  H  L  E  K  R :   R  S  P  N  Q  K  G  F  N  T  V  E  A  Y  S  H  I  C  E  G  H  *  M  R  R  *  K  R  *  K  I  R  *  *  G  P  K  R  T  *  V  L  H  H  Q  I  A  P  L  I  L  *  K  R  *  S  Y  E  L  K  S  *  N  E  Q  W  V  T  L  L  K  I  L  V  C  Q  G   : G  P  H  K  R  *  K  P  W  M  G  P  C  *  K  Q  A  E  Y  T  L  I  A  Q  L  W  *  I  H  Y  V  P  *  C  I  M  L  K  N  S  F  D  H  K  G  I  I  L  P  S  S  Y  S  S  L  Q  E  L  H  Q  K  A  F  I  A  F  P  C  G  *  P  Q  N  I  L  I  C  S  L  R  S  G  S  F  L  T  N  T  N  C  R  I  P  I  S  I  T  L  L  F  S  Q  T  M  F  W  H  V  L  W  L  S  I  Q  L  F  Q  P  L  R :   I  Q  R  K  L  S  S  I  *  *  L  I  L  S  T  C  Q  R  C  R  C  G  S  *  *  I  L  L  E </first_frame>
            <second_frame>  I  W  W  T  R  K  K  S  T  K  S  I  *  A  E  S  V  P  I  *  R  K   : G  E  V  Q  T  R  R  G  S  T  Q  S  K  H  T  V  T  S  A  K  A  I  R  *  E  G  K  R  D  E  R  *  G  D  K  G  Q  S  V  L  E  F  C  T  T  R  *  H  L  S  F  C  E  R  D  K  A  T  N  *  R  A  R  T  S  N  G  *  R  Y  *  R  F  W  F  V  K  E  :  G  H  T  K  D  E  S  H  G  W  D  P  A  E  S  K  Q  N  I  P  *  L  L  S  Y  G  E  Y  T  T  C  H  D  V  *  C  *  R  T  A  S  I  T  K  G  S  Y  F  L  P  R  T  A  R  C  K  N  Y  T  K  R  P  S  L  P  F  H  A  V  D  H  R  I  F  *  S  A  A  *  G  A  G  V  S  *  P  T  Q  T  A  G  S  Q  S  L  S  L  C  C  F  L  R  Q  C  F  G  M  F  C  G  C  Q  F  N  C  F  N  R  *   : G  S  R  E  N  C  L  P  Y  S  D  *  F  S  Q  P  A  S  D  V  D  V  V  L  D  E  S  S  W   </second_frame>
            <third_frame>   Y  G  G  Q  E  K  N  Q  R  N  L  S  E  Q  K  V  S  P  S  R  E  K  :  E  K  S  K  P  E  G  V  Q  H  S  R  S  I  Q  S  H  L  R  R  P  L  D  E  K  V  K  E  M  K  D  K  V  I  R  A  K  A  Y  L  S  F  A  P  P  D  S  T  S  H  F  V  K  E  I  K  L  R  I  K  E  L  E  R  A  M  G  D  V  T  K  D  S  G  L  S  R  R :   A  T  Q  K  M  K  A  M  D  G  T  L  L  K  A  S  R  I  Y  P  D  C  S  A  M  V  N  T  L  R  A  M  M  Y  N  A  E  E  Q  L  R  S  Q  R  D  H  T  S  F  L  V  Q  L  A  A  R  T  T  P  K  G  L  H  C  L  S  M  R  L  T  T  E  Y  F  D  L  Q  P  E  E  R  E  F  P  N  Q  H  K  L  Q  D  P  N  L  Y  H  F  A  V  F  S  D  N  V  L  A  C  S  V  V  V  N  S  T  V  S  T  A  K  :  D  P  E  K  I  V  F  H  I  V  T  D  S  L  N  L  P  A  M  S  M  W  F  L  M  N  P  P  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19753" stop="19818"/>
                    <exon start="20525" stop="20757"/>
                    <exon start="21465" stop="21822"/>
                    <exon start="22501" stop="22587"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YGGQEKNQRNLSEQKVSPSREKEKSKPEGVQHSRSIQSHLRRPLDEKVKEMKDKVIRAKAYLSFAPPDSTSHFVKEIKLRIKELERAMGDVTKDSGLSRRATQKMKAMDGTLLKASRIYPDCSAMVNTLRAMMYNAEEQLRSQRDHTSFLVQLAARTTPKGLHCLSMRLTTEYFDLQPEEREFPNQHKLQDPNLYHFAVFSDNVLACSVVVNSTVSTAKDPEKIVFHIVTDSLNLPAMSMWFLMNPPG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="29468" PGL_stop="28715"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29468" e_stop="28715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="29468" e_stop="28715" e_length="754"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29468" stop="29240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29311" stop="28715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29174" stop="29012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447233" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATTTTAAATATACATCTGGTGGGACGGGAGGTTCAACGGGGGGATTAAAAAAACATTTGATTAACAAGCATAGTAAAGAGTGGTTTGCATATATGTCTTCTCTTGAAGTTGGTGGAAATTGTAATGTTGAAGAATCGGTTAGAGGATCAAATATGGTTCGAAGTGAGTTAAATACTTCGAACCCAAGTGGTCCTCTTACACATCGAACCTATAACAAGGATCGTGATCGTGAAAACTTTGCTAAAATGGTTGTTGTTTGTGGTTTACCTTTTAGTTTTGGAGAACATCCGGGTTTTATTGCTTATATTCGTGAAACATATAATCCTAGTTTTCAAGGTTTATCAAGAAGCATGGTAAAAAGAGATATTTTCGAATTTCAAGAAAAACATTGTCAATATTTACGTGCCTATTTTGAACTAATGGATTGTAGAGTTGCTATTACTACTGATATGGGTCGTAGTCCTAATGGTTTTGATTATTTAACTGTTACTGCGCATTGGATCGATTATAATTAGAATTTACAAAAAAGAATTATTGGTTATAAAATTTGTCAAAAGAAAAAAACCGGAATTTATATTGCTACTACTGTGTTGGAAATTTTAGATTTTTTTGGTCTTTGTGATAAAGTCGTTAGTATTACTTTAGATAATGTCTCTGCTAATTTAAATGCTATTAATTTGCTAGAACCTAGACTTTGTCCTATTAGTAAATATGCTTTTCATGTTAGATGTGCCGCGCATATATTAAATTTG</gDNA_template>
            <first_frame> T  F  *  I  Y  I  W  W  D  G  R  F  N  G  G  I  K  K  T  F  D  *  Q  A  *  *  R  V  V  C  I  Y  V  F  S  *  S  W  W  K  L  *  C  *  R  I  G  *  R  I  K  Y  G  S  K  *  V  K  Y  F  E  P  K  W  S  S  Y  T  S  N  L  *  Q  G  S  *  S  *  K  L  C  *  N  G  C  C  L  W  F  T  F  *  F  W  R  T  S  G  F  Y  C  L  Y  S  *  N  I  *  S  *  F  S  R  F  I  K  K  H  G  K  K  R  Y  F  R  I  S  R  K  T  L  S  I  F  T  C  L  F  *  T  N  G  L  *  S  C  Y  Y  Y  *  Y  G  S  *  S  *  W  F  *  L  F  N  C  Y  C  A  L  D  R  L  *  L  E  F  T  K  K  N  Y  W  L  *  N  L  S  K  E  K  N  R  N  L  Y  C  Y  Y  C  V  G  N  F  R  F  F  W  S  L  *  *  S  R  *  Y  Y  F  R  *  C  L  C  *  F  K  C  Y  *  F  A  R  T  *  T  L  S  Y  *  *  I  C  F  S  C  *  M  C  R  A  Y  I  K  F  </first_frame>
            <second_frame>  H  F  K  Y  T  S  G  G  T  G  G  S  T  G  G  L  K  K  H  L  I  N  K  H  S  K  E  W  F  A  Y  M  S  S  L  E  V  G  G  N  C  N  V  E  E  S  V  R  G  S  N  M  V  R  S  E  L  N  T  S  N  P  S  G  P  L  T  H  R  T  Y  N  K  D  R  D  R  E  N  F  A  K  M  V  V  V  C  G  L  P  F  S  F  G  E  H  P  G  F  I  A  Y  I  R  E  T  Y  N  P  S  F  Q  G  L  S  R  S  M  V  K  R  D  I  F  E  F  Q  E  K  H  C  Q  Y  L  R  A  Y  F  E  L  M  D  C  R  V  A  I  T  T  D  M  G  R  S  P  N  G  F  D  Y  L  T  V  T  A  H  W  I  D  Y  N  *  N  L  Q  K  R  I  I  G  Y  K  I  C  Q  K  K  K  T  G  I  Y  I  A  T  T  V  L  E  I  L  D  F  F  G  L  C  D  K  V  V  S  I  T  L  D  N  V  S  A  N  L  N  A  I  N  L  L  E  P  R  L  C  P  I  S  K  Y  A  F  H  V  R  C  A  A  H  I  L  N  L </second_frame>
            <third_frame>   I  L  N  I  H  L  V  G  R  E  V  Q  R  G  D  *  K  N  I  *  L  T  S  I  V  K  S  G  L  H  I  C  L  L  L  K  L  V  E  I  V  M  L  K  N  R  L  E  D  Q  I  W  F  E  V  S  *  I  L  R  T  Q  V  V  L  L  H  I  E  P  I  T  R  I  V  I  V  K  T  L  L  K  W  L  L  F  V  V  Y  L  L  V  L  E  N  I  R  V  L  L  L  I  F  V  K  H  I  I  L  V  F  K  V  Y  Q  E  A  W  *  K  E  I  F  S  N  F  K  K  N  I  V  N  I  Y  V  P  I  L  N  *  W  I  V  E  L  L  L  L  L  I  W  V  V  V  L  M  V  L  I  I  *  L  L  L  R  I  G  S  I  I  I  R  I  Y  K  K  E  L  L  V  I  K  F  V  K  R  K  K  P  E  F  I  L  L  L  L  C  W  K  F  *  I  F  L  V  F  V  I  K  S  L  V  L  L  *  I  M  S  L  L  I  *  M  L  L  I  C  *  N  L  D  F  V  L  L  V  N  M  L  F  M  L  D  V  P  R  I  Y  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29467" stop="28952"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFKYTSGGTGGSTGGLKKHLINKHSKEWFAYMSSLEVGGNCNVEESVRGSNMVRSELNTSNPSGPLTHRTYNKDRDRENFAKMVVVCGLPFSFGEHPGFIAYIRETYNPSFQGLSRSMVKRDIFEFQEKHCQYLRAYFELMDCRVAITTDMGRSPNGFDYLTVTAHWIDYN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28951" stop="28715"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLQKRIIGYKICQKKKTGIYIATTVLEILDFFGLCDKVVSITLDNVSANLNAINLLEPRLCPISKYAFHVRCAAHILNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="29735" PGL_stop="30199"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29735" e_stop="30199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="29735" e_stop="30199" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29735" stop="30199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279240" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAATACCATAATATCTTTCATAGAGTTCATGGGGAGTCGGACTATCTGAATTAATATTTATAGGACCGGGGCGGGAAAAACTAGTTTCATTCACATGCGTAAATTCATCTGTATTTATTCTAACAAGAGGAATTTTAGATTTAGACGAACTAGCACCTTTGTTAGTTTTTTTAACTAATTTTTTTACTGATTCTACTAGACCTTTTTTACTTCCACTTTTTTTAGAAGACTCCATGATATAAAATTATAAATTATAAAATACGAAACTTAACAAGAACAACTTACAAGTTAAATAATAAATACAAAAAATAAATATAAGATTAGAGAGTGGAACGAAGTTACCAAACGTTTGTATAAGAACAAACTATTATAATGAAAATTAAAATATTGATGTCGAAACTTGAAATTTGAAGAAGATTCCTCCTCCGAAATACACCAAATGACCAAATGATATAAGTTATAA</gDNA_template>
            <first_frame> I  N  T  I  I  S  F  I  E  F  M  G  S  R  T  I  *  I  N  I  Y  R  T  G  A  G  K  T  S  F  I  H  M  R  K  F  I  C  I  Y  S  N  K  R  N  F  R  F  R  R  T  S  T  F  V  S  F  F  N  *  F  F  Y  *  F  Y  *  T  F  F  T  S  T  F  F  R  R  L  H  D  I  K  L  *  I  I  K  Y  E  T  *  Q  E  Q  L  T  S  *  I  I  N  T  K  N  K  Y  K  I  R  E  W  N  E  V  T  K  R  L  Y  K  N  K  L  L  *  *  K  L  K  Y  *  C  R  N  L  K  F  E  E  D  S  S  S  E  I  H  Q  M  T  K  *  Y  K  L  * </first_frame>
            <second_frame>  L  I  P  *  Y  L  S  *  S  S  W  G  V  G  L  S  E  L  I  F  I  G  P  G  R  E  K  L  V  S  F  T  C  V  N  S  S  V  F  I  L  T  R  G  I  L  D  L  D  E  L  A  P  L  L  V  F  L  T  N  F  F  T  D  S  T  R  P  F  L  L  P  L  F  L  E  D  S  M  I  *  N  Y  K  L  *  N  T  K  L  N  K  N  N  L  Q  V  K  *  *  I  Q  K  I  N  I  R  L  E  S  G  T  K  L  P  N  V  C  I  R  T  N  Y  Y  N  E  N  *  N  I  D  V  E  T  *  N  L  K  K  I  P  P  P  K  Y  T  K  *  P  N  D  I  S  Y   </second_frame>
            <third_frame>   *  Y  H  N  I  F  H  R  V  H  G  E  S  D  Y  L  N  *  Y  L  *  D  R  G  G  K  N  *  F  H  S  H  A  *  I  H  L  Y  L  F  *  Q  E  E  F  *  I  *  T  N  *  H  L  C  *  F  F  *  L  I  F  L  L  I  L  L  D  L  F  Y  F  H  F  F  *  K  T  P  *  Y  K  I  I  N  Y  K  I  R  N  L  T  R  T  T  Y  K  L  N  N  K  Y  K  K  *  I  *  D  *  R  V  E  R  S  Y  Q  T  F  V  *  E  Q  T  I  I  M  K  I  K  I  L  M  S  K  L  E  I  *  R  R  F  L  L  R  N  T  P  N  D  Q  M  I  *  V  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29760" stop="29978"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSWGVGLSELIFIGPGREKLVSFTCVNSSVFILTRGILDLDELAPLLVFLTNFFTDSTRPFLLPLFLEDSMI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="39798" PGL_stop="40248"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39798" e_stop="40248"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="39798" e_stop="40248" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39798" stop="40122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39798" stop="40090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39799" stop="40248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATATATATTGCATAATTATAAGTGTATAGCAAGAAGAAATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATATACTTCTGTTGTATAAAGCTAGATAAAATTGTATTTCAGTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATCTGTATATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTATACACTTCTGTGTATAAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCAAGATTTTTGGGAGAGAGACGCTGACAAATTTTAATTAATGTTTGTTATGGAGCACAATTAAATTAAACCCTAACTATTTCATTTAATTTAGATTATTAA</gDNA_template>
            <first_frame> *  N  V  Y  I  L  H  N  Y  K  C  I  A  R  R  N  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  Y  F  C  C  I  K  L  D  K  I  V  F  Q  C  N  C  I  I  R  N  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  S  V  Y  I  Q  F  S  L  A  L  Y  K  I  E  T  E  L  Y  T  S  V  Y  K  S  E  R  G  E  R  E  W  R  V  A  S  K  I  F  G  R  E  T  L  T  N  F  N  *  C  L  L  W  S  T  I  K  L  N  P  N  Y  F  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  I  Y  C  I  I  I  S  V  *  Q  E  E  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  I  K  L  Y  F  S  A  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  L  Y  I  Y  N  F  L  S  L  Y  T  K  *  K  Q  N  Y  T  L  L  C  I  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  R  R  *  Q  I  L  I  N  V  C  Y  G  A  Q  L  N  *  T  L  T  I  S  F  N  L  D  Y  * </second_frame>
            <third_frame>   K  C  I  Y  I  A  *  L  *  V  Y  S  K  K  K  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  I  L  L  L  Y  K  A  R  *  N  C  I  S  V  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  I  C  I  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  K  R  E  R  R  A  R  M  E  S  G  E  Q  D  F  W  E  R  D  A  D  K  F  *  L  M  F  V  M  E  H  N  *  I  K  P  *  L  F  H  L  I  *  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0072J06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="41443" PGL_stop="45673"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41443" e_stop="41559"/>
            <exon e_start="43655" e_stop="44960"/>
            <exon e_start="45658" e_stop="45673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41443" e_stop="41559" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="41560" i_stop="43654" i_length="2095"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43655" e_stop="44960" e_length="1306"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44961" i_stop="45657" i_length="697"/>
          </intron>
          <exon e_serial="3" e_score="0.938">
            <gDNA_exon_boundary e_start="45658" e_stop="45673" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41443" stop="41559"/>
              <exon start="43655" stop="43909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41453" stop="41559"/>
              <exon start="43655" stop="43965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41502" stop="41559"/>
              <exon start="43655" stop="44298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43724" stop="44250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44126" stop="44697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44485" stop="44960"/>
              <exon start="45658" stop="45673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203091" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTTCTCCGGCAACCAACTTTGTTCTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGAGGTGATTCCATTTGCTGTAGAAAATCACAAA : ATCCAAGCAAGATTAGAAAGAGCATCAGCCTCAAACAAGGAAGTACTATATCTACTACTAATCTTGGTCCTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTTGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGGAAGTCGCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTACAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGAACCTTCAGTAGCATTGGATGACGAAGGTGTGAAATTGCTAGAGTATATTATTGCAGAGCACAGGAAAAAAGGTGGTATTGTCATTGTCGCCACCCATCTGCCTATTCAGATCGAGGATGCAATGTTTTTAAGGTTGCCACCAAGGTTCCCTAGAAGGATGACTTTAGTAGACATGCTTGATAGAGGCGGCCTCGACTGATCATTAAGAAGATAAAGAGTCCAATCTAAAGAAGCTCTCCAATGAATTCAAAAGGGAGCTGTTTTCTCTTTCATTCTTGATGATTGCAAGAATTTCTCTATCTTTACTTTGTTAGCTCCTCCTCAATTTGCACTTCACTTTGCCCCTAAAATGTGCTGAGAACACATGCCCTCATTGGTCTAATGGTATGAACGGCAACATTGGATGTGTGGATTAGACGAATGTCACGAGTTTGAATTCGTTGCAGACAAAAGCTTGTAATTTAAGCAGCAAGGAGGGGTAAGTTCATTATCCATCGAGTTTCGAACCCTGTCGGCCGGCACTCGGGGATTTCTAGTTTTTTTGTAAAAGAATTTTTGTAGATAACACCTTGCATCAGATTATCAGATGTTGCGTTTCTCTTATACAACATCCCAAATAGCTTTATTGTTTGTATGCTAGTTTGAACCACAGAATTCAGTACTTATTTGGCTTTTGTAACAACTTTGGACATTACAATATAAGATAAGTCTTAGCTTTGTTTTGTCAGCAA : AAAACAAAAAAAAAAA</gDNA_template>
            <first_frame> V  F  S  G  N  Q  L  C  S  E  K  I  L  H  C  *  L  *  L  D  G  R  R  *  A  E  R  P  E  V  I  P  F  A  V  E  N  H  K  :  I  Q  A  R  L  E  R  A  S  A  S  N  K  E  V  L  Y  L  L  L  I  L  V  L  H  S  L  E  M  S  L  C  R  P  P  L  P  R  L  L  L  N  N  V  S  C  M  R  N  A  Q  Q  I  L  R  H  I  N  V  S  L  H  D  G  G  A  L  V  L  T  G  T  N  G  S  G  K  S  T  F  L  R  M  L  A  G  F  S  K  P  S  A  G  E  I  L  W  N  G  H  D  I  T  D  S  G  V  F  Q  Q  Y  K  L  Q  L  N  W  L  S  L  K  D  A  I  K  E  K  F  T  V  L  D  N  V  Q  W  F  E  V  L  E  G  K  Q  G  K  S  L  P  A  L  E  L  M  G  L  G  R  L  V  N  D  K  A  R  M  L  S  M  G  Q  R  K  R  V  Q  L  A  R  L  L  A  I  D  R  P  I  W  L  L  D  E  P  S  V  A  L  D  D  E  G  V  K  L  L  E  Y  I  I  A  E  H  R  K  K  G  G  I  V  I  V  A  T  H  L  P  I  Q  I  E  D  A  M  F  L  R  L  P  P  R  F  P  R  R  M  T  L  V  D  M  L  D  R  G  G  L  D  *  S  L  R  R  *  R  V  Q  S  K  E  A  L  Q  *  I  Q  K  G  A  V  F  S  F  I  L  D  D  C  K  N  F  S  I  F  T  L  L  A  P  P  Q  F  A  L  H  F  A  P  K  M  C  *  E  H  M  P  S  L  V  *  W  Y  E  R  Q  H  W  M  C  G  L  D  E  C  H  E  F  E  F  V  A  D  K  S  L  *  F  K  Q  Q  G  G  V  S  S  L  S  I  E  F  R  T  L  S  A  G  T  R  G  F  L  V  F  L  *  K  N  F  C  R  *  H  L  A  S  D  Y  Q  M  L  R  F  S  Y  T  T  S  Q  I  A  L  L  F  V  C  *  F  E  P  Q  N  S  V  L  I  W  L  L  *  Q  L  W  T  L  Q  Y  K  I  S  L  S  F  V  L  S  A   : K  N  K  K  K   </first_frame>
            <second_frame>  S  S  P  A  T  N  F  V  L  R  K  Y  F  I  A  S  C  S  S  T  D  G  G  K  Q  N  G  R  R  *  F  H  L  L  *  K  I  T  K :   S  K  Q  D  *  K  E  H  Q  P  Q  T  R  K  Y  Y  I  Y  Y  *  S  W  S  F  I  H  L  R  C  L  C  V  D  L  H  F  L  D  F  C  *  I  T  S  R  V  *  E  M  L  N  K  F  C  A  T  *  M  F  P  S  M  M  V  V  H  W  Y  *  Q  A  P  M  A  L  V  N  P  H  S  C  A  C  W  L  V  S  Q  N  H  Q  L  V  R  Y  S  G  M  A  M  T  L  L  I  Q  V  F  F  N  S  T  N  F  N  S  I  G  C  L  L  R  T  P  S  K  R  S  S  R  S  L  T  M  F  N  G  L  K  F  L  K  A  S  K  G  S  R  C  Q  L  W  N  L  W  G  L  E  D  *  *  T  I  K  H  G  C  F  L  W  V  K  G  K  G  Y  S  S  P  D  C  *  Q  L  I  D  L  F  G  C  L  M  N  L  Q  *  H  W  M  T  K  V  *  N  C  *  S  I  L  L  Q  S  T  G  K  K  V  V  L  S  L  S  P  P  I  C  L  F  R  S  R  M  Q  C  F  *  G  C  H  Q  G  S  L  E  G  *  L  *  *  T  C  L  I  E  A  A  S  T  D  H  *  E  D  K  E  S  N  L  K  K  L  S  N  E  F  K  R  E  L  F  S  L  S  F  L  M  I  A  R  I  S  L  S  L  L  C  *  L  L  L  N  L  H  F  T  L  P  L  K  C  A  E  N  T  C  P  H  W  S  N  G  M  N  G  N  I  G  C  V  D  *  T  N  V  T  S  L  N  S  L  Q  T  K  A  C  N  L  S  S  K  E  G  *  V  H  Y  P  S  S  F  E  P  C  R  P  A  L  G  D  F  *  F  F  C  K  R  I  F  V  D  N  T  L  H  Q  I  I  R  C  C  V  S  L  I  Q  H  P  K  *  L  Y  C  L  Y  A  S  L  N  H  R  I  Q  Y  L  F  G  F  C  N  N  F  G  H  Y  N  I  R  *  V  L  A  L  F  C  Q  Q  :  K  T  K  K  K  </second_frame>
            <third_frame>   L  L  R  Q  P  T  L  F  *  E  N  T  S  L  L  A  V  A  R  R  T  A  V  S  R  T  A  G  G  D  S  I  C  C  R  K  S  Q   : N  P  S  K  I  R  K  S  I  S  L  K  Q  G  S  T  I  S  T  T  N  L  G  P  S  F  T  *  D  V  F  V  *  T  S  T  S  S  T  S  A  E  *  R  L  V  Y  E  K  C  S  T  N  F  A  P  H  K  C  F  P  P  *  W  W  C  T  G  T  N  R  H  Q  W  L  W  *  I  H  I  L  A  H  V  G  W  F  L  K  T  I  S  W  *  D  T  L  E  W  P  *  H  Y  *  F  R  C  F  S  T  V  Q  T  S  T  Q  L  A  V  S  *  G  R  H  Q  R  E  V  H  G  P  *  Q  C  S  M  V  *  S  S  *  R  Q  A  R  E  V  A  A  S  F  G  T  Y  G  A  W  K  I  S  K  R  *  S  T  D  A  F  Y  G  S  K  E  K  G  T  A  R  Q  I  V  S  N  *  S  T  Y  L  V  A  *  *  T  F  S  S  I  G  *  R  R  C  E  I  A  R  V  Y  Y  C  R  A  Q  E  K  R  W  Y  C  H  C  R  H  P  S  A  Y  S  D  R  G  C  N  V  F  K  V  A  T  K  V  P  *  K  D  D  F  S  R  H  A  *  *  R  R  P  R  L  I  I  K  K  I  K  S  P  I  *  R  S  S  P  M  N  S  K  G  S  C  F  L  F  H  S  *  *  L  Q  E  F  L  Y  L  Y  F  V  S  S  S  S  I  C  T  S  L  C  P  *  N  V  L  R  T  H  A  L  I  G  L  M  V  *  T  A  T  L  D  V  W  I  R  R  M  S  R  V  *  I  R  C  R  Q  K  L  V  I  *  A  A  R  R  G  K  F  I  I  H  R  V  S  N  P  V  G  R  H  S  G  I  S  S  F  F  V  K  E  F  L  *  I  T  P  C  I  R  L  S  D  V  A  F  L  L  Y  N  I  P  N  S  F  I  V  C  M  L  V  *  T  T  E  F  S  T  Y  L  A  F  V  T  T  L  D  I  T  I  *  D  K  S  *  L  C  F  V  S  K :   K  Q  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41515" stop="41559"/>
                    <exon start="43655" stop="44428"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AERPEVIPFAVENHKIQARLERASASNKEVLYLLLILVLHSLEMSLCRPPLPRLLLNNVSCMRNAQQILRHINVSLHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITDSGVFQQYKLQLNWLSLKDAIKEKFTVLDNVQWFEVLEGKQGKSLPALELMGLGRLVNDKARMLSMGQRKRVQLARLLAIDRPIWLLDEPSVALDDEGVKLLEYIIAEHRKKGGIVIVATHLPIQIEDAMFLRLPPRFPRRMTLVDMLDRGGLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41468" e_stop="41559"/>
            <exon e_start="41620" e_stop="41658"/>
            <exon e_start="42661" e_stop="42670"/>
            <exon e_start="43683" e_stop="44960"/>
            <exon e_start="45658" e_stop="45673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.827" e_score="0.967"/>
          <exon-intron don_prob="0.761" acc_prob="0.000" e_score="0.436"/>
          <exon-intron don_prob="0.797" acc_prob="0.000" e_score="0.900"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="41468" e_stop="41559" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.827">
            <gDNA_intron_boundary i_start="41560" i_stop="41619" i_length="60"/>
          </intron>
          <exon e_serial="2" e_score="0.436">
            <gDNA_exon_boundary e_start="41620" e_stop="41658" e_length="39"/>
          </exon>
          <intron i_serial="2" don_prob="0.761" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41659" i_stop="42660" i_length="1002"/>
          </intron>
          <exon e_serial="3" e_score="0.900">
            <gDNA_exon_boundary e_start="42661" e_stop="42670" e_length="10"/>
          </exon>
          <intron i_serial="3" don_prob="0.797" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42671" i_stop="43682" i_length="1012"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="43683" e_stop="44960" e_length="1278"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44961" i_stop="45657" i_length="697"/>
          </intron>
          <exon e_serial="5" e_score="0.938">
            <gDNA_exon_boundary e_start="45658" e_stop="45673" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41468" stop="41559"/>
              <exon start="41620" stop="41658"/>
              <exon start="42661" stop="42670"/>
              <exon start="43683" stop="44229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41468" stop="41559"/>
              <exon start="41620" stop="41658"/>
              <exon start="42661" stop="42670"/>
              <exon start="43683" stop="44167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43724" stop="44250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44126" stop="44697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44485" stop="44960"/>
              <exon start="45658" stop="45673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203091" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGAGGTGATTCCATTTGCTGTAGAAAATCACAAA : CTTGTGATCATAACTTGTTGGATGAAATGCTTATGATGT : ATTTTCTGAT : CCTCAAACAAGGAAGTACTATATCTACTACTAATCTTGGTCCTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTTGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGGAAGTCGCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTACAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGAACCTTCAGTAGCATTGGATGACGAAGGTGTGAAATTGCTAGAGTATATTATTGCAGAGCACAGGAAAAAAGGTGGTATTGTCATTGTCGCCACCCATCTGCCTATTCAGATCGAGGATGCAATGTTTTTAAGGTTGCCACCAAGGTTCCCTAGAAGGATGACTTTAGTAGACATGCTTGATAGAGGCGGCCTCGACTGATCATTAAGAAGATAAAGAGTCCAATCTAAAGAAGCTCTCCAATGAATTCAAAAGGGAGCTGTTTTCTCTTTCATTCTTGATGATTGCAAGAATTTCTCTATCTTTACTTTGTTAGCTCCTCCTCAATTTGCACTTCACTTTGCCCCTAAAATGTGCTGAGAACACATGCCCTCATTGGTCTAATGGTATGAACGGCAACATTGGATGTGTGGATTAGACGAATGTCACGAGTTTGAATTCGTTGCAGACAAAAGCTTGTAATTTAAGCAGCAAGGAGGGGTAAGTTCATTATCCATCGAGTTTCGAACCCTGTCGGCCGGCACTCGGGGATTTCTAGTTTTTTTGTAAAAGAATTTTTGTAGATAACACCTTGCATCAGATTATCAGATGTTGCGTTTCTCTTATACAACATCCCAAATAGCTTTATTGTTTGTATGCTAGTTTGAACCACAGAATTCAGTACTTATTTGGCTTTTGTAACAACTTTGGACATTACAATATAAGATAAGTCTTAGCTTTGTTTTGTCAGCAA : AAAACAAAAAAAAAAA</gDNA_template>
            <first_frame> L  R  K  Y  F  I  A  S  C  S  S  T  D  G  G  K  Q  N  G  R  R  *  F  H  L  L  *  K  I  T  N :   L  *  S  *  L  V  G  *  N  A  Y  D  V :   F  S  D  :  P  Q  T  R  K  Y  Y  I  Y  Y  *  S  W  S  F  I  H  L  R  C  L  C  V  D  L  H  F  L  D  F  C  *  I  T  S  R  V  *  E  M  L  N  K  F  C  A  T  *  M  F  P  S  M  M  V  V  H  W  Y  *  Q  A  P  M  A  L  V  N  P  H  S  C  A  C  W  L  V  S  Q  N  H  Q  L  V  R  Y  S  G  M  A  M  T  L  L  I  Q  V  F  F  N  S  T  N  F  N  S  I  G  C  L  L  R  T  P  S  K  R  S  S  R  S  L  T  M  F  N  G  L  K  F  L  K  A  S  K  G  S  R  C  Q  L  W  N  L  W  G  L  E  D  *  *  T  I  K  H  G  C  F  L  W  V  K  G  K  G  Y  S  S  P  D  C  *  Q  L  I  D  L  F  G  C  L  M  N  L  Q  *  H  W  M  T  K  V  *  N  C  *  S  I  L  L  Q  S  T  G  K  K  V  V  L  S  L  S  P  P  I  C  L  F  R  S  R  M  Q  C  F  *  G  C  H  Q  G  S  L  E  G  *  L  *  *  T  C  L  I  E  A  A  S  T  D  H  *  E  D  K  E  S  N  L  K  K  L  S  N  E  F  K  R  E  L  F  S  L  S  F  L  M  I  A  R  I  S  L  S  L  L  C  *  L  L  L  N  L  H  F  T  L  P  L  K  C  A  E  N  T  C  P  H  W  S  N  G  M  N  G  N  I  G  C  V  D  *  T  N  V  T  S  L  N  S  L  Q  T  K  A  C  N  L  S  S  K  E  G  *  V  H  Y  P  S  S  F  E  P  C  R  P  A  L  G  D  F  *  F  F  C  K  R  I  F  V  D  N  T  L  H  Q  I  I  R  C  C  V  S  L  I  Q  H  P  K  *  L  Y  C  L  Y  A  S  L  N  H  R  I  Q  Y  L  F  G  F  C  N  N  F  G  H  Y  N  I  R  *  V  L  A  L  F  C  Q  Q  :  K  T  K  K  K  </first_frame>
            <second_frame>  *  E  N  T  S  L  L  A  V  A  R  R  T  A  V  S  R  T  A  G  G  D  S  I  C  C  R  K  S  Q   : T  C  D  H  N  L  L  D  E  M  L  M  M   : Y  F  L  I :   L  K  Q  G  S  T  I  S  T  T  N  L  G  P  S  F  T  *  D  V  F  V  *  T  S  T  S  S  T  S  A  E  *  R  L  V  Y  E  K  C  S  T  N  F  A  P  H  K  C  F  P  P  *  W  W  C  T  G  T  N  R  H  Q  W  L  W  *  I  H  I  L  A  H  V  G  W  F  L  K  T  I  S  W  *  D  T  L  E  W  P  *  H  Y  *  F  R  C  F  S  T  V  Q  T  S  T  Q  L  A  V  S  *  G  R  H  Q  R  E  V  H  G  P  *  Q  C  S  M  V  *  S  S  *  R  Q  A  R  E  V  A  A  S  F  G  T  Y  G  A  W  K  I  S  K  R  *  S  T  D  A  F  Y  G  S  K  E  K  G  T  A  R  Q  I  V  S  N  *  S  T  Y  L  V  A  *  *  T  F  S  S  I  G  *  R  R  C  E  I  A  R  V  Y  Y  C  R  A  Q  E  K  R  W  Y  C  H  C  R  H  P  S  A  Y  S  D  R  G  C  N  V  F  K  V  A  T  K  V  P  *  K  D  D  F  S  R  H  A  *  *  R  R  P  R  L  I  I  K  K  I  K  S  P  I  *  R  S  S  P  M  N  S  K  G  S  C  F  L  F  H  S  *  *  L  Q  E  F  L  Y  L  Y  F  V  S  S  S  S  I  C  T  S  L  C  P  *  N  V  L  R  T  H  A  L  I  G  L  M  V  *  T  A  T  L  D  V  W  I  R  R  M  S  R  V  *  I  R  C  R  Q  K  L  V  I  *  A  A  R  R  G  K  F  I  I  H  R  V  S  N  P  V  G  R  H  S  G  I  S  S  F  F  V  K  E  F  L  *  I  T  P  C  I  R  L  S  D  V  A  F  L  L  Y  N  I  P  N  S  F  I  V  C  M  L  V  *  T  T  E  F  S  T  Y  L  A  F  V  T  T  L  D  I  T  I  *  D  K  S  *  L  C  F  V  S  K :   K  Q  K  K  K </second_frame>
            <third_frame>   E  K  I  L  H  C  *  L  *  L  D  G  R  R  *  A  E  R  P  E  V  I  P  F  A  V  E  N  H  K  :  L  V  I  I  T  C  W  M  K  C  L  *  C  :  I  F  *   : S  S  N  K  E  V  L  Y  L  L  L  I  L  V  L  H  S  L  E  M  S  L  C  R  P  P  L  P  R  L  L  L  N  N  V  S  C  M  R  N  A  Q  Q  I  L  R  H  I  N  V  S  L  H  D  G  G  A  L  V  L  T  G  T  N  G  S  G  K  S  T  F  L  R  M  L  A  G  F  S  K  P  S  A  G  E  I  L  W  N  G  H  D  I  T  D  S  G  V  F  Q  Q  Y  K  L  Q  L  N  W  L  S  L  K  D  A  I  K  E  K  F  T  V  L  D  N  V  Q  W  F  E  V  L  E  G  K  Q  G  K  S  L  P  A  L  E  L  M  G  L  G  R  L  V  N  D  K  A  R  M  L  S  M  G  Q  R  K  R  V  Q  L  A  R  L  L  A  I  D  R  P  I  W  L  L  D  E  P  S  V  A  L  D  D  E  G  V  K  L  L  E  Y  I  I  A  E  H  R  K  K  G  G  I  V  I  V  A  T  H  L  P  I  Q  I  E  D  A  M  F  L  R  L  P  P  R  F  P  R  R  M  T  L  V  D  M  L  D  R  G  G  L  D  *  S  L  R  R  *  R  V  Q  S  K  E  A  L  Q  *  I  Q  K  G  A  V  F  S  F  I  L  D  D  C  K  N  F  S  I  F  T  L  L  A  P  P  Q  F  A  L  H  F  A  P  K  M  C  *  E  H  M  P  S  L  V  *  W  Y  E  R  Q  H  W  M  C  G  L  D  E  C  H  E  F  E  F  V  A  D  K  S  L  *  F  K  Q  Q  G  G  V  S  S  L  S  I  E  F  R  T  L  S  A  G  T  R  G  F  L  V  F  L  *  K  N  F  C  R  *  H  L  A  S  D  Y  Q  M  L  R  F  S  Y  T  T  S  Q  I  A  L  L  F  V  C  *  F  E  P  Q  N  S  V  L  I  W  L  L  *  Q  L  W  T  L  Q  Y  K  I  S  L  S  F  V  L  S  A   : K  N  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42670" stop="44428"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSNKEVLYLLLILVLHSLEMSLCRPPLPRLLLNNVSCMRNAQQILRHINVSLHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITDSGVFQQYKLQLNWLSLKDAIKEKFTVLDNVQWFEVLEGKQGKSLPALELMGLGRLVNDKARMLSMGQRKRVQLARLLAIDRPIWLLDEPSVALDDEGVKLLEYIIAEHRKKGGIVIVATHLPIQIEDAMFLRLPPRFPRRMTLVDMLDRGGLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="44773" e_stop="44942"/>
            <exon e_start="45537" e_stop="45548"/>
            <exon e_start="45643" e_stop="45664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.925" e_score="0.976"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.667"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="44773" e_stop="44942" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.925">
            <gDNA_intron_boundary i_start="44943" i_stop="45536" i_length="594"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="45537" e_stop="45548" e_length="12"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45549" i_stop="45642" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.909">
            <gDNA_exon_boundary e_start="45643" e_stop="45664" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44773" stop="44942"/>
              <exon start="45537" stop="45548"/>
              <exon start="45643" stop="45664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277232" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAAAGAATTTTTGTAGATAACACCTTGCATCAGATTATCAGATGTTGCGTTTCTCTTATACAACATCCCAAATAGCTTTATTGTTTGTATGCTAGTTTGAACCACAGAATTCAGTACTTATTTGGCTTTTGTAACAACTTTGGACATTACAATATAAGATAAGTCTTA : AAAAATCACGTG : TCTGCAAAAAAAAAAAAAACAA</gDNA_template>
            <first_frame> V  K  E  F  L  *  I  T  P  C  I  R  L  S  D  V  A  F  L  L  Y  N  I  P  N  S  F  I  V  C  M  L  V  *  T  T  E  F  S  T  Y  L  A  F  V  T  T  L  D  I  T  I  *  D  K  S  * :   K  I  T  C :   L  Q  K  K  K  K  Q </first_frame>
            <second_frame>  *  K  N  F  C  R  *  H  L  A  S  D  Y  Q  M  L  R  F  S  Y  T  T  S  Q  I  A  L  L  F  V  C  *  F  E  P  Q  N  S  V  L  I  W  L  L  *  Q  L  W  T  L  Q  Y  K  I  S  L   : K  K  S  R   : V  C  K  K  K  K  N   </second_frame>
            <third_frame>   K  R  I  F  V  D  N  T  L  H  Q  I  I  R  C  C  V  S  L  I  Q  H  P  K  *  L  Y  C  L  Y  A  S  L  N  H  R  I  Q  Y  L  F  G  F  C  N  N  F  G  H  Y  N  I  R  *  V  L  :  K  N  H  V  :  S  A  K  K  K  K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0072J06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="45682" PGL_stop="48122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45682" e_stop="45898"/>
            <exon e_start="47007" e_stop="47090"/>
            <exon e_start="47605" e_stop="47639"/>
            <exon e_start="47764" e_stop="47831"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.841" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.700" e_score="0.988"/>
          <exon-intron don_prob="0.932" acc_prob="0.817" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45682" e_stop="45898" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.841">
            <gDNA_intron_boundary i_start="45899" i_stop="47006" i_length="1108"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="47007" e_stop="47090" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.700">
            <gDNA_intron_boundary i_start="47091" i_stop="47604" i_length="514"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47605" e_stop="47639" e_length="35"/>
          </exon>
          <intron i_serial="3" don_prob="0.932" acc_prob="0.817">
            <gDNA_intron_boundary i_start="47640" i_stop="47763" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47764" e_stop="47831" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45682" stop="45898"/>
              <exon start="47007" stop="47090"/>
              <exon start="47605" stop="47639"/>
              <exon start="47764" stop="47831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317709" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGTTTTATTGAAAAATGATGAAGAAATCATGGGTTTGTACTTTGATTACTCAATTTTGTTTATGTTTGTCTCTTTTTCTTGTTCTTAACTTGTGTCAAAATCAGAAGCCAATGATAAGGAATGGAAATGTGAATGATCTTCCCATGGATATATATTTTATAAGTGTTACAGGGGGTATTAGAACTCTTGAAGAGCAGACCCTTCTTCTCAAACAG : GTGGAGAAGGTAGCAAAAAAGTTCAATGCAAGATTCGTTATCAACATAAGCGAACTTGGGGAAGATGATCCTCTTATGCAAAAT : GCTACTTGGCGTTTTCCTTCCGTGAAGATCCCCTG : GTACTCTACTCGAGCTCTCGAAGGACAAGGGGTGAATCACTACCTTAAACAATTCAAATTTGCACATG</gDNA_template>
            <first_frame> W  V  L  L  K  N  D  E  E  I  M  G  L  Y  F  D  Y  S  I  L  F  M  F  V  S  F  S  C  S  *  L  V  S  K  S  E  A  N  D  K  E  W  K  C  E  *  S  S  H  G  Y  I  F  Y  K  C  Y  R  G  Y  *  N  S  *  R  A  D  P  S  S  Q  T   : G  G  E  G  S  K  K  V  Q  C  K  I  R  Y  Q  H  K  R  T  W  G  R  *  S  S  Y  A  K   : C  Y  L  A  F  S  F  R  E  D  P  L  :  V  L  Y  S  S  S  R  R  T  R  G  E  S  L  P  *  T  I  Q  I  C  T   </first_frame>
            <second_frame>  G  F  Y  *  K  M  M  K  K  S  W  V  C  T  L  I  T  Q  F  C  L  C  L  S  L  F  L  V  L  N  L  C  Q  N  Q  K  P  M  I  R  N  G  N  V  N  D  L  P  M  D  I  Y  F  I  S  V  T  G  G  I  R  T  L  E  E  Q  T  L  L  L  K  Q  :  V  E  K  V  A  K  K  F  N  A  R  F  V  I  N  I  S  E  L  G  E  D  D  P  L  M  Q  N  :  A  T  W  R  F  P  S  V  K  I  P  W :   Y  S  T  R  A  L  E  G  Q  G  V  N  H  Y  L  K  Q  F  K  F  A  H  </second_frame>
            <third_frame>   G  F  I  E  K  *  *  R  N  H  G  F  V  L  *  L  L  N  F  V  Y  V  C  L  F  F  L  F  L  T  C  V  K  I  R  S  Q  *  *  G  M  E  M  *  M  I  F  P  W  I  Y  I  L  *  V  L  Q  G  V  L  E  L  L  K  S  R  P  F  F  S  N  R :   W  R  R  *  Q  K  S  S  M  Q  D  S  L  S  T  *  A  N  L  G  K  M  I  L  L  C  K  M :   L  L  G  V  F  L  P  *  R  S  P   : G  T  L  L  E  L  S  K  D  K  G  *  I  T  T  L  N  N  S  N  L  H  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45695" stop="45898"/>
                    <exon start="47007" stop="47090"/>
                    <exon start="47605" stop="47639"/>
                    <exon start="47764" stop="47830"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMMKKSWVCTLITQFCLCLSLFLVLNLCQNQKPMIRNGNVNDLPMDIYFISVTGGIRTLEEQTLLLKQVEKVAKKFNARFVINISELGEDDPLMQNATWRFPSVKIPWYSTRALEGQGVNHYLKQFKFAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45702" e_stop="45715"/>
            <exon e_start="45788" e_stop="45898"/>
            <exon e_start="47007" e_stop="47090"/>
            <exon e_start="47605" e_stop="47639"/>
            <exon e_start="47747" e_stop="48122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.774" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.841" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.700" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.705" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45702" e_stop="45715" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.774" acc_prob="0.991">
            <gDNA_intron_boundary i_start="45716" i_stop="45787" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45788" e_stop="45898" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.841">
            <gDNA_intron_boundary i_start="45899" i_stop="47006" i_length="1108"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47007" e_stop="47090" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.700">
            <gDNA_intron_boundary i_start="47091" i_stop="47604" i_length="514"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47605" e_stop="47639" e_length="35"/>
          </exon>
          <intron i_serial="4" don_prob="0.932" acc_prob="0.705">
            <gDNA_intron_boundary i_start="47640" i_stop="47746" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47747" e_stop="48122" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45702" stop="45715"/>
              <exon start="45788" stop="45898"/>
              <exon start="47007" stop="47090"/>
              <exon start="47605" stop="47639"/>
              <exon start="47747" stop="48122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326267" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAGAAATCATGG : AAGCCAATGATAAGGAATGGAAATGTGAATGATCTTCCCATGGATATATATTTTATAAGTGTTACAGGGGGTATTAGAACTCTTGAAGAGCAGACCCTTCTTCTCAAACAG : GTGGAGAAGGTAGCAAAAAAGTTCAATGCAAGATTCGTTATCAACATAAGCGAACTTGGGGAAGATGATCCTCTTATGCAAAAT : GCTACTTGGCGTTTTCCTTCCGTGAAGATCCCCTG : CCATCCTAAACTTGTAGGTACTCTACTCGAGCTCTCGAAGGACAAGGGGTGAATCACTACCTTAAACAATTCAAATTTGCACATGGAAGCTTAGATATTATAGTTGTAGATACAGGATTATATGAGGTAAATGTTTCTTTTTTATCTGATTACTTGGCCTTTTACGCACGTTACCAAGATGGTGTCACTTCAGCTTTCTGCTCACTTGATTGTCACCTATCGTCTTTGTAAGATATATATTGTATTTTTCTATATAATGTTTTACCTAACCCGCTCCTGATAAGTCTGTAGCTTATGTGTTGGTTTTATCTCTGGAAGTTCAGAAAATTTATTCCAAAGACCCTTGGTTACATCAAATATGATGGCATGTCATTTG</gDNA_template>
            <first_frame> *  R  N  H  G :   S  Q  *  *  G  M  E  M  *  M  I  F  P  W  I  Y  I  L  *  V  L  Q  G  V  L  E  L  L  K  S  R  P  F  F  S  N  R :   W  R  R  *  Q  K  S  S  M  Q  D  S  L  S  T  *  A  N  L  G  K  M  I  L  L  C  K  M :   L  L  G  V  F  L  P  *  R  S  P   : A  I  L  N  L  *  V  L  Y  S  S  S  R  R  T  R  G  E  S  L  P  *  T  I  Q  I  C  T  W  K  L  R  Y  Y  S  C  R  Y  R  I  I  *  G  K  C  F  F  F  I  *  L  L  G  L  L  R  T  L  P  R  W  C  H  F  S  F  L  L  T  *  L  S  P  I  V  F  V  R  Y  I  L  Y  F  S  I  *  C  F  T  *  P  A  P  D  K  S  V  A  Y  V  L  V  L  S  L  E  V  Q  K  I  Y  S  K  D  P  W  L  H  Q  I  *  W  H  V  I   </first_frame>
            <second_frame>  E  E  I  M   : E  A  N  D  K  E  W  K  C  E  *  S  S  H  G  Y  I  F  Y  K  C  Y  R  G  Y  *  N  S  *  R  A  D  P  S  S  Q  T   : G  G  E  G  S  K  K  V  Q  C  K  I  R  Y  Q  H  K  R  T  W  G  R  *  S  S  Y  A  K   : C  Y  L  A  F  S  F  R  E  D  P  L  :  P  S  *  T  C  R  Y  S  T  R  A  L  E  G  Q  G  V  N  H  Y  L  K  Q  F  K  F  A  H  G  S  L  D  I  I  V  V  D  T  G  L  Y  E  V  N  V  S  F  L  S  D  Y  L  A  F  Y  A  R  Y  Q  D  G  V  T  S  A  F  C  S  L  D  C  H  L  S  S  L  *  D  I  Y  C  I  F  L  Y  N  V  L  P  N  P  L  L  I  S  L  *  L  M  C  W  F  Y  L  W  K  F  R  K  F  I  P  K  T  L  G  Y  I  K  Y  D  G  M  S  F  </second_frame>
            <third_frame>   K  K  S  W  :  K  P  M  I  R  N  G  N  V  N  D  L  P  M  D  I  Y  F  I  S  V  T  G  G  I  R  T  L  E  E  Q  T  L  L  L  K  Q  :  V  E  K  V  A  K  K  F  N  A  R  F  V  I  N  I  S  E  L  G  E  D  D  P  L  M  Q  N  :  A  T  W  R  F  P  S  V  K  I  P  C :   H  P  K  L  V  G  T  L  L  E  L  S  K  D  K  G  *  I  T  T  L  N  N  S  N  L  H  M  E  A  *  I  L  *  L  *  I  Q  D  Y  M  R  *  M  F  L  F  Y  L  I  T  W  P  F  T  H  V  T  K  M  V  S  L  Q  L  S  A  H  L  I  V  T  Y  R  L  C  K  I  Y  I  V  F  F  Y  I  M  F  Y  L  T  R  S  *  *  V  C  S  L  C  V  G  F  I  S  G  S  S  E  N  L  F  Q  R  P  L  V  T  S  N  M  M  A  C  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45704" stop="45715"/>
                    <exon start="45788" stop="45898"/>
                    <exon start="47007" stop="47090"/>
                    <exon start="47605" stop="47639"/>
                    <exon start="47747" stop="47798"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSWKPMIRNGNVNDLPMDIYFISVTGGIRTLEEQTLLLKQVEKVAKKFNARFVINISELGEDDPLMQNATWRFPSVKIPCHPKLVGTLLELSKDKG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47756" stop="47977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCRYSTRALEGQGVNHYLKQFKFAHGSLDIIVVDTGLYEVNVSFLSDYLAFYARYQDGVTSAFCSLDCHLSSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="48780" PGL_stop="50324"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48780" e_stop="48853"/>
            <exon e_start="48941" e_stop="49052"/>
            <exon e_start="49407" e_stop="49537"/>
            <exon e_start="49745" e_stop="49793"/>
            <exon e_start="49881" e_stop="50324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.409" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.682" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.134" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.829" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48780" e_stop="48853" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.409" acc_prob="0.976">
            <gDNA_intron_boundary i_start="48854" i_stop="48940" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48941" e_stop="49052" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.682" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49053" i_stop="49406" i_length="354"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49407" e_stop="49537" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.134" acc_prob="0.981">
            <gDNA_intron_boundary i_start="49538" i_stop="49744" i_length="207"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49745" e_stop="49793" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.829">
            <gDNA_intron_boundary i_start="49794" i_stop="49880" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49881" e_stop="50324" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48780" stop="48853"/>
              <exon start="48941" stop="49052"/>
              <exon start="49407" stop="49537"/>
              <exon start="49745" stop="49793"/>
              <exon start="49881" stop="50324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48780" stop="48853"/>
              <exon start="48941" stop="49052"/>
              <exon start="49407" stop="49537"/>
              <exon start="49745" stop="49793"/>
              <exon start="49881" stop="50296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48780" stop="48853"/>
              <exon start="48941" stop="49052"/>
              <exon start="49407" stop="49537"/>
              <exon start="49745" stop="49793"/>
              <exon start="49881" stop="50144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737743" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGCTTCAAATGGTGCTGGAGATAGTCAGTCACAATGGCTGATAGACACACTTGAAAACAGTGAAAGCAAATG : GTGCATTGCTGTTGGATTTCATCCATTGGTAGTTTGCGAAGAAGATGCTCCTCAAACAAAACTAAAACACAAATTCCAGTCTTTACATGGCCTATTTCTGAAGTATGGTGTG : GATGCATATATCAGTGCCCCTGTTTGTGCTGACAATGTTGAGGAAAGACATATTGCAAAATCCAAAACTAGTATTGGCAGATATAAAGGACCTTTGCTGACTAAAGTGAATCAGAACTTGCCTTGCTCTAT : GGGAAGAGTAGATGGATTCCTACTTCACAAAGCCAGTGCTTTAGAGATT : GTTTCCTATTTAGTCACCTTGGAAGGTGATGTTGTGCAGAAATTTTTTCTCCATCAAAGAGGCAAAGATGTTATGTAGATATTCCTAAAGCTTCAAACATCATTTAGGGGAGCCATTTGCTTCAGATCGCCTTTTTTCGTTCTAGTTGTCGTCGTGGAAAAGAATGAAAGAAGATCATAGATTTAATTAAATATTAGTGAAGAATCGTAATTCTCGTCTTCGTTCTCTTTTTTTTTTCCCTTTGCAGAGTAAGGGAAAATGAATTACGAAAGAAGCAGATTCAGTACTGTGCTCAAGTTTGAACTAATAGATTCAACGTTTATACTCAAGTTGAAATTCACATCTTTTGTACGATACTGATGTTCATTTTGAATATCACTGGATCCTTTCCAAATTTTATTGAGATGTTTATGCTAATAGAGCGAATGTGTTATTCTATATTAT</gDNA_template>
            <first_frame> V  A  S  N  G  A  G  D  S  Q  S  Q  W  L  I  D  T  L  E  N  S  E  S  K  W :   C  I  A  V  G  F  H  P  L  V  V  C  E  E  D  A  P  Q  T  K  L  K  H  K  F  Q  S  L  H  G  L  F  L  K  Y  G  V  :  D  A  Y  I  S  A  P  V  C  A  D  N  V  E  E  R  H  I  A  K  S  K  T  S  I  G  R  Y  K  G  P  L  L  T  K  V  N  Q  N  L  P  C  S  M :   G  R  V  D  G  F  L  L  H  K  A  S  A  L  E  I  :  V  S  Y  L  V  T  L  E  G  D  V  V  Q  K  F  F  L  H  Q  R  G  K  D  V  M  *  I  F  L  K  L  Q  T  S  F  R  G  A  I  C  F  R  S  P  F  F  V  L  V  V  V  V  E  K  N  E  R  R  S  *  I  *  L  N  I  S  E  E  S  *  F  S  S  S  F  S  F  F  F  P  F  A  E  *  G  K  M  N  Y  E  R  S  R  F  S  T  V  L  K  F  E  L  I  D  S  T  F  I  L  K  L  K  F  T  S  F  V  R  Y  *  C  S  F  *  I  S  L  D  P  F  Q  I  L  L  R  C  L  C  *  *  S  E  C  V  I  L  Y  Y </first_frame>
            <second_frame>  L  L  Q  M  V  L  E  I  V  S  H  N  G  *  *  T  H  L  K  T  V  K  A  N   : G  A  L  L  L  D  F  I  H  W  *  F  A  K  K  M  L  L  K  Q  N  *  N  T  N  S  S  L  Y  M  A  Y  F  *  S  M  V  W :   M  H  I  S  V  P  L  F  V  L  T  M  L  R  K  D  I  L  Q  N  P  K  L  V  L  A  D  I  K  D  L  C  *  L  K  *  I  R  T  C  L  A  L   : W  E  E  *  M  D  S  Y  F  T  K  P  V  L  *  R  L :   F  P  I  *  S  P  W  K  V  M  L  C  R  N  F  F  S  I  K  E  A  K  M  L  C  R  Y  S  *  S  F  K  H  H  L  G  E  P  F  A  S  D  R  L  F  S  F  *  L  S  S  W  K  R  M  K  E  D  H  R  F  N  *  I  L  V  K  N  R  N  S  R  L  R  S  L  F  F  F  P  L  Q  S  K  G  K  *  I  T  K  E  A  D  S  V  L  C  S  S  L  N  *  *  I  Q  R  L  Y  S  S  *  N  S  H  L  L  Y  D  T  D  V  H  F  E  Y  H  W  I  L  S  K  F  Y  *  D  V  Y  A  N  R  A  N  V  L  F  Y  I   </second_frame>
            <third_frame>   C  F  K  W  C  W  R  *  S  V  T  M  A  D  R  H  T  *  K  Q  *  K  Q  M  :  V  H  C  C  W  I  S  S  I  G  S  L  R  R  R  C  S  S  N  K  T  K  T  Q  I  P  V  F  T  W  P  I  S  E  V  W  C   : G  C  I  Y  Q  C  P  C  L  C  *  Q  C  *  G  K  T  Y  C  K  I  Q  N  *  Y  W  Q  I  *  R  T  F  A  D  *  S  E  S  E  L  A  L  L  Y  :  G  K  S  R  W  I  P  T  S  Q  S  Q  C  F  R  D   : C  F  L  F  S  H  L  G  R  *  C  C  A  E  I  F  S  P  S  K  R  Q  R  C  Y  V  D  I  P  K  A  S  N  I  I  *  G  S  H  L  L  Q  I  A  F  F  R  S  S  C  R  R  G  K  E  *  K  K  I  I  D  L  I  K  Y  *  *  R  I  V  I  L  V  F  V  L  F  F  F  S  L  C  R  V  R  E  N  E  L  R  K  K  Q  I  Q  Y  C  A  Q  V  *  T  N  R  F  N  V  Y  T  Q  V  E  I  H  I  F  C  T  I  L  M  F  I  L  N  I  T  G  S  F  P  N  F  I  E  M  F  M  L  I  E  R  M  C  Y  S  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48780" stop="48853"/>
                    <exon start="48941" stop="49052"/>
                    <exon start="49407" stop="49537"/>
                    <exon start="49745" stop="49793"/>
                    <exon start="49881" stop="49958"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VASNGAGDSQSQWLIDTLENSESKWCIAVGFHPLVVCEEDAPQTKLKHKFQSLHGLFLKYGVDAYISAPVCADNVEERHIAKSKTSIGRYKGPLLTKVNQNLPCSMGRVDGFLLHKASALEIVSYLVTLEGDVVQKFFLHQRGKDVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="53984" PGL_stop="53343"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53984" e_stop="53343"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="53984" e_stop="53343" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53984" stop="53395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53984" stop="53395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53771" stop="53343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAACTCCACCTATTTGATGTTAGACACAGCGGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTAAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACCTTGATTTGAGTAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAGGGATTTGTTTACGATATATGTAAGTAAGTATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCTGACTCATCTGATTCTTCTGGTAGTGGCATTTC</gDNA_template>
            <first_frame> R  M  *  *  D  V  V  F  R  C  A  Y  *  V  E  L  H  L  F  D  V  R  H  S  G  K  V  *  E  G  F  *  E  V  *  S  L  *  W  *  F  *  F  F  S  C  Y  *  C  L  *  R  W  K  Y  R  R  V  N  S  I  *  R  L  G  *  C  E  E  C  H  K  V  S  *  K  I  L  *  T  H  F  E  S  F  R  F  T  V  C  Y  L  *  C  S  F  *  R  Y  M  *  T  *  C  L  F  E  I  M  C  S  K  *  *  P  *  F  E  *  N  G  F  G  N  E  R  K  I  Q  E  I  L  G  D  S  *  K  N  E  Q  N  D  F  Y  C  F  C  F  G  S  S  Q  *  I  C  L  C  *  F  C  S  *  R  I  T  W  G  R  N  G  K  C  S  E  Y  E  S  R  G  L  L  E  G  F  V  Y  D  I  C  K  *  V  W  K  R  F  Q  K  S  T  I  F  I  *  L  I  *  F  F  W  *  W  H  F </first_frame>
            <second_frame>  E  C  D  K  M  L  S  L  D  V  P  T  R  W  N  S  T  Y  L  M  L  D  T  A  E  K  F  E  K  A  F  E  R  F  D  L  Y  D  G  N  F  N  S  F  L  A  T  D  V  C  E  D  G  S  I  A  G  S  I  Q  Y  E  D  W  A  N  V  R  N  V  T  K  F  L  E  K  F  Y  E  L  T  L  K  V  S  G  S  R  Y  V  T  C  N  V  H  F  E  D  I  C  K  L  D  A  Y  L  K  L  C  V  A  S  D  D  L  D  L  S  K  M  A  S  G  M  K  E  K  F  K  K  Y  W  G  T  P  E  K  M  N  K  M  I  F  I  A  S  V  L  D  P  R  N  K  F  V  Y  V  S  F  A  L  E  E  L  L  G  E  E  T  G  N  V  V  N  T  K  V  E  A  Y  L  R  D  L  F  T  I  Y  V  S  K  Y  G  K  G  S  K  S  Q  P  S  S  S  D  S  S  D  S  S  G  S  G  I   </second_frame>
            <third_frame>   N  V  I  R  C  C  L  *  M  C  L  L  G  G  T  P  P  I  *  C  *  T  Q  R  K  S  L  R  R  L  L  R  G  L  I  F  M  M  V  I  L  I  L  F  L  L  L  M  F  V  K  M  E  V  S  Q  G  Q  F  N  M  K  I  G  L  M  *  G  M  S  Q  S  F  L  K  N  F  M  N  S  L  *  K  F  Q  V  H  G  M  L  L  V  M  F  I  L  K  I  Y  V  N  L  M  L  I  *  N  Y  V  *  Q  V  M  T  L  I  *  V  K  W  L  R  E  *  K  K  N  S  R  N  I  G  G  L  L  K  K  *  T  K  *  F  L  L  L  L  F  W  I  L  A  I  N  L  S  M  L  V  L  L  L  K  N  Y  L  G  K  K  R  E  M  *  *  I  R  K  *  R  L  T  *  G  I  C  L  R  Y  M  *  V  S  M  E  K  V  P  K  V  N  H  L  H  L  T  H  L  I  L  L  V  V  A  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53983" stop="53345"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ECDKMLSLDVPTRWNSTYLMLDTAEKFEKAFERFDLYDGNFNSFLATDVCEDGSIAGSIQYEDWANVRNVTKFLEKFYELTLKVSGSRYVTCNVHFEDICKLDAYLKLCVASDDLDLSKMASGMKEKFKKYWGTPEKMNKMIFIASVLDPRNKFVYVSFALEELLGEETGNVVNTKVEAYLRDLFTIYVSKYGKGSKSQPSSSDSSDSSGSGI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="69832" PGL_stop="70096"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69832" e_stop="70096"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="69832" e_stop="70096" e_length="265"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69832" stop="70096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69858" stop="70096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220859" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTGTATGTGTGAGAGTGTGTCTCTTTTTTCAGATAAAGCAGCAGCAAAAGCATTGAAAAGGGACAGTTAGTGGACTTACAGGGTCTCTGTTTAAATTGTCTCTTATAAATCAGAGTATTCTAGGGGAATTAGTAGCTTAGTAGGATGGTTGGCTTATGAATACCTGGACTTTCACCTTGTTGGTGAGGGTTCAATTCTCCACCTTGTAATCCCCTCCCCCTTTCCGCTTCGGCCCAGTTTTTTCAAAAAAAATAAAATAAAAT</gDNA_template>
            <first_frame> M  C  M  C  E  S  V  S  L  F  S  D  K  A  A  A  K  A  L  K  R  D  S  *  W  T  Y  R  V  S  V  *  I  V  S  Y  K  S  E  Y  S  R  G  I  S  S  L  V  G  W  L  A  Y  E  Y  L  D  F  H  L  V  G  E  G  S  I  L  H  L  V  I  P  S  P  F  P  L  R  P  S  F  F  K  K  N  K  I  K  </first_frame>
            <second_frame>  C  V  C  V  R  V  C  L  F  F  Q  I  K  Q  Q  Q  K  H  *  K  G  T  V  S  G  L  T  G  S  L  F  K  L  S  L  I  N  Q  S  I  L  G  E  L  V  A  *  *  D  G  W  L  M  N  T  W  T  F  T  L  L  V  R  V  Q  F  S  T  L  *  S  P  P  P  F  R  F  G  P  V  F  S  K  K  I  K  *  N </second_frame>
            <third_frame>   V  Y  V  *  E  C  V  S  F  F  R  *  S  S  S  K  S  I  E  K  G  Q  L  V  D  L  Q  G  L  C  L  N  C  L  L  *  I  R  V  F  *  G  N  *  *  L  S  R  M  V  G  L  *  I  P  G  L  S  P  C  W  *  G  F  N  S  P  P  C  N  P  L  P  L  S  A  S  A  Q  F  F  Q  K  K  *  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0072J06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="77112" PGL_stop="78303"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77112" e_stop="78303"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="77112" e_stop="78303" e_length="1192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77112" stop="77807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77112" stop="77689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77112" stop="77608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77112" stop="77551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77112" stop="77455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77112" stop="77315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77128" stop="77643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77177" stop="77689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77562" stop="78303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334381" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTCACCCTAGTTTACTGCATTGAGAAAACCTGAACCGTATCTTGGCAGGGCGACTAGGTATGGCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAGCTTTAAGGCTCCGTGAGATATGGGAACTATCTTACTGGACTATTAATGCTTGCAGCCATGCGCCCATGTCCATTGTTTAGCTTTTTGAATGACAAAAGGCAAATCTGAGCCTCCAAGTATATCTCTGTGTTCAGTAAATGAGGCATTTTATTGAACTCGAGAAAGGTAGTGATTTTCTGAGGGTGGTTATTCTCTTTTCTCTTAAGTTCAATTTAGCCAATGAAGTTTCCTATGCTTTTGTTAGACAGATATAGTTTAACAGCCCTCTCATCAGCAAAATGTTCTTGATGATGACGATGATTGCCATGGTTATGATAATAATAATATTAATAATAAGCAAAATTACGTTTCCCCCCTCAACTTTTCTAGAAAAACCCAAATCCTCAACCCTAAACTTTGTGATGAGGCTGTGATGATATTCTCCAGGAAGTTTGAAAATCAGATTTTTAAGCTGATTCATATCTTGGCTAGGCAAAGGCAGGGGAATTCATGAGGCTGGTTCTTACGTGCTCTGTCACACGTATCTGCTTTTTGCAGCCATGGTGAAGTAGCCCTTTTTTTCTGATTGATTTTCACTCAAAATCTGAGCCTCTTTTCTGTTTAAAGTTTTGGTTCTACAATATGTAGTCTTTTTTTTTCATCCTTCGTACTATCAGCACATATAGGAAGAGTCCCCTTTGAGAAATGAAACTTCCTATGTATCCCTCTATACAATTTCCATAGATTGTTAGGTACACTGAGATGAAATAAGTCCAAAGGGAATGGAAGTGGATATTTAGGATCCATATAATGTCTTTAAACAGTTTGATATTGAAGCTGGTTTTTGCTGCATTTATCTACACTACTCAAACTTTCATGCCTTTTTAGATCCTGAATGCACCAAGTTTTCCAAGGCAATGAAGATGTCATATTGAAAATGAAAATGTGAATAAGATGAGAGTTGATTCATGGCCTGGCTTGGCCAAGTCCAATTGGAAGGTCTTGTAAG</gDNA_template>
            <first_frame> *  F  T  L  V  Y  C  I  E  K  T  *  T  V  S  W  Q  G  D  *  V  W  H  H  L  Q  T  G  V  C  S  H  G  V  V  L  F  S  L  H  V  H  A  Q  Q  N  I  S  P  K  V  C  G  *  Y  L  K  R  S  L  N  *  W  G  L  A  W  Q  L  *  G  S  V  R  Y  G  N  Y  L  T  G  L  L  M  L  A  A  M  R  P  C  P  L  F  S  F  L  N  D  K  R  Q  I  *  A  S  K  Y  I  S  V  F  S  K  *  G  I  L  L  N  S  R  K  V  V  I  F  *  G  W  L  F  S  F  L  L  S  S  I  *  P  M  K  F  P  M  L  L  L  D  R  Y  S  L  T  A  L  S  S  A  K  C  S  *  *  *  R  *  L  P  W  L  *  *  *  *  Y  *  *  *  A  K  L  R  F  P  P  Q  L  F  *  K  N  P  N  P  Q  P  *  T  L  *  *  G  C  D  D  I  L  Q  E  V  *  K  S  D  F  *  A  D  S  Y  L  G  *  A  K  A  G  E  F  M  R  L  V  L  T  C  S  V  T  R  I  C  F  L  Q  P  W  *  S  S  P  F  F  L  I  D  F  H  S  K  S  E  P  L  F  C  L  K  F  W  F  Y  N  M  *  S  F  F  F  I  L  R  T  I  S  T  Y  R  K  S  P  L  *  E  M  K  L  P  M  Y  P  S  I  Q  F  P  *  I  V  R  Y  T  E  M  K  *  V  Q  R  E  W  K  W  I  F  R  I  H  I  M  S  L  N  S  L  I  L  K  L  V  F  A  A  F  I  Y  T  T  Q  T  F  M  P  F  *  I  L  N  A  P  S  F  P  R  Q  *  R  C  H  I  E  N  E  N  V  N  K  M  R  V  D  S  W  P  G  L  A  K  S  N  W  K  V  L  *  </first_frame>
            <second_frame>  N  S  P  *  F  T  A  L  R  K  P  E  P  Y  L  G  R  A  T  R  Y  G  I  I  C  K  L  V  S  A  A  M  A  L  S  F  S  L  C  M  F  M  H  N  K  I  *  V  L  K  S  V  V  N  I  S  K  G  H  S  T  D  G  D  W  H  G  S  F  K  A  P  *  D  M  G  T  I  L  L  D  Y  *  C  L  Q  P  C  A  H  V  H  C  L  A  F  *  M  T  K  G  K  S  E  P  P  S  I  S  L  C  S  V  N  E  A  F  Y  *  T  R  E  R  *  *  F  S  E  G  G  Y  S  L  F  S  *  V  Q  F  S  Q  *  S  F  L  C  F  C  *  T  D  I  V  *  Q  P  S  H  Q  Q  N  V  L  D  D  D  D  D  C  H  G  Y  D  N  N  N  I  N  N  K  Q  N  Y  V  S  P  L  N  F  S  R  K  T  Q  I  L  N  P  K  L  C  D  E  A  V  M  I  F  S  R  K  F  E  N  Q  I  F  K  L  I  H  I  L  A  R  Q  R  Q  G  N  S  *  G  W  F  L  R  A  L  S  H  V  S  A  F  C  S  H  G  E  V  A  L  F  F  *  L  I  F  T  Q  N  L  S  L  F  S  V  *  S  F  G  S  T  I  C  S  L  F  F  S  S  F  V  L  S  A  H  I  G  R  V  P  F  E  K  *  N  F  L  C  I  P  L  Y  N  F  H  R  L  L  G  T  L  R  *  N  K  S  K  G  N  G  S  G  Y  L  G  S  I  *  C  L  *  T  V  *  Y  *  S  W  F  L  L  H  L  S  T  L  L  K  L  S  C  L  F  R  S  *  M  H  Q  V  F  Q  G  N  E  D  V  I  L  K  M  K  M  *  I  R  *  E  L  I  H  G  L  A  W  P  S  P  I  G  R  S  C  K </second_frame>
            <third_frame>   I  H  P  S  L  L  H  *  E  N  L  N  R  I  L  A  G  R  L  G  M  A  S  F  A  N  W  C  L  Q  P  W  R  C  P  F  L  F  A  C  S  C  T  T  K  Y  K  S  *  S  L  W  L  I  S  Q  K  V  T  Q  L  M  G  I  G  M  A  A  L  R  L  R  E  I  W  E  L  S  Y  W  T  I  N  A  C  S  H  A  P  M  S  I  V  *  L  F  E  *  Q  K  A  N  L  S  L  Q  V  Y  L  C  V  Q  *  M  R  H  F  I  E  L  E  K  G  S  D  F  L  R  V  V  I  L  F  S  L  K  F  N  L  A  N  E  V  S  Y  A  F  V  R  Q  I  *  F  N  S  P  L  I  S  K  M  F  L  M  M  T  M  I  A  M  V  M  I  I  I  I  L  I  I  S  K  I  T  F  P  P  S  T  F  L  E  K  P  K  S  S  T  L  N  F  V  M  R  L  *  *  Y  S  P  G  S  L  K  I  R  F  L  S  *  F  I  S  W  L  G  K  G  R  G  I  H  E  A  G  S  Y  V  L  C  H  T  Y  L  L  F  A  A  M  V  K  *  P  F  F  S  D  *  F  S  L  K  I  *  A  S  F  L  F  K  V  L  V  L  Q  Y  V  V  F  F  F  H  P  S  Y  Y  Q  H  I  *  E  E  S  P  L  R  N  E  T  S  Y  V  S  L  Y  T  I  S  I  D  C  *  V  H  *  D  E  I  S  P  K  G  M  E  V  D  I  *  D  P  Y  N  V  F  K  Q  F  D  I  E  A  G  F  C  C  I  Y  L  H  Y  S  N  F  H  A  F  L  D  P  E  C  T  K  F  S  K  A  M  K  M  S  Y  *  K  *  K  C  E  *  D  E  S  *  F  M  A  W  L  G  Q  V  Q  L  E  G  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77575" stop="77808"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QPSHQQNVLDDDDDCHGYDNNNINNKQNYVSPLNFSRKTQILNPKLCDEAVMIFSRKFENQIFKLIHILARQRQGNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="78548" PGL_stop="79462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78548" e_stop="78751"/>
            <exon e_start="78997" e_stop="79462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.916" e_score="0.995"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="78548" e_stop="78751" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.916">
            <gDNA_intron_boundary i_start="78752" i_stop="78996" i_length="245"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="78997" e_stop="79462" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78548" stop="78751"/>
              <exon start="78997" stop="79462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79124" stop="79462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGTGAATCCGTACCTAAACATGAGTATGTCAGCTAACAGTCCGTTCTACAGTTCTTGTCGCGTCTGGCATTCTTTTCAGGTGAACAATGTTGCATTTCATCTTTGCTGGGTGGCGGACCGGTGTCATTTCAATTGTTGGTGGTACTGATGGTAAAGATTGCTGGCTTTGGTTGAATGAAAATTGGATCCGCCCTCATGAAAAG : TACAAGGAAAAACCAGCTTATATTGAACCTGAGGATGAAGTGTAGACGCCAGTCGGTGACAGAAGAGAATGTAGCTTCAAGAATGAGGCAAGCCCACCCACCCCTCGTGTTGTCGCTGAGCATTGCCAGGGGCCACAACGCCTGTGTATCACATTGCCTCAGCTTCCCTACTTTGCATGAGACCTCAATGATGCAATTCTCTGGTTCTGGCTACTGAAGTTCTGAGATAATGCTTTGTTCTTTAAAATGTTAGCATTTGCTATCAAATGCACCATGTTTGTATTTTTCTTACCCAAGAATGTTTATTAATATGGACAATATTTCTGTTGACAAATTTTGTGCTTTCTTTGACACCAAAGTTTTCATTTTTATCCTCTTGTAATTGCAGCATCAAATTTGGAATATTGTACTATTTGCATTTGATAGTATGTTATATATACTCTATCGTTTCAATTTATTTATCAGA</gDNA_template>
            <first_frame> R  *  I  R  T  *  T  *  V  C  Q  L  T  V  R  S  T  V  L  V  A  S  G  I  L  F  R  *  T  M  L  H  F  I  F  A  G  W  R  T  G  V  I  S  I  V  G  G  T  D  G  K  D  C  W  L  W  L  N  E  N  W  I  R  P  H  E  K  :  Y  K  E  K  P  A  Y  I  E  P  E  D  E  V  *  T  P  V  G  D  R  R  E  C  S  F  K  N  E  A  S  P  P  T  P  R  V  V  A  E  H  C  Q  G  P  Q  R  L  C  I  T  L  P  Q  L  P  Y  F  A  *  D  L  N  D  A  I  L  W  F  W  L  L  K  F  *  D  N  A  L  F  F  K  M  L  A  F  A  I  K  C  T  M  F  V  F  F  L  P  K  N  V  Y  *  Y  G  Q  Y  F  C  *  Q  I  L  C  F  L  *  H  Q  S  F  H  F  Y  P  L  V  I  A  A  S  N  L  E  Y  C  T  I  C  I  *  *  Y  V  I  Y  T  L  S  F  Q  F  I  Y  Q  </first_frame>
            <second_frame>  G  E  S  V  P  K  H  E  Y  V  S  *  Q  S  V  L  Q  F  L  S  R  L  A  F  F  S  G  E  Q  C  C  I  S  S  L  L  G  G  G  P  V  S  F  Q  L  L  V  V  L  M  V  K  I  A  G  F  G  *  M  K  I  G  S  A  L  M  K  S :   T  R  K  N  Q  L  I  L  N  L  R  M  K  C  R  R  Q  S  V  T  E  E  N  V  A  S  R  M  R  Q  A  H  P  P  L  V  L  S  L  S  I  A  R  G  H  N  A  C  V  S  H  C  L  S  F  P  T  L  H  E  T  S  M  M  Q  F  S  G  S  G  Y  *  S  S  E  I  M  L  C  S  L  K  C  *  H  L  L  S  N  A  P  C  L  Y  F  S  Y  P  R  M  F  I  N  M  D  N  I  S  V  D  K  F  C  A  F  F  D  T  K  V  F  I  F  I  L  L  *  L  Q  H  Q  I  W  N  I  V  L  F  A  F  D  S  M  L  Y  I  L  Y  R  F  N  L  F  I  R </second_frame>
            <third_frame>   V  N  P  Y  L  N  M  S  M  S  A  N  S  P  F  Y  S  S  C  R  V  W  H  S  F  Q  V  N  N  V  A  F  H  L  C  W  V  A  D  R  C  H  F  N  C  W  W  Y  *  W  *  R  L  L  A  L  V  E  *  K  L  D  P  P  S  *  K   : V  Q  G  K  T  S  L  Y  *  T  *  G  *  S  V  D  A  S  R  *  Q  K  R  M  *  L  Q  E  *  G  K  P  T  H  P  S  C  C  R  *  A  L  P  G  A  T  T  P  V  Y  H  I  A  S  A  S  L  L  C  M  R  P  Q  *  C  N  S  L  V  L  A  T  E  V  L  R  *  C  F  V  L  *  N  V  S  I  C  Y  Q  M  H  H  V  C  I  F  L  T  Q  E  C  L  L  I  W  T  I  F  L  L  T  N  F  V  L  S  L  T  P  K  F  S  F  L  S  S  C  N  C  S  I  K  F  G  I  L  Y  Y  L  H  L  I  V  C  Y  I  Y  S  I  V  S  I  Y  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78723" stop="78751"/>
                    <exon start="78997" stop="79213"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKIGSALMKSTRKNQLILNLRMKCRRQSVTEENVASRMRQAHPPLVLSLSIARGHNACVSHCLSFPTLHETSMMQFSGSGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79242" stop="79460"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVSICYQMHHVCIFLTQECLLIWTIFLLTNFVLSLTPKFSFLSSCNCSIKFGILYYLHLIVCYIYSIVSIYLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="81076" PGL_stop="84961"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81076" e_stop="81548"/>
            <exon e_start="83751" e_stop="84191"/>
            <exon e_start="84945" e_stop="84961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.775" e_score="0.993"/>
          <exon-only e_score="0.765"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81076" e_stop="81548" e_length="473"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="81549" i_stop="83750" i_length="2202"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="83751" e_stop="84191" e_length="441"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.775">
            <gDNA_intron_boundary i_start="84192" i_stop="84944" i_length="753"/>
          </intron>
          <exon e_serial="3" e_score="0.765">
            <gDNA_exon_boundary e_start="84945" e_stop="84961" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81076" stop="81548"/>
              <exon start="83751" stop="84096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81079" stop="81548"/>
              <exon start="83751" stop="84070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81086" stop="81548"/>
              <exon start="83751" stop="84075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81086" stop="81548"/>
              <exon start="83751" stop="84072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81090" stop="81548"/>
              <exon start="83751" stop="84077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81094" stop="81548"/>
              <exon start="83751" stop="84047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81094" stop="81548"/>
              <exon start="83751" stop="83980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81094" stop="81548"/>
              <exon start="83751" stop="83890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81094" stop="81387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81096" stop="81520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81098" stop="81548"/>
              <exon start="83751" stop="84122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81106" stop="81548"/>
              <exon start="83751" stop="84079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81107" stop="81548"/>
              <exon start="83751" stop="84114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81107" stop="81548"/>
              <exon start="83751" stop="83980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81108" stop="81548"/>
              <exon start="83751" stop="83804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81111" stop="81548"/>
              <exon start="83751" stop="84039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81111" stop="81548"/>
              <exon start="83751" stop="83792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81117" stop="81548"/>
              <exon start="83751" stop="83973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81117" stop="81548"/>
              <exon start="83751" stop="83789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81125" stop="81548"/>
              <exon start="83751" stop="84191"/>
              <exon start="84945" stop="84961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81177" stop="81548"/>
              <exon start="83751" stop="83936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81244" stop="81548"/>
              <exon start="83751" stop="84080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81335" stop="81548"/>
              <exon start="83751" stop="84114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81337" stop="81548"/>
              <exon start="83751" stop="83874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81367" stop="81548"/>
              <exon start="83751" stop="84128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81367" stop="81548"/>
              <exon start="83751" stop="84126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81454" stop="81548"/>
              <exon start="83751" stop="84080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714734" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATCCTACAATCAATGGAAATTCTCCCTATTTAAAGATTCCATTTTTATCAAAAAATCTCCCAAATCTTGAAAACCCCATTTGTTTAAACTTCAAAATAATGGCTACAAAAGTAATGGAAGTGGTGAAAAATCTTGATTTAAAGAGGTATATGGGTAGATGGTATGAAATTGCTTCATTTCCATCAAGATTTCAGCCTAAAGATGGAGTGGACACAAGGGCTACTTATACATTGAACTCAGATGGCACTGTACATGTGCTGAATGAGACATGGTGTAATGGCAAAAGAGGGTTTATTGAAGGAACTGCTTATAAGGCTGACCCTAATAGTGATGAGGCAAAATTGAAAGTCAGGTTTTATGTTCCACCATTTTTGCCTATAATTCCTGTTACTGGTGATTATTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTTTGATTGGTCAGCCTAGTAGGAGGTATTTATGG : ATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAGACACCAAAGGAATTTGGTGGATCAAATCAATCCTTGGAAAATAGGCAAAAACAGTACAATGGCCAAAAAAGGAAAACTATCCAAAGAGGTGTTTTGAAACAGTATTTAAAGCTTATGTTTTTACAAGTGTTTTTTACTATGAAACTATGTAAAGTTGCTAGTATTGAAAGTGTGTGGTTTGTATTTGAATCTCCTGTGAAATGTTGTGAACAAGTTTTGATAGTTCCCCTTTTTATGTCCCTGTGTCCCCCTCCGGCTACATGAGGGCGAAAAAAGGGAAGGAAAGTATGGTTTTTTTC : CAAAAATTAATAAAAAA</gDNA_template>
            <first_frame> K  I  L  Q  S  M  E  I  L  P  I  *  R  F  H  F  Y  Q  K  I  S  Q  I  L  K  T  P  F  V  *  T  S  K  *  W  L  Q  K  *  W  K  W  *  K  I  L  I  *  R  G  I  W  V  D  G  M  K  L  L  H  F  H  Q  D  F  S  L  K  M  E  W  T  Q  G  L  L  I  H  *  T  Q  M  A  L  Y  M  C  *  M  R  H  G  V  M  A  K  E  G  L  L  K  E  L  L  I  R  L  T  L  I  V  M  R  Q  N  *  K  S  G  F  M  F  H  H  F  C  L  *  F  L  L  L  V  I  I  G  F  C  I  L  M  R  I  I  S  M  L  *  L  V  S  L  V  G  G  I  Y  G :   Y  *  V  G  K  H  V  L  T  M  R  F  T  T  S  L  L  R  R  L  K  K  K  A  T  T  *  V  S  S  T  R  R  H  N  L  I  P  H  Q  I  V  K  I  A  P  K  T  P  K  E  F  G  G  S  N  Q  S  L  E  N  R  Q  K  Q  Y  N  G  Q  K  R  K  T  I  Q  R  G  V  L  K  Q  Y  L  K  L  M  F  L  Q  V  F  F  T  M  K  L  C  K  V  A  S  I  E  S  V  W  F  V  F  E  S  P  V  K  C  C  E  Q  V  L  I  V  P  L  F  M  S  L  C  P  P  P  A  T  *  G  R  K  K  G  R  K  V  W  F  F  S :   K  N  *  *  K  </first_frame>
            <second_frame>  K  S  Y  N  Q  W  K  F  S  L  F  K  D  S  I  F  I  K  K  S  P  K  S  *  K  P  H  L  F  K  L  Q  N  N  G  Y  K  S  N  G  S  G  E  K  S  *  F  K  E  V  Y  G  *  M  V  *  N  C  F  I  S  I  K  I  S  A  *  R  W  S  G  H  K  G  Y  L  Y  I  E  L  R  W  H  C  T  C  A  E  *  D  M  V  *  W  Q  K  R  V  Y  *  R  N  C  L  *  G  *  P  *  *  *  *  G  K  I  E  S  Q  V  L  C  S  T  I  F  A  Y  N  S  C  Y  W  *  L  L  G  F  V  Y  *  *  G  L  S  V  C  F  D  W  S  A  *  *  E  V  F  M   : D  I  K  *  A  N  T  S  *  R  *  D  L  Q  P  A  C  *  E  G  *  R  R  R  L  R  R  E  *  A  P  Q  D  A  T  I  *  F  P  T  R  *  *  R  *  P  Q  R  H  Q  R  N  L  V  D  Q  I  N  P  W  K  I  G  K  N  S  T  M  A  K  K  G  K  L  S  K  E  V  F  *  N  S  I  *  S  L  C  F  Y  K  C  F  L  L  *  N  Y  V  K  L  L  V  L  K  V  C  G  L  Y  L  N  L  L  *  N  V  V  N  K  F  *  *  F  P  F  L  C  P  C  V  P  L  R  L  H  E  G  E  K  R  E  G  K  Y  G  F  F   : P  K  I  N  K  K </second_frame>
            <third_frame>   N  P  T  I  N  G  N  S  P  Y  L  K  I  P  F  L  S  K  N  L  P  N  L  E  N  P  I  C  L  N  F  K  I  M  A  T  K  V  M  E  V  V  K  N  L  D  L  K  R  Y  M  G  R  W  Y  E  I  A  S  F  P  S  R  F  Q  P  K  D  G  V  D  T  R  A  T  Y  T  L  N  S  D  G  T  V  H  V  L  N  E  T  W  C  N  G  K  R  G  F  I  E  G  T  A  Y  K  A  D  P  N  S  D  E  A  K  L  K  V  R  F  Y  V  P  P  F  L  P  I  I  P  V  T  G  D  Y  W  V  L  Y  I  D  E  D  Y  Q  Y  A  L  I  G  Q  P  S  R  R  Y  L  W  :  I  L  S  R  Q  T  R  L  D  D  E  I  Y  N  Q  L  V  E  K  A  K  E  E  G  Y  D  V  S  K  L  H  K  T  P  Q  S  D  S  P  P  D  S  E  D  S  P  K  D  T  K  G  I  W  W  I  K  S  I  L  G  K  *  A  K  T  V  Q  W  P  K  K  E  N  Y  P  K  R  C  F  E  T  V  F  K  A  Y  V  F  T  S  V  F  Y  Y  E  T  M  *  S  C  *  Y  *  K  C  V  V  C  I  *  I  S  C  E  M  L  *  T  S  F  D  S  S  P  F  Y  V  P  V  S  P  S  G  Y  M  R  A  K  K  G  K  E  S  M  V  F  F  :  Q  K  L  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81078" stop="81548"/>
                    <exon start="83751" stop="83936"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPTINGNSPYLKIPFLSKNLPNLENPICLNFKIMATKVMEVVKNLDLKRYMGRWYEIASFPSRFQPKDGVDTRATYTLNSDGTVHVLNETWCNGKRGFIEGTAYKADPNSDEAKLKVRFYVPPFLPIIPVTGDYWVLYIDEDYQYALIGQPSRRYLWILSRQTRLDDEIYNQLVEKAKEEGYDVSKLHKTPQSDSPPDSEDSPKDTKGIWWIKSILGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83065" e_stop="83892"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="83065" e_stop="83892" e_length="828"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83065" stop="83892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAG</gDNA_template>
            <first_frame> V  K  S  C  L  V  T  E  S  F  N  M  L  V  F  L  S  L  L  C  *  L  L  S  L  V  I  S  L  K  S  S  I  K  S  L  I  L  L  V  L  Q  A  C  D  T  L  F  A  *  T  N  Y  I  V  C  G  I  S  V  C  C  L  C  *  I  S  *  M  I  L  A  L  S  M  F  I  P  L  D  I  I  *  S  F  C  F  P  K  I  L  D  V  S  L  T  T  L  N  A  L  L  I  R  F  V  E  N  H  I  C  L  P  F  S  S  S  S  Y  *  N  E  Y  R  L  L  I  K  H  *  A  L  F  L  P  Y  P  I  L  K  L  L  F  H  V  N  *  R  S  Q  *  Y  I  *  L  H  R  L  P  I  L  F  Q  A  F  C  L  L  V  Y  Q  M  C  I  F  F  I  R  L  W  C  L  G  Q  V  F  T  H  V  N  *  Y  L  P  L  T  K  A  W  T  S  R  K  K  S  P  S  V  F  A  C  F  F  Q  W  I  L  V  F  R  L  N  K  M  Y  F  V  G  R  Y  *  V  G  K  H  V  L  T  M  R  F  T  T  S  L  L  R  R  L  K  K  K  A  T  T  *  V  S  S  T  R  R  H  N  L  I  P  H  Q  I  V  K  I  A  P  K </first_frame>
            <second_frame>  *  N  H  V  *  *  P  S  P  S  T  C  *  F  F  C  H  C  Y  V  D  C  S  H  L  *  F  P  *  R  V  L  S  S  L  *  Y  F  *  F  F  K  P  V  I  P  Y  L  H  E  P  I  I  *  F  V  V  S  Q  F  V  V  Y  V  K  F  H  E  *  S  S  R  *  A  C  S  F  H  *  I  *  F  E  A  F  A  F  L  R  S  S  T  C  H  *  R  H  *  T  L  C  *  L  D  L  *  K  T  I  F  V  Y  L  S  L  P  L  R  I  E  M  N  I  V  Y  *  *  N  I  R  H  Y  S  F  H  T  Q  F  *  N  F  C  F  M  *  T  K  E  V  N  S  I  F  S  Y  T  D  S  L  F  Y  F  K  P  S  V  C  W  S  I  K  C  A  F  F  L  F  D  C  G  V  L  A  K  F  S  R  T  S  I  S  T  S  L  S  L  R  L  G  Q  V  E  R  N  H  L  V  F  L  H  V  F  S  N  G  F  L  F  F  V  L  T  K  C  I  L  L  A  D  I  K  *  A  N  T  S  *  R  *  D  L  Q  P  A  C  *  E  G  *  R  R  R  L  R  R  E  *  A  P  Q  D  A  T  I  *  F  P  T  R  *  *  R  *  P  Q   </second_frame>
            <third_frame>   E  I  M  S  S  D  R  V  L  Q  H  A  S  F  S  V  I  V  M  L  T  A  L  T  C  N  F  L  E  E  F  Y  Q  V  F  N  T  F  S  S  S  S  L  *  Y  L  I  C  M  N  Q  L  Y  S  L  W  Y  L  S  L  L  F  M  L  N  F  M  N  D  P  R  V  E  H  V  H  S  I  R  Y  N  L  K  L  L  L  S  *  D  P  R  R  V  I  D  D  I  K  R  S  A  D  *  I  C  R  K  P  Y  L  S  T  F  L  F  L  F  V  L  K  *  I  S  F  T  N  K  T  L  G  I  I  P  S  I  P  N  S  E  T  F  V  S  C  K  L  K  K  S  I  V  Y  L  V  T  Q  T  P  Y  F  I  S  S  L  L  F  V  G  L  S  N  V  H  F  F  Y  S  T  V  V  S  W  P  S  F  H  A  R  Q  L  V  P  P  S  H  *  G  L  D  K  S  K  E  I  T  *  C  F  C  M  F  F  P  M  D  S  C  F  S  S  *  Q  N  V  F  C  W  Q  I  L  S  R  Q  T  R  L  D  D  E  I  Y  N  Q  L  V  E  K  A  K  E  E  G  Y  D  V  S  K  L  H  K  T  P  Q  S  D  S  P  P  D  S  E  D  S  P  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83501" stop="83761"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKEVNSIFSYTDSLFYFKPSVCWSIKCAFFLFDCGVLAKFSRTSISTSLSLRLGQVERNHLVFLHVFSNGFLFFVLTKCILLADIK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83430" stop="83654"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISFTNKTLGIIPSIPNSETFVSCKLKKSIVYLVTQTPYFISSLLFVGLSNVHFFYSTVVSWPSFHARQLVPPSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="99083" PGL_stop="93591"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99083" e_stop="98963"/>
            <exon e_start="97908" e_stop="97756"/>
            <exon e_start="97584" e_stop="97192"/>
            <exon e_start="97086" e_stop="97010"/>
            <exon e_start="96453" e_stop="95170"/>
            <exon e_start="93856" e_stop="93591"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.699" acc_prob="0.993" e_score="0.959"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.991" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.999"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="99083" e_stop="98963" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.699" acc_prob="0.993">
            <gDNA_intron_boundary i_start="98962" i_stop="97909" i_length="1054"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97908" e_stop="97756" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="97755" i_stop="97585" i_length="171"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="97584" e_stop="97192" e_length="393"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.991">
            <gDNA_intron_boundary i_start="97191" i_stop="97087" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97086" e_stop="97010" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="97009" i_stop="96454" i_length="556"/>
          </intron>
          <exon e_serial="5" e_score="0.999">
            <gDNA_exon_boundary e_start="96453" e_stop="95170" e_length="1284"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="95169" i_stop="93857" i_length="1313"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="93856" e_stop="93591" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99083" stop="98963"/>
              <exon start="97908" stop="97756"/>
              <exon start="97584" stop="97192"/>
              <exon start="97086" stop="97025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97433" stop="97192"/>
              <exon start="97086" stop="97010"/>
              <exon start="96453" stop="95983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97433" stop="97192"/>
              <exon start="97086" stop="97010"/>
              <exon start="96453" stop="96180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96090" stop="95316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96090" stop="95537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96089" stop="95576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95782" stop="95170"/>
              <exon start="93856" stop="93667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422262" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95715" stop="95170"/>
              <exon start="93856" stop="93619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95596" stop="95170"/>
              <exon start="93856" stop="93737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95596" stop="95170"/>
              <exon start="93856" stop="93766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95554" stop="95170"/>
              <exon start="93856" stop="93591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95554" stop="95170"/>
              <exon start="93856" stop="93592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95554" stop="95170"/>
              <exon start="93856" stop="93594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95343" stop="95170"/>
              <exon start="93856" stop="93629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543833" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGGTGGTGAAAGGGAAAACTATGATAATTTTCCAGTTGGTATGAGGGTTCTTGCTGTTGATGATGACCCAATTTGTTTGAAGTTGTTGGATGGACTGCTTAGGAAATGCCAGTATCACG : TTACTACGACGAGTCAGGCAAGATCGGCGTTGAAGATGTTGAGGGAAAACAAAGATAGATTTGACTTGGTGATCAGTGATGTCCACATGCCTGATATGGATGGCTTTAAACTTCTGGAGCTTGTTGGTCTCGAGATGGATCTTCCCGTCATAA : TGTTGTCAGCAAACAGTGATAGCAAACTTGTAATGAAGGGAATAACTCACGGTGCTTGTGACTATTTGGTGAAGCCTGTCCGGCTTGAGGAGCTAAAGAATATATGGCAACATGTAATAAGGAGAAAGAAAGTTGAGCCTAAGAAGCAAAACAAGTCTGATGATCAAGACAAGGCTCACCAGGGAGGAGGAGAAGGCGAAAGAGGATCACAGGTTTCAGGTAATGCAGATCAAAACGGGAAGGTTAACAAGAAAAGGAAGGATGAAGAATATGAAAGCGATGAAAATGGAAATGATGATGAAGATCCCGGAACTCAGAAGAAACCTCGTGTAGTTTGGGCTATAGAGCTTCACAAGAAGTTTGTTACAGCAGTTCATCAGTTAGGCCTTGAAA : AAGCTGTGCCTAAGAGGATTCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAGAATGTGGCGAGCCATCTCCAG : AAGTATAGGCTCTTCTTGAAAAGGATCAATGCGGCAGATGCCCAGCAAGCCAACTTGGCTGCCGCTGCATTAGGGGGTAAAGATTCTGCATACATGCGAATGGGTTCACTGGACGGGCTTGGTGGTTTTCGAACGTTGGCTGGATCAGGTAGGTTCGGTCAAGCTAGCTTATCATCATCATATGCATCAGGAGGCATGCTTGGCAGACTAAATAGTCCTTCTGGTGTAAGCCTTCGCAATCTAGCATCTACACCTATTCTCCAACCTAATCATGGTCAAAATATGAGTAATAACTCCCTCAATGCCTTGATGAAATTTAACGCAAATGTTCCACCTGCTAGCCAGAATGCTAATTTTTTCCAAGGGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGTACATTCACGAACTCTAGATTGGTTGGTAGCGCAAACAGCTCTATGCCCAATGTATCAAATAATCCTATTTTGCTTCAAGTAAATTCCCAGCAACCACTGACGGGGATGGGATTTGGAAATCAGACTTCTCTCAACGTAGCCTCTTTTAGCTCTGAGGCCTTCAATACTGGTGTAAGTGGTTCTTCCAATTTTCTGGACCATGATAGATATTCTAACGAGAATTGGCAAACTTCTCTCCAGCCTCTGAAGTTCCAGTCAACCTCCTTTCCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAG : GATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTCAACAACATATGCATACTATGCCTTCTTTTTCATTGTTATTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTCTTAAACGCTAATTACTTGTTGCTTTTAAAGGGCCGGTT</gDNA_template>
            <first_frame> M  G  G  E  R  E  N  Y  D  N  F  P  V  G  M  R  V  L  A  V  D  D  D  P  I  C  L  K  L  L  D  G  L  L  R  K  C  Q  Y  H   : V  T  T  T  S  Q  A  R  S  A  L  K  M  L  R  E  N  K  D  R  F  D  L  V  I  S  D  V  H  M  P  D  M  D  G  F  K  L  L  E  L  V  G  L  E  M  D  L  P  V  I   : M  L  S  A  N  S  D  S  K  L  V  M  K  G  I  T  H  G  A  C  D  Y  L  V  K  P  V  R  L  E  E  L  K  N  I  W  Q  H  V  I  R  R  K  K  V  E  P  K  K  Q  N  K  S  D  D  Q  D  K  A  H  Q  G  G  G  E  G  E  R  G  S  Q  V  S  G  N  A  D  Q  N  G  K  V  N  K  K  R  K  D  E  E  Y  E  S  D  E  N  G  N  D  D  E  D  P  G  T  Q  K  K  P  R  V  V  W  A  I  E  L  H  K  K  F  V  T  A  V  H  Q  L  G  L  E   : K  A  V  P  K  R  I  L  D  L  M  N  V  E  G  L  T  R  E  N  V  A  S  H  L  Q  :  K  Y  R  L  F  L  K  R  I  N  A  A  D  A  Q  Q  A  N  L  A  A  A  A  L  G  G  K  D  S  A  Y  M  R  M  G  S  L  D  G  L  G  G  F  R  T  L  A  G  S  G  R  F  G  Q  A  S  L  S  S  S  Y  A  S  G  G  M  L  G  R  L  N  S  P  S  G  V  S  L  R  N  L  A  S  T  P  I  L  Q  P  N  H  G  Q  N  M  S  N  N  S  L  N  A  L  M  K  F  N  A  N  V  P  P  A  S  Q  N  A  N  F  F  Q  G  I  P  A  S  L  E  L  D  Q  L  Q  Q  S  K  C  A  T  H  I  G  E  L  N  P  L  D  E  S  G  L  H  T  V  A  S  T  F  T  N  S  R  L  V  G  S  A  N  S  S  M  P  N  V  S  N  N  P  I  L  L  Q  V  N  S  Q  Q  P  L  T  G  M  G  F  G  N  Q  T  S  L  N  V  A  S  F  S  S  E  A  F  N  T  G  V  S  G  S  S  N  F  L  D  H  D  R  Y  S  N  E  N  W  Q  T  S  L  Q  P  L  K  F  Q  S  T  S  F  P  L  N  E  P  F  S  N  S  H  L  P  Q  D  R  V  R  D  N  D  T  S  T  G  P  H  L  Q  N  N  P  V  D  F  S  T  S  T  I  V  S  V  P  F  E  A  S  R  G  E  T  Q  C  R  E  S  L  G  A  A  V  Q  I  M  N  Q  A  T  C  Q  R  W  P  D  Q  N  Q  H  Y  S  H  N  S  N  N  I  F  G  N  M  S  S  Q  V  S  S  N  G  G  M  A  S  L  T  H  P  V  D  Q  N  N  D  M  F  C  T  R  V  E  T  S  L  N  C  I  S  N  G  S  S  S  M  H  T  H  N  R  E  S  E  K  L  T  H  D  S  R  T  K  T  N  E  D  Y  L  F  Q  T  T  K  Q  Q  V  G  F  L  P  Q  G  Y  G  S  L  D  D  L  M  G  E  M  K  Q  :  D  Q  D  G  A  M  L  D  G  G  E  F  G  F  D  A  Y  S  L  G  S  G  L  *  G  F  C  N  *  Q  V  R  K  E  R  I  *  *  Y  S  K  I  L  F  A  H  L  R  V  S  T  T  Y  A  Y  Y  A  F  F  F  I  V  I  F  L  S  R  N  G  V  I  D  R  R  K  L  L  N  A  N  Y  L  L  L  L  K  G  R   </first_frame>
            <second_frame>  W  V  V  K  G  K  T  M  I  I  F  Q  L  V  *  G  F  L  L  L  M  M  T  Q  F  V  *  S  C  W  M  D  C  L  G  N  A  S  I  T  :  L  L  R  R  V  R  Q  D  R  R  *  R  C  *  G  K  T  K  I  D  L  T  W  *  S  V  M  S  T  C  L  I  W  M  A  L  N  F  W  S  L  L  V  S  R  W  I  F  P  S  *  :  C  C  Q  Q  T  V  I  A  N  L  *  *  R  E  *  L  T  V  L  V  T  I  W  *  S  L  S  G  L  R  S  *  R  I  Y  G  N  M  *  *  G  E  R  K  L  S  L  R  S  K  T  S  L  M  I  K  T  R  L  T  R  E  E  E  K  A  K  E  D  H  R  F  Q  V  M  Q  I  K  T  G  R  L  T  R  K  G  R  M  K  N  M  K  A  M  K  M  E  M  M  M  K  I  P  E  L  R  R  N  L  V  *  F  G  L  *  S  F  T  R  S  L  L  Q  Q  F  I  S  *  A  L  K  :  K  L  C  L  R  G  F  L  I  *  *  M  L  K  D  L  Q  E  R  M  W  R  A  I  S  R :   S  I  G  S  S  *  K  G  S  M  R  Q  M  P  S  K  P  T  W  L  P  L  H  *  G  V  K  I  L  H  T  C  E  W  V  H  W  T  G  L  V  V  F  E  R  W  L  D  Q  V  G  S  V  K  L  A  Y  H  H  H  M  H  Q  E  A  C  L  A  D  *  I  V  L  L  V  *  A  F  A  I  *  H  L  H  L  F  S  N  L  I  M  V  K  I  *  V  I  T  P  S  M  P  *  *  N  L  T  Q  M  F  H  L  L  A  R  M  L  I  F  S  K  G  F  L  H  L  W  S  L  I  N  C  S  R  A  S  V  P  H  T  *  E  S  *  I  L  W  M  S  Q  D  C  I  Q  W  P  V  H  S  R  T  L  D  W  L  V  A  Q  T  A  L  C  P  M  Y  Q  I  I  L  F  C  F  K  *  I  P  S  N  H  *  R  G  W  D  L  E  I  R  L  L  S  T  *  P  L  L  A  L  R  P  S  I  L  V  *  V  V  L  P  I  F  W  T  M  I  D  I  L  T  R  I  G  K  L  L  S  S  L  *  S  S  S  Q  P  P  F  R  *  M  N  L  S  A  T  A  I  C  L  K  T  E  Y  E  T  M  I  L  Q  L  A  L  I  C  R  T  I  L  L  I  F  Q  P  P  P  *  F  P  Y  L  S  K  L  Q  E  E  K  H  N  A  V  K  V  *  G  L  L  F  R  L  *  T  K  Q  P  A  N  G  G  Q  I  R  T  N  I  I  P  T  I  Q  T  I  F  L  V  T  *  A  L  K  F  L  A  M  V  E  W  P  L  *  L  I  L  W  T  K  T  M  I  C  S  A  Q  G  W  R  L  L  *  T  A  Y  Q  M  V  V  L  Q  C  T  H  T  I  V  K  V  K  N  *  L  M  T  R  G  Q  K  Q  M  K  T  T  S  S  R  Q  Q  S  N  K  L  V  F  F  L  R  A  M  A  P  L  M  I  L  W  V  K  *  N  R :   I  K  M  E  P  C  *  T  E  E  N  S  D  L  M  L  I  H  L  V  Q  V  Y  E  V  F  V  T  S  K  L  G  R  R  G  S  S  D  I  A  K  F  Y  L  L  I  *  E  S  Q  Q  H  M  H  T  M  P  S  F  S  L  L  F  S  C  P  G  T  V  L  S  I  V  E  N  S  *  T  L  I  T  C  C  F  *  R  A  G  </second_frame>
            <third_frame>   G  W  *  K  G  K  L  *  *  F  S  S  W  Y  E  G  S  C  C  *  *  *  P  N  L  F  E  V  V  G  W  T  A  *  E  M  P  V  S  R :   Y  Y  D  E  S  G  K  I  G  V  E  D  V  E  G  K  Q  R  *  I  *  L  G  D  Q  *  C  P  H  A  *  Y  G  W  L  *  T  S  G  A  C  W  S  R  D  G  S  S  R  H  N :   V  V  S  K  Q  *  *  Q  T  C  N  E  G  N  N  S  R  C  L  *  L  F  G  E  A  C  P  A  *  G  A  K  E  Y  M  A  T  C  N  K  E  K  E  S  *  A  *  E  A  K  Q  V  *  *  S  R  Q  G  S  P  G  R  R  R  R  R  K  R  I  T  G  F  R  *  C  R  S  K  R  E  G  *  Q  E  K  E  G  *  R  I  *  K  R  *  K  W  K  *  *  *  R  S  R  N  S  E  E  T  S  C  S  L  G  Y  R  A  S  Q  E  V  C  Y  S  S  S  S  V  R  P  *  K :   S  C  A  *  E  D  S  *  S  D  E  C  *  R  T  Y  K  R  E  C  G  E  P  S  P   : E  V  *  A  L  L  E  K  D  Q  C  G  R  C  P  A  S  Q  L  G  C  R  C  I  R  G  *  R  F  C  I  H  A  N  G  F  T  G  R  A  W  W  F  S  N  V  G  W  I  R  *  V  R  S  S  *  L  I  I  I  I  C  I  R  R  H  A  W  Q  T  K  *  S  F  W  C  K  P  S  Q  S  S  I  Y  T  Y  S  P  T  *  S  W  S  K  Y  E  *  *  L  P  Q  C  L  D  E  I  *  R  K  C  S  T  C  *  P  E  C  *  F  F  P  R  D  S  C  I  F  G  A  *  S  T  A  A  E  Q  V  C  H  T  H  R  R  V  E  S  F  G  *  V  R  T  A  Y  S  G  Q  Y  I  H  E  L  *  I  G  W  *  R  K  Q  L  Y  A  Q  C  I  K  *  S  Y  F  A  S  S  K  F  P  A  T  T  D  G  D  G  I  W  K  S  D  F  S  Q  R  S  L  F  *  L  *  G  L  Q  Y  W  C  K  W  F  F  Q  F  S  G  P  *  *  I  F  *  R  E  L  A  N  F  S  P  A  S  E  V  P  V  N  L  L  S  V  K  *  T  F  Q  Q  Q  P  F  A  S  R  Q  S  T  R  Q  *  Y  F  N  W  P  S  F  A  E  Q  S  C  *  F  F  N  L  H  H  S  F  R  T  F  R  S  F  K  R  R  N  T  M  P  *  K  F  R  G  C  C  S  D  Y  E  P  S  N  L  P  T  V  A  R  S  E  P  T  L  F  P  Q  F  K  Q  Y  F  W  *  H  E  L  S  S  F  *  Q  W  W  N  G  L  F  N  S  S  C  G  P  K  Q  *  Y  V  L  H  K  G  G  D  F  F  E  L  H  I  K  W  *  F  F  N  A  H  T  Q  S  *  K  *  K  I  N  S  *  L  E  D  K  N  K  *  R  L  P  L  P  D  N  K  A  T  S  W  F  S  S  S  G  L  W  L  P  *  *  S  Y  G  *  N  E  T   : G  S  R  W  S  H  V  R  R  R  R  I  R  I  *  C  L  F  T  W  F  R  F  M  R  F  L  *  L  A  S  *  E  G  E  D  L  V  I  *  Q  N  F  I  C  S  F  K  S  L  N  N  I  C  I  L  C  L  L  F  H  C  Y  F  P  V  Q  E  R  C  Y  R  S  *  K  T  L  K  R  *  L  L  V  A  F  K  G  P  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99083" stop="98963"/>
                    <exon start="97908" stop="97756"/>
                    <exon start="97584" stop="97192"/>
                    <exon start="97086" stop="97010"/>
                    <exon start="96453" stop="95170"/>
                    <exon start="93856" stop="93785"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2097</number_coding_nucleotides>
                  <number_encoded_amino_acids>699</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGGERENYDNFPVGMRVLAVDDDPICLKLLDGLLRKCQYHVTTTSQARSALKMLRENKDRFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANSDSKLVMKGITHGACDYLVKPVRLEELKNIWQHVIRRKKVEPKKQNKSDDQDKAHQGGGEGERGSQVSGNADQNGKVNKKRKDEEYESDENGNDDEDPGTQKKPRVVWAIELHKKFVTAVHQLGLEKAVPKRILDLMNVEGLTRENVASHLQKYRLFLKRINAADAQQANLAAAALGGKDSAYMRMGSLDGLGGFRTLAGSGRFGQASLSSSYASGGMLGRLNSPSGVSLRNLASTPILQPNHGQNMSNNSLNALMKFNANVPPASQNANFFQGIPASLELDQLQQSKCATHIGELNPLDESGLHTVASTFTNSRLVGSANSSMPNVSNNPILLQVNSQQPLTGMGFGNQTSLNVASFSSEAFNTGVSGSSNFLDHDRYSNENWQTSLQPLKFQSTSFPLNEPFSNSHLPQDRVRDNDTSTGPHLQNNPVDFSTSTIVSVPFEASRGETQCRESLGAAVQIMNQATCQRWPDQNQHYSHNSNNIFGNMSSQVSSNGGMASLTHPVDQNNDMFCTRVETSLNCISNGSSSMHTHNRESEKLTHDSRTKTNEDYLFQTTKQQVGFLPQGYGSLDDLMGEMKQDQDGAMLDGGEFGFDAYSLGSGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="111277" PGL_stop="105132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111272" e_stop="111222"/>
            <exon e_start="111136" e_stop="111033"/>
            <exon e_start="110943" e_stop="110634"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111272" e_stop="111222" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111221" i_stop="111137" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111136" e_stop="111033" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="110943" e_stop="110634" e_length="310"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111272" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111272" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111271" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609444" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111271" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620928" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111271" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595103" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111267" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111266" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111264" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111258" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111235" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111229" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609949" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111126" stop="111033"/>
              <exon start="110943" stop="110733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612133" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG : CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG : GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCTGTTAAATGTTGGTTAATAGTAGTATTTTGTTATTGCATTTTCATGCATTGAGTTATCTGTTTGTGATTTATATATTAATGACCGATTAT</gDNA_template>
            <first_frame> F  Q  S  A  S  E  L  K  R  R  E  S  P  T  A  K  M  :  P  S  H  K  S  F  M  I  K  K  K  L  A  K  K  Q  R  Q  N  R  P  I  P  Y  W  I  R  M  R  T  D  N  T  I  R :   Y  N  A  K  R  R  H  W  R  R  T  K  L  G  F  *  G  G  R  I  V  F  Y  L  S  F  *  W  K  N  F  S  D  Y  V  L  F  S  S  S  I  G  A  H  L  L  R  K  Q  T  V  L  L  I  L  E  E  I  Y  I  L  M  T  D  Y  E  V  V  L  F  N  L  S  C  *  M  L  V  N  S  S  I  L  L  L  H  F  H  A  L  S  Y  L  F  V  I  Y  I  L  M  T  D  Y </first_frame>
            <second_frame>  F  N  Q  H  Q  S  L  S  A  G  N  L  Q  Q  Q  K  C :   L  R  T  S  H  S  *  L  R  R  S  *  R  R  S  R  G  R  T  G  Q  F  L  T  G  S  V  *  G  L  I  T  Q  S   : G  T  M  L  S  V  D  T  G  V  G  P  S  *  D  F  K  V  E  E  S  C  F  I  *  V  F  N  G  K  T  S  R  I  M  F  Y  F  R  V  Q  *  E  L  I  C  *  G  N  R  L  C  F  *  F  W  K  R  F  I  Y  *  *  P  I  M  K  S  F  C  L  I  *  A  V  K  C  W  L  I  V  V  F  C  Y  C  I  F  M  H  *  V  I  C  L  *  F  I  Y  *  *  P  I   </second_frame>
            <third_frame>   S  I  S  I  R  A  *  A  P  G  I  S  N  S  K  N   : A  F  A  Q  V  I  H  D  *  E  E  A  S  E  E  A  E  A  E  Q  A  N  S  L  L  D  P  Y  E  D  *  *  H  N  Q  :  V  Q  C  *  A  *  T  L  A  *  D  Q  A  R  I  L  R  W  K  N  R  V  L  F  K  F  L  M  E  K  L  L  G  L  C  F  I  F  E  F  N  R  S  S  F  A  E  E  T  D  C  A  F  N  F  G  R  D  L  Y  I  N  D  R  L  *  S  R  F  V  *  F  E  L  L  N  V  G  *  *  *  Y  F  V  I  A  F  S  C  I  E  L  S  V  C  D  L  Y  I  N  D  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111272" stop="111222"/>
                    <exon start="111136" stop="111033"/>
                    <exon start="110943" stop="110895"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQSASELKRRESPTAKMPSHKSFMIKKKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="111277" e_stop="111222"/>
            <exon e_start="111136" e_stop="111033"/>
            <exon e_start="110943" e_stop="110732"/>
            <exon e_start="108734" e_stop="108705"/>
            <exon e_start="107542" e_stop="107494"/>
            <exon e_start="105231" e_stop="105132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.800"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.735"/>
          <exon-only e_score="0.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111277" e_stop="111222" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111221" i_stop="111137" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111136" e_stop="111033" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110943" e_stop="110732" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110731" i_stop="108735" i_length="1997"/>
          </intron>
          <exon e_serial="4" e_score="0.800">
            <gDNA_exon_boundary e_start="108734" e_stop="108705" e_length="30"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108704" i_stop="107543" i_length="1162"/>
          </intron>
          <exon e_serial="5" e_score="0.735">
            <gDNA_exon_boundary e_start="107542" e_stop="107494" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107493" i_stop="105232" i_length="2262"/>
          </intron>
          <exon e_serial="6" e_score="0.000">
            <gDNA_exon_boundary e_start="105231" e_stop="105132" e_length="100"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111277" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110732"/>
              <exon start="108734" stop="108705"/>
              <exon start="107542" stop="107494"/>
              <exon start="105231" stop="105132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111271" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595103" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111264" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111235" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111229" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609949" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111126" stop="111033"/>
              <exon start="110943" stop="110733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612133" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGGGTTTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG : CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG : GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTA : AAAAAATTAAAAACATTAAACAAAAAAAAA : TAATAAAAAAATTATATCTAAAAAAAAAAATAACAAGAAAAATAAATCC : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> *  G  F  N  Q  H  Q  S  L  S  A  G  N  L  Q  Q  Q  K  C :   L  R  T  S  H  S  *  L  R  R  S  *  R  R  S  R  G  R  T  G  Q  F  L  T  G  S  V  *  G  L  I  T  Q  S   : G  T  M  L  S  V  D  T  G  V  G  P  S  *  D  F  K  V  E  E  S  C  F  I  *  V  F  N  G  K  T  S  R  I  M  F  Y  F  R  V  Q  *  E  L  I  C  *  G  N  R  L  C  F  *  F  W  K  R  F  I  Y  *  *  P  I  M  K  S  F  C  L  :  K  K  L  K  T  L  N  K  K  K  :  *  *  K  N  Y  I  *  K  K  K  *  Q  E  K  *  I   : L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  R  V  S  I  S  I  R  A  *  A  P  G  I  S  N  S  K  N   : A  F  A  Q  V  I  H  D  *  E  E  A  S  E  E  A  E  A  E  Q  A  N  S  L  L  D  P  Y  E  D  *  *  H  N  Q  :  V  Q  C  *  A  *  T  L  A  *  D  Q  A  R  I  L  R  W  K  N  R  V  L  F  K  F  L  M  E  K  L  L  G  L  C  F  I  F  E  F  N  R  S  S  F  A  E  E  T  D  C  A  F  N  F  G  R  D  L  Y  I  N  D  R  L  *  S  R  F  V  * :   K  N  *  K  H  *  T  K  K  N :   N  K  K  I  I  S  K  K  K  N  N  K  K  N  K  S  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   G  F  Q  S  A  S  E  L  K  R  R  E  S  P  T  A  K  M  :  P  S  H  K  S  F  M  I  K  K  K  L  A  K  K  Q  R  Q  N  R  P  I  P  Y  W  I  R  M  R  T  D  N  T  I  R :   Y  N  A  K  R  R  H  W  R  R  T  K  L  G  F  *  G  G  R  I  V  F  Y  L  S  F  *  W  K  N  F  S  D  Y  V  L  F  S  S  S  I  G  A  H  L  L  R  K  Q  T  V  L  L  I  L  E  E  I  Y  I  L  M  T  D  Y  E  V  V  L  F   : K  K  I  K  N  I  K  Q  K  K   : I  I  K  K  L  Y  L  K  K  K  I  T  R  K  I  N  P :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110861" stop="110732"/>
                    <exon start="108734" stop="108705"/>
                    <exon start="107542" stop="107494"/>
                    <exon start="105231" stop="105132"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WKNFSDYVLFSSSIGAHLLRKQTVLLILEEIYILMTDYEVVLFKKIKNIKQKKIIKKLYLKKKITRKINPFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111275" stop="111222"/>
                    <exon start="111136" stop="111033"/>
                    <exon start="110943" stop="110895"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFQSASELKRRESPTAKMPSHKSFMIKKKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="111274" e_stop="111222"/>
            <exon e_start="111136" e_stop="111033"/>
            <exon e_start="110943" e_stop="110745"/>
            <exon e_start="107547" e_stop="107471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.981"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.649"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="111274" e_stop="111222" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111221" i_stop="111137" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111136" e_stop="111033" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110943" e_stop="110745" e_length="199"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110744" i_stop="107548" i_length="3197"/>
          </intron>
          <exon e_serial="4" e_score="0.649">
            <gDNA_exon_boundary e_start="107547" e_stop="107471" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111274" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110745"/>
              <exon start="107547" stop="107471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111271" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595103" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111235" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339402" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG : CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG : GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAA : AATACTAATAAAAAAATTATATCTAAAAAAAAAAATAACAAGAAAAATAAATCCTGAATAATATATAGGATACAATA</gDNA_template>
            <first_frame> G  F  N  Q  H  Q  S  L  S  A  G  N  L  Q  Q  Q  K  C :   L  R  T  S  H  S  *  L  R  R  S  *  R  R  S  R  G  R  T  G  Q  F  L  T  G  S  V  *  G  L  I  T  Q  S   : G  T  M  L  S  V  D  T  G  V  G  P  S  *  D  F  K  V  E  E  S  C  F  I  *  V  F  N  G  K  T  S  R  I  M  F  Y  F  R  V  Q  *  E  L  I  C  *  G  N  R  L  C  F  *  F  W  K  R  F  I  Y  *  *  P  I  M  K :   I  L  I  K  K  L  Y  L  K  K  K  I  T  R  K  I  N  P  E  *  Y  I  G  Y  N  </first_frame>
            <second_frame>  V  S  I  S  I  R  A  *  A  P  G  I  S  N  S  K  N   : A  F  A  Q  V  I  H  D  *  E  E  A  S  E  E  A  E  A  E  Q  A  N  S  L  L  D  P  Y  E  D  *  *  H  N  Q  :  V  Q  C  *  A  *  T  L  A  *  D  Q  A  R  I  L  R  W  K  N  R  V  L  F  K  F  L  M  E  K  L  L  G  L  C  F  I  F  E  F  N  R  S  S  F  A  E  E  T  D  C  A  F  N  F  G  R  D  L  Y  I  N  D  R  L  *   : K  Y  *  *  K  N  Y  I  *  K  K  K  *  Q  E  K  *  I  L  N  N  I  *  D  T  I </second_frame>
            <third_frame>   F  Q  S  A  S  E  L  K  R  R  E  S  P  T  A  K  M  :  P  S  H  K  S  F  M  I  K  K  K  L  A  K  K  Q  R  Q  N  R  P  I  P  Y  W  I  R  M  R  T  D  N  T  I  R :   Y  N  A  K  R  R  H  W  R  R  T  K  L  G  F  *  G  G  R  I  V  F  Y  L  S  F  *  W  K  N  F  S  D  Y  V  L  F  S  S  S  I  G  A  H  L  L  R  K  Q  T  V  L  L  I  L  E  E  I  Y  I  L  M  T  D  Y  E  :  N  T  N  K  K  I  I  S  K  K  K  N  N  K  K  N  K  S  *  I  I  Y  R  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111272" stop="111222"/>
                    <exon start="111136" stop="111033"/>
                    <exon start="110943" stop="110895"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQSASELKRRESPTAKMPSHKSFMIKKKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="115051" PGL_stop="111752"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115046" e_stop="114984"/>
            <exon e_start="112517" e_stop="111876"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115046" e_stop="114984" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="114983" i_stop="112518" i_length="2466"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="112517" e_stop="111876" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115046" stop="114984"/>
              <exon start="112517" stop="111977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115017" stop="114984"/>
              <exon start="112517" stop="111946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115017" stop="114984"/>
              <exon start="112517" stop="111952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115017" stop="114984"/>
              <exon start="112517" stop="112083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115011" stop="114984"/>
              <exon start="112517" stop="111918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115007" stop="114984"/>
              <exon start="112517" stop="112051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112517" stop="112018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112420" stop="111966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112312" stop="111876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112312" stop="111876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112225" stop="111924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348741" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCATTTCTCTGCAGCTAAACCCCTGCGGCTTTAGGTTCCAGAAACTTCGCTCATCGATTCAG : GTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAAAATGCCAACGCTAATCGACTTCCGATCTAGTTTCTTTTGGGTGTAATTTGTGAAAATTTTACTTCAGTTAATTTTCTATCATGATGTACA</gDNA_template>
            <first_frame> V  I  S  L  Q  L  N  P  C  G  F  R  F  Q  K  L  R  S  S  I  Q  :  V  K  T  S  L  L  E  I  W  P  S  I  I  P  I  *  S  C  A  G  S  S  Q  E  *  L  S  V  D  F  V  R  N  V  M  G  S  V  *  F  V  I  H  T  S  G  L  A  H  L  S  E  F  V  M  N  A  T  M  D  P  F  K  A  V  V  S  S  V  V  V  L  V  S  L  M  L  T  I  A  R  S  V  L  S  R  R  K  I  G  M  A  V  Q  R  *  S  I  L  V  V  P  R  P  I  C  F  M  N  V  K  N  M  V  S  R  R  D  E  R  V  G  Y  L  F  H  P  S  V  K  F  T  T  G  I  L  Y  *  H  N  C  V  K  I  R  H  L  S  I  A  Y  V  L  T  H  Y  I  A  L  Q  L  A  V  L  H  T  D  I  T  S  L  T  H  C  N  F  V  L  C  K  G  M  Q  Q  N  A  N  A  N  R  L  P  I  *  F  L  L  G  V  I  C  E  N  F  T  S  V  N  F  L  S  *  C  T </first_frame>
            <second_frame>  S  F  L  C  S  *  T  P  A  A  L  G  S  R  N  F  A  H  R  F  R :   L  R  R  H  C  *  K  Y  G  Q  A  S  S  R  F  D  H  V  P  E  A  A  R  N  S  Y  R  S  T  L  *  E  M  *  W  E  V  C  D  L  *  F  I  R  P  A  L  H  T  C  P  S  L  *  *  M  Q  L  W  I  L  S  R  P  L  C  H  L  W  W  C  W  Y  L  *  C  L  L  L  Q  G  V  Y  S  A  G  E  R  *  G  W  L  S  K  D  S  Q  S  W  *  C  Q  D  R  S  V  L  *  T  *  K  I  W  F  Q  E  E  M  R  G  S  D  T  S  F  T  L  R  *  S  S  L  L  E  F  C  T  S  I  I  V  S  K  L  G  I  *  V  *  P  M  Y  L  L  T  I  L  P  C  N  L  L  Y  Y  I  L  I  S  Q  V  *  P  I  V  I  S  F  C  A  R  V  C  N  K  M  P  T  L  I  D  F  R  S  S  F  F  W  V  *  F  V  K  I  L  L  Q  L  I  F  Y  H  D  V   </second_frame>
            <third_frame>   H  F  S  A  A  K  P  L  R  L  *  V  P  E  T  S  L  I  D  S   : G  *  D  V  T  A  R  N  M  A  K  H  H  P  D  L  I  M  C  R  K  Q  P  G  I  A  I  G  R  L  C  E  K  C  D  G  K  C  V  I  C  D  S  Y  V  R  P  C  T  L  V  R  V  C  D  E  C  N  Y  G  S  F  Q  G  R  C  V  I  C  G  G  V  G  I  S  D  A  Y  Y  C  K  E  C  T  Q  Q  E  K  D  R  D  G  C  P  K  I  V  N  L  G  S  A  K  T  D  L  F  Y  E  R  K  K  Y  G  F  K  K  R  *  E  G  R  I  P  L  S  P  F  G  E  V  H  Y  W  N  F  V  L  A  *  L  C  Q  N  *  A  F  E  Y  S  L  C  T  Y  S  L  Y  C  L  A  T  C  C  I  T  Y  *  Y  H  K  F  N  P  L  *  F  R  F  V  Q  G  Y  A  T  K  C  Q  R  *  S  T  S  D  L  V  S  F  G  C  N  L  *  K  F  Y  F  S  *  F  S  I  M  M  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112512" stop="112162"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVTARNMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="115051" e_stop="114984"/>
            <exon e_start="112517" e_stop="112010"/>
            <exon e_start="111800" e_stop="111752"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.551"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115051" e_stop="114984" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="114983" i_stop="112518" i_length="2466"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="112517" e_stop="112010" e_length="508"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="112009" i_stop="111801" i_length="209"/>
          </intron>
          <exon e_serial="3" e_score="0.551">
            <gDNA_exon_boundary e_start="111800" e_stop="111752" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115051" stop="114984"/>
              <exon start="112517" stop="112010"/>
              <exon start="111800" stop="111752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115017" stop="114984"/>
              <exon start="112517" stop="112083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115007" stop="114984"/>
              <exon start="112517" stop="112051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112517" stop="112018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGAGTCATTTCTCTGCAGCTAAACCCCTGCGGCTTTAGGTTCCAGAAACTTCGCTCATCGATTCAG : GTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAA : ATGACATAAACAGAGAGTTCAATATATCACAAATCCACAAAAAGAAATA</gDNA_template>
            <first_frame> L  E  S  F  L  C  S  *  T  P  A  A  L  G  S  R  N  F  A  H  R  F  R :   L  R  R  H  C  *  K  Y  G  Q  A  S  S  R  F  D  H  V  P  E  A  A  R  N  S  Y  R  S  T  L  *  E  M  *  W  E  V  C  D  L  *  F  I  R  P  A  L  H  T  C  P  S  L  *  *  M  Q  L  W  I  L  S  R  P  L  C  H  L  W  W  C  W  Y  L  *  C  L  L  L  Q  G  V  Y  S  A  G  E  R  *  G  W  L  S  K  D  S  Q  S  W  *  C  Q  D  R  S  V  L  *  T  *  K  I  W  F  Q  E  E  M  R  G  S  D  T  S  F  T  L  R  *  S  S  L  L  E  F  C  T  S  I  I  V  S  K  L  G  I  *  V  *  P  M  Y  L  L  T  I  L  P  C  N  L  L  Y  Y  I  L  I  S  Q  :  M  T  *  T  E  S  S  I  Y  H  K  S  T  K  R  N  </first_frame>
            <second_frame>  S  S  H  F  S  A  A  K  P  L  R  L  *  V  P  E  T  S  L  I  D  S   : G  *  D  V  T  A  R  N  M  A  K  H  H  P  D  L  I  M  C  R  K  Q  P  G  I  A  I  G  R  L  C  E  K  C  D  G  K  C  V  I  C  D  S  Y  V  R  P  C  T  L  V  R  V  C  D  E  C  N  Y  G  S  F  Q  G  R  C  V  I  C  G  G  V  G  I  S  D  A  Y  Y  C  K  E  C  T  Q  Q  E  K  D  R  D  G  C  P  K  I  V  N  L  G  S  A  K  T  D  L  F  Y  E  R  K  K  Y  G  F  K  K  R  *  E  G  R  I  P  L  S  P  F  G  E  V  H  Y  W  N  F  V  L  A  *  L  C  Q  N  *  A  F  E  Y  S  L  C  T  Y  S  L  Y  C  L  A  T  C  C  I  T  Y  *  Y  H  K :   *  H  K  Q  R  V  Q  Y  I  T  N  P  Q  K  E  I </second_frame>
            <third_frame>   R  V  I  S  L  Q  L  N  P  C  G  F  R  F  Q  K  L  R  S  S  I  Q  :  V  K  T  S  L  L  E  I  W  P  S  I  I  P  I  *  S  C  A  G  S  S  Q  E  *  L  S  V  D  F  V  R  N  V  M  G  S  V  *  F  V  I  H  T  S  G  L  A  H  L  S  E  F  V  M  N  A  T  M  D  P  F  K  A  V  V  S  S  V  V  V  L  V  S  L  M  L  T  I  A  R  S  V  L  S  R  R  K  I  G  M  A  V  Q  R  *  S  I  L  V  V  P  R  P  I  C  F  M  N  V  K  N  M  V  S  R  R  D  E  R  V  G  Y  L  F  H  P  S  V  K  F  T  T  G  I  L  Y  *  H  N  C  V  K  I  R  H  L  S  I  A  Y  V  L  T  H  Y  I  A  L  Q  L  A  V  L  H  T  D  I  T   : N  D  I  N  R  E  F  N  I  S  Q  I  H  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112512" stop="112162"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVTARNMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="111876" PGL_stop="112312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111876" e_stop="112312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="111876" e_stop="112312" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111876" stop="112312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTACATCATGATAGAAAATTAACTGAAGTAAAATTTTCACAAATTACACCCAAAAGAAACTAGATCGGAAGTCGATTAGCGTTGGCATTTTGTTGCATACCCTTGCACAAAACGAAATTACAATGGGTTAAACTTGTGATATCAGTATGTAATACAGCAAGTTGCAAGGCAATATAGTGAGTAAGTACATAGGCTATACTCAAATGCCTAATTTTGACACAATTATGCTAGTACAAAATTCCAGTAGTGAACTTCACCGAAGGGTGAAAGAGGTATCCGACCCTCTCATCTCTTCTTGAAACCATATTTTTTACGTTCATAAAACAGATCGGTCTTGGCACTACCAAGATTGACTATCTTTGGACAGCCATCCCTATCTTTCTCCTGCTGAGTACACTCCTTGCAATAGTAAGCATCAGAGATACCAACACCACCA</gDNA_template>
            <first_frame> C  T  S  *  *  K  I  N  *  S  K  I  F  T  N  Y  T  Q  K  K  L  D  R  K  S  I  S  V  G  I  L  L  H  T  L  A  Q  N  E  I  T  M  G  *  T  C  D  I  S  M  *  Y  S  K  L  Q  G  N  I  V  S  K  Y  I  G  Y  T  Q  M  P  N  F  D  T  I  M  L  V  Q  N  S  S  S  E  L  H  R  R  V  K  E  V  S  D  P  L  I  S  S  *  N  H  I  F  Y  V  H  K  T  D  R  S  W  H  Y  Q  D  *  L  S  L  D  S  H  P  Y  L  S  P  A  E  Y  T  P  C  N  S  K  H  Q  R  Y  Q  H  H   </first_frame>
            <second_frame>  V  H  H  D  R  K  L  T  E  V  K  F  S  Q  I  T  P  K  R  N  *  I  G  S  R  L  A  L  A  F  C  C  I  P  L  H  K  T  K  L  Q  W  V  K  L  V  I  S  V  C  N  T  A  S  C  K  A  I  *  *  V  S  T  *  A  I  L  K  C  L  I  L  T  Q  L  C  *  Y  K  I  P  V  V  N  F  T  E  G  *  K  R  Y  P  T  L  S  S  L  L  E  T  I  F  F  T  F  I  K  Q  I  G  L  G  T  T  K  I  D  Y  L  W  T  A  I  P  I  F  L  L  L  S  T  L  L  A  I  V  S  I  R  D  T  N  T  T  </second_frame>
            <third_frame>   Y  I  M  I  E  N  *  L  K  *  N  F  H  K  L  H  P  K  E  T  R  S  E  V  D  *  R  W  H  F  V  A  Y  P  C  T  K  R  N  Y  N  G  L  N  L  *  Y  Q  Y  V  I  Q  Q  V  A  R  Q  Y  S  E  *  V  H  R  L  Y  S  N  A  *  F  *  H  N  Y  A  S  T  K  F  Q  *  *  T  S  P  K  G  E  R  G  I  R  P  S  H  L  F  L  K  P  Y  F  L  R  S  *  N  R  S  V  L  A  L  P  R  L  T  I  F  G  Q  P  S  L  S  F  S  C  *  V  H  S  L  Q  *  *  A  S  E  I  P  T  P  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0072J06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 268 chains have been computed
$ 
$ memory statistics:
$ 345256 bytes spliced alignments in total
$ 113 spliced alignments have been stored
$ 3055 bytes was the average size of a spliced alignment
$ 28336 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1574 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 320 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 08:48:50
-->
