<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 23:28:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252199" ref_strand="+" ref_description="SGN-E252199 [cLEG-8-F14]">
      <seq>cttgatgagaatttgtcttatgaggaggagcctgttgccattttagatagagaagtccgcaaattgaggtcaagggagattgcatctatcaaagttcaatggaagaatcgaccagttgaagaatccacttgggagaaggaagttgatatgcgagaaagatacccatacctgtttacagattcaggtactccttttcgcccttgtttttcttcttgtgatcgttcggggacgaacgatgggtaaattggtatctattgtaacgacctgtttagtcgttttgagtaacagattttatttctggaaaaactgactgagacgacggatcccacgacggaccgtcgagggggtctcgttccaaaacacttagaattctgaaatttgggtactgaaatcgactctctgaacttcgtgacggaatggcaggacggaccgtcacaggcgtgatgggccgtcacagacccttggtaaaaatctagtctctgaactctgtgacggacgtgcaggacggaccgtcacagactgcgtaatcccaggctgggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="-" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="18889" stop="3938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18589" g_stop="18250" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18249" i_stop="4460" i_length="13790">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4459" g_stop="4281" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="518" r_length="178" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="-" ref_id="SGN-E252199" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18589" e_stop="18250"/>
          <exon e_start="4459" e_stop="4281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATGAGAATTTGTCTTATGAGGAGGAACCTGTTGCCATTCTAGATAGAGAAATTCGCAAGTTGAGATTAAGGGAGATTGCATCCATCAAAGTTCAATGGAAGAATCGACCCGTTGAAGAAGCCACTTGGGAGAAGGAGGCAGATATGTGAGAAAGATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTGTGATCGTTCGGGGACGTACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCATCAGATTTTATTTCTGGAAAAATAGGCTGAGGCGACGGACCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTAAAATTGGGTACTGAAAATTGACTCTTTGAACTTCGTAACGAAATGGCAGGACGGACCGTCACAGAGTCGTCAGTGGAAACCCAGTCTCTGAACCTTGCGACGACCTGCAGAACGGACCGTCGCAGGCACGACGGGCCATCGCAGGTTACGTAATCCCAGTCTGGGTCGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGTCTTCCGCATTATTTACTGTTGATATTATATTGAAATGTTAGAGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCACGGTCCGGATTTGGGTCGTGACAACACCAGTCCCTCATGGGCCTTGCCTGCTTGCCATAGGAACCCAATAATCCCTCCCAACACCTACCAACATGTTTGCTCTTGAGAATCGAACTCATGATCTTGACTCTGATACCATTTATTAGAATTAAGTGTTCATTCTCAAGTTATAAGTTATAACTGATAGCATATACACTATTTTATTTCATAACTAAATCGATCGAGCAAACATCATGATTATAACTCCAATCGAAGCCACACCAGCCCCTCGTGCGCCTTGTCATAAGATATTGGCATTATCCAACAAAATGTAAGAGAGTAAAACTAAAATAATATCAACTTTCCTTATTCTGAATTTGCATAGTTTAACACATCAATTTCATATTCTAAATAAAATTTATTTACTTTTAAGGTTGAATGAATGACCTTCAATGAAGCAATATTTATTTTATCATTTAAACATATATTTTTGAATATTAATTATTATTTTCAATAAATTTAAATATTTATCACTTGACATGATACGTACGCTGATCTAGTGAAAATAAAATTATTAATATTAAAGACTAATAAGGTTAATAATTTCAAAAAGAAAAAAGTTCTCAATATTTTCTCTTTTCCTTTATTGGTATTAATTTTCTAGATAACCAGTTCGGTTGAAAATTCATAAGTGAATTTTTTCATAAATCTAAGGCGAAAAGAAATATTGACTATAACCTTAATGAAAATAAATTACTCCCCTCCATCCATCTTTAATTGTCATGATTTCTAATTTTACAGTTAAACTATTAGAATTTTGACTAACATTTTAAGATGTATTTTTTTTATGATGATGATATGCAAAAACAATGCAATTTATATAGTACTTTTCATATAGTTTTAGAATATCTAATTTTTTTGTTTAGAATATCAAATTAATATATTTTAATTTTAACTTTGAAAATTAGTCAAATTAACTTTAATAAAACGCAACATGACAAATAAAAGTGGACAGAGGAAACAATACTTAATATTTTTTTTAAAAAAATATATTAGATCTATAAGTTTTCACACGTGGAGATTTAATTTTCTTATATGGTCACTCAACTATCATCTATTTTCTCAGAAAGTCACTTAACTTTGTATTTTACCTCAAAAGTCACTCAACTATCAATTCTTCGATCAAAAAGTCACTCAGCTTTGAATTTTAATTCAAAAATCACTCAACTATTAATTGTTTTCTCACAAAGTCACTCAACCTATTTAATTGATATTTTAATTTAAATTTTCTAATTTAATTCTTTTTATTTAAAATCCAAAATTTTAAAAAATTAAAAAATATCATTTAAATCATTTAATGACCCGCCCGTTAAAAATATACTATTGACCCATTTTATTTACTTTCTGAGAGAACAATTAATAATTAAGTGACTTTTGAGTTAAAATTCATTGAGTGACTTTTTGAGAGAAAAATTGATAGTTGAGTGACTTTTGCGATAAAATACAAAGTTAAGTGACTTTCTAAGAGAATAAATGATAGTTGAATGACCATATAAGATATTAACTCCAAGTTCCAACCAAATGGCTATGAATATTCAAATACAGAAAAAAGTACTTTTAGAATTTTTTTTATTACTGTTTTTTCCTATGTATGTTATGTACTATTGATATATACATTATTTCGTTATTATTACTTGTTCTTGTATTTCCTTTGTCAAATTGTTGGAAAATTAAACATTATATTTTAAGATGAAGAGACGAGATATGATACATTTTGTATACACTTTGTTCTTTATTTAATTTTGAGTTGTAATTATAAAATTATATTGAATATGTTATTATTGACGAAAAAAAACTGGAAAAAGTTACCAGAGAAATAAGCACCGAAAACACAATAAATTCAAATACTTAATTTCGTCATAGTTCACATTTTTCATACTTCTCTATCGCAATTCTTGTGAGGGAATTTAAGTACAAGATTAAAGCACTTAATTTTCACTTTGACTTTATATACAAATTTTGTAGTATTTGATCGAAATTATTAATTAGATGACTTATGAGTTTCTTTTTAAAGCAACAATTTACAATTATCACTATACATATTACTGATCGTCAAAAATCCTTACAAATGAACAAATTTCCCTGTTTTCACAATCTTGATTAATACAAAAAAAAAAAAACATAGTATGTATTTATACATTATACAAATATACATGGTTTATATAAAGACAAATAATGGGTTAATTGATTAATGAACACCTTTTATGTGTAGGTTTTAACCTAATAACTATTTTCTATCGACTTTTAAAAAATTAAAAATAAATTCTATATAAAAAAAAATACTATAAGTCAACATAATGAATAATTTAATTATTTTCTTTTTGGAAAAATCATAGTCAAATTAAAGATTTGACAAATATAAGAAAGAAAATATCTTTCTTATTTTTTCTTTATAGAGAGGTTGGGATATTAAATGCATCATTGCTGCAAAATATCTACATAAAATTTATGGATCAAGTCTATGGATAGTACATATTCTTTGATATGCATATGAGTAAAACTTAAGGTGTCCCCACATGAACTCGGAATTTGAAGATTTCGAATATATTATATTATTATTATCTCAATTTAAATATGAACTCTAAAATAAATTTAAAATAAAAACAATGAAATTATAGTGTAGTTGGATTCAAATCCAGGTCTTGCGGGTGATTCCTTTAGCTTGTAGCAGCAATACAGTGGACACAAATGTTCATCATTGGTATATTGATAATTATATTATAATTTATGTCAGTTTCTCAAGATAGATATACATCTATATACACATAATTTTTTTCAAAATTGACAATTATACATGTACCACGCCTGTTTGGGTGGGTCCGCTTATGAACAGCAAGATTAAAAAATTGGTGAAGGATGTAGAATTTTCTTTTAAACATACATAAAATTTAATATATGATCATAATAATTAATAGGGAAAATGTACAAATATCCTCTTAGATTATGACCAAAATTTTAAAGACACACTTAACTAAATTAAGTTCTTATTACTCGTTGAACCTTTTTTTTTGTAATTTTGTGCACCTTTTGGCTTACGTGAATCTAAATATCTCCGATGCACCTTAATTATGTAGAGTCATGAAGTATGTCACATAAGATAAAAGGTGTATAAAAAAATTTTAAAATAAATTCGGAAAAATAATATGAACTTAGTTTAGTACCTTAATTAACCCTAATTTATGTTTAAACTTTATATAGCACTTAGCGGTTTTGACAAAGTTTATTGGAAAGCATAAACATATACATGTCAAATGAATATGTCTACGAGATTGAACGAAAATATGAAAGAGTATAGATAATGAAAGTTACATTACTCTGACTATTTATAGCATAATCTTTTTTCTTTTTAATTAGAAACAAGTTACTTTGGAATTGATTATTTTTAACATAATAAGTTATTATTATATATATATATATGATAAAGAAAAAATAATGTAAGATCTCCAACGTACTAAACATAAAATAAAATAAAATATAAAATTGTATTTTATTTTGAAATTATTAAAGAAAAAATTAGTGTTAACTAATCATATACTAGTTAATTAGTCATCATAGCTAAAGTTTTAGTTGATTATAATTTGCGACCAACATTCAGTGAAAATTGTGTAAACTGGGGTTTTGAGTTTGTATAGTCCGCATGTTTTTATAAATCAAGATTTGTATAAGTGTTTAAAGTTCAGATGTTTGTGTTCGTATAACTTCGTTATTTCAAGTTTATATAAAAAAAATATAGCTCACTTTTACAAATGTACTATAAGTCTATAATCCACAAGTATGCAAACTATAGCTACAGAGAACAATTAAGTTTATTACAGTAACTATTTACAAAAATTCATCGATATTAAATTTTATAGGTCACATCACACAACTAATTCCTAGCATAATGAGAAAAGGACTAGAGATTGAAGTAGTCTACGCAAAAACTTTTCAACTTTTTTATATCTTGTTTAGATTTCCTATTTTATAAATAATCAACAATATTGTTAGTCTATTTCTATTGTTAAAAAGGGATAAACAATTTGTAATTTGAATTTCTTATCTTATGTTACTCGATTGTCATCTATTTTGATTTAATTATTCGATTATTTTAAAATAAGAAAAGGACAACAATTCATTCAAAAGGAAATAAATTCTCTTAGTATGGTTTTGAATTTTATAATTTCTTATATCTAAACTCAGATATGTTTAACTTCTTGCTTATATTATTGCCTAATTTAATATACTAAACATCATAACTTACTAAATAATGCATAAGTTATCGATCTTGTTGCACAAATAAAATATGCTATTATTATATCTTATATGCATAAAAACAATATATTATGTATATATAACTATAAAAAAAAAGTATGTTTATAATTTATCTGTTTGATTATTTCTTTGATTACATGGAACAAAATTAAAATCAAAATCAAATCAATTATTATTGACTTTTAACAATGTAAAACGAAACCAAATAAACAAATATTTGGTTTGGATCGTTTTTTTACCAAAATCGTGAACACTTTTATCTTATGCCAATGAAATTTTACTTAGTGAGATATAAGAGAATAGAGTGTGCACTGATTTATCATTATCTCGTAGAGGTAGAGAGAGTAATTTCAAAAGAAATTCAAAACAAATAGAGGGGAAAAAACCAATAAAAAAAATGTATATAATTTAACTATCGAAAATTAAATATTAATAACAAATTAAAGTGAGAGAGCAATAGTTCTTACATCAATTTTTTTTAATGAATTTAAATATTAACTTTAGGAGATGTAAACTATTTCAAAATTAATTCAACACAAAAATAATGATCTTTAAACTATATTTTTATATTAAGAAATTATTTTTCTTATATTTATATTTTTTTCTTAATAGACGGAAATAAACTACTAAAAATATGCTTATTTTAGAATGAAAAAAATAATATTAATTAATTAGATGACGGTACGAAAAATCAAATTTGTGTATTTGTATATCTGTGGACTGTGGACTGTGTTAGTTGATTTTTCAACATTATTAAATGGATAACAACAAATAGTAATTGTTTACAATAAATTTGGATGGTCAAAATTTATTTTGAATTTTTACTCTTTCAAAAATATTTTTTCGTAGAAAAAACAAATTTAATGTGATGCATTATGTTTAAACTGATATCATTGCCAATGGCCAATATGATGCATTATGTGAAATTAGCTATCGATTTCCTTGCTAATCATTCTTTTAATTATTCGTAAATCGTAACTAACAAAATCTTTTGAAAATCCATTGCTAAAGCAAAGGGTTTGCCTTCTGGTCAACTCTTCGGGGATATCTAGTGGTTTGGACTTAAGATTTTCAAGTTGGAGGATTCAAAGTTCGAAACCCCTTACAAGCGAAAGTAAGGGGTTTGCCTTCTGGATTGAGTTCGTCACACTAGACTTGCCTAGTGCGACTTATCTCTCCTGTAGGATATGCAAGTTCTTCCATAGAAATGGGGATTTTACCTGAGTGCACCCAAAGGTAGTGTCTGCAGGTTTCTCTGGTCATCAAAAACTACATAATTTGCTCTTGGAGTTTGACAAGAAATATCGATTTCCTTGCCAATCCATCTTTTAATTATTCGTAGCTAACAATAATCTTATGATAATCCATCTCTAAAGTAAGGGGTTCGCCTTATGGTCAACCCTTCGCAGGGGTGGAAACAACATATACTTAGGGGTCATGCGAACCCTTTCAGCAGAAAATATTACAATTTATGCATGGTAAAATTATTTTTTTAGATATGTAAAATAGATGTGGAATCCCTTTCCACTAGTTTGTGTGTTTAACTTCTCAGATTTTGAACCCCTTACTAAAAATTCTGACTCCGCCATTGTCCCTTCACCTAGTGGTTTGAACTTGGAATTTTCATGTTGGAGGTCTGAAAGTTCGAAACCCCTTGTCAGCCAAAGTAAGGGGTTTGCCTTCTGGATCAAATTCGTGCAAGTTATTCCATAGAAATTAGGTTTAAACTTGGAGTTTAAAATAGTATACTATATGATGCATTATGTTTAAACTTATAGCATTGCCAATGACCAATATGATGCATTATGTGAAATTAGCTATTGATTTTCTTGCTAATCTATCTTTGAATTATACCTAACTAACAATATCTTTTAATAATCCATCGCTAAAGAAAGGTGTTTGCCTTCTGGTCAATCCTTCGGAGGAGCGGAGGCAGCATATAGGGGTTCATCCGAACCCCCTTCCACTAGTTCGTGTATTTACTTCTTAGATTTTGAATCCCTTATTAAAAATTCTGGCTCTACTCCTGATTTTCAGGGTCCCTAGTGGTTTGAACTTGAGATTTTCACGATGGAGAGCTCAAAGTTCGAAACCTCTTGCCAGCGAAAACAAGGAATTTGCCTTCTGAGTCGAGTTCCTAGTACGAGTTACCTCTCTGGTATGGCATGGAAGTTATTCCATAGAAATGGGGGTTTTACCCTGTGAACAGATATTGGAATGTGAACGGAGCCTCTTGTACGCGGGAGAGGGATTTTAACATGACAGTTCCTAATAATAAAGAGGTTTACAGCAATGTAAAATGTAATCGTTCATTCAATAATGGCTGAGTTTGCCATGTCGTAGTAATGTAAGCTCTTGCTTTTGATCTTTGTAACTTCACATTTTACTCTTAAATCAGAAAGTGCATCATGTAATGAGAAATTCGTATGCTTTTTTTGTTGTTGTTGATACAGCCAATTGAAGCGTCTTAGTATGACAGGAATTCTGCCTCCAGAATTTGCAAATCTTACTCATCTGCAAGAATTGTGAGTATCGTTTTGGGCTTGGAACTTCCATGTCAGAGGTCTTAAGTTCAAGTGAAAGCAAGGGTTTTGCCTTCTGTCTGTGTGCACAATGGGGTTTTTACCTGTGGCTTTATCAATTTTTTTCTTTTCCAGAGATCTGGCTCGTAATTACTTAAGTGGATCGATTCCCTCAAGCTATGGCCAGCTTCGTAAATTTAATTATCATCTCATATTGAACTTGACAATTAAACTTTGTGAAGTTGCATGAAAATCTCTATTTAAAAAGTAAGTAAAGAGTAGATAACGTCCAATTTTTGTTTGAATTAATATTATCAACTAATCTCATATTTATATTCTCTAGTATATTTTTGGTATAAGCAACAATTAGCAATCTACAGTATGATTGAAGTTTCAGAGACACTATAACTAAATTAATGTCTTACTATCTCGAATTTCCTTTTTTTGGTAATTTTATACATTTTTTTGGCTTATATGACATTCAAATATCTTTCACGTGCCTCAACTACGGTGAGTCAATGGAGTGTATCACGTAAGCCAAAAGGTTTATAAGTTTTAAAAAAATGAGTTTATTACAACCTTAGTTTTGTTAATGCGTGTCTCCAAGATTTCGGTTATAGTCTAAGGGTACTTGTGTCTTATCCCTATATTTTTCATAATTAATACTCCATCTATTTCTATTTACTTGTTCATTTTTGGCTTGACACGCCTATTAAAAAAATAATTGACATATCATTTTTCCCCTATTAATTAATAGAATTCCAAAATTAATTTACTCATTAAGAGATTCTACGTTTATTTTTTCAAAAATATTAACTCTCTAAATAAGTTGAGGGTATAATAAATAAAGAAAATAATTTTTTTTCTTGATTCATAAAAATGACGAATAAAAAAGGATGGAGGGATTTTATAGGTTTTTACCCCCCCCCCCCCCCGCCCAATTAATTGATAAAATCCCAAAATTAATTTACTCATTAAAGAGATTCTATCTTTATTTTTTCAAAAAGATTAACGCTCTAAATAAATTGAGAACATAATAAATAAAAAAAAAAAATTCTTTATTCATAAGTATGACCAATAAAAAAGAACGAAGGAAATTTATAGATTTTTTGAATTTTGGAAAATTGATGAAAGTATATGAACTATGAAGCCGATTTGAATAGAAATAAAGACTAAAGTAAGAGTTGAAAATTACGCAAGATTTTTTGTGTTAATTCATTCTTAACGTCAAAGAAAACTTTGATTTGTATTAGCATATTGTCAATTAAGAATTAATAAAACATTATAGTAAATTATCACATGATAAAGTAGTTGACCATGCAAAAAAGAGTCGTTGGCCAAAATTACTGTTGTACAGAAAAGTTTCATGGGATAAAGTGTACTGACCTTTCATACACGTTCATTGAATTTTCAATTATATTCTATATAATATAATAATAATAATGAAAAGGAAAATAGAACATTATTTTATCGATTACTTTTTACCTTTCTATTTGGGAAAATACCTTAGTACCTCCTCAACCTATGTCCGAAATTTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCTGAGCTTATTTTATATGTAATTTTCTACCCTTTTTTAGCCTACGTGACACTAGTTCGAAAAAAAAAGTCAGTCATCGTTGGGCCCACAAGATAGTGCCACGTAAGCTAAAAAGGGGTAAAAAATTATTAATAAAATAAGTTCAGGGGGTAATAAGACCTTAGTATAGTATAAGTGTATCTCTGAGATTTCGAACATAGGTTGAGGGGATACTTGGGCATTATCCCTTTCTATTTTAATAATCGGTCTTTATATAATAAGAGAAAAAAAGTAAACTTGATGAACTACATCTTTATTTTATTAAGTATTTCTTTAAAAAAAATGGTATGAAAAATATTTTAATTTTAATCGAAATTATTGTTAGATGTCAAATTTTATAGAGGATCTTTTACCCCGTCACTAATTAATACTCCATCTGTTTCATAAAGAATGATCTAGTTTAACTTGACACGAATTCAAAAAAATAAAGAAGACTTTTGATCATGTGATCGTAAATTAAAGTTATGTCAAATATACAAAATTATTCTTTAATCTTGTGGCCTTAAAAAATATTTCAACGTGGAAAGTTGTTACCAAAAAAAGAAAGAGGTCGTTCTTTTAAACAGACTAAAAAAGAAAGGAGGTCATTCTTTTTTAAACGAAAGAAATAGTATATTTTGAAGGTATATATATGTTGTGTGGACACATTATTATTTATAATTATGCAATATTTATTATGTCTACGTGGACACATATATACTTTTAAAATACATTATTAAATAATGTAAAGAGTAAAATATCCTTTTTAAAATTTGATATTGTTATAATAACTTCGATCAAAATTTAAATATACTTAAAACTTCCTTCTTTTTTTTCATTTCCTTACCAAATTGGCTCTTTGAAGTTAGATTTGAGCATGAATTGGACAAATAATAAATGTTATAAGTAGATATTAGAACTCAATAATTTTCATAATGTACATTGGAATGACAATGATATGTTGGGACTTTGTCGCATTGGTATTTTTTTCTGTCTTTTTATTAAAAGAGATTTATATAGAAAAAGACTAATCAAAGTTGACATTCTATAGATTAATTTAAATGTTATCAACTCTCTAGGTTTTAATTATTTATTTTCTGTTTATTTAAAAAAAATATTTTTTTTTAACATTTTAATTTTTCACTTGCATGTTTCATATCATAAGATTAAAAAATATTTTACTATATTATGCATATCTAAAGTTTAAGGCCACGTTACTTTCTCAACTCAATATCAAGTTAAAAACGGATAAACAAACTGCAAAGAGGTGTGATAACTTCAACACCAACATTAAATTCAATATAATTTCATAAGTCGAATGTATAAAAAATATAATATGCAAAACTTACCCTTATTTTTGTGATAATAGATAAATTATAATTGCAGACTCGCAGCTCAATTTTTTTTAAAAAGCAATTGAAGTAGTTTTACTTTAATCATAATTTTCTAAAATATCCTGAATTATTAATATCTAAGGCATTAATTTTGATAATTCCTTTGCCAACTGTTTTATTGTAGGTGACAGGTTGTGACTTGTTAGGCTGATGGCTCTACTAGCTGCACAATATTCTGCACATTTTTGGAGTATCATTCAACAAGTGTTTCTTTCTTACCCATTGCGTTTTTGCTGGTAAAAATATTGCACCTTTAATCATAATTTTAGAATTTGAATCGTGAACATGAAAAAGATTTTTTTGAGAGTGTCATTTTCAAATTATAAATCTTACGGTGTACAATCTGAAATTAGTCAGAGCTCTAATGTGGAGTTCGGCATCAGATAAAAAATAGTAAAAGAAAGTGTTTCTTCATCTTTATAGTTGTATGATAAATTGATAATGTTTAATTAGCATTCTTATTTGTCTACTATTTTTAAAAATTAATTTTATTTCTATTTATTATTTTAAGAAAAAATAATTATTTTTTCTTACTTTTAGCATTAGTTTTTTATTTTCAAAGAAGAAAAAAAGAGGTTACATGCATGAGTTTGTTTATCCAATTATTAGTCTTAAAATAATAATAATACTTGTGTAGGCTCCTCCTATACTATATGCTTTCTAGCTGAATGTTTTTGACTGTCTTTCTTCATCTGCATGCATGTATGGGTGCAATTATTATTATTTTTCTTCCAATTAATTATGTCTAGACATGTAGGCTTTTAATATCTCATTAAATTACAACTTAAATTTAAAAAAAAATAAAAAAAAGTTAACTGTTTTCACACATGGAGATTGAATTTTCTTCCTTCCCTCCAAAGTCCAAACCAAATATTCACATAGAGAAAAAAAAAAGTTTTCTTTGTTATTTATGTTCTTTCCTTTAAATTTGTGTGTTATGTACTATTGATCGATCTCGAATTATTTTGTTATTGTTATTGTCACTTTCTTATATTTTATTTTTCAAATAATTTAAATATTAAATATTTTATTTTTAGATAAAGAGACAAAATATGATATGATTTATGTATACTCTGCTCTAAAGCCGTCAATATAGGTTAGGTCTGTTGGGTCTGCCTTGGCCTAACTCGGAATTTAATAGGATTAGACTACAATTTTTGGAGCCCATTTGAGAGAAGAGCTTTTTAGCCCGGCTCAAATAAGCTTGCTGATTTGTGGAACTTGGGAAATATCGATAGGGCCAGCTTTTGGGCTAATAAAAATTAATTAAAAAATATAATATAATATTAAAATTTAAAATTAAAGAGAGTTCAAATTCAAAAAAGTTATGTTAATATTTCTATCTAGGTGTTTATACTTTATTTTTTAAAAAAAACTTAATAAATATTATAAAGATAATTTATTTGTGGATTTGATTAAAAACTAGTAACATTAACATCATGTAATATTATTTTATCGATATTTATGATAATATTTTTAAATTATAATTTATAATTTAATTTTAATAATTCTAAAAATAATATAATTTTAAAAAAATTGAGCTGGTCCGACAAGCCTGTAGCCCACGTACTTGTGGGTTGGGCCGACCGTTTTCTAGCTCACACCAAAAATGGGCTAACTCGATCTGACCTGTAATATGTCGAAGCCTGTATGGATTAGCTCGAATGGGTGAACTAGCCCATATTGATAGCTCTACTCTTTTTAAATTGTACTTGTGAAATTATATTGAATATGTTATTATTATTGAATGAGAAGAAGGAAAAAGTTAAAAGAGAAATAAGAACCAAAAACATGATAAATTCAAATACTTGCATATATAAATTATTCATAGACTCATAATTCATACCTCATAATTGTCTATTACAGATCTTGTGGAGGAAATTGAATTACAAGATTAAAACACTTAATTTTCACTATAGATTTATGTATAAATTTTGTAGTATTTAATCGAAAATATTAATTAAACGATTTATTACAAGCTTTTTGTTGAGAGAAACGGATGATGCACATTTCAGTATTTATATACATTATTATATATATAATTATACAAGATTTATATATAGTATACTTTTTTATGAATGGATCTTATCTGTTTATTTTCAACCGATTGTACTATTTATATATTTATGGACCCAACCTTATAACTATTTTCAACTAACTTATAAAAATATTAGAAAAAAATTTATGTATTTAAAAATTACATGAGAATTAATAATAAGTCAACTAATCATTTTAAAAATTTTCCTCTTCTAGAGAGATTTGAATATTGGATATCAAGTCTTTGGATATTACATATATTATTTAATATGCATCAAATTGAAGGTGCCCCCTACCCTACCCTATCAACACAATTTCTTTTACTAATATCTTGTTTTTGAGGGAGAAAAAGTTTGTTTCCAAAATGTACAAAAAGTGAATAGAAAACTAAAATCAAGAGGAAAATATTAAACTACATAAACCAACGACTCCATGCAGACCTTGATCTATTTGGTTGTCTTTAATTGAAAAAATGTGATGATTAGACTTTTAAAGGTTTTTTTGGTCGATCGTATTAGAAGAAATATTTTGTGTTATGTGTAATTTTTTTAATATTATGTTTGATAGAAATTTGGGGAAGGGAATCCACAGGAAGAAACAGAAGCATAAGTGTATGTATAACTAATTCATGAATTTATAAGATATATTATTAATAGGCTTAAGTTATCTGCAGCCCCTTAAAATTGTCCGCAAAATTCGCTTAGACATCTTAACATGTTCATTTTTCTATTAGACACTCAAACCTTAAAAAATAAGTACATATCAAACATTTTTTAAAGACCTGGTCAAAAGAGAAAGTGTGTGTAATGCATATGCAACTGATGTGACAAAATAACAAATCAAATGAAGACATGTGACATTTAAATTTAAAATAATTCTATAAATGAATTTTGAAAATAAAAGAATCTAAATAAATTTTAAAAAAAAGAATTTCAATTTTTTTTTAAAAAAAAGAAAAATTCATGTTACCACCCTCACACCCATCTGCACCCTCACCACCTCAAATCTTTCCTTTTCTTCTCTCACTAAAATCACCTCTTGTCCATCGTTGTTATTTTCCAAATGGAAATTTAAATATATACTAAGTATGAATTTATCTTCTTTTGTTTTCTTTAGTTCTCTTCATGTTTTTTTTTTGTTCCTATTTCAAAATTGGTAGTATATTTTTTCTTATAAAAAAGAATATGTTCAGTGTCTTTTTGTTTTGATTTAAATTTACTTTATGTTCTTGTTTTGTAATGAAGAAAGAAGGGGTGTGAACCTGAAGCTGTGTGTGTGAACTCTATATTTTCCGGGGGCCTCCATATTTTTCGGCAAAATAAAAATGGTGATGTCCATTATTTTCGGCAAGAAAACTTAGATTATATTCTTTCATTTTTTATAACAAAGGAAATAAATACTTACATTTCTTATTAAATTTAAGCATAAGTGTAACGACTTGTTAGTCGTTTTGAGCAGCAAATTTTATTTTTGGAAAAACTGGCTGAGACGACGGATCCCACGACGGACCGTCATGGGCACGACGGACCGTTGAGGGGGTCTCGTTCCAAAACACTTAGAATTCTGAATTTTGGATACTGAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGATGGGCCGTCACAGATCCTTTAGTGAAATTTAGTCTCTGAAATTTGTGACGGAAGCAGAAGGACGGACCGTCGCAG</genome_strand>
        <mrna_strand>CTTGATGAGAATTTGTCTTATGAGGAGGAGCCTGTTGCCATTTTAGATAGAGAAGTCCGCAAATTGAGGTCAAGGGAGATTGCATCTATCAAAGTTCAATGGAAGAATCGACCAGTTGAAGAATCCACTTGGGAGAAGGAAGTTGATATGCGAGAAAGATACCCATACCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTTCTTCTTGTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGTAACAGATTTTATTTCTGGAAAAACTGACTGAGACGACGGATCCCACGACGGACCGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="18693" stop="19470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18993" g_stop="19169" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18993" e_stop="19169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCGCGAAACATATCCTCCAACACTTGAATAGTTCTCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="29686" stop="30997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29986" g_stop="30697" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29986" e_stop="30697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACATAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGTTTTTTCTCCCTCAACATTTCTAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTCGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAA-GAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTTCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="29686" stop="30881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29986" g_stop="30581" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29986" e_stop="30581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACATAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGTTTTTTCTCCCTCAACATTTCTAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTCGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAACTGCCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="29686" stop="30811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29986" g_stop="30511" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29986" e_stop="30511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACATAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGTTTTTTCTCCCTCAACATTTCTAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTCGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="29757" stop="31034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30057" g_stop="30735" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30057" e_stop="30735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGTTTTTTCTCCCTCAACATTTCTAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTCGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAA-GAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTTCGCGGGGGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="29757" stop="30715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30057" g_stop="30415" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30057" e_stop="30415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGTTTTTTCTCCCTCAACATTTCTAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTCGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="30206" stop="31463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30506" g_stop="31163" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30506" e_stop="31163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAA-GAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTTCGCGGGGGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATAGAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACAGACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCGAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGTATCGGCTTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCATAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="-" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="32299" stop="30294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31999" g_stop="31826" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31825" i_stop="31085" i_length="741">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31084" g_stop="30558" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31999" e_stop="31826"/>
          <exon e_start="31084" e_stop="30558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGGATTTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGTATACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACTATGGCATCGATGTCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTTCGGAGGTTACTCAGTCCGACCAATTCAGTCTTCTACAGACTGTAGTTGGGGGTCCGCCTCAGACCGTCAACACTTCTCTGAGGGACCTATGCTTGAATCCAGAGGGTGTTATGGATGTGGGGAAACTGGACACATTAAGAGGTATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTTATGGAAGAGGCTGTCATTCTGGTGGACGCGGTGGTCGAAGTAATGGTGGTCACTAAAACGGTCGGGGTGATGGGAAAACTGGAGCCACTACATCACAACAAGGTAGGGCCAACGGACAAACAAACGAAAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCAGAAGCGGAGACATCAGATGCTGTCATCACAGGTAATCTTTCGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGTTCCACATTTTCTTATGTATCTTCTTCATTTGCTAATGGTCTAAATTTACCTTGTGAATTACTTGACATACCTATTCGTGTTTTTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTTGTTTGGTGAATTTTATGGGGAGAAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGACTTTGATGTAATTTTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAAGCCGATACGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTCGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTCTGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTCTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCCCCCGCGAAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTC-TTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGA-TTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="30275" stop="31635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30575" g_stop="31335" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30575" e_stop="31335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAA-GAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTTCGCGGGGGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATAGAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACAGACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCGAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGTATCGGCTTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCATAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAAAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGA-ACCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="30275" stop="31534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30575" g_stop="31234" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30575" e_stop="31234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAA-GAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTTCGCGGGGGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATAGAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACAGACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCGAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGTATCGGCTTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCATAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAAAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="30677" stop="31603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30977" g_stop="31307" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30977" e_stop="31307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCATAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAAAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGAACCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="31602" stop="32922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31902" g_stop="32622" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31902" e_stop="32622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAATCCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCATAGTCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTAGTTGAAACTCAACATGTGACCGCCACCACATTTTGGCGTTTCCTTGGAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACTAGAAAATCATAGGTATCCTCAGATTCAGCACCCTTTAAGACTGGAGGTTTCAATTTCAAGAACTTAATGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTTAGACGTGGAAACGTGCCTATGTCCAATGAGACATCCATACGATGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCGGGGGTAGGCTGGGGTGGCAATCCCTCATTTTGCACTTGTTCATTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAA-TCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="31606" stop="32869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31906" g_stop="32569" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31906" e_stop="32569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCATAGTCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTAGTTGAAACTCAACATGTGACCGCCACCACATTTTGGCGTTTCCTTGGAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACTAGAAAATCATAGGTATCCTCAGATTCAGCACCCTTTAAGACTGGAGGTTTCAATTTCAAGAACTTAATGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTTAGACGTGGAAACGTGCCTATGTCCAATGAGACATCCATACGATGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCGGGGGTAGGCTGGGGTGGCA-ATCCCTCATTTTGCACTTGTTCATTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCA-TTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="31961" stop="32994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32261" g_stop="32693" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32261" e_stop="32693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTAAGACTGGAGGTTTCAATTTCAAGAACTTAATGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTTAGACGTGGAAACGTGCCTATGTCCAATGAGACATCCATACGATGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCGGGGGTAGGCTGGGGTGGCAATCCCTCATTTTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550201" ref_strand="+" ref_description="SGN-E550201 [TUS-5-H25]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacatttatgttcttcctacttaaatattattattattttacgatttataacactattagaaacaaagattttctcnaccatgaattaatgaaaaaattatgccataaaatataaaaaatttactcatttttcattgagctaattcataaaaaaaaaaaaaaaaaactcgagggggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="-" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="49982" stop="48823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49682" g_stop="49019" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="718"/>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="-" ref_id="SGN-E550201" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49682" e_stop="49019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAAT-AAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGCCTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCTTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATCTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAATGACTAAACAGGTCGTTACAATTTTACCCTTGAGAGTTATTAATCTTAAAAATATGAATTCGACCATTACATAAAAGTTAAATGATAAATTCATGTTCATTGATTATTTAATTAATCACAATAAATTA</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACATTTATGTTCTTCCTACTTA--AATATT---ATTAT-TATTTTACGATT-TATAACA-CTATTAGAAACAAAGATTTTC-TCNACCA-TGAATTAATGA-AA-AAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231589" ref_strand="+" ref_description="SGN-E231589 [cLED-4-L18]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcatagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="-" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="49981" stop="48824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49681" g_stop="49124" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="-" ref_id="SGN-E231589" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49681" e_stop="49124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAAT-AAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGCCTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCTTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATCTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAATGACTAAACAGGTCGTTACAATT</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCATAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241959" ref_strand="+" ref_description="SGN-E241959 [cLED-27-I11]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="-" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="49981" stop="48837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49681" g_stop="49137" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="-" ref_id="SGN-E241959" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49681" e_stop="49137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAAT-AAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGCCTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCTTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATCTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAATGACTAAACA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236652" ref_strand="+" ref_description="SGN-E236652 [cLED-13-L8]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="-" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="49981" stop="48910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49681" g_stop="49210" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="-" ref_id="SGN-E236652" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49681" e_stop="49210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAAT-AAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGCCTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCTTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATCTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396070" ref_strand="+" ref_description="SGN-E396070 [TUS-18-P18]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtaccgggggggggagtttctaattgttttgaaactagactcctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="-" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="49982" stop="48971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49682" g_stop="49229" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="-" ref_id="SGN-E396070" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49682" e_stop="49229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAAT-AAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGCCTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCTTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATCTCTAAGTGTTTTGAAACGAGACCCCTCGA</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCGGGGGGGGGAGTTTCTAATTGTTTTGAAACTAGACTCCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="49441" stop="50424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49741" g_stop="50144" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49741" e_stop="50144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGTATGAATATGATTACATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAATCCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAACTAAAGTGATGAGATTAGTGGATCGGGTGTCACGAACCGACACGTAGAATTAGTGGGACGGGTGTCACGAACCGACACATAGAATTAGTGGATCNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="49925" stop="50725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50188" g_stop="50425" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50188" e_stop="50425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGTACCGACACAAGAGGACTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACAAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="49925" stop="50966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50189" g_stop="50666" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50189" e_stop="50666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGTACCGACACAAGAGGACTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACAAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTATTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578291" ref_strand="+" ref_description="SGN-E578291 [LE12BH08]">
      <seq>atgcatttaacaaattacttggcttttaaaaatatttcatatcaaaaccttacaacataattttcttaaaaagtcattattcaatcttcctttaaaactttggattgattatgacattgtttataaatcataagcactatctcctaccctatcgtttttgcaaaagtcaaaggaactacgaggtctagttccaatttttaaacccgacgcgccccaaaaagtaccacttacccatgaatttcaaaaggaattatgtgtatttatgtgtaaatatttatgtgcctacatgtaaactaaatcttttaaatcattttcaaaaacataaactatttttagaccgacctcaaatcaaaattgtttctatggtggaggagcgcgatcaacaatatcgtggcatcttccctataaagaaacaaacattttttttaaaataaaaatttcatattcaaaacttgctcaattttcaaaactttactttctcacatatcaattgcttaatattacaaactttgtttataaaatagtctcacatgcttaaataataataaaactttattgtttatttatggctatcacctagccttgcatgctcaaattaatgaaaatagtattaattgttttatatttgttatcacttagcaagattaaataaattaataaatgaagtgaccttgattgctaattgtaacccccacatagattgcatgagatacggncacgacccacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="-" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="54163" stop="52823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53863" g_stop="53123" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="-" ref_id="SGN-E578291" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53863" e_stop="53123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCATTTAACAAATTACTTGGCTTTTAAATATATTTCATATCAAAACCTTGCAACATAATTTTCTTAAAAAGTCATTATTCAATCTTCCTTTAAAACTTTGGATTGATTATGACATTGTTTATTTTGAAAATAAATTATAAGCACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAACTACGAGGTCTAGTTCTAATTTTTAAACCCGACGCGTCCCCGAAAGTACCACCTACCCATGAATTTCAAAAGGAATTATGTGTGTTTATGTGTAAACATTTATGTGCCTACATGTAAATTAAATCTTTTAAATCATTTTCAAAAACATAAACTATTTTTTAGACCGACCTCAGATCAAAATTGTTTCTATGGTGGAGGAGCGCGATCAACAATATCGTGGCATCATCCCTATAAAGAAACAAACATTTTTTTTAAAAAAAATAATTTCATATTCAAAACTTGCTCAATTTTCAAAACTTTACTTTCGCACATATTAATTGCTTAATATTTGCCAATTTTGTTTATAACATAGTCTCATATG-TTAAATAAAAGTAAAACTTGATTGTTTATTTATTGCTATCACATAGCCTTGCATGCTCAAATTAAATAATAAAATAGTATTAATTG-TTT-T-TTTGTTATCACTTAGCAAGATTAAATAAATTAATAAATGAAGTGACTTTGATTGCTAATTGTAACCCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTT</genome_strand>
        <mrna_strand>ATGCATTTAACAAATTACTTGGCTTTTAAAAATATTTCATATCAAAACCTTACAACATAATTTTCTTAAAAAGTCATTATTCAATCTTCCTTTAAAACTTTGGATTGATTATGACATTGTTTA---T----A--AATCATAAGCACTATCTCCTACCCTATCGTTTTTGCAAAAGTCAAAGGAACTACGAGGTCTAGTTCCAATTTTTAAACCCGACGCGCCCCAAAAAGTACCACTTACCCATGAATTTCAAAAGGAATTATGTGTATTTATGTGTAAATATTTATGTGCCTACATGTAAACTAAATCTTTTAAATCATTTTCAAAAACATAAACTA-TTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCGCGATCAACAATATCGTGGCATCTTCCCTATAAAGAAACAAACATTTTTTTTAAAATAAA-AATTTCATATTCAAAACTTGCTCAATTTTCAAAACTTTACTTTCTCACATATCAATTGCTTAATA-TTACAAACTTTGTTTATAAAATAGTCTCACATGCTTAAATAATAATAAAACTTTATTGTTTATTTATGGCTATCACCTAGCCTTGCATGCTCAAATT-AAT--GAAAATAGTATTAATTGTTTTATATTTGTTATCACTTAGCAAGATTAAATAAATTAATAAATGAAGTGACCTTGATTGCTAATTGTAACCCCCACATAGATTGCATGAGATACGGNCACGACCCACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378250" ref_strand="+" ref_description="SGN-E378250 [TUS-19-P18]">
      <seq>tcattttaattttttagaaaccctgcctataggtttgtctttaaccacccagaataattgtttgtaggtgttataatctaaccaattttcaatttgcttgacgcttttcttaataagtctttaaaaaataataactagattccattaatttttgaatgttaaaatcaaatcataataatttagtaggctgattaggtgttataacttttagcattgtcttgtcatgtagaaaccatgcttaaagattaatttgttcatatcatttagatttacaaaatcatgcatatatgtgttagtcctttcttgaacacctagaaatcatgtctatatgcttgtaaataacttttaacatatccttaaaaactaaaatttgtttgtgcatatttgtgccctccccttaaaattagttaatattatttaattagtaattctatttgtcttcttgaagatttccgcatttatgatgcaatatgttttttttaataatactaaattagaatcatttcatgtatttaacaaattacttggcttttaaatatatttcatatcaaaacctttcaacataattttctttaaaaagtcattattcaatcttcctttaaaactttggattgattttgacattgtttattttgaaaataaattataagcactatctcctaacctatcgttagtgggaaagtcaaaggaactacgaggtctagttccaatttttaaacccgacgcgtacccggaagtatcacctacccatgaatttcacaaagggattatgtgtatttatgtgtaaatatttatgtacctacatgtaaactaaatcttttttaatcattttttttcaaaaaacataaactatttcttagaccgacctcaatcaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="-" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="54677" stop="53198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54377" g_stop="53498" g_length="880"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="879" r_length="879" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="-" ref_id="SGN-E378250" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54377" e_stop="53498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGTAAATTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGAATTATTGCTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGACGCTTTTGTTAATAAGTCTTAAAAAAATAATAACTAGATTCCATTAATTTTTGAATGTTAAAATCAAATCATAATAATTTAGTAGGCTGATTATGTGTTTTAAAATGTTATAACTTTTAGCATTGTCTTGTCATGTAGAAATCATGCCTAAGGATTAATTTGTTCATATCATTTAGATTTACAAAATCATGCATATATGTGTTACTCCTTTTTTGAACACCTAGAAATCATGTCTATAGTCTTGTAAATAACTTTTAACATATCCATAAAAA-TAAAATTTGTTTGTGCATATTTGTGCCCTCCCCCTAAAATTAGTTAATGTTATTTAATTAGTAATCCTATTTGTCTTCTTGAAGATTTCCGCATTCATGATGCAATTTG-TTTTTTTAATGATACTAAATTAGAATCATTTCATGCATTTAACAAATTACTTGGCTTTTAAATATATTTCATATCAAAACCTTGCAACATAATTTTC-TTAAAAAGTCATTATTCAATCTTCCTTTAAAACTTTGGATTGATTATGACATTGTTTATTTTGAAAATAAATTATAAGCACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAACTACGAGGTCTAGTTCTAATTTTTAAACCCGACGCGTCCCCGAAAGTACCACCTACCCATGAATTTCA-AAAGGAATTATGTGTGTTTATGTGTAAACATTTATGTGCCTACATGTAAATTAAATC-TTTTAAATCA----TTTTC-AAAAACATAAACTATTTTTTAGACCGACCTCAGATCAAAATT</genome_strand>
        <mrna_strand>TCATTTTAATTTTTTAGAAACCCTGCCTATAGGTTTGTCTTTAACCACCCAGAATAATTGTTTGTAGGTGTTATAATCTAACCAATTTTCAATTTGCTTGACGCTTTTCTTAATAAGTCTTTAAAAAATAATAACTAGATTCCATTAATTTTTGAATGTTAAAATCAAATCATAATAATTTAGTAGGCTGATTA-G-G--------TGTTATAACTTTTAGCATTGTCTTGTCATGTAGAAACCATGCTTAAAGATTAATTTGTTCATATCATTTAGATTTACAAAATCATGCATATATGTGTTAGTCCTTTCTTGAACACCTAGAAATCATGTCTATATGCTTGTAAATAACTTTTAACATATCCTTAAAAACTAAAATTTGTTTGTGCATATTTGTGCCCTCCCCTTAAAATTAGTTAATATTATTTAATTAGTAATTCTATTTGTCTTCTTGAAGATTTCCGCATTTATGATGCAATATGTTTTTTTTAATAATACTAAATTAGAATCATTTCATGTATTTAACAAATTACTTGGCTTTTAAATATATTTCATATCAAAACCTTTCAACATAATTTTCTTTAAAAAGTCATTATTCAATCTTCCTTTAAAACTTTGGATTGATTTTGACATTGTTTATTTTGAAAATAAATTATAAGCACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAACTACGAGGTCTAGTTCCAATTTTTAAACCCGACGCGTACCCGGAAGTATCACCTACCCATGAATTTCACAAAGGGATTATGTGTATTTATGTGTAAATATTTATGTACCTACATGTAAACTAAATCTTTTTTAATCATTTTTTTTCAAAAAACATAAACTATTTCTTAGACCGACCTCA-ATCAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389952" ref_strand="+" ref_description="SGN-E389952 [TUS-4-O6]">
      <seq>ttcattttaattttttagaaatcatgcctataggtttgtctttaacctcccagaataattgtttgtaagtgttataatctaaccaattttcaatttgcttgacgcttttgttaataagtctttaaaaaataataactagattccattaatttttgaatgttaaaatcaaatcataataatttagtaggctgattaggtgttataacttttagcattgtcttgtcatgtagaaaccatgcttaaagattaatttgttcatatcatttagatttacaaaatcatgcatatatgtgttagtcctttcttgaacacctagaaatcatgtctatatgcttgtaaataacttttaacatatccttaaaaactaaaatttgtttgtgcatatttgtgccctccccttaaaattagttaatattatttaattagtaattctatttgtcttcttgaagatttccgcatttatgatgcaatatgttttttttaataatactaaattagaatcatttcatgtatttaacaaattacttggcttttaaatatatttcatatcaaaacctttcaacataattttctttaaaaagtcattattcaatcttcctttaaaactttggattgattttgacattgtttattttgaaaataaattataagcactatctcctaacctatcgttagtgggaaagtcaaggaactacgaggtctagtccaatttttaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="-" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="54678" stop="53352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54378" g_stop="53652" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="-" ref_id="SGN-E389952" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54378" e_stop="53652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGTAAATTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGAATTATTGCTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGACGCTTTTGTTAATAAGTCTTAAAAAAATAATAACTAGATTCCATTAATTTTTGAATGTTAAAATCAAATCATAATAATTTAGTAGGCTGATTATGTGTTTTAAAATGTTATAACTTTTAGCATTGTCTTGTCATGTAGAAATCATGCCTAAGGATTAATTTGTTCATATCATTTAGATTTACAAAATCATGCATATATGTGTTACTCCTTTTTTGAACACCTAGAAATCATGTCTATAGTCTTGTAAATAACTTTTAACATATCCATAAAAA-TAAAATTTGTTTGTGCATATTTGTGCCCTCCCCCTAAAATTAGTTAATGTTATTTAATTAGTAATCCTATTTGTCTTCTTGAAGATTTCCGCATTCATGATGCAATTTG-TTTTTTTAATGATACTAAATTAGAATCATTTCATGCATTTAACAAATTACTTGGCTTTTAAATATATTTCATATCAAAACCTTGCAACATAATTTTC-TTAAAAAGTCATTATTCAATCTTCCTTTAAAACTTTGGATTGATTATGACATTGTTTATTTTGAAAATAAATTATAAGCACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAACTACGAGGTCTAGTTCTAATTTTTAAAC</genome_strand>
        <mrna_strand>TTCATTTTAATTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCTCCCAGAATAATTGTTTGTAAGTGTTATAATCTAACCAATTTTCAATTTGCTTGACGCTTTTGTTAATAAGTCTTTAAAAAATAATAACTAGATTCCATTAATTTTTGAATGTTAAAATCAAATCATAATAATTTAGTAGGCTGATTA-G-G--------TGTTATAACTTTTAGCATTGTCTTGTCATGTAGAAACCATGCTTAAAGATTAATTTGTTCATATCATTTAGATTTACAAAATCATGCATATATGTGTTAGTCCTTTCTTGAACACCTAGAAATCATGTCTATATGCTTGTAAATAACTTTTAACATATCCTTAAAAACTAAAATTTGTTTGTGCATATTTGTGCCCTCCCCTTAAAATTAGTTAATATTATTTAATTAGTAATTCTATTTGTCTTCTTGAAGATTTCCGCATTTATGATGCAATATGTTTTTTTTAATAATACTAAATTAGAATCATTTCATGTATTTAACAAATTACTTGGCTTTTAAATATATTTCATATCAAAACCTTTCAACATAATTTTCTTTAAAAAGTCATTATTCAATCTTCCTTTAAAACTTTGGATTGATTTTGACATTGTTTATTTTGAAAATAAATTATAAGCACTATCTCCTAACCTATCGTTAGTGGGAAAGTC-AAGGAACTACGAGGTCTAG-TCCAATTTTTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550462" ref_strand="+" ref_description="SGN-E550462 [TUS-5-O6]">
      <seq>ttcattttaattttttagaaatcatgcctataggtttgtctttaaccacccagaataattgtttgtaggtgttataatctaaccaattttcaatttgcttgacgcttttgttaataagtctttaaaaaataataactagattccattaatttttgaatgttaaaatcaaatcataataatttagtaggctgattaggtgttataacttttagcattgtcttgtcatgtagaaaccatgcttaaagattaatttgttcatatcatttagatttacaaaatcatgcatatatgtgttagtcctttcttgaacacctagaaatcatgtctatatgcttgtaaataacttttaacatatccttaaaaactaaaatttgtttgtgcatatttgtgccctccccttaaaattagttaatattatttaattagtaattctatttgtcttcttgaagatttccgcatttatgatgcaatatgttttttttaataatactaaattagaatcatttcatgtatttaacaaattacttggcttttaaatatatttcatatcaaaacctttcaacataattttcttttaaaagtcattattcaatcttcctttaaaactttggattgattttgacattgtttattttgaaaataaattataagcactatctcctaacctatcgttagtgggaaagtcaaaggaactacgaggtctagttccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="-" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="54678" stop="53361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54378" g_stop="53661" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="-" ref_id="SGN-E550462" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54378" e_stop="53661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGTAAATTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGAATTATTGCTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGACGCTTTTGTTAATAAGTCTTAAAAAAATAATAACTAGATTCCATTAATTTTTGAATGTTAAAATCAAATCATAATAATTTAGTAGGCTGATTATGTGTTTTAAAATGTTATAACTTTTAGCATTGTCTTGTCATGTAGAAATCATGCCTAAGGATTAATTTGTTCATATCATTTAGATTTACAAAATCATGCATATATGTGTTACTCCTTTTTTGAACACCTAGAAATCATGTCTATAGTCTTGTAAATAACTTTTAACATATCCATAAAAA-TAAAATTTGTTTGTGCATATTTGTGCCCTCCCCCTAAAATTAGTTAATGTTATTTAATTAGTAATCCTATTTGTCTTCTTGAAGATTTCCGCATTCATGATGCAATTTG-TTTTTTTAATGATACTAAATTAGAATCATTTCATGCATTTAACAAATTACTTGGCTTTTAAATATATTTCATATCAAAACCTTGCAACATAATTTTC-TTAAAAAGTCATTATTCAATCTTCCTTTAAAACTTTGGATTGATTATGACATTGTTTATTTTGAAAATAAATTATAAGCACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAACTACGAGGTCTAGTTCTAA</genome_strand>
        <mrna_strand>TTCATTTTAATTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCCAGAATAATTGTTTGTAGGTGTTATAATCTAACCAATTTTCAATTTGCTTGACGCTTTTGTTAATAAGTCTTTAAAAAATAATAACTAGATTCCATTAATTTTTGAATGTTAAAATCAAATCATAATAATTTAGTAGGCTGATTA-G-G--------TGTTATAACTTTTAGCATTGTCTTGTCATGTAGAAACCATGCTTAAAGATTAATTTGTTCATATCATTTAGATTTACAAAATCATGCATATATGTGTTAGTCCTTTCTTGAACACCTAGAAATCATGTCTATATGCTTGTAAATAACTTTTAACATATCCTTAAAAACTAAAATTTGTTTGTGCATATTTGTGCCCTCCCCTTAAAATTAGTTAATATTATTTAATTAGTAATTCTATTTGTCTTCTTGAAGATTTCCGCATTTATGATGCAATATGTTTTTTTTAATAATACTAAATTAGAATCATTTCATGTATTTAACAAATTACTTGGCTTTTAAATATATTTCATATCAAAACCTTTCAACATAATTTTCTTTTAAAAGTCATTATTCAATCTTCCTTTAAAACTTTGGATTGATTTTGACATTGTTTATTTTGAAAATAAATTATAAGCACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAACTACGAGGTCTAGTTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377315" ref_strand="+" ref_description="SGN-E377315 [TUS-19-P18]">
      <seq>tcattttaattttttagaaatcatgcctataggtttgtctttaaccacccagaataattgtttgtaggtgttataatctaaccaattttcaatttgcttgacgcttttgttaataagtctttaaaaaataataactagattccattaatttttgaatgttaaaatcaaatcataataatttagtaggctgattaggtgttataacttttagcattgtcttgtcatgtagaaaccatgcttaaagattaatttgttcatatcatttagatttacaaaatcatgcatatatgtgttagtcctttcttgaacacctagaaatcatgtctatatgcttgtaaataacttttaacatatccttaaaaactaaaatttgtttgtgcatatttgtgccctccccttaaaattagttaatattatttaattagtaattctatttgtcttcttgaagatttccgcatttatgatgcaatatgttttttttaataatactaaattagaatcatttcatgtatttaacaaattacttggcttttaaatatatttcatatcaaaacctttcaacataattttctttaaaaagtcattattcaatcttcctttaaaactttggattgattttgacattgtttattttgaaaataaattataagcactatctcctaacctatcgttagtgggaaagtcaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="-" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="54677" stop="53381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54377" g_stop="53681" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="-" ref_id="SGN-E377315" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54377" e_stop="53681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGTAAATTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGAATTATTGCTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGACGCTTTTGTTAATAAGTCTTAAAAAAATAATAACTAGATTCCATTAATTTTTGAATGTTAAAATCAAATCATAATAATTTAGTAGGCTGATTATGTGTTTTAAAATGTTATAACTTTTAGCATTGTCTTGTCATGTAGAAATCATGCCTAAGGATTAATTTGTTCATATCATTTAGATTTACAAAATCATGCATATATGTGTTACTCCTTTTTTGAACACCTAGAAATCATGTCTATAGTCTTGTAAATAACTTTTAACATATCCATAAAAA-TAAAATTTGTTTGTGCATATTTGTGCCCTCCCCCTAAAATTAGTTAATGTTATTTAATTAGTAATCCTATTTGTCTTCTTGAAGATTTCCGCATTCATGATGCAATTTG-TTTTTTTAATGATACTAAATTAGAATCATTTCATGCATTTAACAAATTACTTGGCTTTTAAATATATTTCATATCAAAACCTTGCAACATAATTTTC-TTAAAAAGTCATTATTCAATCTTCCTTTAAAACTTTGGATTGATTATGACATTGTTTATTTTGAAAATAAATTATAAGCACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGA</genome_strand>
        <mrna_strand>TCATTTTAATTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCCAGAATAATTGTTTGTAGGTGTTATAATCTAACCAATTTTCAATTTGCTTGACGCTTTTGTTAATAAGTCTTTAAAAAATAATAACTAGATTCCATTAATTTTTGAATGTTAAAATCAAATCATAATAATTTAGTAGGCTGATTA-G-G--------TGTTATAACTTTTAGCATTGTCTTGTCATGTAGAAACCATGCTTAAAGATTAATTTGTTCATATCATTTAGATTTACAAAATCATGCATATATGTGTTAGTCCTTTCTTGAACACCTAGAAATCATGTCTATATGCTTGTAAATAACTTTTAACATATCCTTAAAAACTAAAATTTGTTTGTGCATATTTGTGCCCTCCCCTTAAAATTAGTTAATATTATTTAATTAGTAATTCTATTTGTCTTCTTGAAGATTTCCGCATTTATGATGCAATATGTTTTTTTTAATAATACTAAATTAGAATCATTTCATGTATTTAACAAATTACTTGGCTTTTAAATATATTTCATATCAAAACCTTTCAACATAATTTTCTTTAAAAAGTCATTATTCAATCTTCCTTTAAAACTTTGGATTGATTTTGACATTGTTTATTTTGAAAATAAATTATAAGCACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233173" ref_strand="+" ref_description="SGN-E233173 [cLED-6-D5]">
      <seq>tcattttaattttttagaaatcatgcctataggtttgtctttaaccacccagaataattgtttgtaggtgttataatctaaccaattttcaatttgcttgacgcttttgttaataagtctttaaaaaataataactagattccattaatttttgaatgttaaaatcaaatcataataatttagtaggctgattaggtgttataacttttagcattgtcttgtcatgtagaaaccatgcttaaagattaatttgttcatatcatttagatttacaaaatcatgcatatatgtgttagtcctttcttgaacacctagaaatcatgtctatatgcttgtaaataacttttaacatatccttaaaaactaaaatttgtttgtgcatatttgtgccctccccttaaaattagttaatattatttaattagtaattctatttgtcttcttgaagatttccgcatttatgatgcaatatgttttttttaataatactaaattagaatcatttcatgtatttaacaaattacttggcttttaaatatatntcatatcaaaacctttcaacataattttctttaaaaagtcattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="-" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="54677" stop="53484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54377" g_stop="53784" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="-" ref_id="SGN-E233173" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54377" e_stop="53784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGTAAATTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGAATTATTGCTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGACGCTTTTGTTAATAAGTCTTAAAAAAATAATAACTAGATTCCATTAATTTTTGAATGTTAAAATCAAATCATAATAATTTAGTAGGCTGATTATGTGTTTTAAAATGTTATAACTTTTAGCATTGTCTTGTCATGTAGAAATCATGCCTAAGGATTAATTTGTTCATATCATTTAGATTTACAAAATCATGCATATATGTGTTACTCCTTTTTTGAACACCTAGAAATCATGTCTATAGTCTTGTAAATAACTTTTAACATATCCATAAAAA-TAAAATTTGTTTGTGCATATTTGTGCCCTCCCCCTAAAATTAGTTAATGTTATTTAATTAGTAATCCTATTTGTCTTCTTGAAGATTTCCGCATTCATGATGCAATTTG-TTTTTTTAATGATACTAAATTAGAATCATTTCATGCATTTAACAAATTACTTGGCTTTTAAATATATTTCATATCAAAACCTTGCAACATAATTTTC-TTAAAAAGTCATTAT</genome_strand>
        <mrna_strand>TCATTTTAATTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCCAGAATAATTGTTTGTAGGTGTTATAATCTAACCAATTTTCAATTTGCTTGACGCTTTTGTTAATAAGTCTTTAAAAAATAATAACTAGATTCCATTAATTTTTGAATGTTAAAATCAAATCATAATAATTTAGTAGGCTGATTA-G-G--------TGTTATAACTTTTAGCATTGTCTTGTCATGTAGAAACCATGCTTAAAGATTAATTTGTTCATATCATTTAGATTTACAAAATCATGCATATATGTGTTAGTCCTTTCTTGAACACCTAGAAATCATGTCTATATGCTTGTAAATAACTTTTAACATATCCTTAAAAACTAAAATTTGTTTGTGCATATTTGTGCCCTCCCCTTAAAATTAGTTAATATTATTTAATTAGTAATTCTATTTGTCTTCTTGAAGATTTCCGCATTTATGATGCAATATGTTTTTTTTAATAATACTAAATTAGAATCATTTCATGTATTTAACAAATTACTTGGCTTTTAAATATATNTCATATCAAAACCTTTCAACATAATTTTCTTTAAAAAGTCATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="70202" stop="71354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70502" g_stop="71054" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70502" e_stop="71054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAAATGAGCAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATTAATCAGGTTCTTGCCTATCTTAGCGGGTTATATGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCAGCTACTGTGGCTCCCCGCATGGATGTCTCATTGGAAATAGGCACGTTTCCTCGGTTGACTACAGGG-CTATAATGACAAGTGATCAACATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGTTATTACATAAAATGGGCATAGTGGAACGATTTGGTGTTGAGTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCTGCACAGGCACCACCTATGACTTGGGCGTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="-" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="72488" stop="71558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72188" g_stop="71858" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72188" e_stop="71858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCTAAGATTGCAAAGTTTGGAGAAAACGAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAACGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCGCAAGGTAAATTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTAGAGCCAGGATCAAATAATACAGAAGCCATGCAATCGCAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="71588" stop="72848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71888" g_stop="72548" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71888" e_stop="72548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGCTCTACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTAATTTACCTTGCGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTAACGTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTCGTTTTCTCCAAACTTTGCAATCTTAGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTGTCATATCCTTTCTTCGCGCTAAGAAAATGGTTAGTAAGAGTTGTTTAGCGTTCTTGGCACATCTTAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTAGTCCATGAGTTTCTGGATGTGTTTCCTGCAGACCTTCTTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTACTCGCCCCATTTCCATACCCCCTTATAGGATGGCTCCCGCTGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGCAAAGGCTTCATTAGACCAAGTGCATTTCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352950" ref_strand="+" ref_description="SGN-E352950 [cTOS-14-C13]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="-" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="74295" stop="73109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73995" g_stop="73409" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="-" ref_id="SGN-E352950" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73995" e_stop="73409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGTAAGAATAGTGTGGATCAAATCACCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATTGATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCTGGATCAATTTCTCATCAGTAAACTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAACCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTGGAAACCTGTAAGTAAGCTAGGCTTCCCATGCTCCCTGCTTTTCTACTTAACGCATTTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATGTCATAGTCTTTCAGTAGTTCTATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACACCTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACTACCGCTAACTCTAAATCGTGGGTCGGATAATTACGTTCGTGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357100" ref_strand="+" ref_description="SGN-E357100 [cTOS-22-N3]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="-" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="74295" stop="73109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73995" g_stop="73409" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="-" ref_id="SGN-E357100" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73995" e_stop="73409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGTAAGAATAGTGTGGATCAAATCACCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATTGATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCTGGATCAATTTCTCATCAGTAAACTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAACCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTGGAAACCTGTAAGTAAGCTAGGCTTCCCATGCTCCCTGCTTTTCTACTTAACGCATTTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATGTCATAGTCTTTCAGTAGTTCTATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACACCTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACTACCGCTAACTCTAAATCGTGGGTCGGATAATTACGTTCGTGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352647" ref_strand="+" ref_description="SGN-E352647 [cTOS-11-I7]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaacccatagagataatggctctattactttaatgcaatcactactgccgctaactccaaatcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="-" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="74295" stop="73142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73995" g_stop="73442" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="-" ref_id="SGN-E352647" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73995" e_stop="73442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGTAAGAATAGTGTGGATCAAATCACCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATTGATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCTGGATCAATTTCTCATCAGTAAACTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAACCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTGGAAACCTGTAAGTAAGCTAGGCTTCCCATGCTCCCTGCTTTTCTACTTAACGCATTTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATGTCATAGTCTTTCAGTAGTTCTATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACACCTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACTACCGCTAACTCTAAATCGTGG</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAAACCCATAGAGATAATGGCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353207" ref_strand="+" ref_description="SGN-E353207 [cTOS-14-B13]">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="-" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="74740" stop="73599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74440" g_stop="73899" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="-" ref_id="SGN-E353207" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74440" e_stop="73899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTGCCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAATCGAACAATCTCTGTGATGTAAAGTTTGGCTAACTTCTTTGCATTGTAAGTCACCTTAACCGGAATGAAGTGAGTAGACTTAGTTAACCTATCAACAATTACCCAAATGGAGTCATACTTACGCGTTGTCTTTGGAAGACCAACCACGAAACCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAACATTCTCTGAAGTGTCCCTCCGGGCCTCTGGTGTTCATACTTTATTTGCTGACAATTCAGGCATTGAGCAACAAAGTCAACAATGTCACGCTTCATTCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCTTCTGTAAGAATAGTGTGGATCAAATCACCGACGCGGGGTACACATAC-CCTTCCCTTAATTCTCAAAACACCTTCCTCATTGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTT-ATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242274" ref_strand="+" ref_description="SGN-E242274 [cLEE-3-A13]">
      <seq>tgagtcgacggatcccacgacggaccgtcatgagcacgacggaccgtggagggtgtctcgttccaaaacacttagaattctgaaatttgggtactgagatcgactctctgaacttcgcgacgaaatggcacgacggaccgtcacaggcatgacgggctgtcacaaacccttagtgaaatttaatctctgaactttgtgacggaagcagcaggacggaccgtcgcaggcacgactggtcgtcacagactgcgtaaccctgactgggtcggatttttgttaaatgttttaaggggcgttttggactattcctgcttataattatgaaattagtggtttaatgttaataattcaattacttggggggttgaaggagataaccttgaattaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="75077" stop="76066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75377" g_stop="75766" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E242274" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75377" e_stop="75766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTCGACGGATCCCACGACGGACCGTCATGAGCACGACGGACCGTGGAGGGTGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAGATCGACTCTCTGAACTTCGCGACGAAATGGCAGGACGGACCGTCACAGGCATGACGGGCTGTCACAAACCCTTAGTGAAATTTAGTCTCTGAACTTTGTGACGGAAGCAGCAGGACGGACCGTCGCAGGCACGACTGGTCGTCACAGACTGCGTAACCCTGACTGGGTCGGATTTTTGTTAAATGTTTTAAGGGGCGTTTTGGACTATTCCTGCTTATAATTATGAAATTAGTGGTTTAATGTTAATAATTCAATTACTTGGGGGGTTAAAGGAGATAACCTTGAATTAATT</genome_strand>
        <mrna_strand>TGAGTCGACGGATCCCACGACGGACCGTCATGAGCACGACGGACCGTGGAGGGTGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAGATCGACTCTCTGAACTTCGCGACGAAATGGCACGACGGACCGTCACAGGCATGACGGGCTGTCACAAACCCTTAGTGAAATTTAATCTCTGAACTTTGTGACGGAAGCAGCAGGACGGACCGTCGCAGGCACGACTGGTCGTCACAGACTGCGTAACCCTGACTGGGTCGGATTTTTGTTAAATGTTTTAAGGGGCGTTTTGGACTATTCCTGCTTATAATTATGAAATTAGTGGTTTAATGTTAATAATTCAATTACTTGGGGGGTTGAAGGAGATAACCTTGAATTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313080" ref_strand="+" ref_description="SGN-E313080 [cTOA-14-N13]">
      <seq>tcagctcccattcatactcttctcctaatcgtctccaaagagtaaaattttattcagaaatggcttcatctgctttaattagcgatactcagtcatggaaggatttgcgagctcatgttgaagaaattaacaaaactcatttgcgtgatttgttgaatcacactgatcgatgtcaatcaatgatggtggagtttgatgggattctgatcgattactcgagacaaagagccacccttgatacattgaaaaagctcttcaatttagctgaggcagcacatgttaaggagaagattattcggatgttcaatggagagcatataaacagcacagaaaacagacccgttcttcatgttgcactgcgtgctccaagggatgcagtcataaatagtgacgggaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="76766" stop="78640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77066" g_stop="77175" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77176" i_stop="77252" i_length="77">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77253" g_stop="77329" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="187" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77330" i_stop="77409" i_length="80">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77410" g_stop="77491" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="269" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77492" i_stop="77562" i_length="71">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77563" g_stop="77610" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="317" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77611" i_stop="78255" i_length="645">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78256" g_stop="78340" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="402" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E313080" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77066" e_stop="77175"/>
          <exon e_start="77253" e_stop="77329"/>
          <exon e_start="77410" e_stop="77491"/>
          <exon e_start="77563" e_stop="77610"/>
          <exon e_start="78256" e_stop="78340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTCCCATTCATACTCTTCTCCTAATCGTCTCCAAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGAGTAAGCAATTTTCACAATTTTATGAATATGAATTACTCCTAGTTTGTTATTAATGTGAAATTTCTCTTCAATCGCAGGCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGTGTATGATACTTATTTGCTTTAATTCAATGTTTTTTTTTTGAAATATTTTTGATTTTAAACCTAATCAAATCAATGTATAGGGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAGGTTTGTTTGTTTTTTCTTTATATGAGTCACTTTCAGCTTAATTAGAAAGTTAACCTCGCATTTTGATGCAGGCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCATGTAAGCCTAGTGCAATCTTATTTATATTGAAGAATAGTTTGTGATAGTTTCAGTAGGATAAGATAACCTTCTTCTTCAATAAACTGGATTAAGCTCGAATTTTTGAATGTAGTATGCTTATTTTTTCTTATATGCCAAATGGAATCATCGACATCTTGAATGTTGATTGAGGAACTAGAATAATTTGTCAATATATTAGATATAATTGAGGAACTAGGATATCTTCTAATTCACAAAGGCTTTTTTTTTTTTGATAAAGAACTCACAAAGGCGTTTTTTTTGTCAGTATGTTTGGTCCTACAAAAAACCAAAACCTTTCATCAGAAAACTCATTAAGCACTTTGTATTAGTATTGTAAATTTGCATTTCCTCTATGTTACTAAACTGTATAAAGGATTTACTTGTTGTCTCCTGTCTACAAACAGTATAACAGGAATTTGTTAATTCAATTATTGACCATCAATATCGGTGTGCTCTAATGACTAGGGGACACTGACAAAGGATCCTTAGTTAATCTGATTTTAGCAACTCGAATCTCACATAGCTATGGAGAAATTACTAGTTCTTACAGCATTTAGATTCTTTTTAGTTATCCTGTCAGCTAGTGAGTGGTTTTCCATCATTATTATTTAATCTTTCTTGTAGATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATG</genome_strand>
        <mrna_strand>TCAGCTCCCATTCATACTCTTCTCCTAATCGTCTCCAAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGA.............................................................................GCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGT................................................................................GGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAG.......................................................................GCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248968" ref_strand="+" ref_description="SGN-E248968 [cLEF-49-L24]">
      <seq>ccattcatactcttctcctaatcgtctccaaagagtaaaattttattcagaaatggcttcatctgctttaattagcgatactcagtcatggaaggatttgcgagctcatgttgaagaaattaacaaaactcatttgcgtgatttgttgaatcacactgatcgatgtcaatcaatgatggtggagtttgatgggattctgatcgattactcgagacaaagagccacccttgatacattgaaaaagctcttcaatttagctgaggcagcacatgttaaggagaagattattcggatgttcaatggagagcatataaacagcacagaaaacagacccgttcttcatgttgcactgcgtgctccaagggatgcagtcataaatagtgacgggaagaatgttgttcctgaggtttggcatgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="76773" stop="78665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77073" g_stop="77175" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77176" i_stop="77252" i_length="77">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77253" g_stop="77329" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="180" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77330" i_stop="77409" i_length="80">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77410" g_stop="77491" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="262" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77492" i_stop="77562" i_length="71">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77563" g_stop="77610" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="310" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77611" i_stop="78255" i_length="645">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78256" g_stop="78365" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="420" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E248968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77073" e_stop="77175"/>
          <exon e_start="77253" e_stop="77329"/>
          <exon e_start="77410" e_stop="77491"/>
          <exon e_start="77563" e_stop="77610"/>
          <exon e_start="78256" e_stop="78365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTCATACTCTTCTCCTAATCGTCTCCAAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGAGTAAGCAATTTTCACAATTTTATGAATATGAATTACTCCTAGTTTGTTATTAATGTGAAATTTCTCTTCAATCGCAGGCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGTGTATGATACTTATTTGCTTTAATTCAATGTTTTTTTTTTGAAATATTTTTGATTTTAAACCTAATCAAATCAATGTATAGGGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAGGTTTGTTTGTTTTTTCTTTATATGAGTCACTTTCAGCTTAATTAGAAAGTTAACCTCGCATTTTGATGCAGGCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCATGTAAGCCTAGTGCAATCTTATTTATATTGAAGAATAGTTTGTGATAGTTTCAGTAGGATAAGATAACCTTCTTCTTCAATAAACTGGATTAAGCTCGAATTTTTGAATGTAGTATGCTTATTTTTTCTTATATGCCAAATGGAATCATCGACATCTTGAATGTTGATTGAGGAACTAGAATAATTTGTCAATATATTAGATATAATTGAGGAACTAGGATATCTTCTAATTCACAAAGGCTTTTTTTTTTTTGATAAAGAACTCACAAAGGCGTTTTTTTTGTCAGTATGTTTGGTCCTACAAAAAACCAAAACCTTTCATCAGAAAACTCATTAAGCACTTTGTATTAGTATTGTAAATTTGCATTTCCTCTATGTTACTAAACTGTATAAAGGATTTACTTGTTGTCTCCTGTCTACAAACAGTATAACAGGAATTTGTTAATTCAATTATTGACCATCAATATCGGTGTGCTCTAATGACTAGGGGACACTGACAAAGGATCCTTAGTTAATCTGATTTTAGCAACTCGAATCTCACATAGCTATGGAGAAATTACTAGTTCTTACAGCATTTAGATTCTTTTTAGTTATCCTGTCAGCTAGTGAGTGGTTTTCCATCATTATTATTTAATCTTTCTTGTAGATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACT</genome_strand>
        <mrna_strand>CCATTCATACTCTTCTCCTAATCGTCTCCAAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGA.............................................................................GCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGT................................................................................GGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAG.......................................................................GCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205537" ref_strand="+" ref_description="SGN-E205537 [cLEC-28-J16]">
      <seq>ccattcatactcttctcctaatcggttccaaagagtaaaattttattcacaaatggcttaatctgctttaattagcgatactcagtcatggaaggattagcgagctcatgttgaagaaattaacaaaactcatttgcgtgatttgttgaatcacactgatcgatgtcaatcaatgatggtggagtttgatgggattctgatcgattactcgagacaaatagccacccttgatacattgaaaaagctcttcaatttagctgaagcagcacatgttaaggagaagattattcggatgttcaatggagagcatataaacagcacagaaaacagacccgttcttcatgttgcactgcgtgctccaagggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="76773" stop="78614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77073" g_stop="77175" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77176" i_stop="77252" i_length="77">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77253" g_stop="77329" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="180" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77330" i_stop="77409" i_length="80">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77410" g_stop="77491" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="262" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77492" i_stop="77562" i_length="71">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77563" g_stop="77610" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="310" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77611" i_stop="78255" i_length="645">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78256" g_stop="78314" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="369" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E205537" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77073" e_stop="77175"/>
          <exon e_start="77253" e_stop="77329"/>
          <exon e_start="77410" e_stop="77491"/>
          <exon e_start="77563" e_stop="77610"/>
          <exon e_start="78256" e_stop="78314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTCATACTCTTCTCCTAATCGTCTCCAAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGAGTAAGCAATTTTCACAATTTTATGAATATGAATTACTCCTAGTTTGTTATTAATGTGAAATTTCTCTTCAATCGCAGGCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGTGTATGATACTTATTTGCTTTAATTCAATGTTTTTTTTTTGAAATATTTTTGATTTTAAACCTAATCAAATCAATGTATAGGGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAGGTTTGTTTGTTTTTTCTTTATATGAGTCACTTTCAGCTTAATTAGAAAGTTAACCTCGCATTTTGATGCAGGCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCATGTAAGCCTAGTGCAATCTTATTTATATTGAAGAATAGTTTGTGATAGTTTCAGTAGGATAAGATAACCTTCTTCTTCAATAAACTGGATTAAGCTCGAATTTTTGAATGTAGTATGCTTATTTTTTCTTATATGCCAAATGGAATCATCGACATCTTGAATGTTGATTGAGGAACTAGAATAATTTGTCAATATATTAGATATAATTGAGGAACTAGGATATCTTCTAATTCACAAAGGCTTTTTTTTTTTTGATAAAGAACTCACAAAGGCGTTTTTTTTGTCAGTATGTTTGGTCCTACAAAAAACCAAAACCTTTCATCAGAAAACTCATTAAGCACTTTGTATTAGTATTGTAAATTTGCATTTCCTCTATGTTACTAAACTGTATAAAGGATTTACTTGTTGTCTCCTGTCTACAAACAGTATAACAGGAATTTGTTAATTCAATTATTGACCATCAATATCGGTGTGCTCTAATGACTAGGGGACACTGACAAAGGATCCTTAGTTAATCTGATTTTAGCAACTCGAATCTCACATAGCTATGGAGAAATTACTAGTTCTTACAGCATTTAGATTCTTTTTAGTTATCCTGTCAGCTAGTGAGTGGTTTTCCATCATTATTATTTAATCTTTCTTGTAGATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGC</genome_strand>
        <mrna_strand>CCATTCATACTCTTCTCCTAATCGGTTCCAAAGAGTAAAATTTTATTCACAAATGGCTTAATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTAGCGA.............................................................................GCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGT................................................................................GGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAATAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAA.......................................................................GCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718191" ref_strand="+" ref_description="SGN-E718191 [FC03DH05]">
      <seq>gactcttctcctaatcctctccaaagagtaaaattttattcagaaatggcttcatctgctttaattagcgatactcagtcatggaaggatttgcgagctcatgttgaagaaattaacaaaactcatttgcgtgatttgttgaatcacactgatcgatgtcaatcaatgatggtggagtttgatgggattctgatcgattactcgagacaaagagccacccttgatacattgaaaaagctcttcaatttagctgaggcagcacatgttaaggagaagattattcggatgttcaatggagagcatataaacagcacagaaaacagacccgttcttcatgttgcactgcgtgctccaagggatgcagtcataaatagtgacgggaagaatgttgttcctgaggtttggcatgtacttgataagatccgagacttctctgagagggttcgcagtggttcctgggttggagccacaggaaaagcattgaaagatgttgtagctgttggtataggtggcagtttcttgggccctttgttcgtacacacagcacttcaaacagaagcggaggctagtgagtgtgcaagagggcgccagttgcgatttctcgcgaatgttgatccaattgatgtagcccgaaatataacaggcttgaatcctgaaacaactctagttgtggtggtctcaaagacttttactacagccgagacaatgctaaatgcccgtacaatgagggaatggatctcctctgcattaggacctcaggcagttgcaaagcatatggttgcagttagtaccaatcttaagctcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="76781" stop="79453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77080" g_stop="77175" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77176" i_stop="77252" i_length="77">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77253" g_stop="77329" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="173" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77330" i_stop="77409" i_length="80">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77410" g_stop="77491" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="255" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77492" i_stop="77562" i_length="71">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77563" g_stop="77610" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="303" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77611" i_stop="78255" i_length="645">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78256" g_stop="78411" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="459" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78412" i_stop="78484" i_length="73">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78485" g_stop="78581" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="556" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78582" i_stop="78692" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78693" g_stop="78735" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="599" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="78736" i_stop="78903" i_length="168">
            <donor d_prob="0.660" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="78904" g_stop="78971" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="667" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="78972" i_stop="79068" i_length="97">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="79069" g_stop="79153" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="752" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E718191" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77080" e_stop="77175"/>
          <exon e_start="77253" e_stop="77329"/>
          <exon e_start="77410" e_stop="77491"/>
          <exon e_start="77563" e_stop="77610"/>
          <exon e_start="78256" e_stop="78411"/>
          <exon e_start="78485" e_stop="78581"/>
          <exon e_start="78693" e_stop="78735"/>
          <exon e_start="78904" e_stop="78971"/>
          <exon e_start="79069" e_stop="79153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCTTCTCCTAATCGTCTCCAAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGAGTAAGCAATTTTCACAATTTTATGAATATGAATTACTCCTAGTTTGTTATTAATGTGAAATTTCTCTTCAATCGCAGGCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGTGTATGATACTTATTTGCTTTAATTCAATGTTTTTTTTTTGAAATATTTTTGATTTTAAACCTAATCAAATCAATGTATAGGGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAGGTTTGTTTGTTTTTTCTTTATATGAGTCACTTTCAGCTTAATTAGAAAGTTAACCTCGCATTTTGATGCAGGCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCATGTAAGCCTAGTGCAATCTTATTTATATTGAAGAATAGTTTGTGATAGTTTCAGTAGGATAAGATAACCTTCTTCTTCAATAAACTGGATTAAGCTCGAATTTTTGAATGTAGTATGCTTATTTTTTCTTATATGCCAAATGGAATCATCGACATCTTGAATGTTGATTGAGGAACTAGAATAATTTGTCAATATATTAGATATAATTGAGGAACTAGGATATCTTCTAATTCACAAAGGCTTTTTTTTTTTTGATAAAGAACTCACAAAGGCGTTTTTTTTGTCAGTATGTTTGGTCCTACAAAAAACCAAAACCTTTCATCAGAAAACTCATTAAGCACTTTGTATTAGTATTGTAAATTTGCATTTCCTCTATGTTACTAAACTGTATAAAGGATTTACTTGTTGTCTCCTGTCTACAAACAGTATAACAGGAATTTGTTAATTCAATTATTGACCATCAATATCGGTGTGCTCTAATGACTAGGGGACACTGACAAAGGATCCTTAGTTAATCTGATTTTAGCAACTCGAATCTCACATAGCTATGGAGAAATTACTAGTTCTTACAGCATTTAGATTCTTTTTAGTTATCCTGTCAGCTAGTGAGTGGTTTTCCATCATTATTATTTAATCTTTCTTGTAGATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGGGTAATATCGATCATCAAAGAGATTAATTTAAGCAATACTGCTAAGTTTCTAATCAAGAGGCAATTCTTGATAGGTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATAGGTGGCAGTTTCTTGGGCCCTTTGTTCGTACACACAGCACTTCAAACAGGTATGTCTATGACCCTCTCATCCAAACAAAAGCTATTCATTTGTTTTGCTTTCTTTGTTGTCTAGTTTTTAACTTGCCAAATGTTAAACTTTTAAACCTGGCATATTACAGAAGCGGAGGCTAGTGAGTGTGCAAGAGGGCGCCAGTTGCGATTGTAAGTGTGAAGGAATTATTTAAACCAATTTTTGTTGCCGCCCTGCATCTATTGCCATACATGTTGTGTCCCTCTTTAAATAGTCCAATATTTCTAGTTTAGAGCAAAGAAAACGCTCTCTTTCTGAATTGTGAGAATAGTTATATTTACATTTCTTTGTGGTTGCAGTCTCGCGAATGTTGATCCAATTGATGTAGCCCGAAATATAACAGGCTTGAATCCTGAAACAACTCTAGGTAAATTAATATTTATTGGTGTTCTTTTCCTATAAATAGAGAACTGTAAATATATATCAGACTAATCCTTGATAATATCTTCTTGTTTTGCCTGAAGTTGTGGTGGTCTCAAAGACTTTTACTACAGCCGAGACAATGCTAAATGCCCGTACAATGAGGGAATGGATCTCCTCTGCATTAGG</genome_strand>
        <mrna_strand>GACTCTTCTCCTAATCCTCTCCAAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGA.............................................................................GCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGT................................................................................GGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAG.......................................................................GCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGG.........................................................................GTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATAGGTGGCAGTTTCTTGGGCCCTTTGTTCGTACACACAGCACTTCAAACAG...............................................................................................................AAGCGGAGGCTAGTGAGTGTGCAAGAGGGCGCCAGTTGCGATT........................................................................................................................................................................TCTCGCGAATGTTGATCCAATTGATGTAGCCCGAAATATAACAGGCTTGAATCCTGAAACAACTCTAG.................................................................................................TTGTGGTGGTCTCAAAGACTTTTACTACAGCCGAGACAATGCTAAATGCCCGTACAATGAGGGAATGGATCTCCTCTGCATTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298212" ref_strand="+" ref_description="SGN-E298212 [cLEW-9-C16]">
      <seq>tcttctcctaatcgtctacaaagagtaaaattttattcagaaatggcttcatctgctttaattagcgatactcagtcatggaaggatttgcgagctcatgttgaagaaattaacaaaactcatttgcgtgatttgttgaatcacactgatcgatgtcaatcaatgatggtggagtttgatgggattctgatcgattactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="76783" stop="77739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77083" g_stop="77175" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77176" i_stop="77252" i_length="77">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77253" g_stop="77329" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="170" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77330" i_stop="77409" i_length="80">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77410" g_stop="77440" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="201" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E298212" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77083" e_stop="77175"/>
          <exon e_start="77253" e_stop="77329"/>
          <exon e_start="77410" e_stop="77440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCTAATCGTCTCCAAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGAGTAAGCAATTTTCACAATTTTATGAATATGAATTACTCCTAGTTTGTTATTAATGTGAAATTTCTCTTCAATCGCAGGCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGTGTATGATACTTATTTGCTTTAATTCAATGTTTTTTTTTTGAAATATTTTTGATTTTAAACCTAATCAAATCAATGTATAGGGAGTTTGATGGGATTCTGATCGATTACTCG</genome_strand>
        <mrna_strand>TCTTCTCCTAATCGTCTACAAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGA.............................................................................GCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGT................................................................................GGAGTTTGATGGGATTCTGATCGATTACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200564" ref_strand="+" ref_description="SGN-E200564 [cLEB-8-L2]">
      <seq>gcacgagatcgtctccaaagagtaaaattttattcagaaatggcttcatctgctttaattagcgatactcagtcatggaaggatttgcgagctcatgttgaagaaattaacaaaactcatttgcgtgatttgttgaatcacactgatcgatgtcaatcaatgatggtggagtttgatgggattctgatcgattactcgagacaaagagccacccttgatacattgaaaaagctcttcaatttagctgaggcagcacatgttaaggagaagattattcggatgttcaatggagagcatataaacagcacagaaaacagacccgttcttcatgttgcactgcgtgctccaagggatgcagtcataaatagtgacgggaagaatgttgttcctgaggtttggcatgtacttgataagatccgagacttctctgagagggttcgcagtggttcctgggttggagccacaggaaaagcattgaaagatgttgtagctgttggtatacgtggcagtttcttgggccctttgttcgtacacacagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="76790" stop="78873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77086" g_stop="77175" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77176" i_stop="77252" i_length="77">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77253" g_stop="77329" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="167" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77330" i_stop="77409" i_length="80">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77410" g_stop="77491" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="249" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77492" i_stop="77562" i_length="71">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77563" g_stop="77610" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="297" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77611" i_stop="78255" i_length="645">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78256" g_stop="78411" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="453" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78412" i_stop="78484" i_length="73">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78485" g_stop="78573" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="542" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E200564" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77086" e_stop="77175"/>
          <exon e_start="77253" e_stop="77329"/>
          <exon e_start="77410" e_stop="77491"/>
          <exon e_start="77563" e_stop="77610"/>
          <exon e_start="78256" e_stop="78411"/>
          <exon e_start="78485" e_stop="78573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTAATCGTCTCCAAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGAGTAAGCAATTTTCACAATTTTATGAATATGAATTACTCCTAGTTTGTTATTAATGTGAAATTTCTCTTCAATCGCAGGCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGTGTATGATACTTATTTGCTTTAATTCAATGTTTTTTTTTTGAAATATTTTTGATTTTAAACCTAATCAAATCAATGTATAGGGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAGGTTTGTTTGTTTTTTCTTTATATGAGTCACTTTCAGCTTAATTAGAAAGTTAACCTCGCATTTTGATGCAGGCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCATGTAAGCCTAGTGCAATCTTATTTATATTGAAGAATAGTTTGTGATAGTTTCAGTAGGATAAGATAACCTTCTTCTTCAATAAACTGGATTAAGCTCGAATTTTTGAATGTAGTATGCTTATTTTTTCTTATATGCCAAATGGAATCATCGACATCTTGAATGTTGATTGAGGAACTAGAATAATTTGTCAATATATTAGATATAATTGAGGAACTAGGATATCTTCTAATTCACAAAGGCTTTTTTTTTTTTGATAAAGAACTCACAAAGGCGTTTTTTTTGTCAGTATGTTTGGTCCTACAAAAAACCAAAACCTTTCATCAGAAAACTCATTAAGCACTTTGTATTAGTATTGTAAATTTGCATTTCCTCTATGTTACTAAACTGTATAAAGGATTTACTTGTTGTCTCCTGTCTACAAACAGTATAACAGGAATTTGTTAATTCAATTATTGACCATCAATATCGGTGTGCTCTAATGACTAGGGGACACTGACAAAGGATCCTTAGTTAATCTGATTTTAGCAACTCGAATCTCACATAGCTATGGAGAAATTACTAGTTCTTACAGCATTTAGATTCTTTTTAGTTATCCTGTCAGCTAGTGAGTGGTTTTCCATCATTATTATTTAATCTTTCTTGTAGATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGGGTAATATCGATCATCAAAGAGATTAATTTAAGCAATACTGCTAAGTTTCTAATCAAGAGGCAATTCTTGATAGGTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATAGGTGGCAGTTTCTTGGGCCCTTTGTTCGTACACACAGCACT</genome_strand>
        <mrna_strand>GCACGAGATCGTCTCCAAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGA.............................................................................GCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGT................................................................................GGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAG.......................................................................GCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGG.........................................................................GTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATACGTGGCAGTTTCTTGGGCCCTTTGTTCGTACACACAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343959" ref_strand="+" ref_description="SGN-E343959 [cTOF-12-M19]">
      <seq>tcctaatcgtctccaaagagtaaaattttattcagaaatggcttcattctgctttaattagcgatacctcagtcatggaaggatttgcgagctcatgttgaagaaattaacaaaactcatttgcgtgatttgttgaatcacactgatcgatgtcaatcaatgatggtggagtttgatgggattctgatcgattactcgagacaaagagccacccttgatacattgaaaaagctcttcaatttagctgaggcagcacatgttaaggagaagattattcggatgttcaatggagagcatataaacagcacagaaaacagacccgttcttcatgttgcactgcgtgctccaagggatgcagtcataaatagtgacgggaagaatgttgttcctgaggtttggcatgtacttgataagatccgagacttctctgagagggttcgcagtggttcctgggttggagccacaggaaaagcattgaaagatgttgtagctgttggtataggtgggcagtttcttgggccctttgttcgtacacacagcacttcaaacagaagcggaggcttagtgagtgtgcaagagggcgccagttgcgatttctcgcgaatgttgatccaattgatgtagcccgaaatataacaggcttgaatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="76788" stop="79259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77088" g_stop="77175" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77176" i_stop="77252" i_length="77">
            <donor d_prob="0.981" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77253" g_stop="77329" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="167" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77330" i_stop="77409" i_length="80">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77410" g_stop="77491" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="249" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77492" i_stop="77562" i_length="71">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77563" g_stop="77610" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="297" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77611" i_stop="78255" i_length="645">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78256" g_stop="78411" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="453" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78412" i_stop="78484" i_length="73">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78485" g_stop="78581" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="551" r_length="98" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78582" i_stop="78692" i_length="111">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78693" g_stop="78735" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="595" r_length="44" r_score="0.953"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="78736" i_stop="78903" i_length="168">
            <donor d_prob="0.660" d_score="0.95"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="78904" g_stop="78959" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="651" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E343959" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77088" e_stop="77175"/>
          <exon e_start="77253" e_stop="77329"/>
          <exon e_start="77410" e_stop="77491"/>
          <exon e_start="77563" e_stop="77610"/>
          <exon e_start="78256" e_stop="78411"/>
          <exon e_start="78485" e_stop="78581"/>
          <exon e_start="78693" e_stop="78735"/>
          <exon e_start="78904" e_stop="78959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAATCGTCTCCAAAGAGTAAAATTTTATTCAGAAATGGCTTCA-TCTGCTTTAATTAGCGATA-CTCAGTCATGGAAGGATTTGCGAGTAAGCAATTTTCACAATTTTATGAATATGAATTACTCCTAGTTTGTTATTAATGTGAAATTTCTCTTCAATCGCAGGCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGTGTATGATACTTATTTGCTTTAATTCAATGTTTTTTTTTTGAAATATTTTTGATTTTAAACCTAATCAAATCAATGTATAGGGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAGGTTTGTTTGTTTTTTCTTTATATGAGTCACTTTCAGCTTAATTAGAAAGTTAACCTCGCATTTTGATGCAGGCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCATGTAAGCCTAGTGCAATCTTATTTATATTGAAGAATAGTTTGTGATAGTTTCAGTAGGATAAGATAACCTTCTTCTTCAATAAACTGGATTAAGCTCGAATTTTTGAATGTAGTATGCTTATTTTTTCTTATATGCCAAATGGAATCATCGACATCTTGAATGTTGATTGAGGAACTAGAATAATTTGTCAATATATTAGATATAATTGAGGAACTAGGATATCTTCTAATTCACAAAGGCTTTTTTTTTTTTGATAAAGAACTCACAAAGGCGTTTTTTTTGTCAGTATGTTTGGTCCTACAAAAAACCAAAACCTTTCATCAGAAAACTCATTAAGCACTTTGTATTAGTATTGTAAATTTGCATTTCCTCTATGTTACTAAACTGTATAAAGGATTTACTTGTTGTCTCCTGTCTACAAACAGTATAACAGGAATTTGTTAATTCAATTATTGACCATCAATATCGGTGTGCTCTAATGACTAGGGGACACTGACAAAGGATCCTTAGTTAATCTGATTTTAGCAACTCGAATCTCACATAGCTATGGAGAAATTACTAGTTCTTACAGCATTTAGATTCTTTTTAGTTATCCTGTCAGCTAGTGAGTGGTTTTCCATCATTATTATTTAATCTTTCTTGTAGATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGGGTAATATCGATCATCAAAGAGATTAATTTAAGCAATACTGCTAAGTTTCTAATCAAGAGGCAATTCTTGATAGGTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATAGGT-GGCAGTTTCTTGGGCCCTTTGTTCGTACACACAGCACTTCAAACAGGTATGTCTATGACCCTCTCATCCAAACAAAAGCTATTCATTTGTTTTGCTTTCTTTGTTGTCTAGTTTTTAACTTGCCAAATGTTAAACTTTTAAACCTGGCATATTACAGAAGCGGAGGC-TAGTGAGTGTGCAAGAGGGCGCCAGTTGCGATTGTAAGTGTGAAGGAATTATTTAAACCAATTTTTGTTGCCGCCCTGCATCTATTGCCATACATGTTGTGTCCCTCTTTAAATAGTCCAATATTTCTAGTTTAGAGCAAAGAAAACGCTCTCTTTCTGAATTGTGAGAATAGTTATATTTACATTTCTTTGTGGTTGCAGTCTCGCGAATGTTGATCCAATTGATGTAGCCCGAAATATAACAGGCTTGAATCCTG</genome_strand>
        <mrna_strand>TCCTAATCGTCTCCAAAGAGTAAAATTTTATTCAGAAATGGCTTCATTCTGCTTTAATTAGCGATACCTCAGTCATGGAAGGATTTGCGA.............................................................................GCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGT................................................................................GGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAG.......................................................................GCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGG.........................................................................GTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATAGGTGGGCAGTTTCTTGGGCCCTTTGTTCGTACACACAGCACTTCAAACAG...............................................................................................................AAGCGGAGGCTTAGTGAGTGTGCAAGAGGGCGCCAGTTGCGATT........................................................................................................................................................................TCTCGCGAATGTTGATCCAATTGATGTAGCCCGAAATATAACAGGCTTGAATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283280" ref_strand="+" ref_description="SGN-E283280 [cLER-12-E16]">
      <seq>tcctaatcgtctccaaagagtaaaattttattcagaaatggcttcatctgctttaattagcgatactcagtcatggaaggatttgcgagctcatgttgaagaaattaacaaaactcatttgcgtgatttgttgaatcacactgatcgatgtcaatcaatgatggtggagtttgatgggattctgatcgattactcgagacaaagagccacccttgatacattgaaaaagctcttcaatttagctgaggcagcacatgttaaggagaagattattcggatgttcaatggagagcatataaacagcacagaaaacagacccgttcttcatgttgcactgcgtgctccaagggatgcagtcataaatagtgacgggaagaatgttgttcctgaggtttggcatgtacttgataagatccgagacttctctgagagggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="76788" stop="78696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77088" g_stop="77175" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77176" i_stop="77252" i_length="77">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77253" g_stop="77329" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="165" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77330" i_stop="77409" i_length="80">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77410" g_stop="77491" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="247" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77492" i_stop="77562" i_length="71">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77563" g_stop="77610" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="295" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77611" i_stop="78255" i_length="645">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78256" g_stop="78396" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="436" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E283280" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77088" e_stop="77175"/>
          <exon e_start="77253" e_stop="77329"/>
          <exon e_start="77410" e_stop="77491"/>
          <exon e_start="77563" e_stop="77610"/>
          <exon e_start="78256" e_stop="78396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAATCGTCTCCAAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGAGTAAGCAATTTTCACAATTTTATGAATATGAATTACTCCTAGTTTGTTATTAATGTGAAATTTCTCTTCAATCGCAGGCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGTGTATGATACTTATTTGCTTTAATTCAATGTTTTTTTTTTGAAATATTTTTGATTTTAAACCTAATCAAATCAATGTATAGGGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAGGTTTGTTTGTTTTTTCTTTATATGAGTCACTTTCAGCTTAATTAGAAAGTTAACCTCGCATTTTGATGCAGGCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCATGTAAGCCTAGTGCAATCTTATTTATATTGAAGAATAGTTTGTGATAGTTTCAGTAGGATAAGATAACCTTCTTCTTCAATAAACTGGATTAAGCTCGAATTTTTGAATGTAGTATGCTTATTTTTTCTTATATGCCAAATGGAATCATCGACATCTTGAATGTTGATTGAGGAACTAGAATAATTTGTCAATATATTAGATATAATTGAGGAACTAGGATATCTTCTAATTCACAAAGGCTTTTTTTTTTTTGATAAAGAACTCACAAAGGCGTTTTTTTTGTCAGTATGTTTGGTCCTACAAAAAACCAAAACCTTTCATCAGAAAACTCATTAAGCACTTTGTATTAGTATTGTAAATTTGCATTTCCTCTATGTTACTAAACTGTATAAAGGATTTACTTGTTGTCTCCTGTCTACAAACAGTATAACAGGAATTTGTTAATTCAATTATTGACCATCAATATCGGTGTGCTCTAATGACTAGGGGACACTGACAAAGGATCCTTAGTTAATCTGATTTTAGCAACTCGAATCTCACATAGCTATGGAGAAATTACTAGTTCTTACAGCATTTAGATTCTTTTTAGTTATCCTGTCAGCTAGTGAGTGGTTTTCCATCATTATTATTTAATCTTTCTTGTAGATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTT</genome_strand>
        <mrna_strand>TCCTAATCGTCTCCAAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGA.............................................................................GCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGT................................................................................GGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAG.......................................................................GCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246989" ref_strand="+" ref_description="SGN-E246989 [cLEF-41-A24]">
      <seq>ctaatcgtctccaaagagtaaaattttattcagaaatggcttcatctgctttaattagcgatactcagtcatggaaggatttgcgagctcatgttgaagaaattaacaaaactcatttgcgtgatttgttgaatcacactgatcgatgtcaatcaatgatggtggagtttgatgggattctgatcgattactcgagacaaagagccacccttgatacattgaaaaagctcttcaatttagctgaggcagcacatgttaaggagaagattattcggatgttcaatggagagcatataaacagcacagaaaacagacccgttcttcatgttgcactgcgtgctccaagggatgcagtcataaatagtgacgggaagaatgttgttcctgaggtttggcatgtacttgataagatccgagacttctctgagagggttcgcagtggttcctgggttggagccacaggaaaagcattgaaagatgttgtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="76790" stop="78823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77090" g_stop="77175" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77176" i_stop="77252" i_length="77">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77253" g_stop="77329" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="163" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77330" i_stop="77409" i_length="80">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77410" g_stop="77491" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="245" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77492" i_stop="77562" i_length="71">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77563" g_stop="77610" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="293" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77611" i_stop="78255" i_length="645">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78256" g_stop="78411" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="449" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78412" i_stop="78484" i_length="73">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78485" g_stop="78523" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="488" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E246989" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77090" e_stop="77175"/>
          <exon e_start="77253" e_stop="77329"/>
          <exon e_start="77410" e_stop="77491"/>
          <exon e_start="77563" e_stop="77610"/>
          <exon e_start="78256" e_stop="78411"/>
          <exon e_start="78485" e_stop="78523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATCGTCTCCAAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGAGTAAGCAATTTTCACAATTTTATGAATATGAATTACTCCTAGTTTGTTATTAATGTGAAATTTCTCTTCAATCGCAGGCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGTGTATGATACTTATTTGCTTTAATTCAATGTTTTTTTTTTGAAATATTTTTGATTTTAAACCTAATCAAATCAATGTATAGGGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAGGTTTGTTTGTTTTTTCTTTATATGAGTCACTTTCAGCTTAATTAGAAAGTTAACCTCGCATTTTGATGCAGGCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCATGTAAGCCTAGTGCAATCTTATTTATATTGAAGAATAGTTTGTGATAGTTTCAGTAGGATAAGATAACCTTCTTCTTCAATAAACTGGATTAAGCTCGAATTTTTGAATGTAGTATGCTTATTTTTTCTTATATGCCAAATGGAATCATCGACATCTTGAATGTTGATTGAGGAACTAGAATAATTTGTCAATATATTAGATATAATTGAGGAACTAGGATATCTTCTAATTCACAAAGGCTTTTTTTTTTTTGATAAAGAACTCACAAAGGCGTTTTTTTTGTCAGTATGTTTGGTCCTACAAAAAACCAAAACCTTTCATCAGAAAACTCATTAAGCACTTTGTATTAGTATTGTAAATTTGCATTTCCTCTATGTTACTAAACTGTATAAAGGATTTACTTGTTGTCTCCTGTCTACAAACAGTATAACAGGAATTTGTTAATTCAATTATTGACCATCAATATCGGTGTGCTCTAATGACTAGGGGACACTGACAAAGGATCCTTAGTTAATCTGATTTTAGCAACTCGAATCTCACATAGCTATGGAGAAATTACTAGTTCTTACAGCATTTAGATTCTTTTTAGTTATCCTGTCAGCTAGTGAGTGGTTTTCCATCATTATTATTTAATCTTTCTTGTAGATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGGGTAATATCGATCATCAAAGAGATTAATTTAAGCAATACTGCTAAGTTTCTAATCAAGAGGCAATTCTTGATAGGTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCT</genome_strand>
        <mrna_strand>CTAATCGTCTCCAAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGA.............................................................................GCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGT................................................................................GGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAG.......................................................................GCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGG.........................................................................GTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303001" ref_strand="+" ref_description="SGN-E303001 [cLEW-26-A20]">
      <seq>aaagagtaaaattttattcagaaatggcttcatctgctttaattagcgatactcagtcatggaaggatttgcgagctcatgttgaagaaattaacaaaactcatttgcgtgatttgttgaatcacactgatcgatgtcaatcaatgatggtggagtttgatgggattctgatcgattactcgagacaaagagccacccttgatacattgaaaaagctcttcaatttagctgaggcagcacatgttaaggagaagattattcggatgttcaatggagagcatataaacagcacagaaaacagacccgttcttcatgttgcactgcgtgctccaagggatgcagtcataaatagtgacgggaagaatgttgttcctgaggtttggcatgtacttgataagatccgagacttctctgagagggttcgcagtggttcctgggttggagccacaggaaaagcattgaaagatgttgtagctgttggtataggtggcagtttcttgggccctttgttcgtacacacagcacttcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="76802" stop="78879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77102" g_stop="77175" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77176" i_stop="77252" i_length="77">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77253" g_stop="77329" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="151" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77330" i_stop="77409" i_length="80">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77410" g_stop="77491" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="233" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77492" i_stop="77562" i_length="71">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77563" g_stop="77610" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="281" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77611" i_stop="78255" i_length="645">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78256" g_stop="78411" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="437" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78412" i_stop="78484" i_length="73">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78485" g_stop="78579" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="532" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E303001" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77102" e_stop="77175"/>
          <exon e_start="77253" e_stop="77329"/>
          <exon e_start="77410" e_stop="77491"/>
          <exon e_start="77563" e_stop="77610"/>
          <exon e_start="78256" e_stop="78411"/>
          <exon e_start="78485" e_stop="78579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGAGTAAGCAATTTTCACAATTTTATGAATATGAATTACTCCTAGTTTGTTATTAATGTGAAATTTCTCTTCAATCGCAGGCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGTGTATGATACTTATTTGCTTTAATTCAATGTTTTTTTTTTGAAATATTTTTGATTTTAAACCTAATCAAATCAATGTATAGGGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAGGTTTGTTTGTTTTTTCTTTATATGAGTCACTTTCAGCTTAATTAGAAAGTTAACCTCGCATTTTGATGCAGGCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCATGTAAGCCTAGTGCAATCTTATTTATATTGAAGAATAGTTTGTGATAGTTTCAGTAGGATAAGATAACCTTCTTCTTCAATAAACTGGATTAAGCTCGAATTTTTGAATGTAGTATGCTTATTTTTTCTTATATGCCAAATGGAATCATCGACATCTTGAATGTTGATTGAGGAACTAGAATAATTTGTCAATATATTAGATATAATTGAGGAACTAGGATATCTTCTAATTCACAAAGGCTTTTTTTTTTTTGATAAAGAACTCACAAAGGCGTTTTTTTTGTCAGTATGTTTGGTCCTACAAAAAACCAAAACCTTTCATCAGAAAACTCATTAAGCACTTTGTATTAGTATTGTAAATTTGCATTTCCTCTATGTTACTAAACTGTATAAAGGATTTACTTGTTGTCTCCTGTCTACAAACAGTATAACAGGAATTTGTTAATTCAATTATTGACCATCAATATCGGTGTGCTCTAATGACTAGGGGACACTGACAAAGGATCCTTAGTTAATCTGATTTTAGCAACTCGAATCTCACATAGCTATGGAGAAATTACTAGTTCTTACAGCATTTAGATTCTTTTTAGTTATCCTGTCAGCTAGTGAGTGGTTTTCCATCATTATTATTTAATCTTTCTTGTAGATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGGGTAATATCGATCATCAAAGAGATTAATTTAAGCAATACTGCTAAGTTTCTAATCAAGAGGCAATTCTTGATAGGTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATAGGTGGCAGTTTCTTGGGCCCTTTGTTCGTACACACAGCACTTCAAAC</genome_strand>
        <mrna_strand>AAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGA.............................................................................GCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGT................................................................................GGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAG.......................................................................GCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGG.........................................................................GTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATAGGTGGCAGTTTCTTGGGCCCTTTGTTCGTACACACAGCACTTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359130" ref_strand="+" ref_description="SGN-E359130 [cLHT-11-N2]">
      <seq>aagagtaaaattttattcagaaatggcttcatctgctttaattagcgatactcagtcctggaaggatttgcgagctcatgttgaagaaattaacaaaactcatttgcgtgatttgttgaatcacactgatcgatgtcaatcaatgatggtggagtttgatgggattctgatcgattactcgagacaaagagccacccttgatacattgaaaaagctcttcaatttagctgaggcagcacatgttaaggagaagattattcggatgttcaatggagagcatataaacagcacagaaaacagacccgttcttcatgttgcactgcgtgctccaagggatgcagtcataaatagtgacggaaagaatgttgttcctgaggtttggcatgtacttgataagatccgagacttctctgagagggttcgcagtggttcctgggttggagccacaggaaaagcattgaaagatgttgtagctgttggtataggtggcagtttcttgggccctttgttcgtacacacagcacttcaaacagaagcggaggctagtgagtgtgcaagaggccgccaattgcgatttctcgcgaatgttgatccaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="76803" stop="79227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77103" g_stop="77175" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77176" i_stop="77252" i_length="77">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77253" g_stop="77329" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="150" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77330" i_stop="77409" i_length="80">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77410" g_stop="77491" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="232" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77492" i_stop="77562" i_length="71">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77563" g_stop="77610" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="280" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77611" i_stop="78255" i_length="645">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78256" g_stop="78411" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="436" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78412" i_stop="78484" i_length="73">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78485" g_stop="78581" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="533" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78582" i_stop="78692" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78693" g_stop="78735" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="576" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="78736" i_stop="78903" i_length="168">
            <donor d_prob="0.660" d_score="0.95"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="78904" g_stop="78927" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="600" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E359130" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77103" e_stop="77175"/>
          <exon e_start="77253" e_stop="77329"/>
          <exon e_start="77410" e_stop="77491"/>
          <exon e_start="77563" e_stop="77610"/>
          <exon e_start="78256" e_stop="78411"/>
          <exon e_start="78485" e_stop="78581"/>
          <exon e_start="78693" e_stop="78735"/>
          <exon e_start="78904" e_stop="78927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGAGTAAGCAATTTTCACAATTTTATGAATATGAATTACTCCTAGTTTGTTATTAATGTGAAATTTCTCTTCAATCGCAGGCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGTGTATGATACTTATTTGCTTTAATTCAATGTTTTTTTTTTGAAATATTTTTGATTTTAAACCTAATCAAATCAATGTATAGGGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAGGTTTGTTTGTTTTTTCTTTATATGAGTCACTTTCAGCTTAATTAGAAAGTTAACCTCGCATTTTGATGCAGGCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCATGTAAGCCTAGTGCAATCTTATTTATATTGAAGAATAGTTTGTGATAGTTTCAGTAGGATAAGATAACCTTCTTCTTCAATAAACTGGATTAAGCTCGAATTTTTGAATGTAGTATGCTTATTTTTTCTTATATGCCAAATGGAATCATCGACATCTTGAATGTTGATTGAGGAACTAGAATAATTTGTCAATATATTAGATATAATTGAGGAACTAGGATATCTTCTAATTCACAAAGGCTTTTTTTTTTTTGATAAAGAACTCACAAAGGCGTTTTTTTTGTCAGTATGTTTGGTCCTACAAAAAACCAAAACCTTTCATCAGAAAACTCATTAAGCACTTTGTATTAGTATTGTAAATTTGCATTTCCTCTATGTTACTAAACTGTATAAAGGATTTACTTGTTGTCTCCTGTCTACAAACAGTATAACAGGAATTTGTTAATTCAATTATTGACCATCAATATCGGTGTGCTCTAATGACTAGGGGACACTGACAAAGGATCCTTAGTTAATCTGATTTTAGCAACTCGAATCTCACATAGCTATGGAGAAATTACTAGTTCTTACAGCATTTAGATTCTTTTTAGTTATCCTGTCAGCTAGTGAGTGGTTTTCCATCATTATTATTTAATCTTTCTTGTAGATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGGGTAATATCGATCATCAAAGAGATTAATTTAAGCAATACTGCTAAGTTTCTAATCAAGAGGCAATTCTTGATAGGTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATAGGTGGCAGTTTCTTGGGCCCTTTGTTCGTACACACAGCACTTCAAACAGGTATGTCTATGACCCTCTCATCCAAACAAAAGCTATTCATTTGTTTTGCTTTCTTTGTTGTCTAGTTTTTAACTTGCCAAATGTTAAACTTTTAAACCTGGCATATTACAGAAGCGGAGGCTAGTGAGTGTGCAAGAGGGCGCCAGTTGCGATTGTAAGTGTGAAGGAATTATTTAAACCAATTTTTGTTGCCGCCCTGCATCTATTGCCATACATGTTGTGTCCCTCTTTAAATAGTCCAATATTTCTAGTTTAGAGCAAAGAAAACGCTCTCTTTCTGAATTGTGAGAATAGTTATATTTACATTTCTTTGTGGTTGCAGTCTCGCGAATGTTGATCCAATTGA</genome_strand>
        <mrna_strand>AAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCCTGGAAGGATTTGCGA.............................................................................GCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGT................................................................................GGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAG.......................................................................GCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGAAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGG.........................................................................GTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATAGGTGGCAGTTTCTTGGGCCCTTTGTTCGTACACACAGCACTTCAAACAG...............................................................................................................AAGCGGAGGCTAGTGAGTGTGCAAGAGGCCGCCAATTGCGATT........................................................................................................................................................................TCTCGCGAATGTTGATCCAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358753" ref_strand="+" ref_description="SGN-E358753 [cLHT-24-M1]">
      <seq>aagagtaaaattttattcagaaatggcttcatctgctttaattagcgatactcagtcctggaaggatttgcgagctcatgttgaagaaattaacaaaactcatttgcgtgatttgttgaatcacactgatcgatgtcaatcaatgatggtggagtttgatgggattctgatcgattactcgagacaaagagccacccttgatacattgaaaaagctcttcaatttagctgaggcagcacatgttaaggagaagattattcggatgttcaatggagagcatataaacagcacagaaaacagacccgttcttcatgttgcactgcgtgctccaagggatgcagtcataaatagtgacggaaagaatgttgttcctgaggtttggcatgtacttgataagatccgagacttctctgagagggttcgcagtggttcctgggttggagccacaggaaaagcattgaaagatgttgtagctgttggtataggtggcagtttcttgggccctttgttcgtacacacagcacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="76803" stop="78875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77103" g_stop="77175" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77176" i_stop="77252" i_length="77">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77253" g_stop="77329" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="150" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77330" i_stop="77409" i_length="80">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77410" g_stop="77491" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="232" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77492" i_stop="77562" i_length="71">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77563" g_stop="77610" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="280" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77611" i_stop="78255" i_length="645">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78256" g_stop="78411" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="436" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78412" i_stop="78484" i_length="73">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78485" g_stop="78575" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="527" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E358753" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77103" e_stop="77175"/>
          <exon e_start="77253" e_stop="77329"/>
          <exon e_start="77410" e_stop="77491"/>
          <exon e_start="77563" e_stop="77610"/>
          <exon e_start="78256" e_stop="78411"/>
          <exon e_start="78485" e_stop="78575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGAGTAAGCAATTTTCACAATTTTATGAATATGAATTACTCCTAGTTTGTTATTAATGTGAAATTTCTCTTCAATCGCAGGCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGTGTATGATACTTATTTGCTTTAATTCAATGTTTTTTTTTTGAAATATTTTTGATTTTAAACCTAATCAAATCAATGTATAGGGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAGGTTTGTTTGTTTTTTCTTTATATGAGTCACTTTCAGCTTAATTAGAAAGTTAACCTCGCATTTTGATGCAGGCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCATGTAAGCCTAGTGCAATCTTATTTATATTGAAGAATAGTTTGTGATAGTTTCAGTAGGATAAGATAACCTTCTTCTTCAATAAACTGGATTAAGCTCGAATTTTTGAATGTAGTATGCTTATTTTTTCTTATATGCCAAATGGAATCATCGACATCTTGAATGTTGATTGAGGAACTAGAATAATTTGTCAATATATTAGATATAATTGAGGAACTAGGATATCTTCTAATTCACAAAGGCTTTTTTTTTTTTGATAAAGAACTCACAAAGGCGTTTTTTTTGTCAGTATGTTTGGTCCTACAAAAAACCAAAACCTTTCATCAGAAAACTCATTAAGCACTTTGTATTAGTATTGTAAATTTGCATTTCCTCTATGTTACTAAACTGTATAAAGGATTTACTTGTTGTCTCCTGTCTACAAACAGTATAACAGGAATTTGTTAATTCAATTATTGACCATCAATATCGGTGTGCTCTAATGACTAGGGGACACTGACAAAGGATCCTTAGTTAATCTGATTTTAGCAACTCGAATCTCACATAGCTATGGAGAAATTACTAGTTCTTACAGCATTTAGATTCTTTTTAGTTATCCTGTCAGCTAGTGAGTGGTTTTCCATCATTATTATTTAATCTTTCTTGTAGATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGGGTAATATCGATCATCAAAGAGATTAATTTAAGCAATACTGCTAAGTTTCTAATCAAGAGGCAATTCTTGATAGGTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATAGGTGGCAGTTTCTTGGGCCCTTTGTTCGTACACACAGCACTTC</genome_strand>
        <mrna_strand>AAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCCTGGAAGGATTTGCGA.............................................................................GCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGT................................................................................GGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAG.......................................................................GCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGAAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGG.........................................................................GTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATAGGTGGCAGTTTCTTGGGCCCTTTGTTCGTACACACAGCACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264504" ref_strand="+" ref_description="SGN-E264504 [cLEG-67-K7]">
      <seq>attttattcagaaatggcttcatctgctttaattagcgatactcagtcatggaaggatttgcgagctcatgttgaagaaattaacaaaactcatttgcgtgatttgttgaatcacactgatcgatgtcaatcaatgatggtggagtttgatgggattctgatcgattactcgagacaaagagccacccttgatacattgaaaaagctcttcaatttagctgaggcagcacatgttaaggagaagattattcggatgttcaatggagagcatataaacagcacagaaaacagacccgttcttcatgttgcactgcgtgctccaagggatgcagtcataaatagtgacgggaagaatgttgttcctgaggtttggcatgtacttgataagatccgagacttctctgagagggttcgcagtggttcctgggttggagccacaggaaaagcattgaaagatgttgtagctgttggtataggtggcagtttcttgggccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="76812" stop="78853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77112" g_stop="77175" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77176" i_stop="77252" i_length="77">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77253" g_stop="77329" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="141" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77330" i_stop="77409" i_length="80">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77410" g_stop="77491" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="223" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77492" i_stop="77562" i_length="71">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77563" g_stop="77610" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="271" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77611" i_stop="78255" i_length="645">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78256" g_stop="78411" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="427" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78412" i_stop="78484" i_length="73">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78485" g_stop="78553" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="496" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E264504" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77112" e_stop="77175"/>
          <exon e_start="77253" e_stop="77329"/>
          <exon e_start="77410" e_stop="77491"/>
          <exon e_start="77563" e_stop="77610"/>
          <exon e_start="78256" e_stop="78411"/>
          <exon e_start="78485" e_stop="78553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGAGTAAGCAATTTTCACAATTTTATGAATATGAATTACTCCTAGTTTGTTATTAATGTGAAATTTCTCTTCAATCGCAGGCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGTGTATGATACTTATTTGCTTTAATTCAATGTTTTTTTTTTGAAATATTTTTGATTTTAAACCTAATCAAATCAATGTATAGGGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAGGTTTGTTTGTTTTTTCTTTATATGAGTCACTTTCAGCTTAATTAGAAAGTTAACCTCGCATTTTGATGCAGGCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCATGTAAGCCTAGTGCAATCTTATTTATATTGAAGAATAGTTTGTGATAGTTTCAGTAGGATAAGATAACCTTCTTCTTCAATAAACTGGATTAAGCTCGAATTTTTGAATGTAGTATGCTTATTTTTTCTTATATGCCAAATGGAATCATCGACATCTTGAATGTTGATTGAGGAACTAGAATAATTTGTCAATATATTAGATATAATTGAGGAACTAGGATATCTTCTAATTCACAAAGGCTTTTTTTTTTTTGATAAAGAACTCACAAAGGCGTTTTTTTTGTCAGTATGTTTGGTCCTACAAAAAACCAAAACCTTTCATCAGAAAACTCATTAAGCACTTTGTATTAGTATTGTAAATTTGCATTTCCTCTATGTTACTAAACTGTATAAAGGATTTACTTGTTGTCTCCTGTCTACAAACAGTATAACAGGAATTTGTTAATTCAATTATTGACCATCAATATCGGTGTGCTCTAATGACTAGGGGACACTGACAAAGGATCCTTAGTTAATCTGATTTTAGCAACTCGAATCTCACATAGCTATGGAGAAATTACTAGTTCTTACAGCATTTAGATTCTTTTTAGTTATCCTGTCAGCTAGTGAGTGGTTTTCCATCATTATTATTTAATCTTTCTTGTAGATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGGGTAATATCGATCATCAAAGAGATTAATTTAAGCAATACTGCTAAGTTTCTAATCAAGAGGCAATTCTTGATAGGTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATAGGTGGCAGTTTCTTGGGCCCT</genome_strand>
        <mrna_strand>ATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGA.............................................................................GCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGT................................................................................GGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAG.......................................................................GCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGG.........................................................................GTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATAGGTGGCAGTTTCTTGGGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270620" ref_strand="+" ref_description="SGN-E270620 [cLEM-6-C21]">
      <seq>ttgaatcacactgatcgatgtcaatcaatgatggtggagtttgatgggattctgatcgattactcgagacaaagagccacccttgatacattgaaaaagctcttcaatttagctgaggcagcacatgttaaggagaagattattcggatgttcaatggagagcatataaacagcacagaaaacagacccgttcttcatgttgcactgcgtgctccaagggatgcagtcataaatagtgacgggaagaatgttgttcctgaggtttggcatgtacttgataagatccgagacttctctgagagggttcgcagtggttcctgggttggagccacaggaaaagcattgaaagatgttgtagctgttggtataggtggcagtttcttgggccctttgttcgtacacacagcacttcaaacagaagcggaggctagtgagtgtgcaagagggcgccagttgcgatttctcgcgaatgttgatccaattgatgtagcccgaaatataacaggcttgaatcctgaaacaactctgttgtggtggtctcaaagacttttactacagccgagacaatgctaaatgcccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="76995" stop="79421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77295" g_stop="77329" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77330" i_stop="77409" i_length="80">
            <donor d_prob="0.731" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77410" g_stop="77491" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="117" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77492" i_stop="77562" i_length="71">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77563" g_stop="77610" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="165" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77611" i_stop="78255" i_length="645">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78256" g_stop="78411" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="321" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78412" i_stop="78484" i_length="73">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78485" g_stop="78581" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="418" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78582" i_stop="78692" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78693" g_stop="78735" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="461" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78736" i_stop="78903" i_length="168">
            <donor d_prob="0.660" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78904" g_stop="78971" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="528" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="78972" i_stop="79068" i_length="97">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="79069" g_stop="79121" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="581" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E270620" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77295" e_stop="77329"/>
          <exon e_start="77410" e_stop="77491"/>
          <exon e_start="77563" e_stop="77610"/>
          <exon e_start="78256" e_stop="78411"/>
          <exon e_start="78485" e_stop="78581"/>
          <exon e_start="78693" e_stop="78735"/>
          <exon e_start="78904" e_stop="78971"/>
          <exon e_start="79069" e_stop="79121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATCACACTGATCGATGTCAATCAATGATGGTGTATGATACTTATTTGCTTTAATTCAATGTTTTTTTTTTGAAATATTTTTGATTTTAAACCTAATCAAATCAATGTATAGGGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAGGTTTGTTTGTTTTTTCTTTATATGAGTCACTTTCAGCTTAATTAGAAAGTTAACCTCGCATTTTGATGCAGGCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCATGTAAGCCTAGTGCAATCTTATTTATATTGAAGAATAGTTTGTGATAGTTTCAGTAGGATAAGATAACCTTCTTCTTCAATAAACTGGATTAAGCTCGAATTTTTGAATGTAGTATGCTTATTTTTTCTTATATGCCAAATGGAATCATCGACATCTTGAATGTTGATTGAGGAACTAGAATAATTTGTCAATATATTAGATATAATTGAGGAACTAGGATATCTTCTAATTCACAAAGGCTTTTTTTTTTTTGATAAAGAACTCACAAAGGCGTTTTTTTTGTCAGTATGTTTGGTCCTACAAAAAACCAAAACCTTTCATCAGAAAACTCATTAAGCACTTTGTATTAGTATTGTAAATTTGCATTTCCTCTATGTTACTAAACTGTATAAAGGATTTACTTGTTGTCTCCTGTCTACAAACAGTATAACAGGAATTTGTTAATTCAATTATTGACCATCAATATCGGTGTGCTCTAATGACTAGGGGACACTGACAAAGGATCCTTAGTTAATCTGATTTTAGCAACTCGAATCTCACATAGCTATGGAGAAATTACTAGTTCTTACAGCATTTAGATTCTTTTTAGTTATCCTGTCAGCTAGTGAGTGGTTTTCCATCATTATTATTTAATCTTTCTTGTAGATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGGGTAATATCGATCATCAAAGAGATTAATTTAAGCAATACTGCTAAGTTTCTAATCAAGAGGCAATTCTTGATAGGTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATAGGTGGCAGTTTCTTGGGCCCTTTGTTCGTACACACAGCACTTCAAACAGGTATGTCTATGACCCTCTCATCCAAACAAAAGCTATTCATTTGTTTTGCTTTCTTTGTTGTCTAGTTTTTAACTTGCCAAATGTTAAACTTTTAAACCTGGCATATTACAGAAGCGGAGGCTAGTGAGTGTGCAAGAGGGCGCCAGTTGCGATTGTAAGTGTGAAGGAATTATTTAAACCAATTTTTGTTGCCGCCCTGCATCTATTGCCATACATGTTGTGTCCCTCTTTAAATAGTCCAATATTTCTAGTTTAGAGCAAAGAAAACGCTCTCTTTCTGAATTGTGAGAATAGTTATATTTACATTTCTTTGTGGTTGCAGTCTCGCGAATGTTGATCCAATTGATGTAGCCCGAAATATAACAGGCTTGAATCCTGAAACAACTCTAGGTAAATTAATATTTATTGGTGTTCTTTTCCTATAAATAGAGAACTGTAAATATATATCAGACTAATCCTTGATAATATCTTCTTGTTTTGCCTGAAGTTGTGGTGGTCTCAAAGACTTTTACTACAGCCGAGACAATGCTAAATGCCCGT</genome_strand>
        <mrna_strand>TTGAATCACACTGATCGATGTCAATCAATGATGGT................................................................................GGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAG.......................................................................GCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGG.........................................................................GTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATAGGTGGCAGTTTCTTGGGCCCTTTGTTCGTACACACAGCACTTCAAACAG...............................................................................................................AAGCGGAGGCTAGTGAGTGTGCAAGAGGGCGCCAGTTGCGATT........................................................................................................................................................................TCTCGCGAATGTTGATCCAATTGATGTAGCCCGAAATATAACAGGCTTGAATCCTGAAACAACTCT-G.................................................................................................TTGTGGTGGTCTCAAAGACTTTTACTACAGCCGAGACAATGCTAAATGCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204883" ref_strand="+" ref_description="SGN-E204883 [cLEC-14-D24]">
      <seq>ttattcggatgttcaatggagagcatataaacagcacagaaaacagacccgttcttcatgttgcactgcgtgctccaagggatgcagtcataaatagtgacgggaagaatgttgttcctgaggtttggcatgtacttgataagatccgagacttctctgagagggttcgcagtggttcctgggttggagccacaggaaaagcattgaaagatgttgtagctgttggtaggtggcagtttcttgggccctttgttcgtacacacagcacttcaaacagaagcggaggctagtgagtgtgcaagagggcgccagttgcgatttctcgcgaatgttgatccaattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0050N03-IEHXF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0050N03.1" temp_strand="+" temp_description="C12SLe0050N03.1  AC235493.2 htgs_phase:2 submitted_to_sgn_as:gi|238550292|gb|AC235493.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-50N3, WORKING DRAFT SEQUENCE, 13 ordered pieces">
        <position start="77285" stop="79229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77585" g_stop="77610" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77611" i_stop="78255" i_length="645">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78256" g_stop="78411" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="182" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78412" i_stop="78484" i_length="73">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78485" g_stop="78581" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="277" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78582" i_stop="78692" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78693" g_stop="78735" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="320" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78736" i_stop="78903" i_length="168">
            <donor d_prob="0.660" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78904" g_stop="78929" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="346" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0050N03.1" gen_strand="+" ref_id="SGN-E204883" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0050N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77585" e_stop="77610"/>
          <exon e_start="78256" e_stop="78411"/>
          <exon e_start="78485" e_stop="78581"/>
          <exon e_start="78693" e_stop="78735"/>
          <exon e_start="78904" e_stop="78929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCGGATGTTCAATGGAGAGCATGTAAGCCTAGTGCAATCTTATTTATATTGAAGAATAGTTTGTGATAGTTTCAGTAGGATAAGATAACCTTCTTCTTCAATAAACTGGATTAAGCTCGAATTTTTGAATGTAGTATGCTTATTTTTTCTTATATGCCAAATGGAATCATCGACATCTTGAATGTTGATTGAGGAACTAGAATAATTTGTCAATATATTAGATATAATTGAGGAACTAGGATATCTTCTAATTCACAAAGGCTTTTTTTTTTTTGATAAAGAACTCACAAAGGCGTTTTTTTTGTCAGTATGTTTGGTCCTACAAAAAACCAAAACCTTTCATCAGAAAACTCATTAAGCACTTTGTATTAGTATTGTAAATTTGCATTTCCTCTATGTTACTAAACTGTATAAAGGATTTACTTGTTGTCTCCTGTCTACAAACAGTATAACAGGAATTTGTTAATTCAATTATTGACCATCAATATCGGTGTGCTCTAATGACTAGGGGACACTGACAAAGGATCCTTAGTTAATCTGATTTTAGCAACTCGAATCTCACATAGCTATGGAGAAATTACTAGTTCTTACAGCATTTAGATTCTTTTTAGTTATCCTGTCAGCTAGTGAGTGGTTTTCCATCATTATTATTTAATCTTTCTTGTAGATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGGGTAATATCGATCATCAAAGAGATTAATTTAAGCAATACTGCTAAGTTTCTAATCAAGAGGCAATTCTTGATAGGTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATAGGTGGCAGTTTCTTGGGCCCTTTGTTCGTACACACAGCACTTCAAACAGGTATGTCTATGACCCTCTCATCCAAACAAAAGCTATTCATTTGTTTTGCTTTCTTTGTTGTCTAGTTTTTAACTTGCCAAATGTTAAACTTTTAAACCTGGCATATTACAGAAGCGGAGGCTAGTGAGTGTGCAAGAGGGCGCCAGTTGCGATTGTAAGTGTGAAGGAATTATTTAAACCAATTTTTGTTGCCGCCCTGCATCTATTGCCATACATGTTGTGTCCCTCTTTAAATAGTCCAATATTTCTAGTTTAGAGCAAAGAAAACGCTCTCTTTCTGAATTGTGAGAATAGTTATATTTACATTTCTTTGTGGTTGCAGTCTCGCGAATGTTGATCCAATTGATG</genome_strand>
        <mrna_strand>TTATTCGGATGTTCAATGGAGAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGG.........................................................................GTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGG--TAGGTGGCAGTTTCTTGGGCCCTTTGTTCGTACACACAGCACTTCAAACAG...............................................................................................................AAGCGGAGGCTAGTGAGTGTGCAAGAGGGCGCCAGTTGCGATT........................................................................................................................................................................TCTCGCGAATGTTGATCCAATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>52</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="18589" PGL_stop="4281"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18589" e_stop="18250"/>
            <exon e_start="4459" e_stop="4281"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.926"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="18589" e_stop="18250" e_length="340"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18249" i_stop="4460" i_length="13790"/>
          </intron>
          <exon e_serial="2" e_score="0.911">
            <gDNA_exon_boundary e_start="4459" e_stop="4281" e_length="179"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18589" stop="18250"/>
              <exon start="4459" stop="4281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGATGAGAATTTGTCTTATGAGGAGGAACCTGTTGCCATTCTAGATAGAGAAATTCGCAAGTTGAGATTAAGGGAGATTGCATCCATCAAAGTTCAATGGAAGAATCGACCCGTTGAAGAAGCCACTTGGGAGAAGGAGGCAGATATGTGAGAAAGATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTGTGATCGTTCGGGGACGTACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCATCAGATTTTATTTCTGGAAAAATAGGCTGAGGCGACGGACCCCACGACGGACCGTC : GAGGGGGTCTCGTTCCAAAACACTTAGAATTCTGAATTTTGGATACTGAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGATGGGCCGTCACAGATCCTTTAGTGAAATTTAGTCTCTGAAATTTGTGACGGAAGCAGAAGGACGGACCGTCGCAG</gDNA_template>
            <first_frame> L  D  E  N  L  S  Y  E  E  E  P  V  A  I  L  D  R  E  I  R  K  L  R  L  R  E  I  A  S  I  K  V  Q  W  K  N  R  P  V  E  E  A  T  W  E  K  E  A  D  M  *  E  R  Y  P  H  L  F  T  D  S  G  T  P  F  R  P  C  F  P  S  C  D  R  S  G  T  Y  D  G  *  I  G  I  Y  C  N  D  L  F  S  R  F  E  H  Q  I  L  F  L  E  K  *  A  E  A  T  D  P  T  T  D  R   : R  G  G  L  V  P  K  H  L  E  F  *  I  L  D  T  E  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  A  *  W  A  V  T  D  P  L  V  K  F  S  L  *  N  L  *  R  K  Q  K  D  G  P  S  Q </first_frame>
            <second_frame>  L  M  R  I  C  L  M  R  R  N  L  L  P  F  *  I  E  K  F  A  S  *  D  *  G  R  L  H  P  S  K  F  N  G  R  I  D  P  L  K  K  P  L  G  R  R  R  Q  I  C  E  K  D  T  H  I  C  L  Q  I  Q  V  L  L  F  A  L  V  F  L  L  V  I  V  R  G  R  T  M  G  K  L  V  S  I  V  T  T  C  L  V  V  L  S  I  R  F  Y  F  W  K  N  R  L  R  R  R  T  P  R  R  T  V  :  E  G  V  S  F  Q  N  T  *  N  S  E  F  W  I  L  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  R  R  D  G  P  S  Q  I  L  *  *  N  L  V  S  E  I  C  D  G  S  R  R  T  D  R  R   </second_frame>
            <third_frame>   *  *  E  F  V  L  *  G  G  T  C  C  H  S  R  *  R  N  S  Q  V  E  I  K  G  D  C  I  H  Q  S  S  M  E  E  S  T  R  *  R  S  H  L  G  E  G  G  R  Y  V  R  K  I  P  T  S  V  Y  R  F  R  Y  S  F  S  P  L  F  S  F  L  *  S  F  G  D  V  R  W  V  N  W  Y  L  L  *  R  P  V  *  S  F  *  A  S  D  F  I  S  G  K  I  G  *  G  D  G  P  H  D  G  P  S :   R  G  S  R  S  K  T  L  R  I  L  N  F  G  Y  *  N  R  L  S  E  L  R  D  G  M  A  G  R  T  V  T  G  V  M  G  R  H  R  S  F  S  E  I  *  S  L  K  F  V  T  E  A  E  G  R  T  V  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18516" stop="18250"/>
                    <exon start="4459" stop="4433"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRLHPSKFNGRIDPLKKPLGRRRQICEKDTHICLQIQVLLFALVFLLVIVRGRTMGKLVSIVTTCLVVLSIRFYFWKNRLRRRTPRRTVEGVSFQNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="18993" PGL_stop="19169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18993" e_stop="19169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="18993" e_stop="19169" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18993" stop="19169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCGCGAAACATATCCTCCAACACTTGAATAGTTCTCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  N  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  T  L  S  H  M  R  E  T  Y  P  P  T  L  E  *  F  S  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  A  K  H  I  L  Q  H  L  N  S  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0050N03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="29986" PGL_stop="31335"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29986" e_stop="31335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="29986" e_stop="31335" e_length="1350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29986" stop="30697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29986" stop="30581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29986" stop="30511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30057" stop="30735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30057" stop="30415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30506" stop="31163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30575" stop="31335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30575" stop="31234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30977" stop="31307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACATAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGTTTTTTCTCCCTCAACATTTCTAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTCGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAAGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTTCGCGGGGGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATAGAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACAGACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCGAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGTATCGGCTTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCATAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAAAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGAACCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGAT</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  S  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  N  H  H  P  I  L  R  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  F  F  L  P  Q  H  F  *  Y  P  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  E  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  I  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  Q  N  W  S  T  P  R  R  C  T  W  S  K  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  F  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  E  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  Q  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  I  G  L  E  V  *  S  P  S  Q  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  K  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  F  L  P  I  K  F  T  K  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  K  T  R  I  G  M  S  S  N  S  Q  G  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  E  P  G  S  N  N  T  E  A  M  Q  S  Q  T  E  R  L  P  V  M  T  A  S  D </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  I  V  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  L  L  K  C  S  S  C  S  F  S  L  F  E  Y  T  N  I  S  S  M  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  R  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  S  R  G  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  *  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  R  P  P  K  P  T  Q  L  K  V  L  G  *  C  H  P  *  D  V  R  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  V  S  A  W  K  C  S  H  P  P  K  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  N  S  E  K  A  K  S  Y  P  K  L  H  Q  S  Q  P  F  L  R  *  P  N  L  H  K  C  F  S  P  *  N  S  P  N  K  T  Y  I  L  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  V  C  Q  V  I  H  K  V  N  L  D  H  *  Q  M  K  K  I  H  K  K  M  W  N  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  L   </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  *  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  Q  P  S  P  H  P  *  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  V  F  S  P  S  T  F  L  I  P  F  S  N  A  L  H  V  P  S  R  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  Y  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  T  K  L  E  H  P  K  E  M  H  L  V  *  E  A  F  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  G  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  R  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  *  R  Y  L  G  S  V  I  L  E  M  C  E  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  Y  R  L  G  S  V  V  T  L  P  N  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  I  R  R  K  P  S  H  T  Q  N  Y  I  K  V  N  H  F  *  D  N  Q  I  Y  I  S  V  S  P  H  K  I  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  K  N  T  N  R  Y  V  K  *  F  T  R  *  I  *  T  I  S  K  *  R  R  Y  I  R  K  C  G  T  R  I  K  Q  Y  R  S  H  A  I  T  N  R  K  I  T  C  D  D  S  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30712" stop="30957"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIEKSISLSGGIPGRSAGNTSRNSQTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRIGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30250" stop="30489"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINEYDHKEIQIWLKNPVHQAHESSRGIRKTKRHHYKFVMPIPGSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30182" stop="30379"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTLLKCSSCSFSLFEYTNISSMNTITKRSRYGLKIPFIKLMKAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="31999" PGL_stop="30558"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31999" e_stop="31826"/>
            <exon e_start="31084" e_stop="30558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.902"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="31999" e_stop="31826" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31825" i_stop="31085" i_length="741"/>
          </intron>
          <exon e_serial="2" e_score="0.903">
            <gDNA_exon_boundary e_start="31084" e_stop="30558" e_length="527"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31999" stop="31826"/>
              <exon start="31084" stop="30558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGGATTTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGTATACGGCAAAATCCTTCCAAG : AAATGGTTGACTTTGATGTAATTTTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAAGCCGATACGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTCGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTCTGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTCTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCCCCCGCGAAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCTTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  P  V  C  H  P  T  V  F  Q  S  T  R  A  D  F  A  V  L  *  R  G  *  D  Q  S  C  G  F  Q  P  Y  R  *  R  I  R  Q  N  P  S  K  :  K  W  L  T  L  M  *  F  W  V  *  L  G  F  L  R  I  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  F  G  R  V  T  T  L  P  S  R  Y  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  S  H  I  S  R  M  T  L  P  K  Y  L  Q  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  L  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  P  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  A  K  A  S  *  T  K  C  I  S  L  G  C  S  S  F  V  C  E  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  S  P  F  C  E  G  V  E  I  R  V  A  D  F  S  L  T  G  S  V  Y  G  K  I  L  P  R :   N  G  *  L  *  C  N  F  G  Y  D  L  A  F  S  E  F  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  L  G  G  *  L  H  F  Q  A  D  T  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  R  T  S  Q  G  *  H  Y  P  S  T  F  N  *  V  G  F  G  G  L  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  P  R  E  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  L  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  C  V  S  V  H  K  S  G  F  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  Y  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  K  P  I  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  F  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  C  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  S  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  K  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  L  D  Q  V  H  L  L  G  V  L  Q  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31997" stop="31826"/>
                    <exon start="31084" stop="30597"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVGCRLLHMRLSFVHYPGMPPNCVSVHKSGFRRFVKGLRSELRISALQVAYTAKSFQEMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSKPIRIISFLRAKKMVSKGCLAFFAHLKDDTTQVPSIESVSVVCEFLDVFPADLPGMPPDRDIDFSIDLEPGTRPISIPPYRMAPAKLRELKAQLQELLSKGFLDQVHLLGVLQFCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="31902" PGL_stop="32693"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31902" e_stop="32693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="31902" e_stop="32693" e_length="792"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31902" stop="32622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31906" stop="32569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32261" stop="32693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGAAATCCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCATAGTCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTAGTTGAAACTCAACATGTGACCGCCACCACATTTTGGCGTTTCCTTGGAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACTAGAAAATCATAGGTATCCTCAGATTCAGCACCCTTTAAGACTGGAGGTTTCAATTTCAAGAACTTAATGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTTAGACGTGGAAACGTGCCTATGTCCAATGAGACATCCATACGATGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCGGGGGTAGGCTGGGGTGGCAATCCCTCATTTTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTGCTCTTC</gDNA_template>
            <first_frame> A  K  S  A  L  V  D  *  N  T  V  G  W  H  T  G  I  M  H  E  T  *  P  H  M  Q  *  P  T  S  Y  L  A  L  G  S  R  T  H  L  F  S  Y  P  S  *  S  E  G  Y  T  S  P  *  T  S  *  R  M  M  P  K  S  *  V  V  P  L  L  V  E  T  Q  H  V  T  A  T  T  F  W  R  F  L  G  T  D  K  S  Q  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  L  E  N  H  R  Y  P  Q  I  Q  H  P  L  R  L  E  V  S  I  S  R  T  *  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  L  D  V  E  T  C  L  C  P  M  R  H  P  Y  D  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  P  D  L  D  Q  T  T  H  *  D  K  R  A  P  D  L  S  S  R  G  *  A  G  V  A  I  P  H  F  A  L  V  H  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </first_frame>
            <second_frame>  R  N  P  L  L  W  T  E  T  Q  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  S  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  P  H  S  P  R  D  I  L  L  H  K  Q  A  R  E  *  C  P  S  H  R  W  C  L  C  *  L  K  L  N  M  *  P  P  P  H  F  G  V  S  L  E  L  I  S  H  K  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  *  K  I  I  G  I  L  R  F  S  T  L  *  D  W  R  F  Q  F  Q  E  L  N  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  *  T  W  K  R  A  Y  V  Q  *  D  I  H  T  M  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  K  I  S  E  H  L  I  Y  H  L  G  G  R  L  G  W  Q  S  L  I  L  H  L  F  I  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  S  C  R  C  S   </second_frame>
            <third_frame>   E  I  R  S  C  G  L  K  H  S  W  V  A  Y  R  D  N  A  R  N  L  A  S  Y  A  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  I  V  R  G  I  Y  F  S  I  N  K  L  E  N  D  A  Q  V  I  G  G  A  S  V  S  *  N  S  T  C  D  R  H  H  I  L  A  F  P  W  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  V  S  S  D  S  A  P  F  K  T  G  G  F  N  F  K  N  L  M  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  T  S  I  R  *  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  S  T  *  F  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32416" stop="32691"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRCLTLIRQPTKISEHLIYHLGGRLGWQSLILHLFIFPILPFSYYFLSRWRSHCPSIRWARCSSSSPRGRPPTTSTTASCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31904" stop="32113"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIRSCGLKHSWVAYRDNARNLASYAVTDILPCSRLKNSSLFLSLIVRGIYFSINKLENDAQVIGGASVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32094" stop="32297"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVPLLVETQHVTATTFWRFLGTDKSQTQHQTVLLYPSCVVAHDSQLENHRYPQIQHPLRLEVSISRT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32495" stop="32692"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIISGVGWGGNPSFCTCSFSPSSPSLITSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRPLAAAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="49682" PGL_stop="49019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49682" e_stop="49019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="49682" e_stop="49019" e_length="664"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49682" stop="49019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49682" stop="49229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49681" stop="49124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49681" stop="49137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49681" stop="49210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGCCTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCTTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATCTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAATGACTAAACAGGTCGTTACAATTTTACCCTTGAGAGTTATTAATCTTAAAAATATGAATTCGACCATTACATAAAAGTTAAATGATAAATTCATGTTCATTGATTATTTAATTAATCACAATAAATTA</gDNA_template>
            <first_frame> I  D  S  P  S  L  S  F  C  S  F  L  F  L  I  Q  T  L  F  L  L  P  *  L  A  Y  N  *  E  *  R  W  Q  *  *  P  T  N  L  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  K  *  E  *  S  K  T  S  L  K  T  C  K  E  I  R  P  S  L  G  L  R  N  L  *  R  P  V  V  P  A  T  V  R  P  A  G  R  R  K  V  Q  R  L  N  F  H  Q  R  V  C  D  G  P  S  R  P  *  R  S  V  L  P  F  R  Y  E  V  Q  R  V  N  F  Q  Y  P  I  S  E  S  L  S  V  L  K  R  D  P  S  T  V  R  R  A  H  D  G  P  S  W  V  P  S  S  Q  P  V  F  P  E  I  K  S  A  A  Q  N  D  *  T  G  R  Y  N  F  T  L  E  S  Y  *  S  *  K  Y  E  F  D  H  Y  I  K  V  K  *  *  I  H  V  H  *  L  F  N  *  S  Q  *  I  </first_frame>
            <second_frame>  S  I  L  L  L  S  L  S  V  L  F  F  F  L  F  K  P  S  F  F  Y  P  N  *  H  I  I  K  N  K  D  G  N  N  N  P  L  I  Y  S  R  L  P  L  L  T  P  K  *  L  D  L  L  T  *  T  H  *  L  Y  N  *  S  R  N  S  P  K  R  P  L  K  R  V  K  K  S  D  P  A  W  D  Y  A  T  C  D  G  P  S  C  L  R  R  S  V  L  Q  V  V  A  R  F  R  D  S  I  S  T  K  E  S  V  T  V  L  H  A  R  D  G  P  S  C  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  N  L  *  V  F  *  N  E  T  P  R  R  S  V  V  L  M  T  V  R  R  G  F  R  R  L  S  L  F  F  Q  K  *  N  L  L  L  K  M  T  K  Q  V  V  T  I  L  P  L  R  V  I  N  L  K  N  M  N  S  T  I  T  *  K  L  N  D  K  F  M  F  I  D  Y  L  I  N  H  N  K  L </second_frame>
            <third_frame>   R  F  S  F  S  L  F  L  F  F  S  F  S  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  M  A  I  I  T  H  *  F  T  Q  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  K  P  T  N  F  I  I  K  V  G  I  V  Q  N  V  P  *  N  V  *  R  N  P  T  Q  P  G  I  T  Q  P  V  T  A  R  R  A  C  D  G  P  S  C  R  S  S  Q  G  S  E  T  Q  F  P  P  K  S  L  *  R  S  F  T  P  V  T  V  R  P  A  I  P  L  R  S  S  E  S  Q  F  S  V  P  N  F  R  I  S  K  C  F  E  T  R  P  L  D  G  P  S  C  S  *  R  S  V  V  G  S  V  V  S  A  C  F  S  R  N  K  I  C  C  S  K  *  L  N  R  S  L  Q  F  Y  P  *  E  L  L  I  L  K  I  *  I  R  P  L  H  K  S  *  M  I  N  S  C  S  L  I  I  *  L  I  T  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49495" stop="49253"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNSPKRPLKRVKKSDPAWDYATCDGPSCLRRSVLQVVARFRDSISTKESVTVLHARDGPSCHSVTKFRESIFSTQFQNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="49741" PGL_stop="50144"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49741" e_stop="50144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="49741" e_stop="50144" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49741" stop="50144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGTATGAATATGATTACATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAATCCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAACTAAAGTGATGAGATTAGTGGATCGGGTGTCACGAACCGACACGTAGAATTAGTGGGACGGGTGTCACGAACCGACACATAGAATTAGTGGATCNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  V  *  I  *  L  H  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  *  K  S  L  I  S  L  L  M  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  S  D  E  I  S  G  S  G  V  T  N  R  H  V  E  L  V  G  R  V  S  R  T  D  T  *  N  *  W  I  F  F  F  F  F  F   </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  Y  E  Y  D  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  E  N  P  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  A  L  V  R  K  K  A  *  *  T  K  V  M  R  L  V  D  R  V  S  R  T  D  T  *  N  *  W  D  G  C  H  E  P  T  H  R  I  S  G  S  F  F  F  F  F  F  </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  M  I  T  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  K  I  P  N  L  F  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  K  *  *  D  *  W  I  G  C  H  E  P  T  R  R  I  S  G  T  G  V  T  N  R  H  I  E  L  V  D  L  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0050N03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="50188" PGL_stop="50666"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50188" e_stop="50666"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="50188" e_stop="50666" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50188" stop="50425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50189" stop="50666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGTACCGACACAAGAGGACTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACAAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTATTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  Q  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  *  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  I  I  P  D  I  R  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  K  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  N  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  F  R  I  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  T  Y  R  H  K  R  T  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  T  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  H  Y  S  G  Y  Q  G  E  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50451" stop="50666"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISTQYPCFVLTPTFMFSSCLIVECSKRAVIFDSTVTLASLHYSGYQGELMLLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="54378" PGL_stop="53123"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54378" e_stop="53123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="54378" e_stop="53123" e_length="1256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54378" stop="53652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54378" stop="53661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54377" stop="53498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54377" stop="53681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54377" stop="53784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53863" stop="53123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578291" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATTGTAAATTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGAATTATTGCTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGACGCTTTTGTTAATAAGTCTTAAAAAAATAATAACTAGATTCCATTAATTTTTGAATGTTAAAATCAAATCATAATAATTTAGTAGGCTGATTATGTGTTTTAAAATGTTATAACTTTTAGCATTGTCTTGTCATGTAGAAATCATGCCTAAGGATTAATTTGTTCATATCATTTAGATTTACAAAATCATGCATATATGTGTTACTCCTTTTTTGAACACCTAGAAATCATGTCTATAGTCTTGTAAATAACTTTTAACATATCCATAAAAATAAAATTTGTTTGTGCATATTTGTGCCCTCCCCCTAAAATTAGTTAATGTTATTTAATTAGTAATCCTATTTGTCTTCTTGAAGATTTCCGCATTCATGATGCAATTTGTTTTTTTAATGATACTAAATTAGAATCATTTCATGCATTTAACAAATTACTTGGCTTTTAAATATATTTCATATCAAAACCTTGCAACATAATTTTCTTAAAAAGTCATTATTCAATCTTCCTTTAAAACTTTGGATTGATTATGACATTGTTTATTTTGAAAATAAATTATAAGCACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAACTACGAGGTCTAGTTCTAATTTTTAAACCCGACGCGTCCCCGAAAGTACCACCTACCCATGAATTTCAAAAGGAATTATGTGTGTTTATGTGTAAACATTTATGTGCCTACATGTAAATTAAATCTTTTAAATCATTTTCAAAAACATAAACTATTTTTTAGACCGACCTCAGATCAAAATTGTTTCTATGGTGGAGGAGCGCGATCAACAATATCGTGGCATCATCCCTATAAAGAAACAAACATTTTTTTTAAAAAAAATAATTTCATATTCAAAACTTGCTCAATTTTCAAAACTTTACTTTCGCACATATTAATTGCTTAATATTTGCCAATTTTGTTTATAACATAGTCTCATATGTTAAATAAAAGTAAAACTTGATTGTTTATTTATTGCTATCACATAGCCTTGCATGCTCAAATTAAATAATAAAATAGTATTAATTGTTTTTTTGTTATCACTTAGCAAGATTAAATAAATTAATAAATGAAGTGACTTTGATTGCTAATTGTAACCCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTT</gDNA_template>
            <first_frame> F  I  V  N  F  *  K  S  C  L  *  V  C  L  *  P  P  R  I  I  A  C  R  C  Y  N  L  I  N  F  Q  F  A  *  R  F  C  *  *  V  L  K  K  *  *  L  D  S  I  N  F  *  M  L  K  S  N  H  N  N  L  V  G  *  L  C  V  L  K  C  Y  N  F  *  H  C  L  V  M  *  K  S  C  L  R  I  N  L  F  I  S  F  R  F  T  K  S  C  I  Y  V  L  L  L  F  *  T  P  R  N  H  V  Y  S  L  V  N  N  F  *  H  I  H  K  N  K  I  C  L  C  I  F  V  P  S  P  *  N  *  L  M  L  F  N  *  *  S  Y  L  S  S  *  R  F  P  H  S  *  C  N  L  F  F  *  *  Y  *  I  R  I  I  S  C  I  *  Q  I  T  W  L  L  N  I  F  H  I  K  T  L  Q  H  N  F  L  K  K  S  L  F  N  L  P  L  K  L  W  I  D  Y  D  I  V  Y  F  E  N  K  L  *  A  L  S  P  N  L  S  L  V  G  K  S  K  E  L  R  G  L  V  L  I  F  K  P  D  A  S  P  K  V  P  P  T  H  E  F  Q  K  E  L  C  V  F  M  C  K  H  L  C  A  Y  M  *  I  K  S  F  K  S  F  S  K  T  *  T  I  F  *  T  D  L  R  S  K  L  F  L  W  W  R  S  A  I  N  N  I  V  A  S  S  L  *  R  N  K  H  F  F  *  K  K  *  F  H  I  Q  N  L  L  N  F  Q  N  F  T  F  A  H  I  N  C  L  I  F  A  N  F  V  Y  N  I  V  S  Y  V  K  *  K  *  N  L  I  V  Y  L  L  L  S  H  S  L  A  C  S  N  *  I  I  K  *  Y  *  L  F  F  C  Y  H  L  A  R  L  N  K  L  I  N  E  V  T  L  I  A  N  C  N  P  H  I  D  C  M  R  Y  G  R  D  P  H   </first_frame>
            <second_frame>  S  L  *  I  F  R  N  H  A  Y  R  F  V  F  N  H  L  E  L  L  L  V  G  V  I  I  *  S  I  F  N  L  L  D  A  F  V  N  K  S  *  K  N  N  N  *  I  P  L  I  F  E  C  *  N  Q  I  I  I  I  *  *  A  D  Y  V  F  *  N  V  I  T  F  S  I  V  L  S  C  R  N  H  A  *  G  L  I  C  S  Y  H  L  D  L  Q  N  H  A  Y  M  C  Y  S  F  F  E  H  L  E  I  M  S  I  V  L  *  I  T  F  N  I  S  I  K  I  K  F  V  C  A  Y  L  C  P  P  P  K  I  S  *  C  Y  L  I  S  N  P  I  C  L  L  E  D  F  R  I  H  D  A  I  C  F  F  N  D  T  K  L  E  S  F  H  A  F  N  K  L  L  G  F  *  I  Y  F  I  S  K  P  C  N  I  I  F  L  K  S  H  Y  S  I  F  L  *  N  F  G  L  I  M  T  L  F  I  L  K  I  N  Y  K  H  Y  L  L  T  Y  R  *  W  E  S  Q  R  N  Y  E  V  *  F  *  F  L  N  P  T  R  P  R  K  Y  H  L  P  M  N  F  K  R  N  Y  V  C  L  C  V  N  I  Y  V  P  T  C  K  L  N  L  L  N  H  F  Q  K  H  K  L  F  F  R  P  T  S  D  Q  N  C  F  Y  G  G  G  A  R  S  T  I  S  W  H  H  P  Y  K  E  T  N  I  F  F  K  K  N  N  F  I  F  K  T  C  S  I  F  K  T  L  L  S  H  I  L  I  A  *  Y  L  P  I  L  F  I  T  *  S  H  M  L  N  K  S  K  T  *  L  F  I  Y  C  Y  H  I  A  L  H  A  Q  I  K  *  *  N  S  I  N  C  F  F  V  I  T  *  Q  D  *  I  N  *  *  M  K  *  L  *  L  L  I  V  T  P  T  *  I  A  *  D  T  A  G  T  H  T  </second_frame>
            <third_frame>   H  C  K  F  L  E  I  M  P  I  G  L  S  L  T  T  *  N  Y  C  L  *  V  L  *  S  N  Q  F  S  I  C  L  T  L  L  L  I  S  L  K  K  I  I  T  R  F  H  *  F  L  N  V  K  I  K  S  *  *  F  S  R  L  I  M  C  F  K  M  L  *  L  L  A  L  S  C  H  V  E  I  M  P  K  D  *  F  V  H  I  I  *  I  Y  K  I  M  H  I  C  V  T  P  F  L  N  T  *  K  S  C  L  *  S  C  K  *  L  L  T  Y  P  *  K  *  N  L  F  V  H  I  C  A  L  P  L  K  L  V  N  V  I  *  L  V  I  L  F  V  F  L  K  I  S  A  F  M  M  Q  F  V  F  L  M  I  L  N  *  N  H  F  M  H  L  T  N  Y  L  A  F  K  Y  I  S  Y  Q  N  L  A  T  *  F  S  *  K  V  I  I  Q  S  S  F  K  T  L  D  *  L  *  H  C  L  F  *  K  *  I  I  S  T  I  S  *  P  I  V  S  G  K  V  K  G  T  T  R  S  S  S  N  F  *  T  R  R  V  P  E  S  T  T  Y  P  *  I  S  K  G  I  M  C  V  Y  V  *  T  F  M  C  L  H  V  N  *  I  F  *  I  I  F  K  N  I  N  Y  F  L  D  R  P  Q  I  K  I  V  S  M  V  E  E  R  D  Q  Q  Y  R  G  I  I  P  I  K  K  Q  T  F  F  L  K  K  I  I  S  Y  S  K  L  A  Q  F  S  K  L  Y  F  R  T  Y  *  L  L  N  I  C  Q  F  C  L  *  H  S  L  I  C  *  I  K  V  K  L  D  C  L  F  I  A  I  T  *  P  C  M  L  K  L  N  N  K  I  V  L  I  V  F  L  L  S  L  S  K  I  K  *  I  N  K  *  S  D  F  D  C  *  L  *  P  P  H  R  L  H  E  I  R  P  G  P  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53660" stop="53355"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLNPTRPRKYHLPMNFKRNYVCLCVNIYVPTCKLNLLNHFQKHKLFFRPTSDQNCFYGGGARSTISWHHPYKETNIFFKKNNFIFKTCSIFKTLLSHILIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="70502" PGL_stop="71054"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70502" e_stop="71054"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="70502" e_stop="71054" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70502" stop="71054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAAATGAGCAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATTAATCAGGTTCTTGCCTATCTTAGCGGGTTATATGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCAGCTACTGTGGCTCCCCGCATGGATGTCTCATTGGAAATAGGCACGTTTCCTCGGTTGACTACAGGGCTATAATGACAAGTGATCAACATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGTTATTACATAAAATGGGCATAGTGGAACGATTTGGTGTTGAGTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCTGCACAGGCACCACCTATGACTTGGGCGTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  S  K  R  G  *  G  R  G  K  *  A  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  *  S  G  S  C  L  S  *  R  V  I  *  S  R  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  S  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  V  D  Y  R  A  I  M  T  S  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  L  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  A  Q  A  P  P  M  T  W  A  S  F  </first_frame>
            <second_frame>  P  S  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  Y  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  V  S  L  E  I  G  T  F  P  R  L  T  T  G  L  *  *  Q  V  I  N  M  N  F  S  V  S  S  *  N  *  N  L  *  S  S  R  V  L  N  L  R  M  P  T  I  F  W  L  T  V  M  S  Y  Y  I  K  W  A  *  W  N  D  L  V  L  S  L  *  P  I  S  F  R  E  M  P  K  C  G  G  G  H  M  L  S  V  N  L  H  R  H  H  L  *  L  G  R  H  S </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  R  L  R  K  *  *  E  R  V  R  K  G  K  M  S  K  C  R  M  R  N  C  H  P  N  L  P  Q  R  *  L  I  R  F  L  P  I  L  A  G  Y  M  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  M  Q  L  L  W  L  P  A  W  M  S  H  W  K  *  A  R  F  L  G  *  L  Q  G  Y  N  D  K  *  S  T  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  V  I  T  *  N  G  H  S  G  T  I  W  C  *  V  C  N  L  S  V  S  G  K  C  Q  N  V  V  A  V  T  C  *  V  S  T  C  T  G  T  T  Y  D  L  G  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70667" stop="71053"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRPDTSSVFCTSTSGSGGTTCSYCGSPHGCLIGNRHVSSVDYRAIMTSDQHELFSKFLKLKPLVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPAQAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70503" stop="70802"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSGTRAVTPPPTEEVVREGEEGENEQVQNEELPPQPTPEMINQVLAYLSGLYDQGQTPPVFSAPAPQVPEVQHAATVAPRMDVSLEIGTFPRLTTGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="72188" PGL_stop="71858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72188" e_stop="71858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="72188" e_stop="71858" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72188" stop="71858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCTAAGATTGCAAAGTTTGGAGAAAACGAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAACGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCGCAAGGTAAATTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTAGAGCCAGGATCAAATAATACAGAAGCCATGCAATCGCAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  L  R  L  Q  S  L  E  K  T  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  Q  T  L  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  R  K  V  N  *  D  Q  *  Q  M  R  K  I  H  M  K  M  *  S  Q  D  Q  I  I  Q  K  P  C  N  R  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  *  D  C  K  V  W  R  K  R  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  R  Y  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  A  R  *  I  K  T  S  S  K  *  G  R  Y  I  *  K  C  R  A  R  I  K  *  Y  R  S  H  A  I  A  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  N  E  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  N  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  G  K  L  R  P  V  A  N  E  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  A  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72057" stop="71860"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTNVTRQDLYTFSTITDSPTGVETRIGMSSNSQGKLRPVANEEDTYENVEPGSNNTEAMQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="71888" PGL_stop="72548"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71888" e_stop="72548"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="71888" e_stop="72548" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71888" stop="72548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCCTGGCTCTACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTAATTTACCTTGCGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTAACGTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTCGTTTTCTCCAAACTTTGCAATCTTAGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTGTCATATCCTTTCTTCGCGCTAAGAAAATGGTTAGTAAGAGTTGTTTAGCGTTCTTGGCACATCTTAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTAGTCCATGAGTTTCTGGATGTGTTTCCTGCAGACCTTCTTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTACTCGCCCCATTTCCATACCCCCTTATAGGATGGCTCCCGCTGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGCAAAGGCTTCATTAGACCAAGTGCATTTCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  T  G  L  N  L  P  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  T  F  V  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  S  F  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  V  I  S  F  L  R  A  K  K  M  V  S  K  S  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  H  E  F  L  D  V  F  P  A  D  L  L  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  F  P  W  </first_frame>
            <second_frame>  L  I  L  A  L  H  F  H  M  Y  L  P  H  L  L  L  V  L  I  Y  L  A  N  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  L  *  R  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  I  L  M  *  F  W  V  *  L  R  F  L  Q  T  L  Q  S  *  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  F  V  S  Y  P  F  F  A  L  R  K  W  L  V  R  V  V  *  R  S  W  H  I  L  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  S  M  S  F  W  M  C  F  L  Q  T  F  L  V  C  H  R  I  G  I  L  T  F  A  L  I  W  S  R  V  L  A  P  F  P  Y  P  L  I  G  W  L  P  L  S  *  E  S  *  R  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  F  L  G </second_frame>
            <third_frame>   *  S  W  L  Y  I  F  I  C  I  F  L  I  C  Y  W  S  *  F  T  L  R  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  K  G  V  *  V  L  S  C  N  V  C  G  E  Q  Y  S  C  R  L  G  Y  L  R  N  G  *  F  *  C  N  S  G  Y  D  F  V  F  S  K  L  C  N  L  R  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  S  C  H  I  L  S  S  R  *  E  N  G  *  *  E  L  F  S  V  L  G  T  S  *  G  *  Y  Y  P  S  T  F  N  *  V  G  F  G  S  P  *  V  S  G  C  V  S  C  R  P  S  W  Y  A  T  G  *  G  Y  *  L  L  H  *  S  G  A  G  Y  S  P  H  F  H  T  P  L  *  D  G  S  R  *  V  K  R  V  K  G  P  T  S  R  V  V  K  Q  R  L  H  *  T  K  C  I  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71888" stop="72547"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFATGLNLPCELLDMPIRVSTPVGESVIVEKVYRSCLVTFVGSNTHVDLVILEMVDFDVILGMTSFSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRVISFLRAKKMVSKSCLAFLAHLRDDTTQVPSIESVSVVHEFLDVFPADLLGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSAFPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="74440" PGL_stop="73409"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74440" e_stop="73409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="74440" e_stop="73409" e_length="1032"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74440" stop="73899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73995" stop="73409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73995" stop="73409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73995" stop="73442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTGCCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAATCGAACAATCTCTGTGATGTAAAGTTTGGCTAACTTCTTTGCATTGTAAGTCACCTTAACCGGAATGAAGTGAGTAGACTTAGTTAACCTATCAACAATTACCCAAATGGAGTCATACTTACGCGTTGTCTTTGGAAGACCAACCACGAAACCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAACATTCTCTGAAGTGTCCCTCCGGGCCTCTGGTGTTCATACTTTATTTGCTGACAATTCAGGCATTGAGCAACAAAGTCAACAATGTCACGCTTCATTCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCTTCTGTAAGAATAGTGTGGATCAAATCACCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATTGATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCTGGATCAATTTCTCATCAGTAAACTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAACCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTGGAAACCTGTAAGTAAGCTAGGCTTCCCATGCTCCCTGCTTTTCTACTTAACGCATTTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATGTCATAGTCTTTCAGTAGTTCTATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACACCTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACTACCGCTAACTCTAAATCGTGGGTCGGATAATTACGTTCGTGCACCTTTAATTGC</gDNA_template>
            <first_frame> S  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  I  S  V  M  *  S  L  A  N  F  F  A  L  *  V  T  L  T  G  M  K  *  V  D  L  V  N  L  S  T  I  T  Q  M  E  S  Y  L  R  V  V  F  G  R  P  T  T  K  P  I  A  I  L  S  H  F  H  S  G  M  N  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  I  C  *  Q  F  R  H  *  A  T  K  S  T  M  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  W  I  K  S  P  T  R  G  T  H  T  L  P  L  I  L  K  T  P  S  S  L  I  F  A  S  L  A  S  P  R  N  T  L  S  R  I  W  I  N  F  S  S  V  N  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  P  P  F  S  F  T  S  N  L  I  R  S  L  A  R  V  *  T  S  L  A  N  G  R  L  E  T  C  K  *  A  R  L  P  M  L  P  A  F  L  L  N  A  F  A  T  T  L  A  F  P  G  *  Y  K  I  V  M  S  *  S  F  S  S  S  I  H  L  L  C  L  K  F  K  S  F  *  V  K  T  Y  C  K  L  R  *  S  V  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  T  T  A  N  S  K  S  W  V  G  *  L  R  S  C  T  F  N  C </first_frame>
            <second_frame>  P  H  A  M  F  S  K  T  *  K  *  T  A  C  L  Y  L  I  *  W  R  V  E  P  H  A  I  E  Q  S  L  *  C  K  V  W  L  T  S  L  H  C  K  S  P  *  P  E  *  S  E  *  T  *  L  T  Y  Q  Q  L  P  K  W  S  H  T  Y  A  L  S  L  E  D  Q  P  R  N  P  L  Q  F  S  P  T  S  I  Q  E  *  T  F  S  E  V  S  L  R  A  S  G  V  H  T  L  F  A  D  N  S  G  I  E  Q  Q  S  Q  Q  C  H  A  S  F  Y  S  T  K  N  V  A  L  G  H  D  T  S  W  L  H  Q  D  V  *  N  T  L  N  Y  E  L  L  *  E  *  C  G  S  N  H  R  R  G  V  H  I  P  F  P  *  F  S  K  H  L  P  H  *  F  L  L  L  *  P  L  L  A  T  P  Y  L  G  S  G  S  I  S  H  Q  *  T  A  F  P  *  S  C  Q  E  R  K  I  L  P  P  H  R  P  K  I  L  P  S  H  L  L  L  T  S  *  G  H  *  P  E  S  E  P  L  *  P  M  G  V  W  K  P  V  S  K  L  G  F  P  C  S  L  L  F  Y  L  T  H  L  P  Q  H  *  L  F  P  D  D  T  R  *  *  C  H  S  L  S  V  V  L  S  T  S  S  V  S  N  S  N  L  S  E  *  R  H  T  V  N  Y  D  D  P  Y  R  L  H  T  *  P  H  I  D  N  V  S  I  A  L  M  Q  T  L  L  P  L  T  L  N  R  G  S  D  N  Y  V  R  A  P  L  I   </second_frame>
            <third_frame>   R  M  Q  C  F  P  K  L  R  S  K  L  R  A  S  I  *  Y  D  G  E  W  N  P  M  Q  S  N  N  L  C  D  V  K  F  G  *  L  L  C  I  V  S  H  L  N  R  N  E  V  S  R  L  S  *  P  I  N  N  Y  P  N  G  V  I  L  T  R  C  L  W  K  T  N  H  E  T  H  C  N  S  L  P  L  P  F  R  N  E  H  S  L  K  C  P  S  G  P  L  V  F  I  L  Y  L  L  T  I  Q  A  L  S  N  K  V  N  N  V  T  L  H  S  T  P  P  K  M  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  F  C  K  N  S  V  D  Q  I  T  D  A  G  Y  T  Y  P  S  L  N  S  Q  N  T  F  L  I  D  F  C  F  F  S  L  S  S  Q  H  L  I  S  D  L  D  Q  F  L  I  S  K  L  L  S  L  N  L  V  K  K  G  R  S  C  L  H  T  G  Q  K  S  S  L  L  I  Y  F  *  P  H  K  V  I  S  Q  S  L  N  L  S  S  Q  W  A  S  G  N  L  *  V  S  *  A  S  H  A  P  C  F  S  T  *  R  I  C  H  N  I  S  F  S  R  M  I  Q  D  S  D  V  I  V  F  Q  *  F  Y  P  P  P  L  S  Q  I  Q  I  F  L  S  K  D  I  L  *  T  T  M  I  R  I  D  F  T  P  N  P  I  *  I  M  S  P  L  L  *  C  K  H  Y  Y  R  *  L  *  I  V  G  R  I  I  T  F  V  H  L  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73996" stop="73736"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASVRIVWIKSPTRGTHTLPLILKTPSSLIFASLASPRNTLSRIWINFSSVNCFPLILSRKEDLASTQAKNPPFSFTSNLIRSLARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74003" stop="73764"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSFCKNSVDQITDAGYTYPSLNSQNTFLIDFCFFSLSSQHLISDLDQFLISKLLSLNLVKKGRSCLHTGQKSSLLIYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74273" stop="74049"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINNYPNGVILTRCLWKTNHETHCNSLPLPFRNEHSLKCPSGPLVFILYLLTIQALSNKVNNVTLHSTPPKMLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="75377" PGL_stop="75766"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75377" e_stop="75766"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="75377" e_stop="75766" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75377" stop="75766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242274" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGTCGACGGATCCCACGACGGACCGTCATGAGCACGACGGACCGTGGAGGGTGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAGATCGACTCTCTGAACTTCGCGACGAAATGGCAGGACGGACCGTCACAGGCATGACGGGCTGTCACAAACCCTTAGTGAAATTTAGTCTCTGAACTTTGTGACGGAAGCAGCAGGACGGACCGTCGCAGGCACGACTGGTCGTCACAGACTGCGTAACCCTGACTGGGTCGGATTTTTGTTAAATGTTTTAAGGGGCGTTTTGGACTATTCCTGCTTATAATTATGAAATTAGTGGTTTAATGTTAATAATTCAATTACTTGGGGGGTTAAAGGAGATAACCTTGAATTAATT</gDNA_template>
            <first_frame> *  V  D  G  S  H  D  G  P  S  *  A  R  R  T  V  E  G  V  S  F  Q  N  T  *  N  S  E  I  W  V  L  R  S  T  L  *  T  S  R  R  N  G  R  T  D  R  H  R  H  D  G  L  S  Q  T  L  S  E  I  *  S  L  N  F  V  T  E  A  A  G  R  T  V  A  G  T  T  G  R  H  R  L  R  N  P  D  W  V  G  F  L  L  N  V  L  R  G  V  L  D  Y  S  C  L  *  L  *  N  *  W  F  N  V  N  N  S  I  T  W  G  V  K  G  D  N  L  E  L  I </first_frame>
            <second_frame>  E  S  T  D  P  T  T  D  R  H  E  H  D  G  P  W  R  V  S  R  S  K  T  L  R  I  L  K  F  G  Y  *  D  R  L  S  E  L  R  D  E  M  A  G  R  T  V  T  G  M  T  G  C  H  K  P  L  V  K  F  S  L  *  T  L  *  R  K  Q  Q  D  G  P  S  Q  A  R  L  V  V  T  D  C  V  T  L  T  G  S  D  F  C  *  M  F  *  G  A  F  W  T  I  P  A  Y  N  Y  E  I  S  G  L  M  L  I  I  Q  L  L  G  G  L  K  E  I  T  L  N  *   </second_frame>
            <third_frame>   S  R  R  I  P  R  R  T  V  M  S  T  T  D  R  G  G  C  L  V  P  K  H  L  E  F  *  N  L  G  T  E  I  D  S  L  N  F  A  T  K  W  Q  D  G  P  S  Q  A  *  R  A  V  T  N  P  *  *  N  L  V  S  E  L  C  D  G  S  S  R  T  D  R  R  R  H  D  W  S  S  Q  T  A  *  P  *  L  G  R  I  F  V  K  C  F  K  G  R  F  G  L  F  L  L  I  I  M  K  L  V  V  *  C  *  *  F  N  Y  L  G  G  *  R  R  *  P  *  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0050N03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="77066" PGL_stop="79153"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77066" e_stop="77175"/>
            <exon e_start="77253" e_stop="77329"/>
            <exon e_start="77410" e_stop="77491"/>
            <exon e_start="77563" e_stop="77610"/>
            <exon e_start="78256" e_stop="78411"/>
            <exon e_start="78485" e_stop="78581"/>
            <exon e_start="78693" e_stop="78735"/>
            <exon e_start="78904" e_stop="78971"/>
            <exon e_start="79069" e_stop="79153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.731" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.573" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.660" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77066" e_stop="77175" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.995">
            <gDNA_intron_boundary i_start="77176" i_stop="77252" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77253" e_stop="77329" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.731" acc_prob="0.998">
            <gDNA_intron_boundary i_start="77330" i_stop="77409" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77410" e_stop="77491" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.975">
            <gDNA_intron_boundary i_start="77492" i_stop="77562" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77563" e_stop="77610" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="77611" i_stop="78255" i_length="645"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78256" e_stop="78411" e_length="156"/>
          </exon>
          <intron i_serial="5" don_prob="0.573" acc_prob="0.994">
            <gDNA_intron_boundary i_start="78412" i_stop="78484" i_length="73"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="78485" e_stop="78581" e_length="97"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="78582" i_stop="78692" i_length="111"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="78693" e_stop="78735" e_length="43"/>
          </exon>
          <intron i_serial="7" don_prob="0.660" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78736" i_stop="78903" i_length="168"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="78904" e_stop="78971" e_length="68"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.969">
            <gDNA_intron_boundary i_start="78972" i_stop="79068" i_length="97"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="79069" e_stop="79153" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77066" stop="77175"/>
              <exon start="77253" stop="77329"/>
              <exon start="77410" stop="77491"/>
              <exon start="77563" stop="77610"/>
              <exon start="78256" stop="78340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77073" stop="77175"/>
              <exon start="77253" stop="77329"/>
              <exon start="77410" stop="77491"/>
              <exon start="77563" stop="77610"/>
              <exon start="78256" stop="78365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77073" stop="77175"/>
              <exon start="77253" stop="77329"/>
              <exon start="77410" stop="77491"/>
              <exon start="77563" stop="77610"/>
              <exon start="78256" stop="78314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77080" stop="77175"/>
              <exon start="77253" stop="77329"/>
              <exon start="77410" stop="77491"/>
              <exon start="77563" stop="77610"/>
              <exon start="78256" stop="78411"/>
              <exon start="78485" stop="78581"/>
              <exon start="78693" stop="78735"/>
              <exon start="78904" stop="78971"/>
              <exon start="79069" stop="79153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77083" stop="77175"/>
              <exon start="77253" stop="77329"/>
              <exon start="77410" stop="77440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77086" stop="77175"/>
              <exon start="77253" stop="77329"/>
              <exon start="77410" stop="77491"/>
              <exon start="77563" stop="77610"/>
              <exon start="78256" stop="78411"/>
              <exon start="78485" stop="78573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77088" stop="77175"/>
              <exon start="77253" stop="77329"/>
              <exon start="77410" stop="77491"/>
              <exon start="77563" stop="77610"/>
              <exon start="78256" stop="78411"/>
              <exon start="78485" stop="78581"/>
              <exon start="78693" stop="78735"/>
              <exon start="78904" stop="78959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77088" stop="77175"/>
              <exon start="77253" stop="77329"/>
              <exon start="77410" stop="77491"/>
              <exon start="77563" stop="77610"/>
              <exon start="78256" stop="78396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77090" stop="77175"/>
              <exon start="77253" stop="77329"/>
              <exon start="77410" stop="77491"/>
              <exon start="77563" stop="77610"/>
              <exon start="78256" stop="78411"/>
              <exon start="78485" stop="78523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77102" stop="77175"/>
              <exon start="77253" stop="77329"/>
              <exon start="77410" stop="77491"/>
              <exon start="77563" stop="77610"/>
              <exon start="78256" stop="78411"/>
              <exon start="78485" stop="78579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77103" stop="77175"/>
              <exon start="77253" stop="77329"/>
              <exon start="77410" stop="77491"/>
              <exon start="77563" stop="77610"/>
              <exon start="78256" stop="78411"/>
              <exon start="78485" stop="78581"/>
              <exon start="78693" stop="78735"/>
              <exon start="78904" stop="78927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77103" stop="77175"/>
              <exon start="77253" stop="77329"/>
              <exon start="77410" stop="77491"/>
              <exon start="77563" stop="77610"/>
              <exon start="78256" stop="78411"/>
              <exon start="78485" stop="78575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77112" stop="77175"/>
              <exon start="77253" stop="77329"/>
              <exon start="77410" stop="77491"/>
              <exon start="77563" stop="77610"/>
              <exon start="78256" stop="78411"/>
              <exon start="78485" stop="78553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77295" stop="77329"/>
              <exon start="77410" stop="77491"/>
              <exon start="77563" stop="77610"/>
              <exon start="78256" stop="78411"/>
              <exon start="78485" stop="78581"/>
              <exon start="78693" stop="78735"/>
              <exon start="78904" stop="78971"/>
              <exon start="79069" stop="79121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77585" stop="77610"/>
              <exon start="78256" stop="78411"/>
              <exon start="78485" stop="78581"/>
              <exon start="78693" stop="78735"/>
              <exon start="78904" stop="78929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204883" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGCTCCCATTCATACTCTTCTCCTAATCGTCTCCAAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTCAGTCATGGAAGGATTTGCGA : GCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAATGATGGT : GGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAG : GCAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCAT : ATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGCGTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTGAGAGGGTTCGCAGTGGTTCCTGG : GTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATAGGTGGCAGTTTCTTGGGCCCTTTGTTCGTACACACAGCACTTCAAACAG : AAGCGGAGGCTAGTGAGTGTGCAAGAGGGCGCCAGTTGCGATT : TCTCGCGAATGTTGATCCAATTGATGTAGCCCGAAATATAACAGGCTTGAATCCTGAAACAACTCTAG : TTGTGGTGGTCTCAAAGACTTTTACTACAGCCGAGACAATGCTAAATGCCCGTACAATGAGGGAATGGATCTCCTCTGCATTAGG</gDNA_template>
            <first_frame> S  A  P  I  H  T  L  L  L  I  V  S  K  E  *  N  F  I  Q  K  W  L  H  L  L  *  L  A  I  L  S  H  G  R  I  C  E :   L  M  L  K  K  L  T  K  L  I  C  V  I  C  *  I  T  L  I  D  V  N  Q  *  W   : W  S  L  M  G  F  *  S  I  T  R  D  K  E  P  P  L  I  H  *  K  S  S  S  I  *  L  R :   Q  H  M  L  R  R  R  L  F  G  C  S  M  E  S  I :   *  T  A  Q  K  T  D  P  F  F  M  L  H  C  V  L  Q  G  M  Q  S  *  I  V  T  G  R  M  L  F  L  R  F  G  M  Y  L  I  R  S  E  T  S  L  R  G  F  A  V  V  P  G :   L  E  P  Q  E  K  H  *  K  M  L  *  L  L  V  *  V  A  V  S  W  A  L  C  S  Y  T  Q  H  F  K  Q  :  K  R  R  L  V  S  V  Q  E  G  A  S  C  D   : F  S  R  M  L  I  Q  L  M  *  P  E  I  *  Q  A  *  I  L  K  Q  L  *  :  L  W  W  S  Q  R  L  L  L  Q  P  R  Q  C  *  M  P  V  Q  *  G  N  G  S  P  L  H  *  </first_frame>
            <second_frame>  Q  L  P  F  I  L  F  S  *  S  S  P  K  S  K  I  L  F  R  N  G  F  I  C  F  N  *  R  Y  S  V  M  E  G  F  A   : S  S  C  *  R  N  *  Q  N  S  F  A  *  F  V  E  S  H  *  S  M  S  I  N  D  G  :  G  V  *  W  D  S  D  R  L  L  E  T  K  S  H  P  *  Y  I  E  K  A  L  Q  F  S  *   : G  S  T  C  *  G  E  D  Y  S  D  V  Q  W  R  A   : Y  K  Q  H  R  K  Q  T  R  S  S  C  C  T  A  C  S  K  G  C  S  H  K  *  *  R  E  E  C  C  S  *  G  L  A  C  T  *  *  D  P  R  L  L  *  E  G  S  Q  W  F  L   : G  W  S  H  R  K  S  I  E  R  C  C  S  C  W  Y  R  W  Q  F  L  G  P  F  V  R  T  H  S  T  S  N  R :   S  G  G  *  *  V  C  K  R  A  P  V  A  I  :  S  R  E  C  *  S  N  *  C  S  P  K  Y  N  R  L  E  S  *  N  N  S  S :   C  G  G  L  K  D  F  Y  Y  S  R  D  N  A  K  C  P  Y  N  E  G  M  D  L  L  C  I  R </second_frame>
            <third_frame>   S  S  H  S  Y  S  S  P  N  R  L  Q  R  V  K  F  Y  S  E  M  A  S  S  A  L  I  S  D  T  Q  S  W  K  D  L  R  :  A  H  V  E  E  I  N  K  T  H  L  R  D  L  L  N  H  T  D  R  C  Q  S  M  M  V :   E  F  D  G  I  L  I  D  Y  S  R  Q  R  A  T  L  D  T  L  K  K  L  F  N  L  A  E  :  A  A  H  V  K  E  K  I  I  R  M  F  N  G  E  H  :  I  N  S  T  E  N  R  P  V  L  H  V  A  L  R  A  P  R  D  A  V  I  N  S  D  G  K  N  V  V  P  E  V  W  H  V  L  D  K  I  R  D  F  S  E  R  V  R  S  G  S  W  :  V  G  A  T  G  K  A  L  K  D  V  V  A  V  G  I  G  G  S  F  L  G  P  L  F  V  H  T  A  L  Q  T   : E  A  E  A  S  E  C  A  R  G  R  Q  L  R  F :   L  A  N  V  D  P  I  D  V  A  R  N  I  T  G  L  N  P  E  T  T  L   : V  V  V  V  S  K  T  F  T  T  A  E  T  M  L  N  A  R  T  M  R  E  W  I  S  S  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0050N03.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77068" stop="77175"/>
                    <exon start="77253" stop="77329"/>
                    <exon start="77410" stop="77491"/>
                    <exon start="77563" stop="77610"/>
                    <exon start="78256" stop="78411"/>
                    <exon start="78485" stop="78581"/>
                    <exon start="78693" stop="78735"/>
                    <exon start="78904" stop="78971"/>
                    <exon start="79069" stop="79151"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSHSYSSPNRLQRVKFYSEMASSALISDTQSWKDLRAHVEEINKTHLRDLLNHTDRCQSMMVEFDGILIDYSRQRATLDTLKKLFNLAEAAHVKEKIIRMFNGEHINSTENRPVLHVALRAPRDAVINSDGKNVVPEVWHVLDKIRDFSERVRSGSWVGATGKALKDVVAVGIGGSFLGPLFVHTALQTEAEASECARGRQLRFLANVDPIDVARNITGLNPETTLVVVVSKTFTTAETMLNARTMREWISSAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 289 chains have been computed
$ 
$ memory statistics:
$ 115792 bytes spliced alignments in total
$ 52 spliced alignments have been stored
$ 2226 bytes was the average size of a spliced alignment
$ 22440 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1496 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 339 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 23:32:17
-->
