<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-28 10:15:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242172" ref_strand="+" ref_description="SGN-E242172 [cLED-37-C23]">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="5497" stop="6491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5797" g_stop="6191" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E242172" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5797" e_stop="6191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAAAACTGTTGGATCACAAGTCCAAGAACTTCAACTTATTCTCCATGATCTCATTGCTGAAGATATGGTAGTAAATGAAGTTTTTCAAGTGACTGCAATGATCAAGAAGTTCCCTGCTTCGTGGAACGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGGCTCAAGATTAAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCACTGGAGTTAATATTGTTGAAGAAGCTCCAACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGGTCTTCTAA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242208" ref_strand="+" ref_description="SGN-E242208 [cLED-37-E10]">
      <seq>gtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgggattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcccgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="5501" stop="6463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5801" g_stop="6163" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E242208" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5801" e_stop="6163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAACTGTTGGATCACAAGTCCAAGAACTTCAACTTATTCTCCATGATCTCATTGCTGAAGATATGGTAGTAAATGAAGTTTTTCAAGTGACTGCAATGATCAAGAAGTTCCCTGCTTCGTGGAACGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGGCTCAAGATTAAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCACTGGAGTTAATATTGTTGAAGAAGCTCCAACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATT</genome_strand>
        <mrna_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGGGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCCCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9685" stop="10462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9985" g_stop="10161" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9985" e_stop="10161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11166" stop="12478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11466" g_stop="12178" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11466" e_stop="12178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCTTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCCTCCTTATAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTTCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACCACAATTTCGTAATGTCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTATTCAGTTGTCTGTAGTCTATGAACATCCGAAAACTCCCATCCTTCTTCTTCACAAAAAAAACCGGGGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCGACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCTACGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11166" stop="12361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11466" g_stop="12061" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11466" e_stop="12061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCTTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCCTCCTTATAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTTCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACCACAATTTCGTAATGTCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTATTCAGTTGTCTGTAGTCTATGAACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11166" stop="12291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11466" g_stop="11990" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11466" e_stop="11990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCTTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCCTCCTTATAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTTCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACCACAATTTCGTAATGTCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTGATCGAACAAGTCATCAAT</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11237" stop="12516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11537" g_stop="12216" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11537" e_stop="12216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCCTCCTTATAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTTCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACCACAATTTCGTAATGTCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTATTCAGTTGTCTGTAGTCTATGAACATCCGAAAACTCCCATCCTTCTTCTTCACAAAAAAAACCGGGGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCGACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTG</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11237" stop="12195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11537" g_stop="11895" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11537" e_stop="11895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCCTCCTTATAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTTCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACCACAATTTCGTAATGTCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11686" stop="12908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11986" g_stop="12644" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11986" e_stop="12644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTATTCAGTTGTCTGTAGTCTATGAACATCCGAAAACTCCCATCCTTCTTCTTCACAAAAAAAACCGGGGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCGACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACGAACTACTGAAACCGACTCAATCGCAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCTTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAATGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCGACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11755" stop="13116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12055" g_stop="12816" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12055" e_stop="12816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAAAAAAACCGGGGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCGACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACGAACTACTGAAACCGACTCAATCGCAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCTTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAATGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCGACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAATACGAAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11755" stop="13015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12055" g_stop="12715" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12055" e_stop="12715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAAAAAAACCGGGGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCGACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACGAACTACTGAAACCGACTCAATCGCAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCTTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAATGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCGACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="12365" stop="13523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12665" g_stop="13223" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12665" e_stop="13223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGAAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTCCCCCTACCATGTTGTGATGTGGTGGCCCCATTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCCCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCAGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 [cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="12369" stop="13732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12669" g_stop="13432" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12669" e_stop="13432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGAAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTCCCCCTACCATGTTGTGATGTGGTGGCCCCATTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCCCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCAGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACCTCCCATTCGAAACCTTTTTGATGTTGATGTCGTAGTGAAGTAGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATTTGCTCTTG-GGGACTAAAACATAATTGAGTGGCATATCTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACT-GAACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="12449" stop="13838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12749" g_stop="13538" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12749" e_stop="13538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACGAAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTCCCCCTACCATGTTGTGATGTGGTGGCCCCATTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCCCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCAGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACCTCCCATTCGAAACCTTTTTGATGTTGATGTCGTAGTGAAGTAGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATTTGCTCTTGGGGACTAAAACATAATTGAGTGGCATATCTGGATAGTGCGTGAAACCTAGCCTCGTAAGCATTTACCGACATCATACCTTGCTCTAGGCTCAAGAACTAATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="12451" stop="13584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12751" g_stop="13284" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12751" e_stop="13284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACGAAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTCCCCCTACCATGTTGTGATGTGGTGGCCCCATTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCCCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCAGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACCTCCCATTCGAAACCTTTTTGATGTTGATGTCGTAGTGAAGTAGTCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="12525" stop="13822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12825" g_stop="13522" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12825" e_stop="13522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTCCCCCTACCATGTTGTGATGTGGTGGCCCCATTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCCCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCAGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACCTCCCATTCGAAACCTTTTTGATGTTGATGTCGTAGTGAAGTAGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATTTGCTCTTGGGGACTAAAACATAATTGAGTGGCATATCTGGATAGTGCGTGAAACCTAGCCTCGTAAGCATTTACCGACATCATACCTTGCTCTAGGCTCAAGAACTAATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="13086" stop="14405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13386" g_stop="14105" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13386" e_stop="14105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATTTGCTCTTGGGGACTAAAACATAATTGAGTGGCATATCTGGATAGTGCGTGAAACCTAGCCTCGTAAGCATTTACCGACATCATACCTTGCTCTAGGCTCAAGAACTAATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAATTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGCTGGGGTGGCAGTTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCT-TATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="13089" stop="14354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13389" g_stop="14052" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13389" e_stop="14052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGCTCTTGGGGACTAAAACATAATTGAGTGGCATATCTGGATAGTGCGTGAAACCTAGCCTCGTAAGCATTTACCGACATCATACCTTGCTCTAGGCTCAAGAACTAATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAATTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGCTGGGGTGGCAGTTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="14409" stop="13256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14109" g_stop="13556" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14109" e_stop="13556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAACTGCCACCCCAGCCTACCCCAGAGATGATCAATCAGGTTCTCGCCTATCTCAGTGGGTTGTCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCGCCAACACCTCCGGTTTCAGAAGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAATTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="13444" stop="14477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13744" g_stop="14176" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13744" e_stop="14176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGCTGGGGTGGCAGTTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCATGACCCCTACCACGGCCTCTTGCCGCTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392027" ref_strand="+" ref_description="SGN-E392027 [TUS-24-O2](-)">
      <seq>cagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagactactcttagtttagtcatttgatcgtagatgttcttgtggtgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="15195" stop="13883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14895" g_stop="14183" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E392027" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14895" e_stop="14183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAACGTGCCGTCGTCTTCGACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTCGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTCTTAGAATACTCTTAGTTTAGTAATTTGATTATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATAGAAGTTGAT-TATTGATTTTTA-TTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTATATTGAAATGTTAAGGTCCAGATTGGTTGGTTCGCTCACACAGGAGGGTAAGTGTGGGTACCAGTCGCGGCCCGGTTTTGGGTCATGACAAGACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTGAGGATTAGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAGGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATTTTCACTCTCTTTCGTAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCACCAGCGGGACAGGGTGTGTCTGAGCCAGCCAATGGGGCTGTAG</genome_strand>
        <mrna_strand>CAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTT-TTAGACTACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGGT-TAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTT-GGTCGTGACAA-ACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAATTCCATTCTTTC-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCAGCACCGGCGGGACAGGGTGCGACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216150" ref_strand="+" ref_description="SGN-E216150 [cLEL-13-M23](-)">
      <seq>agtaactcaagccagtcctactacatcggaaattcagggtgagctaatgcttctaggtttgactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcgtatgtatttttagcttcttagaatactcttagtttagtaattttatgatagaggctctggtgatgatgacttccagattttggggaatgataagttttgagttatacaagttgattattgatttttattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="15165" stop="14317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14865" g_stop="14618" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="249" polyA_stop="265"/>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E216150" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14865" e_stop="14618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTCGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTCTTAGAATACTCTTAGTTTAGTAATTTGATTATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATAGAAGTTGATTATTGATTTTTATTA</genome_strand>
        <mrna_strand>AGTAACTCAAGCCAGTCCTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGGTTTGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCGTATGTATTTTTAGCTTCTTAGAATACTCTTAGTTTAGTAATTTTATGATAGAGGCTCTGGTGATGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATACAAGTTGATTATTGATTTTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="15437" stop="14601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15137" g_stop="14901" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15137" e_stop="14901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGCTGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGTTGCATGCTAAAGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTT-GTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="16079" stop="14693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15779" g_stop="15587" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15586" i_stop="15319" i_length="268">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15318" g_stop="14993" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="515" r_length="325" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15779" e_stop="15587"/>
          <exon e_start="15318" e_stop="14993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGTTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACTAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATACGGATCAGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATAAGGATCGGAGTGTTACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCAGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACTAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGTATATTGAGGGGTGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAGTCTTGAAAGATGATAATATATTCAAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGCTGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGTTGCATGCTAAAGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGG............................................................................................................................................................................................................................................................................GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGC-AATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18875" stop="19760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19175" g_stop="19460" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19175" e_stop="19460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGAGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTTCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCGACAACCGCGCCAACATCAACATCGACAAGACAAGAAGCATCTGAGCAAGCCACTGGGGATGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19234" stop="20387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19534" g_stop="20087" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19534" e_stop="20087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGACAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATAAATCGGGTGCTTGATTATCTTAGCGGGCTATCTGATCAAGGCCAAGTGCCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCGTGGATGCCTCATTGGAAATAGGCATGTTTCCTCGTCTGACTACAGGGCTGATAATGACAAATGATCAGCATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGATGCTGAATTGGAAGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCGCCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="21485" stop="20555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21185" g_stop="20855" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21185" e_stop="20855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGGGAAAGACAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAAAAGGTATGTCAAGCAATTCACAATGTAAATTAAGAACATTAGCAAATACAGAAGATACATTTGAAAATGTGGAGCCAGGATCAAATAATACAGAAGCCATGCAATCACAAATCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25645" stop="26454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25945" g_stop="26163" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25945" e_stop="26163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTACTCCGGATTTCAGGGTGAGCTAATGCTTCTAGCTTGGATTGGATCCTCCTCTTCATGTCTTGATGCCTTGATGTTCCGGCATGGACTAGCCGTTTATGTATTTTAGTTTCTTAGATACTCTTAGATTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAA</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAGTACATGTTCTTGTGATGATGACTGCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349726" ref_strand="-" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>ttatgttcattagattgagtatataacatctttcaagattcattgtctttatttctcttgtgtcggtacgtgacattccgctccntcatattcattaatcttcttgtgtcggtacgtgatactctgatcccctaaatctacgtgtcggaacgtgacactccgatcccctaaatctacgtgtcggttcgtgacacctgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaatctatgtgttggttcgtgacacctgatcccttaatctacgtgtcggtttgtgacacccgatcccctaattctacgtgtcagttcgtgacacccgatcccctaatctcattctatcaattcatcaagccttctcccttaccaaggcatcatcaatctcattactttagttcatcaagccttctcccttaccaaggcatcatcattaaaaagagattaggtttttacaagatttgggattcaataacttcatcatgcttatataataacaattatatagttacattcatgcaagcatacaattaagcacatagcagggtttacaatattatcaatacatatcattctctattaagagtttactacgaatatcgtaagagaaacaataacctacctccaccgaagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41599" stop="33246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41299" g_stop="41151" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41150" i_stop="34116" i_length="7035">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34115" g_stop="33546" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="717" r_length="570" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E349726" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41299" e_stop="41151"/>
          <exon e_start="34115" e_stop="33546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCTTAAATCTACGTGTCGGTTCGTGACACCCGATCCCTTAATTCTACGTGTCGATTCGTGACACCCGATCCCCTAATACTACGTGTTGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTAATCTCCTTCTATCAATTTATCAAGCCTTCTTTCTTACCAAGGCATCATCAATCCCATTATTTTAGTTCATCATGCCTTCTTTACCAAGGCCTCATTATTAACAAAGAGATTAGGATTTTGCAAGATTTGGGATTCAATAACTTCATCACGCTTATATAATCACAATTATATAATTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTGCAATATTATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACCATAACCTACCTCCACCGATGATTAGAAATCAAGCAAGCGAATTTCCAAAGCTTTGTTCTTCTTCTCTCCCTGTTCGTTCGTTCAACTTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCATTTACCCTAATTAATATATAATTAAGTGTAAAAGATGACAATAATAACTCACAATTTAACTCAAGGTTACCTCTTTTATCCCCCAAGAAATTGAGTTATTAATATAAACCCACGAAATATATAATTATAGCAGGAATAGTCCAAAACGCCCCTTTAAAACTTAACCAGAAATCCGACTCCGACTGGGATTACGCATCCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCTGCTCCGTCACAGAGTTCAGAGACTGAAATTCTCTGAAGAGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCTATTCCGTTACGACGTTCAGAGAATCGTTCCCTGTACCAAATTCTCAAGAGTTGAAGTGTTTTGAAATGGTGGATCACGACGGTTCGTCGTTCCTGTGACGATCCGTCCTGCAGGTCCGTCACAGAGTTCAGAGAGTCGATTTCAGCACCCAAATTTCAGAATTTCTAAGTGTTTTGGGACGAGACACCCTCGAAGATCCGTCGTGCCCATGACGTTCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAGACGACTAAATAGGTCGTTACATTAGATACCAATTTACCAATCGTTCGTCCCCGAACGATCACAAGAAGGAGAATAAGGGCGAAAAGGAGTACTTGAATCTGTGAACAGGTGTGGATATCTTTCTCGCATATCAACCTCCTTCTCCCAAGTGGCTTCTTCAACGGGTCGATTCTTCCATTGAACTTTGATGGATGCAATCTCCCTTGATCTCAACTTGCGAATTTCTCTATCTAGAATAGCAACAGGCTTCTCCTCATAAGACAAATTCTCATCAAGCAAAACTGAATCCCAACGAATAATATAGTTTCCATCCCCATGGTATCTTTTCAACATCGACACATGGAATACCGGATGTACTCCGGACAGCCCTGGAGGCAAGGCTAACTCATAAGTCACCTCCCCTACTTGCTTAAGTACTTCAAAGGGACCAATGTACCTTGGACTTAGCTTACCCCTTTTACCAAACCGCATCACCCTTTTCATGGGCGAAACCTTCAGCAAGACTTGTTCATCCTCCATGAACTCTAAGTCTCTAACCTTTCGATCTGCATATTCTTTTTGCCTACTTTGCGCCGCTAGAAGCTTTTCTTGAATCGATTTCACTTTCTCTATCGAATCCCTCAAAAGATCAGTACCCCAAGATCTAACCTCGAATGCATCAAACCAACCAATGGGGGACCTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGCATGAAAATTCCACTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCATACATGCGCGAAGCATATCCTCCAACACTTGAATCGTTCTCTCAGACTGACCGTCGGTCTGAGGATGGAACACGGTACTAAGGTCCAACCTAGTACCCAATTTCACATGCAATGTTTTCCAAAACTTTGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAATCGAACGATTTCTGAGATATAGATCTTGGCTAACTTCTAGGCATTGTAAGTCACCTTAACCGGAATAAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATGGAGTCATACTTACCCAATGTCTTTGGAAGACCAACCACGAAGTCCATTGCGATTCTCTCCCATTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATATTACGCTTTATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGAGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATCTGTGCTTCCTTAGCCTCTCTTCGCAATACTTTACCTTGGATTCTGCGCAGTTTCTCATCATTAAATTGTCTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAACAATCCTCCCTTCTCATTTACTTCTAATCTCATCAAGTCGTTAGCTAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAGGCTTGCAAGTGAGCTAGACTTCCCATGCTTCCCGCCTTTCTACTTAAAGCATCCGCTACAACATTCGCCTTCCCCGGATGATACAAAATAGTGATGTCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAGTTCAGATCTTTTTGAGTAAAAACATATTGTAGGCTACGGTGATCCGTGTATACTTCACACTTAACCCCATATAAATAGTGTCTCCATTGCTTTAATGCAAACACTACCGCGGCCAATTCCAAATCATGAGTTGGATAGTTACGTTCATGCACCTTTAATTGTCTTGAAGCATAAGCAAACACATTCTTCTCTTGCATTAGCACTGCACCCAAACCCGAATAGGATACATCACAATAGACAATGAAATTCTTACCTTCCACTGGCAAGGTGAGAATTGGTGCAGTAGTCAACAGAGTCTTGAGCTTCTGAAAGCTTTCCTCACACTCATCCGACCATATAAATTGAATATTTTGCTTAGTCAAGTTCGTCAGTTGGGAAGCAATGGAAGAGAATCCCTTGACAAATCGACGGTAATAGCTAGCTAGACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATATGATCACAAAGAGATCCAAGTATGGCTTAAAAATTCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTTGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAATCAGTCTTCGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGAGGAAGAGGATACATGTTCTTTATGGTTACCTTGTTCAATTGCCGGTAGTCCATGCATATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCATTTGGTATAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCATGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATATGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAACATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCGACTATCACAGACTCACCCACCGTAGTAGAAACACGAATAGGTATATCAAGTAATTCGCAATGTAAATTTAGACCATTAGCAAATGCGGAAGATACATATGTAAATGTAGAGCCAGAGTCAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGATGTCTCCGCTTCTGACCGCCCAGGGAAAGCGTAACAATGGGCCCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCTCATCACCCCGTCCGTTTTGGTGACCACCATTACCTCGACCATCGCGTCCTCCAGAATGACGGCCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATGGGTCTCTCAGAAAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTATAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTACTCTAGAGTAAGAACCATTAAACTCACCTTCCTTTCGAAACCTTTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGTGGGATATACTTCTCCATAAACAAACCAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACGCTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGTTGATCATTTGTCATTATAGGCCCGGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTGGTACCTCTGGAGCCTGAGGTGCTGGTGTAGAAAACACTAGAGGCGTTTGACCTTGATCAGATAACCCACTAAGATAAGCAAGCACCTGATTTATCATCTCTGGGATAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTAGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTGTTCTTTCTCGAGCTACAGCCCCAGTGGCTGGCTCAGACGCACCCTGTCCCACCGGTGCTGGTGTTGGTGTTGGCGTAGTCGTTGCTCTAATTCTAACCATCTGCGAAATAAAGTGAAGATGGTCAGATACCAATTTGTATCACCTAGATACCAATTGGACCCAAGTAATAGCACGAAAGAAAGAAAGAAAGAATTGAATTTTCCTAAAGTCTTATAGCCTGTCAAAGAAAAGTAAAGGTGTCCCCCTACCGTTCCTTAAGACTCTACTAGACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACAAGGTTTGTCACGACCCAAAACCGGGCCGCGACTGGCACTCACACTTACCCTCCTATGTGAGCGAACCAACTAATCTAAACCTTAACATTTCAATATAATATCAACAGAAAGTAATGTGGAAGACTTAAACTCATTAATAAAATCAATAACTATTATTATCCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATGATCAAATTACTAAACTAAGAGTATTCTAAAAGCTAAAACAAGTAAAAGCTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGAGAAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAGATCCGATGTAGTGAAGACTGGCTAGAGTTACTGTTGAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAATTAAACAAGAAGAAAACATAAAAGCAGGGGTCAGTACAAAACACGGGTACTGAATAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTAATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCGTAATTCTACGTGTCGGTTCGTGACACTCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACATGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTAATCTCCTTCTATCAATTCATCAAGCCTTCTTTCTTACCAAGGCATCATCAATCCCATTATTTTAGTTCATCACACCTTCT---TTACCAAGGCCTCATTATTAACAAAGAGATTAGGATTTTGCAAGATTTGGGATTCAATAACTTCATCACGCTTATATAATCACAATTATATAATTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTGCAATATTATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACCATAACCTACCTCCACCGATGATTA</genome_strand>
        <mrna_strand>TTATGTTCATTAGATTGAGTATA-TAACATCTTTCAAGATTCATTGTCTTTATTTCTCTTGTGTCGGTACGTGACATTCCGCTCCNTC-ATATTCATTAATCTTCTTGTGTCGGTACGTGATACTCTGATCCCCTAAATCTACGTGTCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCTGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAT-CTATGTGTTGGTTCGTGACACCTGATCCCTTAAT-CTACGTGTCGGTTTGTGACACCCGATCCCCTAATTCTACGTGTCAGTTCGTGACACCCGATCCCCTAATCTCATTCTATCAATTCATCAAGCCTTCTCCCTTACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCCCTTACCAAGGCATCATCATTAA-AAAGAGATTAGGTTTTTACAAGATTTGGGATTCAATAACTTCATCATGCTTATATAATAACAATTATATAGTTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTACAATATTATCAATACATATCATTCTCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACAATAACCTACCTCCACCGAAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="34699" stop="33762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34399" g_stop="34062" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34399" e_stop="34062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAATAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTAATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="33772" stop="34610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34072" g_stop="34310" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34072" e_stop="34310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATTAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="33773" stop="34852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34073" g_stop="34552" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34073" e_stop="34552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATTAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTATTCAGTACCCGTGTTTTGTACTGACCCCTGCTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCACTACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="36247" stop="19238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35948" g_stop="35229" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35948" e_stop="35229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGTGGGATATACTTCTCCATAAACAAACCAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACGCTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGTTGATCATTTGTCATTATAGGCCCGGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTGGTACCTCTGGAGCCTGAGGTGCTGGTGTAGAAAACACTAGAGGCGTTTGACCTTGATCAGATAACCCACTAAGATAAGCAAGCACCTGATTTATCATCTCTGGGATAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTAGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="36245" stop="19289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35945" g_stop="35282" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35945" e_stop="35282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGTGGGATATACTTCTCCATAAACAAACCAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACGCTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGTTGATCATTTGTCATTATAGGCCCGGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTGGTACCTCTGGAGCCTGAGGTGCTGGTGTAGAAAACACTAGAGGCGTTTGACCTTGATCAGATAACCCACTAAGATAAGCAAGCACCTGATTTATCATCTCTGGGATAGGTTGGGGTGGCA-ATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353359" ref_strand="+" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>tgtagtctatgcacattcaaaaactgccgatctttacaacaaaaccggagcaccccaaggagatgcacttggtctaatgaagcctttgttcaataactcttgaagttgtgcctttaactctcttaactctgcgggagccattctataagggggtataaaaatggggcgtgtgcccggttcgagatcaatacagaagtcaatatccctatccggtggcataccaggatgatctgcagggaacacatccataaactcacgaactactgaaactgagtcaatcgaaggtacttgggtagtgttatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatacgcaccggattggaagtgtagtcaccctcctacactaacagatctgtcccaggcttggctaacgtcacggttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcgaagtcaaccatttcttgcaaggattttgccgtagccgctacctgtaacgctgaaatccgcaactctgacctcaaccctttcacaaaacgacgaatcctctcttgtggactgaaacaaagttgagtggcatatctggatagtgcacgaaacttagcctcatatgcattgacctacatcctaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="37548" stop="35552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37241" g_stop="36755" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="523" r_length="487" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36754" i_stop="36023" i_length="732">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36022" g_stop="35852" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="694" r_length="171" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37241" e_stop="36755"/>
          <exon e_start="36022" e_stop="35852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAAACCGGAGCACCCCAAGGAGATGCATTTGGTATAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCATGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATATGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAACATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCGACTATCACAGACTCACCCACCGTAGTAGAAACACGAATAGGTATATCAAGTAATTCGCAATGTAAATTTAGACCATTAGCAAATGCGGAAGATACATATGTAAATGTAGAGCCAGAGTCAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGATGTCTCCGCTTCTGACCGCCCAGGGAAAGCGTAACAATGGGCCCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCTCATCACCCCGTCCGTTTTGGTGACCACCATTACCTCGACCATCGCGTCCTCCAGAATGACGGCCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATGGGTCTCTCAGAAAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTATAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTACTCTAGAGTAAGAACCATTAAACTCACCTTCCTTTCGAAACCTTTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGC</genome_strand>
        <mrna_strand>CAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGTGTGCCCGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGATGATCTGCAGGGAACACATCCATAAACTCACGAACTACTGAAACTGAGTCAATCGAAGGTACTTGGGTAGTGTTATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCTACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACGGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGATTTTGCCGTAGCCGCTACCTGTAACGCTGAAATCCGCAACTCTGACCTCAACCCTTTCACAAAACGACGAATCCTCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCTACATCCTACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="37567" stop="36206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37267" g_stop="36506" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37267" e_stop="36506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCATTTGGTATAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCATGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATATGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAACATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCGACTATCACAGACTCACCCACCGTAGTAGAAACACGAATAGGTATATCAAGTAATTCGCAATGTAAATTTAGACCATTAGCAAATGCGGAAGATACATATGTAAATGTAGAGCCAGAGTCAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATCAACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="37567" stop="36307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37267" g_stop="36607" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37267" e_stop="36607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCATTTGGTATAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCATGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATATGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAACATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCGACTATCACAGACTCACCCACCGTAGTAGAAACACGAATAGGTATATCAAGTAATTCGCAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="37636" stop="36378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37336" g_stop="36678" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37336" e_stop="36678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACATGTTCTTTATGGTTACCTTGTTCAATTGCCGGTAGTCCATGCATATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCATTTGGTATAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCATGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATATGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAACATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCGACTATCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="38085" stop="36807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37785" g_stop="37106" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37785" e_stop="37106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATATGATCACAAAGAGATCCAAGTATGGCTTAAAAATTCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTTGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAATCAGTCTTCGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGAGGAAGAGGATACATGTTCTTTATGGTTACCTTGTTCAATTGCCGGTAGTCCATGCATATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCATTTGGTATAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="38156" stop="36844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37856" g_stop="37144" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37856" e_stop="37144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAGACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATATGATCACAAAGAGATCCAAGTATGGCTTAAAAATTCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTTGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAATCAGTCTTCGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGAGGAAGAGGATACATGTTCTTTATGGTTACCTTGTTCAATTGCCGGTAGTCCATGCATATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCATTTGGTATAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="38156" stop="36961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37856" g_stop="37261" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37856" e_stop="37261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAGACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATATGATCACAAAGAGATCCAAGTATGGCTTAAAAATTCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTTGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAATCAGTCTTCGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGAGGAAGAGGATACATGTTCTTTATGGTTACCTTGTTCAATTGCCGGTAGTCCATGCATATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="38156" stop="37031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37856" g_stop="37331" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37856" e_stop="37331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAGACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATATGATCACAAAGAGATCCAAGTATGGCTTAAAAATTCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTTGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAATCAGTCTTCGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="38085" stop="37127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37785" g_stop="37427" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37785" e_stop="37427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATATGATCACAAAGAGATCCAAGTATGGCTTAAAAATTCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTTGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAATCAGTCTTCGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="39637" stop="38860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39337" g_stop="39161" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39337" e_stop="39161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGCATGAAAATTCCACTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCATACATGCGCGAAGCATATCCTCCAACACTTGAATCGTTCTCTCAGACTGACCGTCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="40422" stop="41421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40722" g_stop="41122" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40722" e_stop="41122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCATCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGCAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCGTGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTAA---AGAAGGCATGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATAAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCAACACGTAGTATTAGGGGATCGGGTGTCACGAATCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="40843" stop="41681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41143" g_stop="41381" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41143" e_stop="41381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAAGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699867" ref_strand="+" ref_description="SGN-E699867 [FA11BG05]">
      <seq>agctaatcggtgagtgtttcttattaaagtacacataagaaaatttcaattaatttattagcaatgtctttgtcaggcttagttttgaaaaatatctataaaaaatcgaatgcaagtgtgaggcatttgagtaataatgtgcagaaacagggctggtgctctgaacttgtacgtcgtttttctacagagtctgagaaacaacaagtagatggcagtggaaaatcggagaaacaagaagtagctgtttccgacagtggcaaacaatcgaagctatttcaaagaagacgccgccgtggtaatctttggagacgcaatgaatacgactttgcacctgctcttgtcgaaaacttaccaacgggacttggcaatgcattattgcaagccacacagaacatcaacaagatatttgataatttcaacttgaatccctcacaattactgggaaggtacaaagaggatgataagaattacaaaatccgttacgacgtgccaggactcggcaagaaggacgtgaagatcatggttgaggatggaattttgacaataaaaggtgaacacaaacaagagaaggaagaagaaggatcagatgatgagttttggtcatcaacaagttatggttactataataatagcattgtgttgcctcaagatgctaaggttgatgaaattaaagctgagatgaaagatggtgttttgacaattactattcctaaaagtgacaaacctaagaaagatgttaaggaaattgaagttttgtgaggtttttctttggcagtattacctctgacatgtttgtgagtgtcttcataataataatttaagttttcttcagtttcaagagggtgtgacaagaatggctttgctttattcgaaaaaattggccataatttttggccaaaatttgtttcaaataaaatctatccgtttggttattttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="46038" stop="43093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45738" g_stop="45396" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45395" i_stop="43995" i_length="1401">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43994" g_stop="43399" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="940" r_length="597" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="941" polyA_stop="952"/>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E699867" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>939</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45738" e_stop="45396"/>
          <exon e_start="43994" e_stop="43399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTAATCGGTGAGTGTTTCTTATTAAAGTACACATAAGAAAATTTCAATTAATTTATTAGCAATGTCTTTGTCAGGCTTAGTTTTGAAAAATATCTATAAAAAATCGAATGCAAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCGGTATGATTTCCCCTTTCTATTTAGTAGTCTTAATGAAATGATTTAGAATTTATTATTATTTTTAAAGCTAAATTAATTTATATATTAAAATGGAGAGAGTATTATCTTTTGCAATTTTCAATTATTAAGAATATTTTTTTTAGGCATAATACATACATACATGTTAACCCTTTATCATGACACTTTCGTGTCAGCTAGTAACTATGACTTTTAATTTTAAATGTGTATAAATAGTATATTTAATTGTTTAAAATTGAATAAATAGATATTTTTATCATACATACGTAATTTTGTGTTCTACTTAATTACTCAAGTTTAAGTGTTTACTTGTGCACGCTCAAAATTGAAATTTATAGTTTATCCCTCGAAACTAAGGGTGTGTTTGGTATGTAGGAAAATGTTTTTCTGAAAAATAAGTAGATTTTGAACTTATTTTTTCATGTTTGGTTGGTGAGTAGAAAATATTTTTCGAAAATAATTTTTAGTTTTTCATTTATGAATGAAAAATATTTTTGAGGAACATCTTTTATTTCTACTAGAGTAGAAAACAATTTATGGAATTGAAAATATTTTTTAAAAATAATTTTTTTTGGAGTGGTGGTGGTGGGGCAGGGGAGGGGAGGGGAGGAGAGGGGTGAAAAAATAAAAATTTGAAGTTGATAGTATTTTTTTAAAAAAAATTAATTTTTTTTGGGGTTGGGCGGGGATGGGGCTGGTAGGGGTAGGTAGGGGGCTGGCCATGGGAGAGGCAGAAGTTCAAAAATAAAAATTTAAAAATGAAAATATTCTTAAAAAGCAAAATTAATTTTTTTGGGAGGGGTTGGGGTGGGAGAGGTGGGTTTGGGGAGGGTTGTCAGGAATCGGGTAAAAAAATAAAATTTTGAAATTAATTTTTTTAAAATAAAAAATTGATGTTTTTTCAATAAAAAATGTAATTTGAAATTGGAAGAGAACTTTGAAAAATATTTTTCTTAATTTTTTAAGGGAAGACATTTCTTTAATTTTGAGGAAAATGAGTTGATTTTGTAAAATTTTTGCCCAACCAAATATGAGAAAATTGAAAAACATTTTTTAGAAATGTTTTCCTCATACCAAACACACTCTAAGTTAAGAGTGTATTATGTCTTCTTATTTACTTAATTTCCGTCTTTCAACATTTTATTTTATCCACCAAACAATTTAGTTTTCATAAAGATGATTCAATTTTACTAGTTTAACTTTTTACTTTGGCTTTAAGCCATGTACATGTATGGAGGTGTCAGGATTTTCAACAAAAATTTTCAAAATTTGAAGAAATAGACACAGTCTAACGAAGTTTGATATATATATATATATTTATATTATACATATTATTTTAATTATATAAAAATAATGTAGTATTTGTTTCTTTTTTTGGAACAGAAAACTTACCAACGGGACTTGGCAATGCATTATTGCAAGCCACACAGAACATCAACAAGATATTTGATAATTTCAACTTGAATCCCTCACAATTACTGGGAAGGTACAAAGAGGATGATAAGAATTACAAAATCCGTTACGACGTGCCAGGACTCGGCAAGAAGGACGTGAAGATCATGGTTGAGGATGGAATTTTGACAATAAAAGGTGAACACAAACAAGAGAAGGAAGAAGAAGGATCAGATGATGAGTTTTGGTCATCAACAAGTTATGGTTACTATAATAATAGCATTGTGTTGCCTCAAGATGCTAAGGTTGATGAAATTAAAGCTGAGATGAAAGATGGTGTTTTGACAATTACTATTCCTAAAAGTGACAAACCTAAGAAAGATGTTAAGGAAATTGAAGTTTTGTGAGGTTTTTCTTTGGCAGTATTACCTCTGACATGTTTGTGAGTGTCTTCATAATAATAATTTAAGTTTTCTTCAGTTTCAAGAGGGTGTGACAAGAATGGCTTTGCTTTATTCGAAAAAATTGGCCATAA-TTTTGGCCAAGAATTGTTTCAAAATAAAATCTAT-CGTTTTGTTATTTTATAA</genome_strand>
        <mrna_strand>AGCTAATCGGTGAGTGTTTCTTATTAAAGTACACATAAGAAAATTTCAATTAATTTATTAGCAATGTCTTTGTCAGGCTTAGTTTTGAAAAATATCTATAAAAAATCGAATGCAAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTACCAACGGGACTTGGCAATGCATTATTGCAAGCCACACAGAACATCAACAAGATATTTGATAATTTCAACTTGAATCCCTCACAATTACTGGGAAGGTACAAAGAGGATGATAAGAATTACAAAATCCGTTACGACGTGCCAGGACTCGGCAAGAAGGACGTGAAGATCATGGTTGAGGATGGAATTTTGACAATAAAAGGTGAACACAAACAAGAGAAGGAAGAAGAAGGATCAGATGATGAGTTTTGGTCATCAACAAGTTATGGTTACTATAATAATAGCATTGTGTTGCCTCAAGATGCTAAGGTTGATGAAATTAAAGCTGAGATGAAAGATGGTGTTTTGACAATTACTATTCCTAAAAGTGACAAACCTAAGAAAGATGTTAAGGAAATTGAAGTTTTGTGAGGTTTTTCTTTGGCAGTATTACCTCTGACATGTTTGTGAGTGTCTTCATAATAATAATTTAAGTTTTCTTCAGTTTCAAGAGGGTGTGACAAGAATGGCTTTGCTTTATTCGAAAAAATTGGCCATAATTTTTGGCCAAAATTTGTTTC-AAATAAAATCTATCCGTTTGGTTATTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716595" ref_strand="+" ref_description="SGN-E716595 [FB17CA08]">
      <seq>catagaaatcagaaaagctaatcggtgagtgtttcttattaaagtacacataagaaaatttccattaatttattagcaatgtctttgtcaggcttagttttgaaaaatatctataaaaaatcgaatgcaagtgtgaggcatttgagtaataatgtgcagaaacagggctggtgctctgaacttgtacgtcgtttttctacagagtctgagaaacaacaagtagatggcagtggaaaatcggagaaacaagaagtagctgtttccgatagtggcaaacaatcgaagctatttcaaagaagacgccgccgtggtaatctttggagacgcaatgaatacgactttgcacctgctcttgtcgaaaacttaccaacgggacttggcaatgcattattgcaagccacagagaacatcaacaagatatttgataatttcaacttgaatccctcacaattactgggaaggtacaaagaggatgataagaattacaaaatccgttacgacttgccaggactcggcaagaaggacgtgaagatcatggttgaggatggaattttgacaataaaaggtgaacacaaacaagagaaggaagaagaaggatcagatgatgagttttggtcatcaacaagttatggttactataataatagcattgtgttgcctcaagatgctaaggttgatgaaattaaagctgagatgaaagatggtgttttgacaattactattcctaaaagtgacaaacctaagaaagatgttaaggaaattgaagttatgtgaggtttttctttggtagtattacctctgacatgtttgtgagtgtcttcataataataatttaagttttcttcagtttcaagagggtgtgacaagaatggctttgctttattcgaaaaaaatggccataatttttggccaagaattgtttcaaaataaaatctatcgttttgttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="46053" stop="43103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45753" g_stop="45396" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45395" i_stop="43995" i_length="1401">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43994" g_stop="43403" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="951" r_length="593" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E716595" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>950</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45753" e_stop="45396"/>
          <exon e_start="43994" e_stop="43403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGAAATCAGAAAAGCTAATCGGTGAGTGTTTCTTATTAAAGTACACATAAGAAAATTTCAATTAATTTATTAGCAATGTCTTTGTCAGGCTTAGTTTTGAAAAATATCTATAAAAAATCGAATGCAAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCGGTATGATTTCCCCTTTCTATTTAGTAGTCTTAATGAAATGATTTAGAATTTATTATTATTTTTAAAGCTAAATTAATTTATATATTAAAATGGAGAGAGTATTATCTTTTGCAATTTTCAATTATTAAGAATATTTTTTTTAGGCATAATACATACATACATGTTAACCCTTTATCATGACACTTTCGTGTCAGCTAGTAACTATGACTTTTAATTTTAAATGTGTATAAATAGTATATTTAATTGTTTAAAATTGAATAAATAGATATTTTTATCATACATACGTAATTTTGTGTTCTACTTAATTACTCAAGTTTAAGTGTTTACTTGTGCACGCTCAAAATTGAAATTTATAGTTTATCCCTCGAAACTAAGGGTGTGTTTGGTATGTAGGAAAATGTTTTTCTGAAAAATAAGTAGATTTTGAACTTATTTTTTCATGTTTGGTTGGTGAGTAGAAAATATTTTTCGAAAATAATTTTTAGTTTTTCATTTATGAATGAAAAATATTTTTGAGGAACATCTTTTATTTCTACTAGAGTAGAAAACAATTTATGGAATTGAAAATATTTTTTAAAAATAATTTTTTTTGGAGTGGTGGTGGTGGGGCAGGGGAGGGGAGGGGAGGAGAGGGGTGAAAAAATAAAAATTTGAAGTTGATAGTATTTTTTTAAAAAAAATTAATTTTTTTTGGGGTTGGGCGGGGATGGGGCTGGTAGGGGTAGGTAGGGGGCTGGCCATGGGAGAGGCAGAAGTTCAAAAATAAAAATTTAAAAATGAAAATATTCTTAAAAAGCAAAATTAATTTTTTTGGGAGGGGTTGGGGTGGGAGAGGTGGGTTTGGGGAGGGTTGTCAGGAATCGGGTAAAAAAATAAAATTTTGAAATTAATTTTTTTAAAATAAAAAATTGATGTTTTTTCAATAAAAAATGTAATTTGAAATTGGAAGAGAACTTTGAAAAATATTTTTCTTAATTTTTTAAGGGAAGACATTTCTTTAATTTTGAGGAAAATGAGTTGATTTTGTAAAATTTTTGCCCAACCAAATATGAGAAAATTGAAAAACATTTTTTAGAAATGTTTTCCTCATACCAAACACACTCTAAGTTAAGAGTGTATTATGTCTTCTTATTTACTTAATTTCCGTCTTTCAACATTTTATTTTATCCACCAAACAATTTAGTTTTCATAAAGATGATTCAATTTTACTAGTTTAACTTTTTACTTTGGCTTTAAGCCATGTACATGTATGGAGGTGTCAGGATTTTCAACAAAAATTTTCAAAATTTGAAGAAATAGACACAGTCTAACGAAGTTTGATATATATATATATATTTATATTATACATATTATTTTAATTATATAAAAATAATGTAGTATTTGTTTCTTTTTTTGGAACAGAAAACTTACCAACGGGACTTGGCAATGCATTATTGCAAGCCACACAGAACATCAACAAGATATTTGATAATTTCAACTTGAATCCCTCACAATTACTGGGAAGGTACAAAGAGGATGATAAGAATTACAAAATCCGTTACGACGTGCCAGGACTCGGCAAGAAGGACGTGAAGATCATGGTTGAGGATGGAATTTTGACAATAAAAGGTGAACACAAACAAGAGAAGGAAGAAGAAGGATCAGATGATGAGTTTTGGTCATCAACAAGTTATGGTTACTATAATAATAGCATTGTGTTGCCTCAAGATGCTAAGGTTGATGAAATTAAAGCTGAGATGAAAGATGGTGTTTTGACAATTACTATTCCTAAAAGTGACAAACCTAAGAAAGATGTTAAGGAAATTGAAGTTTTGTGAGGTTTTTCTTTGGCAGTATTACCTCTGACATGTTTGTGAGTGTCTTCATAATAATAATTTAAGTTTTCTTCAGTTTCAAGAGGGTGTGACAAGAATGGCTTTGCTTTATTCGAAAAAATTGGCCATAA-TTTTGGCCAAGAATTGTTTCAAAATAAAATCTATCGTTTTGTTATTTT</genome_strand>
        <mrna_strand>CATAGAAATCAGAAAAGCTAATCGGTGAGTGTTTCTTATTAAAGTACACATAAGAAAATTTCCATTAATTTATTAGCAATGTCTTTGTCAGGCTTAGTTTTGAAAAATATCTATAAAAAATCGAATGCAAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGATAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTACCAACGGGACTTGGCAATGCATTATTGCAAGCCACAGAGAACATCAACAAGATATTTGATAATTTCAACTTGAATCCCTCACAATTACTGGGAAGGTACAAAGAGGATGATAAGAATTACAAAATCCGTTACGACTTGCCAGGACTCGGCAAGAAGGACGTGAAGATCATGGTTGAGGATGGAATTTTGACAATAAAAGGTGAACACAAACAAGAGAAGGAAGAAGAAGGATCAGATGATGAGTTTTGGTCATCAACAAGTTATGGTTACTATAATAATAGCATTGTGTTGCCTCAAGATGCTAAGGTTGATGAAATTAAAGCTGAGATGAAAGATGGTGTTTTGACAATTACTATTCCTAAAAGTGACAAACCTAAGAAAGATGTTAAGGAAATTGAAGTTATGTGAGGTTTTTCTTTGGTAGTATTACCTCTGACATGTTTGTGAGTGTCTTCATAATAATAATTTAAGTTTTCTTCAGTTTCAAGAGGGTGTGACAAGAATGGCTTTGCTTTATTCGAAAAAAATGGCCATAATTTTTGGCCAAGAATTGTTTCAAAATAAAATCTATCGTTTTGTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705267" ref_strand="+" ref_description="SGN-E705267 [FA26CE09]">
      <seq>attccttctcatcatagaaatcagaaaagctaatcggtgagtgtttcttattaaagtacacataagaaaatttcaattaatttattagcaatgtctttgtcaggcttagttttgaaaaatatctataaaaaatcgaatgcaagtgtgaggcatttgagtaataatgtgcagaaacagggctggtgctctgaacttgtacgtcgtttttctacagagtctgagaaacaacaagtagatggcagtggaaaatcggagaaacaagaagtagctgtttccgacagtggcaaacaatcgaagctatttcaaagaagacgccgccgtggtaatctttggagacgcaatgaatacgactttgcacctgctcttgtcgaaaacttaccaacgggacttggcaatgcattattgcaagccacacagaacatcaacaagatatttgataatttcaacttgaatccctcacaattactgggaaggtacaaagaggatgataagaattacaaaatccgttacgacgtgccaggactcggcaagaaggacgtgaagatcatggttgaggatggaattttgacaataaaaggtgaacacaaacaagagaaggaagaagaaggatcagatgatgagttttggtcatcaacaagttatggttactataataatagcattgtgttgcctcaagatgctaaggttgatgatattaaagctgagatgaaagatggtgttttgacaattactattcctagcagtgacaaacctaagagagatgttaaggaaattgaagttttgtgagggttttctttggcagtattacctctgacatgtttgtgagtgtcttcataataatatttaagttttcttcagtttcagcagggtgtgacaagaatggctttgctttattcaaaaaaatggccataattttgggccaggaatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="46065" stop="43132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45765" g_stop="45396" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45395" i_stop="43995" i_length="1401">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43994" g_stop="43446" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="917" r_length="547" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E705267" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>919</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45765" e_stop="45396"/>
          <exon e_start="43994" e_stop="43446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTTCTCATCATAGAAATCAGAAAAGCTAATCGGTGAGTGTTTCTTATTAAAGTACACATAAGAAAATTTCAATTAATTTATTAGCAATGTCTTTGTCAGGCTTAGTTTTGAAAAATATCTATAAAAAATCGAATGCAAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCGGTATGATTTCCCCTTTCTATTTAGTAGTCTTAATGAAATGATTTAGAATTTATTATTATTTTTAAAGCTAAATTAATTTATATATTAAAATGGAGAGAGTATTATCTTTTGCAATTTTCAATTATTAAGAATATTTTTTTTAGGCATAATACATACATACATGTTAACCCTTTATCATGACACTTTCGTGTCAGCTAGTAACTATGACTTTTAATTTTAAATGTGTATAAATAGTATATTTAATTGTTTAAAATTGAATAAATAGATATTTTTATCATACATACGTAATTTTGTGTTCTACTTAATTACTCAAGTTTAAGTGTTTACTTGTGCACGCTCAAAATTGAAATTTATAGTTTATCCCTCGAAACTAAGGGTGTGTTTGGTATGTAGGAAAATGTTTTTCTGAAAAATAAGTAGATTTTGAACTTATTTTTTCATGTTTGGTTGGTGAGTAGAAAATATTTTTCGAAAATAATTTTTAGTTTTTCATTTATGAATGAAAAATATTTTTGAGGAACATCTTTTATTTCTACTAGAGTAGAAAACAATTTATGGAATTGAAAATATTTTTTAAAAATAATTTTTTTTGGAGTGGTGGTGGTGGGGCAGGGGAGGGGAGGGGAGGAGAGGGGTGAAAAAATAAAAATTTGAAGTTGATAGTATTTTTTTAAAAAAAATTAATTTTTTTTGGGGTTGGGCGGGGATGGGGCTGGTAGGGGTAGGTAGGGGGCTGGCCATGGGAGAGGCAGAAGTTCAAAAATAAAAATTTAAAAATGAAAATATTCTTAAAAAGCAAAATTAATTTTTTTGGGAGGGGTTGGGGTGGGAGAGGTGGGTTTGGGGAGGGTTGTCAGGAATCGGGTAAAAAAATAAAATTTTGAAATTAATTTTTTTAAAATAAAAAATTGATGTTTTTTCAATAAAAAATGTAATTTGAAATTGGAAGAGAACTTTGAAAAATATTTTTCTTAATTTTTTAAGGGAAGACATTTCTTTAATTTTGAGGAAAATGAGTTGATTTTGTAAAATTTTTGCCCAACCAAATATGAGAAAATTGAAAAACATTTTTTAGAAATGTTTTCCTCATACCAAACACACTCTAAGTTAAGAGTGTATTATGTCTTCTTATTTACTTAATTTCCGTCTTTCAACATTTTATTTTATCCACCAAACAATTTAGTTTTCATAAAGATGATTCAATTTTACTAGTTTAACTTTTTACTTTGGCTTTAAGCCATGTACATGTATGGAGGTGTCAGGATTTTCAACAAAAATTTTCAAAATTTGAAGAAATAGACACAGTCTAACGAAGTTTGATATATATATATATATTTATATTATACATATTATTTTAATTATATAAAAATAATGTAGTATTTGTTTCTTTTTTTGGAACAGAAAACTTACCAACGGGACTTGGCAATGCATTATTGCAAGCCACACAGAACATCAACAAGATATTTGATAATTTCAACTTGAATCCCTCACAATTACTGGGAAGGTACAAAGAGGATGATAAGAATTACAAAATCCGTTACGACGTGCCAGGACTCGGCAAGAAGGACGTGAAGATCATGGTTGAGGATGGAATTTTGACAATAAAAGGTGAACACAAACAAGAGAAGGAAGAAGAAGGATCAGATGATGAGTTTTGGTCATCAACAAGTTATGGTTACTATAATAATAGCATTGTGTTGCCTCAAGATGCTAAGGTTGATGAAATTAAAGCTGAGATGAAAGATGGTGTTTTGACAATTACTATTCCTAAAAGTGACAAACCTAAGAAAGATGTTAAGGAAATTGAAGTTTTGTGAGGTTTTTCTTTGGCAGTATTACCTCTGACATGTTTGTGAGTGTCTTCATAATAATAATTTAAGTTTTCTTCAGTTTCAAGAGGGTGTGACAAGAATGGCTTTGCTTTATTCGAAAAAATTGGCCATAATTTTG</genome_strand>
        <mrna_strand>ATTCCTTCTCATCATAGAAATCAGAAAAGCTAATCGGTGAGTGTTTCTTATTAAAGTACACATAAGAAAATTTCAATTAATTTATTAGCAATGTCTTTGTCAGGCTTAGTTTTGAAAAATATCTATAAAAAATCGAATGCAAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTACCAACGGGACTTGGCAATGCATTATTGCAAGCCACACAGAACATCAACAAGATATTTGATAATTTCAACTTGAATCCCTCACAATTACTGGGAAGGTACAAAGAGGATGATAAGAATTACAAAATCCGTTACGACGTGCCAGGACTCGGCAAGAAGGACGTGAAGATCATGGTTGAGGATGGAATTTTGACAATAAAAGGTGAACACAAACAAGAGAAGGAAGAAGAAGGATCAGATGATGAGTTTTGGTCATCAACAAGTTATGGTTACTATAATAATAGCATTGTGTTGCCTCAAGATGCTAAGGTTGATGATATTAAAGCTGAGATGAAAGATGGTGTTTTGACAATTACTATTCCTAGCAGTGACAAACCTAAGAGAGATGTTAAGGAAATTGAAGTTTTGTGAGGGTTTTCTTTGGCAGTATTACCTCTGACATGTTTGTGAGTGTCTTCATAATAAT-ATTTAAGTTTTCTTCAGTTTCAGCAGGGTGTGACAAGAATGGCTTTGCTTTATTC-AAAAAAATGGCCATAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260600" ref_strand="+" ref_description="SGN-E260600 [cLEG-54-L18]">
      <seq>tggtgctctgaacttgtacgtcgtttttctacagagtctgagaaacaacaagtagatggcagtggaaaatcggagaaacaagaagtagctgtttccgacagtggcaaacaatcgaagctatttcaaagaagacgccgccgtggtaatctttggagacgcaatgaatacgactttgcacctgctcttgtcgaaaacttaccaacgggacttggcaatgcattattgcaagccacacagaacatcaacaagatatttgataatttcaacttgaatccctcacaattactgggaaggtacaaagaggatgataagaattacaaaatccgttacgacgtgccaggactcggcaagaaggacgtgaagatcatggttgaggatggaattttgacaataaaaggtgaacacaaacaagagaaggaagaagaaggatcagatgatgagttttggtcatcaacaagttatggttactataataatagcattgtgttgcctcaagatgctaaggttgatgaaattaaagctgagatgaaagatggtgttttgacaattactattcctaaaagtgacaaacctaagaaagatgttaaggaaattgaagttttgtgaggtttttctttggcagtattacctctgacatgtttgtgagtgtcttcataataataatttaagttttcttcagtttcaagagggtgtgacaagaatggctttgctttattcaaaaaattggccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="45885" stop="43152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45585" g_stop="45396" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45395" i_stop="43995" i_length="1401">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43994" g_stop="43452" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="732" r_length="542" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E260600" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45585" e_stop="45396"/>
          <exon e_start="43994" e_stop="43452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCGGTATGATTTCCCCTTTCTATTTAGTAGTCTTAATGAAATGATTTAGAATTTATTATTATTTTTAAAGCTAAATTAATTTATATATTAAAATGGAGAGAGTATTATCTTTTGCAATTTTCAATTATTAAGAATATTTTTTTTAGGCATAATACATACATACATGTTAACCCTTTATCATGACACTTTCGTGTCAGCTAGTAACTATGACTTTTAATTTTAAATGTGTATAAATAGTATATTTAATTGTTTAAAATTGAATAAATAGATATTTTTATCATACATACGTAATTTTGTGTTCTACTTAATTACTCAAGTTTAAGTGTTTACTTGTGCACGCTCAAAATTGAAATTTATAGTTTATCCCTCGAAACTAAGGGTGTGTTTGGTATGTAGGAAAATGTTTTTCTGAAAAATAAGTAGATTTTGAACTTATTTTTTCATGTTTGGTTGGTGAGTAGAAAATATTTTTCGAAAATAATTTTTAGTTTTTCATTTATGAATGAAAAATATTTTTGAGGAACATCTTTTATTTCTACTAGAGTAGAAAACAATTTATGGAATTGAAAATATTTTTTAAAAATAATTTTTTTTGGAGTGGTGGTGGTGGGGCAGGGGAGGGGAGGGGAGGAGAGGGGTGAAAAAATAAAAATTTGAAGTTGATAGTATTTTTTTAAAAAAAATTAATTTTTTTTGGGGTTGGGCGGGGATGGGGCTGGTAGGGGTAGGTAGGGGGCTGGCCATGGGAGAGGCAGAAGTTCAAAAATAAAAATTTAAAAATGAAAATATTCTTAAAAAGCAAAATTAATTTTTTTGGGAGGGGTTGGGGTGGGAGAGGTGGGTTTGGGGAGGGTTGTCAGGAATCGGGTAAAAAAATAAAATTTTGAAATTAATTTTTTTAAAATAAAAAATTGATGTTTTTTCAATAAAAAATGTAATTTGAAATTGGAAGAGAACTTTGAAAAATATTTTTCTTAATTTTTTAAGGGAAGACATTTCTTTAATTTTGAGGAAAATGAGTTGATTTTGTAAAATTTTTGCCCAACCAAATATGAGAAAATTGAAAAACATTTTTTAGAAATGTTTTCCTCATACCAAACACACTCTAAGTTAAGAGTGTATTATGTCTTCTTATTTACTTAATTTCCGTCTTTCAACATTTTATTTTATCCACCAAACAATTTAGTTTTCATAAAGATGATTCAATTTTACTAGTTTAACTTTTTACTTTGGCTTTAAGCCATGTACATGTATGGAGGTGTCAGGATTTTCAACAAAAATTTTCAAAATTTGAAGAAATAGACACAGTCTAACGAAGTTTGATATATATATATATATTTATATTATACATATTATTTTAATTATATAAAAATAATGTAGTATTTGTTTCTTTTTTTGGAACAGAAAACTTACCAACGGGACTTGGCAATGCATTATTGCAAGCCACACAGAACATCAACAAGATATTTGATAATTTCAACTTGAATCCCTCACAATTACTGGGAAGGTACAAAGAGGATGATAAGAATTACAAAATCCGTTACGACGTGCCAGGACTCGGCAAGAAGGACGTGAAGATCATGGTTGAGGATGGAATTTTGACAATAAAAGGTGAACACAAACAAGAGAAGGAAGAAGAAGGATCAGATGATGAGTTTTGGTCATCAACAAGTTATGGTTACTATAATAATAGCATTGTGTTGCCTCAAGATGCTAAGGTTGATGAAATTAAAGCTGAGATGAAAGATGGTGTTTTGACAATTACTATTCCTAAAAGTGACAAACCTAAGAAAGATGTTAAGGAAATTGAAGTTTTGTGAGGTTTTTCTTTGGCAGTATTACCTCTGACATGTTTGTGAGTGTCTTCATAATAATAATTTAAGTTTTCTTCAGTTTCAAGAGGGTGTGACAAGAATGGCTTTGCTTTATTCGAAAAAATTGGCCATA</genome_strand>
        <mrna_strand>TGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTACCAACGGGACTTGGCAATGCATTATTGCAAGCCACACAGAACATCAACAAGATATTTGATAATTTCAACTTGAATCCCTCACAATTACTGGGAAGGTACAAAGAGGATGATAAGAATTACAAAATCCGTTACGACGTGCCAGGACTCGGCAAGAAGGACGTGAAGATCATGGTTGAGGATGGAATTTTGACAATAAAAGGTGAACACAAACAAGAGAAGGAAGAAGAAGGATCAGATGATGAGTTTTGGTCATCAACAAGTTATGGTTACTATAATAATAGCATTGTGTTGCCTCAAGATGCTAAGGTTGATGAAATTAAAGCTGAGATGAAAGATGGTGTTTTGACAATTACTATTCCTAAAAGTGACAAACCTAAGAAAGATGTTAAGGAAATTGAAGTTTTGTGAGGTTTTTCTTTGGCAGTATTACCTCTGACATGTTTGTGAGTGTCTTCATAATAATAATTTAAGTTTTCTTCAGTTTCAAGAGGGTGTGACAAGAATGGCTTTGCTTTATTC-AAAAAATTGGCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713881" ref_strand="+" ref_description="SGN-E713881 [FB09DF12]">
      <seq>cgcttctcatcatagaaatcagaaaagctaatcggtgagtgtttcttattaaagtacacataagaaaatttcaattaatttattagcaatgtctttgtcaggcttagttttgaaaaatatctataaaaaatcgaatgcaagtgtgaggcatttgagtaataatgtgcagaaacagggctggtgctctgaacttgtacgtcgtttttctacagagtctgagaaacaacaagtagatggcagtggaaaatcggagaaacaagaagtagctgtttccgacagtggcaaacaatcgaagctatttcaaagaagacgccgccgtggtaatctttggagacgcaatgaatacgactttgcacctgctcttgtcgaaaacttaccaacgggacttggcaatgcattattgcaagccacacagaacatcaacaagatatttgataatttcaacttgaatccctcacaattactgggaaggtacaaagaggatgataagaattacaaaatccgttacgacgtgccaggactcggcaagaaggacgtgaagatcatggttgaggatggaattttgacaataaaaggtgaacacaaacaagagaaggaagaagaaggatcagatgatgagttttggtcatcaacaagttatggttactataataatagcattgtgttgcctcaagatgctaaggttgatgaaattaaagctgagatgaaagatggtgttttgacaattactattcctaaaagtgacaaacctaagaaagatgttaaggaaattgaagttttgtgaggtttttctttggcagtattacctctgacatgtttgtgagtgtcttcataataataatttaggttttcttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="46061" stop="43207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45763" g_stop="45396" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45395" i_stop="43995" i_length="1401">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43994" g_stop="43497" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="866" r_length="498" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E713881" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45763" e_stop="45396"/>
          <exon e_start="43994" e_stop="43497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCTCATCATAGAAATCAGAAAAGCTAATCGGTGAGTGTTTCTTATTAAAGTACACATAAGAAAATTTCAATTAATTTATTAGCAATGTCTTTGTCAGGCTTAGTTTTGAAAAATATCTATAAAAAATCGAATGCAAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCGGTATGATTTCCCCTTTCTATTTAGTAGTCTTAATGAAATGATTTAGAATTTATTATTATTTTTAAAGCTAAATTAATTTATATATTAAAATGGAGAGAGTATTATCTTTTGCAATTTTCAATTATTAAGAATATTTTTTTTAGGCATAATACATACATACATGTTAACCCTTTATCATGACACTTTCGTGTCAGCTAGTAACTATGACTTTTAATTTTAAATGTGTATAAATAGTATATTTAATTGTTTAAAATTGAATAAATAGATATTTTTATCATACATACGTAATTTTGTGTTCTACTTAATTACTCAAGTTTAAGTGTTTACTTGTGCACGCTCAAAATTGAAATTTATAGTTTATCCCTCGAAACTAAGGGTGTGTTTGGTATGTAGGAAAATGTTTTTCTGAAAAATAAGTAGATTTTGAACTTATTTTTTCATGTTTGGTTGGTGAGTAGAAAATATTTTTCGAAAATAATTTTTAGTTTTTCATTTATGAATGAAAAATATTTTTGAGGAACATCTTTTATTTCTACTAGAGTAGAAAACAATTTATGGAATTGAAAATATTTTTTAAAAATAATTTTTTTTGGAGTGGTGGTGGTGGGGCAGGGGAGGGGAGGGGAGGAGAGGGGTGAAAAAATAAAAATTTGAAGTTGATAGTATTTTTTTAAAAAAAATTAATTTTTTTTGGGGTTGGGCGGGGATGGGGCTGGTAGGGGTAGGTAGGGGGCTGGCCATGGGAGAGGCAGAAGTTCAAAAATAAAAATTTAAAAATGAAAATATTCTTAAAAAGCAAAATTAATTTTTTTGGGAGGGGTTGGGGTGGGAGAGGTGGGTTTGGGGAGGGTTGTCAGGAATCGGGTAAAAAAATAAAATTTTGAAATTAATTTTTTTAAAATAAAAAATTGATGTTTTTTCAATAAAAAATGTAATTTGAAATTGGAAGAGAACTTTGAAAAATATTTTTCTTAATTTTTTAAGGGAAGACATTTCTTTAATTTTGAGGAAAATGAGTTGATTTTGTAAAATTTTTGCCCAACCAAATATGAGAAAATTGAAAAACATTTTTTAGAAATGTTTTCCTCATACCAAACACACTCTAAGTTAAGAGTGTATTATGTCTTCTTATTTACTTAATTTCCGTCTTTCAACATTTTATTTTATCCACCAAACAATTTAGTTTTCATAAAGATGATTCAATTTTACTAGTTTAACTTTTTACTTTGGCTTTAAGCCATGTACATGTATGGAGGTGTCAGGATTTTCAACAAAAATTTTCAAAATTTGAAGAAATAGACACAGTCTAACGAAGTTTGATATATATATATATATTTATATTATACATATTATTTTAATTATATAAAAATAATGTAGTATTTGTTTCTTTTTTTGGAACAGAAAACTTACCAACGGGACTTGGCAATGCATTATTGCAAGCCACACAGAACATCAACAAGATATTTGATAATTTCAACTTGAATCCCTCACAATTACTGGGAAGGTACAAAGAGGATGATAAGAATTACAAAATCCGTTACGACGTGCCAGGACTCGGCAAGAAGGACGTGAAGATCATGGTTGAGGATGGAATTTTGACAATAAAAGGTGAACACAAACAAGAGAAGGAAGAAGAAGGATCAGATGATGAGTTTTGGTCATCAACAAGTTATGGTTACTATAATAATAGCATTGTGTTGCCTCAAGATGCTAAGGTTGATGAAATTAAAGCTGAGATGAAAGATGGTGTTTTGACAATTACTATTCCTAAAAGTGACAAACCTAAGAAAGATGTTAAGGAAATTGAAGTTTTGTGAGGTTTTTCTTTGGCAGTATTACCTCTGACATGTTTGTGAGTGTCTTCATAATAATAATTTAAGTTTTCTTCAGTTTCAAGAG</genome_strand>
        <mrna_strand>CGCTTCTCATCATAGAAATCAGAAAAGCTAATCGGTGAGTGTTTCTTATTAAAGTACACATAAGAAAATTTCAATTAATTTATTAGCAATGTCTTTGTCAGGCTTAGTTTTGAAAAATATCTATAAAAAATCGAATGCAAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTACCAACGGGACTTGGCAATGCATTATTGCAAGCCACACAGAACATCAACAAGATATTTGATAATTTCAACTTGAATCCCTCACAATTACTGGGAAGGTACAAAGAGGATGATAAGAATTACAAAATCCGTTACGACGTGCCAGGACTCGGCAAGAAGGACGTGAAGATCATGGTTGAGGATGGAATTTTGACAATAAAAGGTGAACACAAACAAGAGAAGGAAGAAGAAGGATCAGATGATGAGTTTTGGTCATCAACAAGTTATGGTTACTATAATAATAGCATTGTGTTGCCTCAAGATGCTAAGGTTGATGAAATTAAAGCTGAGATGAAAGATGGTGTTTTGACAATTACTATTCCTAAAAGTGACAAACCTAAGAAAGATGTTAAGGAAATTGAAGTTTTGTGAGGTTTTTCTTTGGCAGTATTACCTCTGACATGTTTGTGAGTGTCTTCATAATAATAATTTAGGTTTTCTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390421" ref_strand="+" ref_description="SGN-E390421 [TUS-41-C14]">
      <seq>caagtgtgaggcatttgagtaataatgtgcagaaacagggctggtgctctgaacttgtacgtcgtttttctacagagtctgagaaacaacaagtagatggcagtggaaaatcggagaaacaagaagtagctgtttccgacagtggcaaacaatcgaagctatttcaaagaagacgccgccgtggtaatctttggagacgcaatgaatacgactttgcacctgctcttgtcgaaaacttaccaacgggacttggcaatgcattattgcaagccacacagaacatcaacaagatatttgataatttcaacttgaatccctcacaattactgggaaggtacaaagaggatgataagaattacaaaatccgttacgacgtgccaggactcggcaagaaggacgtgaagatcatggttgaggatggaattttgacaataaaaggtgaacacaaacaagagaaggaagaagaaggatcagatgatgagttttggtcatcaacaagttatggttactataataatagcattgtgttgcctcaagatgctaaggttgatgaaattaaagctgagaagaaagatggtgttttgacaattactattcctaaaagtgaaaaaccctaaaaaagatgttaaggaaatttaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="45926" stop="43283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45626" g_stop="45396" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45395" i_stop="43995" i_length="1401">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43994" g_stop="43583" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="644" r_length="413" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E390421" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45626" e_stop="45396"/>
          <exon e_start="43994" e_stop="43583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCGGTATGATTTCCCCTTTCTATTTAGTAGTCTTAATGAAATGATTTAGAATTTATTATTATTTTTAAAGCTAAATTAATTTATATATTAAAATGGAGAGAGTATTATCTTTTGCAATTTTCAATTATTAAGAATATTTTTTTTAGGCATAATACATACATACATGTTAACCCTTTATCATGACACTTTCGTGTCAGCTAGTAACTATGACTTTTAATTTTAAATGTGTATAAATAGTATATTTAATTGTTTAAAATTGAATAAATAGATATTTTTATCATACATACGTAATTTTGTGTTCTACTTAATTACTCAAGTTTAAGTGTTTACTTGTGCACGCTCAAAATTGAAATTTATAGTTTATCCCTCGAAACTAAGGGTGTGTTTGGTATGTAGGAAAATGTTTTTCTGAAAAATAAGTAGATTTTGAACTTATTTTTTCATGTTTGGTTGGTGAGTAGAAAATATTTTTCGAAAATAATTTTTAGTTTTTCATTTATGAATGAAAAATATTTTTGAGGAACATCTTTTATTTCTACTAGAGTAGAAAACAATTTATGGAATTGAAAATATTTTTTAAAAATAATTTTTTTTGGAGTGGTGGTGGTGGGGCAGGGGAGGGGAGGGGAGGAGAGGGGTGAAAAAATAAAAATTTGAAGTTGATAGTATTTTTTTAAAAAAAATTAATTTTTTTTGGGGTTGGGCGGGGATGGGGCTGGTAGGGGTAGGTAGGGGGCTGGCCATGGGAGAGGCAGAAGTTCAAAAATAAAAATTTAAAAATGAAAATATTCTTAAAAAGCAAAATTAATTTTTTTGGGAGGGGTTGGGGTGGGAGAGGTGGGTTTGGGGAGGGTTGTCAGGAATCGGGTAAAAAAATAAAATTTTGAAATTAATTTTTTTAAAATAAAAAATTGATGTTTTTTCAATAAAAAATGTAATTTGAAATTGGAAGAGAACTTTGAAAAATATTTTTCTTAATTTTTTAAGGGAAGACATTTCTTTAATTTTGAGGAAAATGAGTTGATTTTGTAAAATTTTTGCCCAACCAAATATGAGAAAATTGAAAAACATTTTTTAGAAATGTTTTCCTCATACCAAACACACTCTAAGTTAAGAGTGTATTATGTCTTCTTATTTACTTAATTTCCGTCTTTCAACATTTTATTTTATCCACCAAACAATTTAGTTTTCATAAAGATGATTCAATTTTACTAGTTTAACTTTTTACTTTGGCTTTAAGCCATGTACATGTATGGAGGTGTCAGGATTTTCAACAAAAATTTTCAAAATTTGAAGAAATAGACACAGTCTAACGAAGTTTGATATATATATATATATTTATATTATACATATTATTTTAATTATATAAAAATAATGTAGTATTTGTTTCTTTTTTTGGAACAGAAAACTTACCAACGGGACTTGGCAATGCATTATTGCAAGCCACACAGAACATCAACAAGATATTTGATAATTTCAACTTGAATCCCTCACAATTACTGGGAAGGTACAAAGAGGATGATAAGAATTACAAAATCCGTTACGACGTGCCAGGACTCGGCAAGAAGGACGTGAAGATCATGGTTGAGGATGGAATTTTGACAATAAAAGGTGAACACAAACAAGAGAAGGAAGAAGAAGGATCAGATGATGAGTTTTGGTCATCAACAAGTTATGGTTACTATAATAATAGCATTGTGTTGCCTCAAGATGCTAAGGTTGATGAAATTAAAGCTGAGATGAAAGATGGTGTTTTGACAATTACTATTCCTAAAAGTGACAAA-CCTAAGAAAGATGTTAAGGAAATTGAAGTTTT</genome_strand>
        <mrna_strand>CAAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTACCAACGGGACTTGGCAATGCATTATTGCAAGCCACACAGAACATCAACAAGATATTTGATAATTTCAACTTGAATCCCTCACAATTACTGGGAAGGTACAAAGAGGATGATAAGAATTACAAAATCCGTTACGACGTGCCAGGACTCGGCAAGAAGGACGTGAAGATCATGGTTGAGGATGGAATTTTGACAATAAAAGGTGAACACAAACAAGAGAAGGAAGAAGAAGGATCAGATGATGAGTTTTGGTCATCAACAAGTTATGGTTACTATAATAATAGCATTGTGTTGCCTCAAGATGCTAAGGTTGATGAAATTAAAGCTGAGAAGAAAGATGGTGTTTTGACAATTACTATTCCTAAAAGTGAAAAACCCTAAAAAAGATGTTAAGGAAATTTAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247912" ref_strand="+" ref_description="SGN-E247912 [cLEF-47-L11]">
      <seq>aagtgtgaggcatttgagtaataatgtgcagaaacagggctggtgctctgaacttgtacgtcgtttttctacagagtctgagaaacaacaagtagatggcagtggaaaatcggagaaacaagaagtagctgtttccgacagtggcaaacaatcgaagctatttcaaagaagacgccgccgtggtaatctttggagacgcaatgaatacgactttgcacctgctcttgtcgaaaacttaccaacgggacttggcaatgcattattgcaagccacacagaacatcaacaagatatttgataatttcaacttgaatccctcacaattactgggaaggtacaaagaggatgataagaattacaaaatccgttacgacgtgccaggactcggcaagaaggacgtgaagatcatggttgaggatggaattttgacaataaaaggtgaacacaaacaagagaaggaagaagaaggatcagatgatgagttttggtcatcaacaagttatggttactataataatagcattgtgttgcctcaagatgctaaggttgatgaaattaaagctgagatgaaagatggtgttttgacaattactattcctaaaagtgacaaacctaagaaagatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="45925" stop="43299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45625" g_stop="45396" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45395" i_stop="43995" i_length="1401">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43994" g_stop="43599" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="626" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E247912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45625" e_stop="45396"/>
          <exon e_start="43994" e_stop="43599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCGGTATGATTTCCCCTTTCTATTTAGTAGTCTTAATGAAATGATTTAGAATTTATTATTATTTTTAAAGCTAAATTAATTTATATATTAAAATGGAGAGAGTATTATCTTTTGCAATTTTCAATTATTAAGAATATTTTTTTTAGGCATAATACATACATACATGTTAACCCTTTATCATGACACTTTCGTGTCAGCTAGTAACTATGACTTTTAATTTTAAATGTGTATAAATAGTATATTTAATTGTTTAAAATTGAATAAATAGATATTTTTATCATACATACGTAATTTTGTGTTCTACTTAATTACTCAAGTTTAAGTGTTTACTTGTGCACGCTCAAAATTGAAATTTATAGTTTATCCCTCGAAACTAAGGGTGTGTTTGGTATGTAGGAAAATGTTTTTCTGAAAAATAAGTAGATTTTGAACTTATTTTTTCATGTTTGGTTGGTGAGTAGAAAATATTTTTCGAAAATAATTTTTAGTTTTTCATTTATGAATGAAAAATATTTTTGAGGAACATCTTTTATTTCTACTAGAGTAGAAAACAATTTATGGAATTGAAAATATTTTTTAAAAATAATTTTTTTTGGAGTGGTGGTGGTGGGGCAGGGGAGGGGAGGGGAGGAGAGGGGTGAAAAAATAAAAATTTGAAGTTGATAGTATTTTTTTAAAAAAAATTAATTTTTTTTGGGGTTGGGCGGGGATGGGGCTGGTAGGGGTAGGTAGGGGGCTGGCCATGGGAGAGGCAGAAGTTCAAAAATAAAAATTTAAAAATGAAAATATTCTTAAAAAGCAAAATTAATTTTTTTGGGAGGGGTTGGGGTGGGAGAGGTGGGTTTGGGGAGGGTTGTCAGGAATCGGGTAAAAAAATAAAATTTTGAAATTAATTTTTTTAAAATAAAAAATTGATGTTTTTTCAATAAAAAATGTAATTTGAAATTGGAAGAGAACTTTGAAAAATATTTTTCTTAATTTTTTAAGGGAAGACATTTCTTTAATTTTGAGGAAAATGAGTTGATTTTGTAAAATTTTTGCCCAACCAAATATGAGAAAATTGAAAAACATTTTTTAGAAATGTTTTCCTCATACCAAACACACTCTAAGTTAAGAGTGTATTATGTCTTCTTATTTACTTAATTTCCGTCTTTCAACATTTTATTTTATCCACCAAACAATTTAGTTTTCATAAAGATGATTCAATTTTACTAGTTTAACTTTTTACTTTGGCTTTAAGCCATGTACATGTATGGAGGTGTCAGGATTTTCAACAAAAATTTTCAAAATTTGAAGAAATAGACACAGTCTAACGAAGTTTGATATATATATATATATTTATATTATACATATTATTTTAATTATATAAAAATAATGTAGTATTTGTTTCTTTTTTTGGAACAGAAAACTTACCAACGGGACTTGGCAATGCATTATTGCAAGCCACACAGAACATCAACAAGATATTTGATAATTTCAACTTGAATCCCTCACAATTACTGGGAAGGTACAAAGAGGATGATAAGAATTACAAAATCCGTTACGACGTGCCAGGACTCGGCAAGAAGGACGTGAAGATCATGGTTGAGGATGGAATTTTGACAATAAAAGGTGAACACAAACAAGAGAAGGAAGAAGAAGGATCAGATGATGAGTTTTGGTCATCAACAAGTTATGGTTACTATAATAATAGCATTGTGTTGCCTCAAGATGCTAAGGTTGATGAAATTAAAGCTGAGATGAAAGATGGTGTTTTGACAATTACTATTCCTAAAAGTGACAAACCTAAGAAAGATGTTA</genome_strand>
        <mrna_strand>AAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTACCAACGGGACTTGGCAATGCATTATTGCAAGCCACACAGAACATCAACAAGATATTTGATAATTTCAACTTGAATCCCTCACAATTACTGGGAAGGTACAAAGAGGATGATAAGAATTACAAAATCCGTTACGACGTGCCAGGACTCGGCAAGAAGGACGTGAAGATCATGGTTGAGGATGGAATTTTGACAATAAAAGGTGAACACAAACAAGAGAAGGAAGAAGAAGGATCAGATGATGAGTTTTGGTCATCAACAAGTTATGGTTACTATAATAATAGCATTGTGTTGCCTCAAGATGCTAAGGTTGATGAAATTAAAGCTGAGATGAAAGATGGTGTTTTGACAATTACTATTCCTAAAAGTGACAAACCTAAGAAAGATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258302" ref_strand="+" ref_description="SGN-E258302 [cLEG-49-K18]">
      <seq>aaaagctaatcggtgagtgtttcttattaaagtacacataagaaaatttcaattaatttattagcaatgtctttgtcaggcttagttttgaaaaatatctataaaaaatcgaatgcaagtgtgaggcatttgagtaataatgtgcagaaacagggctggtgctctgaacttgtacgtcgtttttctacagagtctgagaaacaacaagtagatggcagtggaaaatcggagaaacaagaagtagctgtttccgacagtggcaaacaatcgaagctatttcaaagaagacgccgccgtggtaatctttggagacgcaatgaatacgactttgcacctgctcttgtcgaaaacttaccaacgggacttggcaatgcattattgcaagccacacagaacatcaacaagatatttgataatttcaacttgaatccctcacaattactgggaaggtacaaagaggatgataagaattacaaaatccgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="46041" stop="43556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45741" g_stop="45396" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45395" i_stop="43995" i_length="1401">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43994" g_stop="43856" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="485" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E258302" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45741" e_stop="45396"/>
          <exon e_start="43994" e_stop="43856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTAATCGGTGAGTGTTTCTTATTAAAGTACACATAAGAAAATTTCAATTAATTTATTAGCAATGTCTTTGTCAGGCTTAGTTTTGAAAAATATCTATAAAAAATCGAATGCAAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCGGTATGATTTCCCCTTTCTATTTAGTAGTCTTAATGAAATGATTTAGAATTTATTATTATTTTTAAAGCTAAATTAATTTATATATTAAAATGGAGAGAGTATTATCTTTTGCAATTTTCAATTATTAAGAATATTTTTTTTAGGCATAATACATACATACATGTTAACCCTTTATCATGACACTTTCGTGTCAGCTAGTAACTATGACTTTTAATTTTAAATGTGTATAAATAGTATATTTAATTGTTTAAAATTGAATAAATAGATATTTTTATCATACATACGTAATTTTGTGTTCTACTTAATTACTCAAGTTTAAGTGTTTACTTGTGCACGCTCAAAATTGAAATTTATAGTTTATCCCTCGAAACTAAGGGTGTGTTTGGTATGTAGGAAAATGTTTTTCTGAAAAATAAGTAGATTTTGAACTTATTTTTTCATGTTTGGTTGGTGAGTAGAAAATATTTTTCGAAAATAATTTTTAGTTTTTCATTTATGAATGAAAAATATTTTTGAGGAACATCTTTTATTTCTACTAGAGTAGAAAACAATTTATGGAATTGAAAATATTTTTTAAAAATAATTTTTTTTGGAGTGGTGGTGGTGGGGCAGGGGAGGGGAGGGGAGGAGAGGGGTGAAAAAATAAAAATTTGAAGTTGATAGTATTTTTTTAAAAAAAATTAATTTTTTTTGGGGTTGGGCGGGGATGGGGCTGGTAGGGGTAGGTAGGGGGCTGGCCATGGGAGAGGCAGAAGTTCAAAAATAAAAATTTAAAAATGAAAATATTCTTAAAAAGCAAAATTAATTTTTTTGGGAGGGGTTGGGGTGGGAGAGGTGGGTTTGGGGAGGGTTGTCAGGAATCGGGTAAAAAAATAAAATTTTGAAATTAATTTTTTTAAAATAAAAAATTGATGTTTTTTCAATAAAAAATGTAATTTGAAATTGGAAGAGAACTTTGAAAAATATTTTTCTTAATTTTTTAAGGGAAGACATTTCTTTAATTTTGAGGAAAATGAGTTGATTTTGTAAAATTTTTGCCCAACCAAATATGAGAAAATTGAAAAACATTTTTTAGAAATGTTTTCCTCATACCAAACACACTCTAAGTTAAGAGTGTATTATGTCTTCTTATTTACTTAATTTCCGTCTTTCAACATTTTATTTTATCCACCAAACAATTTAGTTTTCATAAAGATGATTCAATTTTACTAGTTTAACTTTTTACTTTGGCTTTAAGCCATGTACATGTATGGAGGTGTCAGGATTTTCAACAAAAATTTTCAAAATTTGAAGAAATAGACACAGTCTAACGAAGTTTGATATATATATATATATTTATATTATACATATTATTTTAATTATATAAAAATAATGTAGTATTTGTTTCTTTTTTTGGAACAGAAAACTTACCAACGGGACTTGGCAATGCATTATTGCAAGCCACACAGAACATCAACAAGATATTTGATAATTTCAACTTGAATCCCTCACAATTACTGGGAAGGTACAAAGAGGATGATAAGAATTACAAAATCCGTTA</genome_strand>
        <mrna_strand>AAAAGCTAATCGGTGAGTGTTTCTTATTAAAGTACACATAAGAAAATTTCAATTAATTTATTAGCAATGTCTTTGTCAGGCTTAGTTTTGAAAAATATCTATAAAAAATCGAATGCAAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTACCAACGGGACTTGGCAATGCATTATTGCAAGCCACACAGAACATCAACAAGATATTTGATAATTTCAACTTGAATCCCTCACAATTACTGGGAAGGTACAAAGAGGATGATAAGAATTACAAAATCCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209470" ref_strand="+" ref_description="SGN-E209470 [cLEC-54-I15]">
      <seq>ttcttattaaagtacacataagaaaatttcaattaatttattagcaatgtctttgtcaggcttagttttgaaaaatatctataaaaaatcgaatgcaagtgtgaggcatttgagtaataatgtgcagaaacagggctggtgctctgaacttgtacgtcgtttttctacagagtctgagaaacaacaagtagatggcagtggaaaatcggagaaacaagaagtagctgtttccgacagtggcaaacaatcgaagctatttcaaagaagacgccgccgtggtaatctttggagacgcaatgaatacgactttgcacctgctcttgtcgaaaacttaccaacgggacttggcaatgcattattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="46021" stop="43659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45721" g_stop="45396" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45395" i_stop="43995" i_length="1401">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43994" g_stop="43959" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="362" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E209470" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45721" e_stop="45396"/>
          <exon e_start="43994" e_stop="43959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTATTAAAGTACACATAAGAAAATTTCAATTAATTTATTAGCAATGTCTTTGTCAGGCTTAGTTTTGAAAAATATCTATAAAAAATCGAATGCAAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCGGTATGATTTCCCCTTTCTATTTAGTAGTCTTAATGAAATGATTTAGAATTTATTATTATTTTTAAAGCTAAATTAATTTATATATTAAAATGGAGAGAGTATTATCTTTTGCAATTTTCAATTATTAAGAATATTTTTTTTAGGCATAATACATACATACATGTTAACCCTTTATCATGACACTTTCGTGTCAGCTAGTAACTATGACTTTTAATTTTAAATGTGTATAAATAGTATATTTAATTGTTTAAAATTGAATAAATAGATATTTTTATCATACATACGTAATTTTGTGTTCTACTTAATTACTCAAGTTTAAGTGTTTACTTGTGCACGCTCAAAATTGAAATTTATAGTTTATCCCTCGAAACTAAGGGTGTGTTTGGTATGTAGGAAAATGTTTTTCTGAAAAATAAGTAGATTTTGAACTTATTTTTTCATGTTTGGTTGGTGAGTAGAAAATATTTTTCGAAAATAATTTTTAGTTTTTCATTTATGAATGAAAAATATTTTTGAGGAACATCTTTTATTTCTACTAGAGTAGAAAACAATTTATGGAATTGAAAATATTTTTTAAAAATAATTTTTTTTGGAGTGGTGGTGGTGGGGCAGGGGAGGGGAGGGGAGGAGAGGGGTGAAAAAATAAAAATTTGAAGTTGATAGTATTTTTTTAAAAAAAATTAATTTTTTTTGGGGTTGGGCGGGGATGGGGCTGGTAGGGGTAGGTAGGGGGCTGGCCATGGGAGAGGCAGAAGTTCAAAAATAAAAATTTAAAAATGAAAATATTCTTAAAAAGCAAAATTAATTTTTTTGGGAGGGGTTGGGGTGGGAGAGGTGGGTTTGGGGAGGGTTGTCAGGAATCGGGTAAAAAAATAAAATTTTGAAATTAATTTTTTTAAAATAAAAAATTGATGTTTTTTCAATAAAAAATGTAATTTGAAATTGGAAGAGAACTTTGAAAAATATTTTTCTTAATTTTTTAAGGGAAGACATTTCTTTAATTTTGAGGAAAATGAGTTGATTTTGTAAAATTTTTGCCCAACCAAATATGAGAAAATTGAAAAACATTTTTTAGAAATGTTTTCCTCATACCAAACACACTCTAAGTTAAGAGTGTATTATGTCTTCTTATTTACTTAATTTCCGTCTTTCAACATTTTATTTTATCCACCAAACAATTTAGTTTTCATAAAGATGATTCAATTTTACTAGTTTAACTTTTTACTTTGGCTTTAAGCCATGTACATGTATGGAGGTGTCAGGATTTTCAACAAAAATTTTCAAAATTTGAAGAAATAGACACAGTCTAACGAAGTTTGATATATATATATATATTTATATTATACATATTATTTTAATTATATAAAAATAATGTAGTATTTGTTTCTTTTTTTGGAACAGAAAACTTACCAACGGGACTTGGCAATGCATTATTGC</genome_strand>
        <mrna_strand>TTCTTATTAAAGTACACATAAGAAAATTTCAATTAATTTATTAGCAATGTCTTTGTCAGGCTTAGTTTTGAAAAATATCTATAAAAAATCGAATGCAAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTACCAACGGGACTTGGCAATGCATTATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258245" ref_strand="+" ref_description="SGN-E258245 [cLEG-49-L16]">
      <seq>aaaagctaatcggtgagtgtttcttattaaagtacacataagaaaatttcaattaatttattagcaatgtctttgtcaggcttagttttgaaaaatatctataaaaaatcgaatgcaagtgtgaggcatttgagtaataatgtgcagaaacagggctggtgctctgaacttgtacgtcgtttttctacagagtctgagaaacaacaagtagatggcagtggaaaatcggagaaacaagaagtagctgtttccgacagtggcaaacaatcgaagctatttcaaagaagacgccgccggggtaatctttggaaacgcaatgaatacgactttgcacctgctcttgtcgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="-" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="46041" stop="45096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45741" g_stop="45396" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="-" ref_id="SGN-E258245" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45741" e_stop="45396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTAATCGGTGAGTGTTTCTTATTAAAGTACACATAAGAAAATTTCAATTAATTTATTAGCAATGTCTTTGTCAGGCTTAGTTTTGAAAAATATCTATAAAAAATCGAATGCAAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCG</genome_strand>
        <mrna_strand>AAAAGCTAATCGGTGAGTGTTTCTTATTAAAGTACACATAAGAAAATTTCAATTAATTTATTAGCAATGTCTTTGTCAGGCTTAGTTTTGAAAAATATCTATAAAAAATCGAATGCAAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGGGGTAATCTTTGGAAACGCAATGAATACGACTTTGCACCTGCTCTTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310244" ref_strand="+" ref_description="SGN-E310244 [cTOA-1-G17]">
      <seq>ccataaccgtttaaataaattctctttttcttcatttctctgtaaaatcatctatggcttctggagcgaactctttgatgtggttcaagaagggtttgagactccatgataatccagctttggaatatgcagctaaaggatcgaagtttttgtaccctgttttcgtgattgatccacactatatggaccctgatccgactgcattttctctgggttcatctaaagccgggttgaaccggatacagtttttgcttgaaagccttgctgatctcgatttgagtcttaagaaggttggttcacgtttgttggtgctcaagggtgaccctggtgagctcttgattcgctgcttgaaggagtggagcataagcaaactttgctttgagtacgacacagagccctactatcaagctttagatgaaaaagttaaaggctatgtttctggaactggtgtagagattttctctcctgtgagccataccctctacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="48604" stop="51052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48904" g_stop="49259" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49260" i_stop="50447" i_length="1188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50448" g_stop="50519" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="428" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50520" i_stop="50691" i_length="172">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50692" g_stop="50752" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="489" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E310244" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48904" e_stop="49259"/>
          <exon e_start="50448" e_stop="50519"/>
          <exon e_start="50692" e_stop="50752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATAACCGTTTAAATAAATTCTCTTTTTCTTCATTTCTCTGTAAAATCATCTATGGCTTCTGGAGCGAACTCTTTGATGTGGTTCAGGAAGGGTTTGAGACTCCATGATAATCCAGCTTTGGAATATGCAGCTAAAGGATCGAAGTTTTTGTACCCTGTTTTCGTGATTGATCCACACTATATGGACCCTGATCCGACTGCATTTTCTCTGGGTTCATCTAAAGCCGGGTTGAACCGGATACAGTTTTTGCTTGAAAGCCTTGCTGATCTCGATTTGAGTCTTAAGAAGGTTGGTTCACGTTTGTTGGTGCTCAAGGGTGACCCTGGTGAGCTCTTGATTCGCTGCTTGAAGGAGGTAATCACTGTTATTACTTTAAATTCTACGGGTATTTAACTATTTTAGTATTCAAGTAATAACTAAGAAGAGTTGGATTCAGTATTTAGAATGCATGTAGTATTATCTTTTGTGTTTTAGATAAATGTATATAGTTGAGTATCGGGTTTCTCCATGAAAAAAATGAACTCGTGTATTGGATATTAAAGGTTTTTGGCCATCAAAAAGATTGACTTTTTTCCGTAGTTGAGACCAGCATGTTTGGCCATAAAATTTTGGAATTCAACTTGAAGTTGAATTTCAGAATTTGAAAAACAATAAAAAGGTGTTTTCACTCCAAGTTACTCACATAAAGTCCGGATTTGCAAAATCACATTTTTTCACTTTGAAAACAAAAAGTACTTTTTTTTCTTCAAACTTCACTATGAAACATGGCCAAACGTCCACACTTATTAAGAAACCTATCATGAAATAATTAGTGTAGCTTAGTTTCCAGCAAGTTGTTGTCGGTGTTGGATATGGTCATATAGACATGATTGTGCAGATGAAGCACCTCTGTGACAGTTACAGTTCAATTTAGTTATCAACAAATGGAATATAAGTTGATTAACTTACGTACAAGAAAAATGATTTCTTAAGTTTATGAGCTATCAAAATGTGTTATTGCCATGTGATTCAGGGTTTATGATTGATTTTGCTTGCTGAAAATGTTGTATGTGGTTTCCATGCTGTTTGCTAATGTTGGAGCAATCGTTTAAGGTTCAAATTTGAATATGTTTGTCAATTGAATTTTACATATTATGTTGGGTATGACAGTTTAGATCATGTAACAATTTGTAAAGTTTTTGGTGTTCTAGAGATGCAGTTAGCCCTTTTAAGCTCTCTGGTCCATATCTGGCTATGGCTGAGCTAATAGATCTACTTATACACAGTTATTTAGTTATCAATTGATCAATATTACTTAAGAAAGTTCAGTCATGCTTGTGCTTTGAGTCTTGGAAAATCATGAAACTTAGAAACTAGAGTCAAGCTATTGATTGATCCGCCTATATGCTGTGAAAGACGACCGTTTCTTTTATGGTTTTCTTTTCCTCTTTCAAGTTTCAACATGCGTCTGTCCAATGTAACTTTGTACTGACATTGTTCTTTTATTTTGAGAACCAATTCATTTATTTGCCATTGATTTGCATAACTTGACATAACTTTCAGTGGAGCATAGGCAAACTTTGCTTTGAGTACGACACAGAGCCCTACTATCAAGCTTTAGATGAAAAAGTTAAGGTAAAATTTCATTTCCATCTGAGGAAAAGATTTGAGTACTTAATGGGAGCTTAAGGCAGATCCTGTATGGTGTTTTTTGGTTGATTAGATAATTTCTATACTAAGAAGTCTTTTTTTTCACATTCCGAATGATTCGGTGCTTGTCTAAAGAAAAATTATATTTGCTCCACAGGGCTATGTTTCTGGAACTGGTGTAGAGATTTTCTCTCCTGTGAGCCATACCCTCTACAATC</genome_strand>
        <mrna_strand>CCATAACCGTTTAAATAAATTCTCTTTTTCTTCATTTCTCTGTAAAATCATCTATGGCTTCTGGAGCGAACTCTTTGATGTGGTTCAAGAAGGGTTTGAGACTCCATGATAATCCAGCTTTGGAATATGCAGCTAAAGGATCGAAGTTTTTGTACCCTGTTTTCGTGATTGATCCACACTATATGGACCCTGATCCGACTGCATTTTCTCTGGGTTCATCTAAAGCCGGGTTGAACCGGATACAGTTTTTGCTTGAAAGCCTTGCTGATCTCGATTTGAGTCTTAAGAAGGTTGGTTCACGTTTGTTGGTGCTCAAGGGTGACCCTGGTGAGCTCTTGATTCGCTGCTTGAAGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCATAAGCAAACTTTGCTTTGAGTACGACACAGAGCCCTACTATCAAGCTTTAGATGAAAAAGTTAAA............................................................................................................................................................................GGCTATGTTTCTGGAACTGGTGTAGAGATTTTCTCTCCTGTGAGCCATACCCTCTACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310317" ref_strand="+" ref_description="SGN-E310317 [cTOA-1-G3]">
      <seq>agtgagtcaaccttggtcgaagccgccggccagtggcacccttatttgccatttcatttccacaaaaaagagaagatacagagcgttgataagaacaagtctccatctatatacacacacaggggctgacctgagatccaactgaacacacactatgtcgagaaaactctcttcgcacctccgaaccctacacctacttcgatctactcccaaaaccaattcatttgccgccgccgccgccgccaccaccttcgtatcttcttctcaatctccggcagccttccgttcgtcggtcactttcttccctcgccacttcagtaccgtatcagagaatgttgttaagaaagtggaggatgtaatgccgattgcaactggtcatgagcgtgaggagcttgaagctgagctccaaagaagggatattcttgacattaactttcctgaaggtccttttggtacaaaagaagcgcctgctgttgtcaaatcctactatgatagaagagttgtaggatgccctggagatgaaggagaagatgagcatgatgttgtttggttctggctcgagaagggcaagccacatgaatgcccagtatgctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="54976" stop="61745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55276" g_stop="55604" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55781" g_stop="55860" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="409" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55967" g_stop="56017" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="460" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61189" g_stop="61255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="527" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61256" i_stop="61376" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61377" g_stop="61445" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="596" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E310317" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55276" e_stop="55604"/>
          <exon e_start="55781" e_stop="55860"/>
          <exon e_start="55967" e_stop="56017"/>
          <exon e_start="61189" e_stop="61255"/>
          <exon e_start="61377" e_stop="61445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAGTCAACCTTGGCCGAAGCCGCCGGCCAGTGGCACCCTTATTTGCCATTTCATTTCCACAAAAAAGAGAAGATACAGAGCGTTGATAAGAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAGGTATCCTTTCGCATTTCTCTCTCTACTCTCAACCCTAATTTAATCAGATCTTACGAGTTTGAATAGAGTGACTTGATTGATTTATTGTACTTGCGTTATTTGATATTTTTTTCTAGTTGGTTCCTTTTTTGTTTATGTGATGAGTATGCATTTTTTGTTGTTGTTGTGTGGAGTAGAGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAAGTGAGTTATCACCATGTTTTACTAATTTAGCGTTGAGATATTACGTGTACTAATTCAAATGTTATTGATAGTGACTGAAAATTACATTTGTTGTGTTTCTCTTTAGGGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAGGTTAGTGTGGAACTGTGGGTTTCCTAGTAACTTTTGGTGCTAATAGGCATTAGTTATTGCCCCTTTTGCTTTAGTCATCATTATTGTTGATCACTAAATTGTTTTGTCTTTTATCCAGATTAGTTATTCTCATCTGATGCATAACGATTACTATATCATGTGATTGGTCATTCTCTTATTGACAGGGATAATGAGTAATGAGCAATCATTGGAAATGTTTGGAAGTAGTTGTTTTTAGGTGTTCTTTTGAGTGTTAGGTTCTTCTGAGAAAATTCAATTGAAGATGAAAGCAAGTCAGATAAAAATGAGCAGTGTAATATATGTTCTCGTAAAGTAACATCTGAGTTGTGAATATATTTTAGTTTGCAATCCGAGTCTGAGGAATATGTTTTGGTTTTAACTATTACTCCAGAATGATTATGGAGTTCTATTAAGCTAAAGGCACGACTTGGATCAATCTAAACCAGGGTTATGTTTTTCTTAAGAGGCTGTTCCATTGTTCCAAATTTTAAAGCTGTAAACAACAAATATTTCATTATCCGAAATAGGACCTGGATCCGCCTTGCTATTTCTCGCTTCTTTACTAGTCATAGTTATGTGCTTACTTCAGGAAAAGGGAGGATTGAGGAGAAGAGAAAGGGGTATGATGGATGGTTGATTTTGAATATTTGTACTTTTGTTCATGTTGGTTGGGGCATGAGTGAAAGAGAAGTAAATGAGCTTGTCTCACTTTCCCAGTCTAATCTAAAGAGATTAAATAGGATTAGCTGGAATTGCAAAGTCCCCTCATTTTTTCAATATTAAATAGGATTAGCTGGAGTTGCAAAGTTCCCTCATTTTCGATTGGACGATTCCTAACCTAACCTCTTCGTGCTCCAAGTCTCCAACATCTTGTGAAAGCATGTTTTGGATACACATTAACCCTGCTGGTTTCCAAAATTAATATACGACAACTTTGCCTGAACTTCAAGCGAGTTGGGTTAGCTGTATGAGTGTTTTATGTTTCTTTCCCTCTGCTTGGTTAAGTTAATTCCATTACTCAAACTTAGAAATAATCAAAATTCAGGGGTTATCTGAACCTAAACATTTCTAAATCTGAAACTTATCTTTGCACTTACAATTGAAAAGGCTCTTAATGTCAAAGATAACGTAAGTGCACTAACACGACAAAGTAATCCTTATTAATCTCATACTTTCACTTTTAGTCCACCCCAAAAGGAATAAAAACTAACTTTTTTCATTTTTACCCTAAATGGATGATTTATAGCTACACAAATATTGAAGATTTATTTTAGACCACATATTTCAAAAATCTTTCCTTTTTTTTTTGATGAAGTAAATGTTTCATTGAAGGCATCAAGAAGATGCAAATTAGTTACATAAGTAGAGTCTTTCCTTTATTTCTTTAACTTCATTTCAAGTCAAACGGTGCCACATAAATTGGAACAGAGAGAGTAGTTGGTATCACATATGCAAATCTTTTGCTTTTGTATGTTCTGCTGATTGTGTTCGGTCATGTGCTATTCTATTTGAGAGACCGCGACCATTTCTAATAACTTCCCCTATGAAATTTTATGCTGCCACTTTTCTCCTTTAATGTATCAAAATCATAGTGTGGCAACTAGAGGTCCGTGCATTTGGAAGATATACCAACCTTTTCTTGCTTTATCCTCTACGTGTGTTAGATATAGTTGCTTTGGAATGTAATCATTTCTAAGCTAATCTTTATCTTAGTGACTATACATCCATTTTAACATCCTCAAGTCTTACTTTGTCTCAGTAGTAGCTTGGTATTGAGTTTTCATTGATAAGATACTTATAATTATAAAAAAAATTCATTGACAATTTTCTTGTGGATATGGTCTGCTCTCTTTTACAACATTTCTGGTTCCATCATCATTTTAATGAACTTGTCTTCATTTTGGTAGGTATCTACCTAGCACATATTACTCTCGTAACACTGTCATATTTAGCAATCCTACTTTAGTTTTATATATAAAGCATTCTCATGGAATATTGAACATATATATCTAGATATGTATTTCGACACCATAATATTGTCTAATCTTACCTCAATTTTTTTTTATTGAGCTAAACTTGCAGTTTTTATTGTATACTAAAGCCCTAAGGGGTAGTTTGGAACGCGATTTAGTTATATGGGGATTGTACTGTGAAGATTATGATGTTCTGATTAAATAATAATGCTTAGTAGTCAATCAAGTGTATTGAGAAGCATGATGTCTTAGTTTCAAATCTCCTCAGAGACAAAATACACTAGGTAATTTCTTCCCATTTGTTCTAGAATTGGTGGATAAAGTTATCTAGCACATACCCTTCTGGATGACCCAGTGGTTCGAGCTTAGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGTGAAAGCAAGTGGTTTGCCTTCTGGGCCGAGCTCGTCGCACCAGGCTTGCCTAGTGCAGGTTATCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCTGTTGTCATCAAAAAAAAGTTATCTAGTAAATGATGTTGTTGGGAGGTGACATGTATCCCACAAAATTAGTCGAGGTGCGTGAAGTTGGCCCGGAGTAATGTTAGTATTGGTACTTATGGAGTTGAGGTTTAGAGGAATATTAGAAACATGTGGCCCAAATTAGAGGCTAATTTGTACATACAGGTGGGAGATGGTAGGTGAGCGAAATTCTGGGGAGTTGCTGGGATAAATAGATACCTTTGATGGACGATCTGTTCATGCTATGCAATAACCTAGAGGCAAAGATCAAGAACTGCTGGATAATACAGGGGCAGAATCTTTCCTTCAGCAGATTCTACTGAACGATTGAGATGTAGAGAGAGCAGCCAAACTGCTAGTAGAAACAGGGAATTCCCCGGCACCAACTGTTCCTGATTCAGCGATGGTTACAGACTTACAGTTTACACAATGAAGATGACACTTTCACTATCAATAGGGCCTATAAAATAGAAAACAATCAAAATAGAAGAAACAACAAAGATTTTGGTTGTGGAGACACTTAGCACCAACCAAGATAAAATGTTTTACATGATTGGTTGCTAGAAGGGACTGCCTGACCCATGAAGTCCTGAAGAAGATAAGAGCCAGCAAAGTTTGTGGAGGAAGGTGTGGAGAAACTTAGCACCAAGCCACCAACCAAGTTAAAATGTTTTACATGGCTGGTTGCTAGAAGAGTCTAGTATCTTGGTGTTCGTTATATGGGAAGATAAAAGAGACCAATAACCACTTATTGTTGCGTTACGGTTTCACAACACATTTAACAGGCTTGGGCCATATTTCTCAACCTCACAAACAAAGTGGACTATGCCTGAACACACACAGACCTGTTGAGTTGCTGGATTAGAAAAGGGGGCAATAAGAGACAGAAGGCACGGTGGAGACTAATCCCACATTGCATATGGTGGACGATATCGAGAGAGGAAAAGTAGAAATTTTGACGATAAATTCAATTCCGTTAATAAGGTTAACTGGAACTGCATTGTTTCTCCCTATTTTTGGTGTAAAGAAATAGGTTGAGAGGAAACAAAACAACTTTTAGAATTCTTAGGATCTCTATTAGTATTACTTTCTCTGTTCCTACTTTTGAAGGTCCTCAGCATTAAGGAAGAATACAACATTACCATTTGCAGGAACAAAGAAAAGAGTGTGTATTAGCAATTAAGAGAGAAAATTTGAAGTATAAAAATGCCCCTAAATTAGGCAAACCCCTACATAACATTATTAATACTCATCACATGAAAGTCTTTACATCACCATTCATTTTATAACAACCCCTTCATTATTTTTCACCAAACAACCATGCATTTTAATTCCCGTGTGACTAGTGTGTGAAGTGAACAACCCCTCACTTTCTTAGCATACTTCTCCAACCTTTGGTTGGCTTTCCGATAATCCATTGTGAATATGATAGGAGCAAATATCTATGAGGTTCTACTTCTGCCTGTTTATTTGAAATGTACTGCGTAAATATGGTTTCCAACATATTATTATTATTTTTATAGTCTTATTAATCTGGTACCAAGCTGGTACAGAAGCAAGTACAAAGCATAACTACATAACTTCCACCAATCACACTAGAACTAGATACTGCCCCCCGAATAAGTACAGCCAAACCAAGTAACGATCCATCCTATTTTAAGTACTGCTAGAACACCATAAGATATATTGTTGATGCATTTCGTTAATGCTGATAAATTGGAAATTCTAAGTTAGCGTTTTCTTCTACTTTAGCCCATTCTACGGAGCACAGTCAGTCGCTTAATGGTCTGCCTGTTTCTTGTTTGATTATCACTGAACTAATGGTGGTCTTATCATATGTAATGGAGGCCATTTCTTTTTCAAGTAGTGATGTAGTTCAGGTCATGCCTTGTCTTTTGCATATGCTCTTGGAGATGTAGTTAAACAGAGGTCTTCTCAGCTTCCATAATTAGCTTGTACATTTTGATAATATATGATTGCTTTAGTAAACTTTCATTAGTGCAATTGATTAGTAGTATTGACTGTCTTATTTTATCTTGTAATCCTTCACCAACACGGAAACAACCTCCTCTATTCACCCCACCCTCCCTAGACCCTGCTTGTGGGATTAATGAATCCTTTACCAGTGAAAACTAAGTTACAGGGGTGTGTGGTGAATATTGACAAAATTTGCAAAGCAAATATTTCTTGTGTTTTAACTACTTTCAGTGGTTGACATCACTACTATTGCAACTTATAGGTCTCAAGTTTCCATTATTTTTCCATGTGAAAATAATCTTCTGTTGAATCTTTTTTACTTTTTGATCAATGGGGCATGCAAATTTTATTATTGTTTTTCTGCTAACGCTGATGGCTTCTTAATTAAAACGTTGCTAATTTCAATTCTTCAAATAAGTATAATTTGTGTGGCTGATAAGTGATTAAAGATTATATGTCAGCACTAACCACATGGTAATTGATGTTATGTGGAGATCACTTATGTTTGTTTTCAGTTATGTTTCAAGTTTGATGCATATGGAAATATGGATATGATCAACACTTTGAATGTTACCTTGTCAAAAATAAATAAATGATCAAATTTTGTGTGTTTTATATTGTAGGAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAGGTAAGTTTCCATTATTTATTTGACAAGTCTCCATCATACATTAATTCCTTTAGTCAGTTGACTTCAATCTTTAGTTGGTTTCTAGTCATGTCCTCTTTCATTTTCTATTCTAATTCAACAGAAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCAC</genome_strand>
        <mrna_strand>AGTGAGTCAACCTTGGTCGAAGCCGCCGGCCAGTGGCACCCTTATTTGCCATTTCATTTCCACAAAAAAGAGAAGATACAGAGCGTTGATAAGAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTTGCCGCCGCCGCCGCCGCCACCACCTTCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG................................................................................................................................................................................AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA..........................................................................................................AGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAG.........................................................................................................................AAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392368" ref_strand="+" ref_description="SGN-E392368 [TUS-35-H20]">
      <seq>tgagtcaaccttggccgaagccgccggccagtggcacccttatttgccatttcatttccacaaaaaagagaagatacagagcgttgataagaacaagtctccatctatatacacacacaggggctgacctgagatccaactgaacacacactatgtcgagaaaactctcttcgcacctccgaaccctacacctacttcgatctactcccaaaaccaattcattcgccgccgccgccgccgccaccacctccgtatcttcttctcaatctccggcagccttccgttcgtcggtcactttcttccctcgccacttcagtaccgtatcagagaatgttgttaagaaagtggaggatgtaatgccgattgcaactggtcatgagcgtgaggagcttgaagctgagctccaaggaagggatattcttgacattaactttcctgaaggtccttttggtacaaaggaagcgcctgctgttgtcaaatcctactatgatagaagagttgtaggatgccctggagatgaaggagaagatgagcatgatgttgtttggttctggctcgagaagggcaagccacatgaatgcccagtatgctcacagtattttgtgttggaagtggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="54978" stop="61758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55278" g_stop="55604" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55781" g_stop="55860" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="407" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55967" g_stop="56017" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="458" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61189" g_stop="61255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="525" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61256" i_stop="61376" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61377" g_stop="61456" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="605" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E392368" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55278" e_stop="55604"/>
          <exon e_start="55781" e_stop="55860"/>
          <exon e_start="55967" e_stop="56017"/>
          <exon e_start="61189" e_stop="61255"/>
          <exon e_start="61377" e_stop="61456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTCAACCTTGGCCGAAGCCGCCGGCCAGTGGCACCCTTATTTGCCATTTCATTTCCACAAAAAAGAGAAGATACAGAGCGTTGATAAGAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAGGTATCCTTTCGCATTTCTCTCTCTACTCTCAACCCTAATTTAATCAGATCTTACGAGTTTGAATAGAGTGACTTGATTGATTTATTGTACTTGCGTTATTTGATATTTTTTTCTAGTTGGTTCCTTTTTTGTTTATGTGATGAGTATGCATTTTTTGTTGTTGTTGTGTGGAGTAGAGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAAGTGAGTTATCACCATGTTTTACTAATTTAGCGTTGAGATATTACGTGTACTAATTCAAATGTTATTGATAGTGACTGAAAATTACATTTGTTGTGTTTCTCTTTAGGGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAGGTTAGTGTGGAACTGTGGGTTTCCTAGTAACTTTTGGTGCTAATAGGCATTAGTTATTGCCCCTTTTGCTTTAGTCATCATTATTGTTGATCACTAAATTGTTTTGTCTTTTATCCAGATTAGTTATTCTCATCTGATGCATAACGATTACTATATCATGTGATTGGTCATTCTCTTATTGACAGGGATAATGAGTAATGAGCAATCATTGGAAATGTTTGGAAGTAGTTGTTTTTAGGTGTTCTTTTGAGTGTTAGGTTCTTCTGAGAAAATTCAATTGAAGATGAAAGCAAGTCAGATAAAAATGAGCAGTGTAATATATGTTCTCGTAAAGTAACATCTGAGTTGTGAATATATTTTAGTTTGCAATCCGAGTCTGAGGAATATGTTTTGGTTTTAACTATTACTCCAGAATGATTATGGAGTTCTATTAAGCTAAAGGCACGACTTGGATCAATCTAAACCAGGGTTATGTTTTTCTTAAGAGGCTGTTCCATTGTTCCAAATTTTAAAGCTGTAAACAACAAATATTTCATTATCCGAAATAGGACCTGGATCCGCCTTGCTATTTCTCGCTTCTTTACTAGTCATAGTTATGTGCTTACTTCAGGAAAAGGGAGGATTGAGGAGAAGAGAAAGGGGTATGATGGATGGTTGATTTTGAATATTTGTACTTTTGTTCATGTTGGTTGGGGCATGAGTGAAAGAGAAGTAAATGAGCTTGTCTCACTTTCCCAGTCTAATCTAAAGAGATTAAATAGGATTAGCTGGAATTGCAAAGTCCCCTCATTTTTTCAATATTAAATAGGATTAGCTGGAGTTGCAAAGTTCCCTCATTTTCGATTGGACGATTCCTAACCTAACCTCTTCGTGCTCCAAGTCTCCAACATCTTGTGAAAGCATGTTTTGGATACACATTAACCCTGCTGGTTTCCAAAATTAATATACGACAACTTTGCCTGAACTTCAAGCGAGTTGGGTTAGCTGTATGAGTGTTTTATGTTTCTTTCCCTCTGCTTGGTTAAGTTAATTCCATTACTCAAACTTAGAAATAATCAAAATTCAGGGGTTATCTGAACCTAAACATTTCTAAATCTGAAACTTATCTTTGCACTTACAATTGAAAAGGCTCTTAATGTCAAAGATAACGTAAGTGCACTAACACGACAAAGTAATCCTTATTAATCTCATACTTTCACTTTTAGTCCACCCCAAAAGGAATAAAAACTAACTTTTTTCATTTTTACCCTAAATGGATGATTTATAGCTACACAAATATTGAAGATTTATTTTAGACCACATATTTCAAAAATCTTTCCTTTTTTTTTTGATGAAGTAAATGTTTCATTGAAGGCATCAAGAAGATGCAAATTAGTTACATAAGTAGAGTCTTTCCTTTATTTCTTTAACTTCATTTCAAGTCAAACGGTGCCACATAAATTGGAACAGAGAGAGTAGTTGGTATCACATATGCAAATCTTTTGCTTTTGTATGTTCTGCTGATTGTGTTCGGTCATGTGCTATTCTATTTGAGAGACCGCGACCATTTCTAATAACTTCCCCTATGAAATTTTATGCTGCCACTTTTCTCCTTTAATGTATCAAAATCATAGTGTGGCAACTAGAGGTCCGTGCATTTGGAAGATATACCAACCTTTTCTTGCTTTATCCTCTACGTGTGTTAGATATAGTTGCTTTGGAATGTAATCATTTCTAAGCTAATCTTTATCTTAGTGACTATACATCCATTTTAACATCCTCAAGTCTTACTTTGTCTCAGTAGTAGCTTGGTATTGAGTTTTCATTGATAAGATACTTATAATTATAAAAAAAATTCATTGACAATTTTCTTGTGGATATGGTCTGCTCTCTTTTACAACATTTCTGGTTCCATCATCATTTTAATGAACTTGTCTTCATTTTGGTAGGTATCTACCTAGCACATATTACTCTCGTAACACTGTCATATTTAGCAATCCTACTTTAGTTTTATATATAAAGCATTCTCATGGAATATTGAACATATATATCTAGATATGTATTTCGACACCATAATATTGTCTAATCTTACCTCAATTTTTTTTTATTGAGCTAAACTTGCAGTTTTTATTGTATACTAAAGCCCTAAGGGGTAGTTTGGAACGCGATTTAGTTATATGGGGATTGTACTGTGAAGATTATGATGTTCTGATTAAATAATAATGCTTAGTAGTCAATCAAGTGTATTGAGAAGCATGATGTCTTAGTTTCAAATCTCCTCAGAGACAAAATACACTAGGTAATTTCTTCCCATTTGTTCTAGAATTGGTGGATAAAGTTATCTAGCACATACCCTTCTGGATGACCCAGTGGTTCGAGCTTAGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGTGAAAGCAAGTGGTTTGCCTTCTGGGCCGAGCTCGTCGCACCAGGCTTGCCTAGTGCAGGTTATCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCTGTTGTCATCAAAAAAAAGTTATCTAGTAAATGATGTTGTTGGGAGGTGACATGTATCCCACAAAATTAGTCGAGGTGCGTGAAGTTGGCCCGGAGTAATGTTAGTATTGGTACTTATGGAGTTGAGGTTTAGAGGAATATTAGAAACATGTGGCCCAAATTAGAGGCTAATTTGTACATACAGGTGGGAGATGGTAGGTGAGCGAAATTCTGGGGAGTTGCTGGGATAAATAGATACCTTTGATGGACGATCTGTTCATGCTATGCAATAACCTAGAGGCAAAGATCAAGAACTGCTGGATAATACAGGGGCAGAATCTTTCCTTCAGCAGATTCTACTGAACGATTGAGATGTAGAGAGAGCAGCCAAACTGCTAGTAGAAACAGGGAATTCCCCGGCACCAACTGTTCCTGATTCAGCGATGGTTACAGACTTACAGTTTACACAATGAAGATGACACTTTCACTATCAATAGGGCCTATAAAATAGAAAACAATCAAAATAGAAGAAACAACAAAGATTTTGGTTGTGGAGACACTTAGCACCAACCAAGATAAAATGTTTTACATGATTGGTTGCTAGAAGGGACTGCCTGACCCATGAAGTCCTGAAGAAGATAAGAGCCAGCAAAGTTTGTGGAGGAAGGTGTGGAGAAACTTAGCACCAAGCCACCAACCAAGTTAAAATGTTTTACATGGCTGGTTGCTAGAAGAGTCTAGTATCTTGGTGTTCGTTATATGGGAAGATAAAAGAGACCAATAACCACTTATTGTTGCGTTACGGTTTCACAACACATTTAACAGGCTTGGGCCATATTTCTCAACCTCACAAACAAAGTGGACTATGCCTGAACACACACAGACCTGTTGAGTTGCTGGATTAGAAAAGGGGGCAATAAGAGACAGAAGGCACGGTGGAGACTAATCCCACATTGCATATGGTGGACGATATCGAGAGAGGAAAAGTAGAAATTTTGACGATAAATTCAATTCCGTTAATAAGGTTAACTGGAACTGCATTGTTTCTCCCTATTTTTGGTGTAAAGAAATAGGTTGAGAGGAAACAAAACAACTTTTAGAATTCTTAGGATCTCTATTAGTATTACTTTCTCTGTTCCTACTTTTGAAGGTCCTCAGCATTAAGGAAGAATACAACATTACCATTTGCAGGAACAAAGAAAAGAGTGTGTATTAGCAATTAAGAGAGAAAATTTGAAGTATAAAAATGCCCCTAAATTAGGCAAACCCCTACATAACATTATTAATACTCATCACATGAAAGTCTTTACATCACCATTCATTTTATAACAACCCCTTCATTATTTTTCACCAAACAACCATGCATTTTAATTCCCGTGTGACTAGTGTGTGAAGTGAACAACCCCTCACTTTCTTAGCATACTTCTCCAACCTTTGGTTGGCTTTCCGATAATCCATTGTGAATATGATAGGAGCAAATATCTATGAGGTTCTACTTCTGCCTGTTTATTTGAAATGTACTGCGTAAATATGGTTTCCAACATATTATTATTATTTTTATAGTCTTATTAATCTGGTACCAAGCTGGTACAGAAGCAAGTACAAAGCATAACTACATAACTTCCACCAATCACACTAGAACTAGATACTGCCCCCCGAATAAGTACAGCCAAACCAAGTAACGATCCATCCTATTTTAAGTACTGCTAGAACACCATAAGATATATTGTTGATGCATTTCGTTAATGCTGATAAATTGGAAATTCTAAGTTAGCGTTTTCTTCTACTTTAGCCCATTCTACGGAGCACAGTCAGTCGCTTAATGGTCTGCCTGTTTCTTGTTTGATTATCACTGAACTAATGGTGGTCTTATCATATGTAATGGAGGCCATTTCTTTTTCAAGTAGTGATGTAGTTCAGGTCATGCCTTGTCTTTTGCATATGCTCTTGGAGATGTAGTTAAACAGAGGTCTTCTCAGCTTCCATAATTAGCTTGTACATTTTGATAATATATGATTGCTTTAGTAAACTTTCATTAGTGCAATTGATTAGTAGTATTGACTGTCTTATTTTATCTTGTAATCCTTCACCAACACGGAAACAACCTCCTCTATTCACCCCACCCTCCCTAGACCCTGCTTGTGGGATTAATGAATCCTTTACCAGTGAAAACTAAGTTACAGGGGTGTGTGGTGAATATTGACAAAATTTGCAAAGCAAATATTTCTTGTGTTTTAACTACTTTCAGTGGTTGACATCACTACTATTGCAACTTATAGGTCTCAAGTTTCCATTATTTTTCCATGTGAAAATAATCTTCTGTTGAATCTTTTTTACTTTTTGATCAATGGGGCATGCAAATTTTATTATTGTTTTTCTGCTAACGCTGATGGCTTCTTAATTAAAACGTTGCTAATTTCAATTCTTCAAATAAGTATAATTTGTGTGGCTGATAAGTGATTAAAGATTATATGTCAGCACTAACCACATGGTAATTGATGTTATGTGGAGATCACTTATGTTTGTTTTCAGTTATGTTTCAAGTTTGATGCATATGGAAATATGGATATGATCAACACTTTGAATGTTACCTTGTCAAAAATAAATAAATGATCAAATTTTGTGTGTTTTATATTGTAGGAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAGGTAAGTTTCCATTATTTATTTGACAAGTCTCCATCATACATTAATTCCTTTAGTCAGTTGACTTCAATCTTTAGTTGGTTTCTAGTCATGTCCTCTTTCATTTTCTATTCTAATTCAACAGAAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTG</genome_strand>
        <mrna_strand>TGAGTCAACCTTGGCCGAAGCCGCCGGCCAGTGGCACCCTTATTTGCCATTTCATTTCCACAAAAAAGAGAAGATACAGAGCGTTGATAAGAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG................................................................................................................................................................................AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA..........................................................................................................GGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAG.........................................................................................................................AAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379449" ref_strand="+" ref_description="SGN-E379449 [TUS-1-B11]">
      <seq>gagtcaaccttggccgaagccgccggccagtggcacccttatttgccatttcatttccacaaaaaagagaagatacagagcgttgataagaacaagtctccatctatatacacacacaggggctgacctgagatccaactgaacacacactatgtcgagaaaactctcttcgcacctccgaaccctacacctacttcgatctactcccaaaaccaattcattcgccgccgccgccgccgccaccacctccgtatcttcttctcaatctccggcagccttccgttcgtcggtcactttcttccctcgccacttcagtaccgtatcagagaatgttgttaagaaagtggaggatgtaatgccgattgcaactggtcatgagcgtgaggagcttgaagctgagctccaaggaagggatattcttgacattaactttcctgaaggtccttttggtacaaaggaagcgcctgctgttgtcaaatcctactatgatagaagagttgtaggatgccctggagatgaaggagaagatgagcatgatgttgtttggttctggctcgagaagggcaagccacatgaatgcccagtatgctcacagtattttgtgttggaagtggttggacctggaggacctcctgatggacatggcagtgatgatgagggtcatcattgatagtccgtcttgcaattttttgtcggaataaatttggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="54979" stop="63702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55279" g_stop="55604" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55781" g_stop="55860" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="406" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55967" g_stop="56017" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="457" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61189" g_stop="61255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="524" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61256" i_stop="61376" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61377" g_stop="61456" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="604" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61457" i_stop="63298" i_length="1842">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63299" g_stop="63404" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="710" r_length="106" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E379449" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55279" e_stop="55604"/>
          <exon e_start="55781" e_stop="55860"/>
          <exon e_start="55967" e_stop="56017"/>
          <exon e_start="61189" e_stop="61255"/>
          <exon e_start="61377" e_stop="61456"/>
          <exon e_start="63299" e_stop="63404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCAACCTTGGCCGAAGCCGCCGGCCAGTGGCACCCTTATTTGCCATTTCATTTCCACAAAAAAGAGAAGATACAGAGCGTTGATAAGAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAGGTATCCTTTCGCATTTCTCTCTCTACTCTCAACCCTAATTTAATCAGATCTTACGAGTTTGAATAGAGTGACTTGATTGATTTATTGTACTTGCGTTATTTGATATTTTTTTCTAGTTGGTTCCTTTTTTGTTTATGTGATGAGTATGCATTTTTTGTTGTTGTTGTGTGGAGTAGAGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAAGTGAGTTATCACCATGTTTTACTAATTTAGCGTTGAGATATTACGTGTACTAATTCAAATGTTATTGATAGTGACTGAAAATTACATTTGTTGTGTTTCTCTTTAGGGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAGGTTAGTGTGGAACTGTGGGTTTCCTAGTAACTTTTGGTGCTAATAGGCATTAGTTATTGCCCCTTTTGCTTTAGTCATCATTATTGTTGATCACTAAATTGTTTTGTCTTTTATCCAGATTAGTTATTCTCATCTGATGCATAACGATTACTATATCATGTGATTGGTCATTCTCTTATTGACAGGGATAATGAGTAATGAGCAATCATTGGAAATGTTTGGAAGTAGTTGTTTTTAGGTGTTCTTTTGAGTGTTAGGTTCTTCTGAGAAAATTCAATTGAAGATGAAAGCAAGTCAGATAAAAATGAGCAGTGTAATATATGTTCTCGTAAAGTAACATCTGAGTTGTGAATATATTTTAGTTTGCAATCCGAGTCTGAGGAATATGTTTTGGTTTTAACTATTACTCCAGAATGATTATGGAGTTCTATTAAGCTAAAGGCACGACTTGGATCAATCTAAACCAGGGTTATGTTTTTCTTAAGAGGCTGTTCCATTGTTCCAAATTTTAAAGCTGTAAACAACAAATATTTCATTATCCGAAATAGGACCTGGATCCGCCTTGCTATTTCTCGCTTCTTTACTAGTCATAGTTATGTGCTTACTTCAGGAAAAGGGAGGATTGAGGAGAAGAGAAAGGGGTATGATGGATGGTTGATTTTGAATATTTGTACTTTTGTTCATGTTGGTTGGGGCATGAGTGAAAGAGAAGTAAATGAGCTTGTCTCACTTTCCCAGTCTAATCTAAAGAGATTAAATAGGATTAGCTGGAATTGCAAAGTCCCCTCATTTTTTCAATATTAAATAGGATTAGCTGGAGTTGCAAAGTTCCCTCATTTTCGATTGGACGATTCCTAACCTAACCTCTTCGTGCTCCAAGTCTCCAACATCTTGTGAAAGCATGTTTTGGATACACATTAACCCTGCTGGTTTCCAAAATTAATATACGACAACTTTGCCTGAACTTCAAGCGAGTTGGGTTAGCTGTATGAGTGTTTTATGTTTCTTTCCCTCTGCTTGGTTAAGTTAATTCCATTACTCAAACTTAGAAATAATCAAAATTCAGGGGTTATCTGAACCTAAACATTTCTAAATCTGAAACTTATCTTTGCACTTACAATTGAAAAGGCTCTTAATGTCAAAGATAACGTAAGTGCACTAACACGACAAAGTAATCCTTATTAATCTCATACTTTCACTTTTAGTCCACCCCAAAAGGAATAAAAACTAACTTTTTTCATTTTTACCCTAAATGGATGATTTATAGCTACACAAATATTGAAGATTTATTTTAGACCACATATTTCAAAAATCTTTCCTTTTTTTTTTGATGAAGTAAATGTTTCATTGAAGGCATCAAGAAGATGCAAATTAGTTACATAAGTAGAGTCTTTCCTTTATTTCTTTAACTTCATTTCAAGTCAAACGGTGCCACATAAATTGGAACAGAGAGAGTAGTTGGTATCACATATGCAAATCTTTTGCTTTTGTATGTTCTGCTGATTGTGTTCGGTCATGTGCTATTCTATTTGAGAGACCGCGACCATTTCTAATAACTTCCCCTATGAAATTTTATGCTGCCACTTTTCTCCTTTAATGTATCAAAATCATAGTGTGGCAACTAGAGGTCCGTGCATTTGGAAGATATACCAACCTTTTCTTGCTTTATCCTCTACGTGTGTTAGATATAGTTGCTTTGGAATGTAATCATTTCTAAGCTAATCTTTATCTTAGTGACTATACATCCATTTTAACATCCTCAAGTCTTACTTTGTCTCAGTAGTAGCTTGGTATTGAGTTTTCATTGATAAGATACTTATAATTATAAAAAAAATTCATTGACAATTTTCTTGTGGATATGGTCTGCTCTCTTTTACAACATTTCTGGTTCCATCATCATTTTAATGAACTTGTCTTCATTTTGGTAGGTATCTACCTAGCACATATTACTCTCGTAACACTGTCATATTTAGCAATCCTACTTTAGTTTTATATATAAAGCATTCTCATGGAATATTGAACATATATATCTAGATATGTATTTCGACACCATAATATTGTCTAATCTTACCTCAATTTTTTTTTATTGAGCTAAACTTGCAGTTTTTATTGTATACTAAAGCCCTAAGGGGTAGTTTGGAACGCGATTTAGTTATATGGGGATTGTACTGTGAAGATTATGATGTTCTGATTAAATAATAATGCTTAGTAGTCAATCAAGTGTATTGAGAAGCATGATGTCTTAGTTTCAAATCTCCTCAGAGACAAAATACACTAGGTAATTTCTTCCCATTTGTTCTAGAATTGGTGGATAAAGTTATCTAGCACATACCCTTCTGGATGACCCAGTGGTTCGAGCTTAGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGTGAAAGCAAGTGGTTTGCCTTCTGGGCCGAGCTCGTCGCACCAGGCTTGCCTAGTGCAGGTTATCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCTGTTGTCATCAAAAAAAAGTTATCTAGTAAATGATGTTGTTGGGAGGTGACATGTATCCCACAAAATTAGTCGAGGTGCGTGAAGTTGGCCCGGAGTAATGTTAGTATTGGTACTTATGGAGTTGAGGTTTAGAGGAATATTAGAAACATGTGGCCCAAATTAGAGGCTAATTTGTACATACAGGTGGGAGATGGTAGGTGAGCGAAATTCTGGGGAGTTGCTGGGATAAATAGATACCTTTGATGGACGATCTGTTCATGCTATGCAATAACCTAGAGGCAAAGATCAAGAACTGCTGGATAATACAGGGGCAGAATCTTTCCTTCAGCAGATTCTACTGAACGATTGAGATGTAGAGAGAGCAGCCAAACTGCTAGTAGAAACAGGGAATTCCCCGGCACCAACTGTTCCTGATTCAGCGATGGTTACAGACTTACAGTTTACACAATGAAGATGACACTTTCACTATCAATAGGGCCTATAAAATAGAAAACAATCAAAATAGAAGAAACAACAAAGATTTTGGTTGTGGAGACACTTAGCACCAACCAAGATAAAATGTTTTACATGATTGGTTGCTAGAAGGGACTGCCTGACCCATGAAGTCCTGAAGAAGATAAGAGCCAGCAAAGTTTGTGGAGGAAGGTGTGGAGAAACTTAGCACCAAGCCACCAACCAAGTTAAAATGTTTTACATGGCTGGTTGCTAGAAGAGTCTAGTATCTTGGTGTTCGTTATATGGGAAGATAAAAGAGACCAATAACCACTTATTGTTGCGTTACGGTTTCACAACACATTTAACAGGCTTGGGCCATATTTCTCAACCTCACAAACAAAGTGGACTATGCCTGAACACACACAGACCTGTTGAGTTGCTGGATTAGAAAAGGGGGCAATAAGAGACAGAAGGCACGGTGGAGACTAATCCCACATTGCATATGGTGGACGATATCGAGAGAGGAAAAGTAGAAATTTTGACGATAAATTCAATTCCGTTAATAAGGTTAACTGGAACTGCATTGTTTCTCCCTATTTTTGGTGTAAAGAAATAGGTTGAGAGGAAACAAAACAACTTTTAGAATTCTTAGGATCTCTATTAGTATTACTTTCTCTGTTCCTACTTTTGAAGGTCCTCAGCATTAAGGAAGAATACAACATTACCATTTGCAGGAACAAAGAAAAGAGTGTGTATTAGCAATTAAGAGAGAAAATTTGAAGTATAAAAATGCCCCTAAATTAGGCAAACCCCTACATAACATTATTAATACTCATCACATGAAAGTCTTTACATCACCATTCATTTTATAACAACCCCTTCATTATTTTTCACCAAACAACCATGCATTTTAATTCCCGTGTGACTAGTGTGTGAAGTGAACAACCCCTCACTTTCTTAGCATACTTCTCCAACCTTTGGTTGGCTTTCCGATAATCCATTGTGAATATGATAGGAGCAAATATCTATGAGGTTCTACTTCTGCCTGTTTATTTGAAATGTACTGCGTAAATATGGTTTCCAACATATTATTATTATTTTTATAGTCTTATTAATCTGGTACCAAGCTGGTACAGAAGCAAGTACAAAGCATAACTACATAACTTCCACCAATCACACTAGAACTAGATACTGCCCCCCGAATAAGTACAGCCAAACCAAGTAACGATCCATCCTATTTTAAGTACTGCTAGAACACCATAAGATATATTGTTGATGCATTTCGTTAATGCTGATAAATTGGAAATTCTAAGTTAGCGTTTTCTTCTACTTTAGCCCATTCTACGGAGCACAGTCAGTCGCTTAATGGTCTGCCTGTTTCTTGTTTGATTATCACTGAACTAATGGTGGTCTTATCATATGTAATGGAGGCCATTTCTTTTTCAAGTAGTGATGTAGTTCAGGTCATGCCTTGTCTTTTGCATATGCTCTTGGAGATGTAGTTAAACAGAGGTCTTCTCAGCTTCCATAATTAGCTTGTACATTTTGATAATATATGATTGCTTTAGTAAACTTTCATTAGTGCAATTGATTAGTAGTATTGACTGTCTTATTTTATCTTGTAATCCTTCACCAACACGGAAACAACCTCCTCTATTCACCCCACCCTCCCTAGACCCTGCTTGTGGGATTAATGAATCCTTTACCAGTGAAAACTAAGTTACAGGGGTGTGTGGTGAATATTGACAAAATTTGCAAAGCAAATATTTCTTGTGTTTTAACTACTTTCAGTGGTTGACATCACTACTATTGCAACTTATAGGTCTCAAGTTTCCATTATTTTTCCATGTGAAAATAATCTTCTGTTGAATCTTTTTTACTTTTTGATCAATGGGGCATGCAAATTTTATTATTGTTTTTCTGCTAACGCTGATGGCTTCTTAATTAAAACGTTGCTAATTTCAATTCTTCAAATAAGTATAATTTGTGTGGCTGATAAGTGATTAAAGATTATATGTCAGCACTAACCACATGGTAATTGATGTTATGTGGAGATCACTTATGTTTGTTTTCAGTTATGTTTCAAGTTTGATGCATATGGAAATATGGATATGATCAACACTTTGAATGTTACCTTGTCAAAAATAAATAAATGATCAAATTTTGTGTGTTTTATATTGTAGGAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAGGTAAGTTTCCATTATTTATTTGACAAGTCTCCATCATACATTAATTCCTTTAGTCAGTTGACTTCAATCTTTAGTTGGTTTCTAGTCATGTCCTCTTTCATTTTCTATTCTAATTCAACAGAAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTGGTAAGTACAGGATATCAATTAATTCATAGTTAGTCCTGTGGTTTGTTATTGATTAAATCTAGGTGAGTTTGTAGGCTGTTGAGGAATTTGCTAGACATGAATCTGTACTCCCTGCTTTTCTAAATCTAGGTTAATTTTGAGGATGTTAGGGAGTTTTGTAGGTATGAATTTGTTGTTGCTGTTGTATATGTCAAAAAAGGCGCATCAACATCTATTAATAAACATTTCTTCAGTTAATAACGAGAATATTTTTTCTTGGGTTGGCTTTTGCTTAGCTGCAAATTACTAATTGTAGTTCTCAATTGTCCAAATGTGGTACTTGCTTAATTCTGATAGAATGCACATATGTGGCAAATGCACACAAGAGGTTCAGTTGTGTTGACAAAATGATGAAAGATGGGGAGCTGGTAGATGATGAGAAAATTATTAATGAACACACTCAAGACTTCTATTAAAGTATTTAGGGAGAATGAAGAAAGGAGATTAAACTGGAAGGATGAAGAACTGAAAAGGCTTCCTGATGAAGACAGAGAGTGGCTGCAAAGATCTTTTACTATGGAAGAACTGGAAGTTGTTATCAGATCTTTTAGAGGAGATAAGGCTCCATGTCCCGATGGGTGTATCTACACTTCTTCCTAAGATGCTGGAGCACAAAAAAAGATGATGTTTAAAGGACTGGAAATTTTCTATCAAAAGGATTATTTTGTTAAAAGTTTAAATGCTACTTTTATTGCTTTGATACCTAAAAGGAAGGGGCGGTTGAGGTGAAAGATTTCAGGCCTATCAACTTCCTTGGCCTGGGAGTGTATAAAATTATTGCTAAACTATTGGCTGAAAGGCTCAAACTGGTAATTGATAAGTTAGTGTCAGGACATCAGGATGCATTTATTAAAGTGAGGCAAATAGTTGATGCAACTTTGGTCGCCAATTTAAGCATTGAGAAACTAATGAAATAAAGAAGAGAGGAGCTGCTTGCAAGCTTGATCTTGAAAAGGCTTACGACCATTTTAACTGGTCATATTTATTAAATATTCGGAAACAAATAGGCGATAAATGGATTGAATGGATTTGTTACTGCAAATCTAGTGTAAAATTCTATATATTGATAAACGGGAGTCCACATGGTTTTTTAACTCTCAAAGAGGCTTGAGGCAAGGGGATCCACTTTCCTCCTATCTGTTTACTCTGGTGATTGAAGCTTTTAGTATGGTGGAGAAGCAAGCTGAAAAGTTGGGCTGGATATAAGACATGAGCTTTCAAAGAAATTGTGTTGATAGGGTTACCTTATCGCACATTCTATATGCTGATAGATGATACTCTTCTTTATCTTAGAGAGATTCTGGAAATTTTGAGGCAGTTATGGTTGAAAGTTAATCTGGCAAAGCGCAGTATTTTCAGCATTAATGCAGATGACCTCTGCCCTTCCATCCCTTGGATAGATTGAGAGGGGCTTTTGTTTTTTCATGTTGTCAAGGAACTAGCGGATATCCTGGGATGTAAGGCGGAAACGTTCCTCACTGTTTCTTTGGGGCTTCCCTGGGGGCGAAAAGGCAATGATCAAAGTATCTGGAATAAGGTGGATACCCTGATTTGGCTGGGCTAGTAACACACACACAAAAAAAAAAAAATCAGTTAAGAATTGTTATAGCTTATAGTATGTTACTGCAGTCAGTACTCAGGTCAGAATTGTGCTGCTTTTTGTTTCTTCTCCTGTATCATCTTGGTACCAATTAATAAAATCTCTACCTAATCAAAAAGAAGAAGAAAGAGAAGATAGAATGGAATTTCAGTTATGTGTTGATCCAAGCAAAATTTGATACTAAATGATTTCTTGTATTGCAGTTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATAGTCCGTCTTGCAATTTTTTGTCGGAATAATTTTGGTGA</genome_strand>
        <mrna_strand>GAGTCAACCTTGGCCGAAGCCGCCGGCCAGTGGCACCCTTATTTGCCATTTCATTTCCACAAAAAAGAGAAGATACAGAGCGTTGATAAGAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG................................................................................................................................................................................AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA..........................................................................................................GGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAG.........................................................................................................................AAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATAGTCCGTCTTGCAATTTTTTGTCGGAATAAATTTGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200739" ref_strand="+" ref_description="SGN-E200739 [cLEC-9-K5]">
      <seq>gagtcaaccttggccgaagccgccggccagtggcacccttatttgccatttcatttccacaaaaaagagaagatacagagcgttgataagaacaagtctccatctatatacacacacaggggctgacctgagatccaactgaacacacactatgtcgagaaaactctcttcgcacctccgaaccctacacctacttcgatctactcccaaaaccaattcattcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="54979" stop="55803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55279" g_stop="55503" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E200739" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55279" e_stop="55503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCAACCTTGGCCGAAGCCGCCGGCCAGTGGCACCCTTATTTGCCATTTCATTTCCACAAAAAAGAGAAGATACAGAGCGTTGATAAGAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGC</genome_strand>
        <mrna_strand>GAGTCAACCTTGGCCGAAGCCGCCGGCCAGTGGCACCCTTATTTGCCATTTCATTTCCACAAAAAAGAGAAGATACAGAGCGTTGATAAGAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267279" ref_strand="+" ref_description="SGN-E267279 [cLEI-4-J10]">
      <seq>aaccttggccgaagccgccggccagtggcacccttatttgccatttcatttgcacaaaaaagagaagatacagagcgttgataagaacaagtctccatctatatacacacacaggggctgacctgagatccaactgaacacacactatgtcgagaaaactctcttcgcacctccgaaccctacacctacttcgatctactcccaaaaccaattcattcgccgccgccgccgccgccaccacctccgtatcttcttctcaatctccggcagccttccgttcgtcggtcactttcttccctcgccacttcagtaccgtatcagagaatgttgttaagaaagtggaggatgtaatgccgattgcaactggtcatgagcgtgaggagcttgaagctgagctccaaggaagggatattcttgacattaactttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="54984" stop="56297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55284" g_stop="55604" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55781" g_stop="55860" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="401" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55967" g_stop="55997" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="432" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E267279" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55284" e_stop="55604"/>
          <exon e_start="55781" e_stop="55860"/>
          <exon e_start="55967" e_stop="55997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTTGGCCGAAGCCGCCGGCCAGTGGCACCCTTATTTGCCATTTCATTTCCACAAAAAAGAGAAGATACAGAGCGTTGATAAGAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAGGTATCCTTTCGCATTTCTCTCTCTACTCTCAACCCTAATTTAATCAGATCTTACGAGTTTGAATAGAGTGACTTGATTGATTTATTGTACTTGCGTTATTTGATATTTTTTTCTAGTTGGTTCCTTTTTTGTTTATGTGATGAGTATGCATTTTTTGTTGTTGTTGTGTGGAGTAGAGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAAGTGAGTTATCACCATGTTTTACTAATTTAGCGTTGAGATATTACGTGTACTAATTCAAATGTTATTGATAGTGACTGAAAATTACATTTGTTGTGTTTCTCTTTAGGGAAGGGATATTCTTGACATTAACTTTCCTG</genome_strand>
        <mrna_strand>AACCTTGGCCGAAGCCGCCGGCCAGTGGCACCCTTATTTGCCATTTCATTTGCACAAAAAAGAGAAGATACAGAGCGTTGATAAGAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG................................................................................................................................................................................AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA..........................................................................................................GGAAGGGATATTCTTGACATTAACTTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266159" ref_strand="+" ref_description="SGN-E266159 [cLEI-6-L16]">
      <seq>ccttatttgccatttcatttccacaaaaaagagaagatacagagcgttgataagaacaagtctccatctatatacacacacaggggctgacctgagatccaactgaacacacactatgtcgagaaaactctcttcgcacctccgaaccctacacctacttcgatctactcccaaaaccaattcattcgccgccgccgccgccgccaccacctccgtatcttcttctcaatctccggcagccttccgttcgtcggtcactttcttccctcgccacttcagtaccgtatcagagaatgttgttaagaaagtggaggatgtaatgccgattgcaactggtcatgagcgtgaggagcttgaagctgagctccaaggaagggatattcttgacattaactttcctgaaggtccttttggtacaaaggaagcgcctgctgttgtcaaatcctactatgatagaagagttgtaggatgccctggagatgaaggagaagatgagcatgatgttgtttggttctggctcgagaagggcaagccacatgaatgcccagtatgctcacagtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55015" stop="61752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55315" g_stop="55604" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55781" g_stop="55860" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="370" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55967" g_stop="56017" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="421" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61189" g_stop="61255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="488" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61256" i_stop="61376" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61377" g_stop="61452" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="564" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E266159" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55315" e_stop="55604"/>
          <exon e_start="55781" e_stop="55860"/>
          <exon e_start="55967" e_stop="56017"/>
          <exon e_start="61189" e_stop="61255"/>
          <exon e_start="61377" e_stop="61452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATTTGCCATTTCATTTCCACAAAAAAGAGAAGATACAGAGCGTTGATAAGAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAGGTATCCTTTCGCATTTCTCTCTCTACTCTCAACCCTAATTTAATCAGATCTTACGAGTTTGAATAGAGTGACTTGATTGATTTATTGTACTTGCGTTATTTGATATTTTTTTCTAGTTGGTTCCTTTTTTGTTTATGTGATGAGTATGCATTTTTTGTTGTTGTTGTGTGGAGTAGAGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAAGTGAGTTATCACCATGTTTTACTAATTTAGCGTTGAGATATTACGTGTACTAATTCAAATGTTATTGATAGTGACTGAAAATTACATTTGTTGTGTTTCTCTTTAGGGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAGGTTAGTGTGGAACTGTGGGTTTCCTAGTAACTTTTGGTGCTAATAGGCATTAGTTATTGCCCCTTTTGCTTTAGTCATCATTATTGTTGATCACTAAATTGTTTTGTCTTTTATCCAGATTAGTTATTCTCATCTGATGCATAACGATTACTATATCATGTGATTGGTCATTCTCTTATTGACAGGGATAATGAGTAATGAGCAATCATTGGAAATGTTTGGAAGTAGTTGTTTTTAGGTGTTCTTTTGAGTGTTAGGTTCTTCTGAGAAAATTCAATTGAAGATGAAAGCAAGTCAGATAAAAATGAGCAGTGTAATATATGTTCTCGTAAAGTAACATCTGAGTTGTGAATATATTTTAGTTTGCAATCCGAGTCTGAGGAATATGTTTTGGTTTTAACTATTACTCCAGAATGATTATGGAGTTCTATTAAGCTAAAGGCACGACTTGGATCAATCTAAACCAGGGTTATGTTTTTCTTAAGAGGCTGTTCCATTGTTCCAAATTTTAAAGCTGTAAACAACAAATATTTCATTATCCGAAATAGGACCTGGATCCGCCTTGCTATTTCTCGCTTCTTTACTAGTCATAGTTATGTGCTTACTTCAGGAAAAGGGAGGATTGAGGAGAAGAGAAAGGGGTATGATGGATGGTTGATTTTGAATATTTGTACTTTTGTTCATGTTGGTTGGGGCATGAGTGAAAGAGAAGTAAATGAGCTTGTCTCACTTTCCCAGTCTAATCTAAAGAGATTAAATAGGATTAGCTGGAATTGCAAAGTCCCCTCATTTTTTCAATATTAAATAGGATTAGCTGGAGTTGCAAAGTTCCCTCATTTTCGATTGGACGATTCCTAACCTAACCTCTTCGTGCTCCAAGTCTCCAACATCTTGTGAAAGCATGTTTTGGATACACATTAACCCTGCTGGTTTCCAAAATTAATATACGACAACTTTGCCTGAACTTCAAGCGAGTTGGGTTAGCTGTATGAGTGTTTTATGTTTCTTTCCCTCTGCTTGGTTAAGTTAATTCCATTACTCAAACTTAGAAATAATCAAAATTCAGGGGTTATCTGAACCTAAACATTTCTAAATCTGAAACTTATCTTTGCACTTACAATTGAAAAGGCTCTTAATGTCAAAGATAACGTAAGTGCACTAACACGACAAAGTAATCCTTATTAATCTCATACTTTCACTTTTAGTCCACCCCAAAAGGAATAAAAACTAACTTTTTTCATTTTTACCCTAAATGGATGATTTATAGCTACACAAATATTGAAGATTTATTTTAGACCACATATTTCAAAAATCTTTCCTTTTTTTTTTGATGAAGTAAATGTTTCATTGAAGGCATCAAGAAGATGCAAATTAGTTACATAAGTAGAGTCTTTCCTTTATTTCTTTAACTTCATTTCAAGTCAAACGGTGCCACATAAATTGGAACAGAGAGAGTAGTTGGTATCACATATGCAAATCTTTTGCTTTTGTATGTTCTGCTGATTGTGTTCGGTCATGTGCTATTCTATTTGAGAGACCGCGACCATTTCTAATAACTTCCCCTATGAAATTTTATGCTGCCACTTTTCTCCTTTAATGTATCAAAATCATAGTGTGGCAACTAGAGGTCCGTGCATTTGGAAGATATACCAACCTTTTCTTGCTTTATCCTCTACGTGTGTTAGATATAGTTGCTTTGGAATGTAATCATTTCTAAGCTAATCTTTATCTTAGTGACTATACATCCATTTTAACATCCTCAAGTCTTACTTTGTCTCAGTAGTAGCTTGGTATTGAGTTTTCATTGATAAGATACTTATAATTATAAAAAAAATTCATTGACAATTTTCTTGTGGATATGGTCTGCTCTCTTTTACAACATTTCTGGTTCCATCATCATTTTAATGAACTTGTCTTCATTTTGGTAGGTATCTACCTAGCACATATTACTCTCGTAACACTGTCATATTTAGCAATCCTACTTTAGTTTTATATATAAAGCATTCTCATGGAATATTGAACATATATATCTAGATATGTATTTCGACACCATAATATTGTCTAATCTTACCTCAATTTTTTTTTATTGAGCTAAACTTGCAGTTTTTATTGTATACTAAAGCCCTAAGGGGTAGTTTGGAACGCGATTTAGTTATATGGGGATTGTACTGTGAAGATTATGATGTTCTGATTAAATAATAATGCTTAGTAGTCAATCAAGTGTATTGAGAAGCATGATGTCTTAGTTTCAAATCTCCTCAGAGACAAAATACACTAGGTAATTTCTTCCCATTTGTTCTAGAATTGGTGGATAAAGTTATCTAGCACATACCCTTCTGGATGACCCAGTGGTTCGAGCTTAGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGTGAAAGCAAGTGGTTTGCCTTCTGGGCCGAGCTCGTCGCACCAGGCTTGCCTAGTGCAGGTTATCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCTGTTGTCATCAAAAAAAAGTTATCTAGTAAATGATGTTGTTGGGAGGTGACATGTATCCCACAAAATTAGTCGAGGTGCGTGAAGTTGGCCCGGAGTAATGTTAGTATTGGTACTTATGGAGTTGAGGTTTAGAGGAATATTAGAAACATGTGGCCCAAATTAGAGGCTAATTTGTACATACAGGTGGGAGATGGTAGGTGAGCGAAATTCTGGGGAGTTGCTGGGATAAATAGATACCTTTGATGGACGATCTGTTCATGCTATGCAATAACCTAGAGGCAAAGATCAAGAACTGCTGGATAATACAGGGGCAGAATCTTTCCTTCAGCAGATTCTACTGAACGATTGAGATGTAGAGAGAGCAGCCAAACTGCTAGTAGAAACAGGGAATTCCCCGGCACCAACTGTTCCTGATTCAGCGATGGTTACAGACTTACAGTTTACACAATGAAGATGACACTTTCACTATCAATAGGGCCTATAAAATAGAAAACAATCAAAATAGAAGAAACAACAAAGATTTTGGTTGTGGAGACACTTAGCACCAACCAAGATAAAATGTTTTACATGATTGGTTGCTAGAAGGGACTGCCTGACCCATGAAGTCCTGAAGAAGATAAGAGCCAGCAAAGTTTGTGGAGGAAGGTGTGGAGAAACTTAGCACCAAGCCACCAACCAAGTTAAAATGTTTTACATGGCTGGTTGCTAGAAGAGTCTAGTATCTTGGTGTTCGTTATATGGGAAGATAAAAGAGACCAATAACCACTTATTGTTGCGTTACGGTTTCACAACACATTTAACAGGCTTGGGCCATATTTCTCAACCTCACAAACAAAGTGGACTATGCCTGAACACACACAGACCTGTTGAGTTGCTGGATTAGAAAAGGGGGCAATAAGAGACAGAAGGCACGGTGGAGACTAATCCCACATTGCATATGGTGGACGATATCGAGAGAGGAAAAGTAGAAATTTTGACGATAAATTCAATTCCGTTAATAAGGTTAACTGGAACTGCATTGTTTCTCCCTATTTTTGGTGTAAAGAAATAGGTTGAGAGGAAACAAAACAACTTTTAGAATTCTTAGGATCTCTATTAGTATTACTTTCTCTGTTCCTACTTTTGAAGGTCCTCAGCATTAAGGAAGAATACAACATTACCATTTGCAGGAACAAAGAAAAGAGTGTGTATTAGCAATTAAGAGAGAAAATTTGAAGTATAAAAATGCCCCTAAATTAGGCAAACCCCTACATAACATTATTAATACTCATCACATGAAAGTCTTTACATCACCATTCATTTTATAACAACCCCTTCATTATTTTTCACCAAACAACCATGCATTTTAATTCCCGTGTGACTAGTGTGTGAAGTGAACAACCCCTCACTTTCTTAGCATACTTCTCCAACCTTTGGTTGGCTTTCCGATAATCCATTGTGAATATGATAGGAGCAAATATCTATGAGGTTCTACTTCTGCCTGTTTATTTGAAATGTACTGCGTAAATATGGTTTCCAACATATTATTATTATTTTTATAGTCTTATTAATCTGGTACCAAGCTGGTACAGAAGCAAGTACAAAGCATAACTACATAACTTCCACCAATCACACTAGAACTAGATACTGCCCCCCGAATAAGTACAGCCAAACCAAGTAACGATCCATCCTATTTTAAGTACTGCTAGAACACCATAAGATATATTGTTGATGCATTTCGTTAATGCTGATAAATTGGAAATTCTAAGTTAGCGTTTTCTTCTACTTTAGCCCATTCTACGGAGCACAGTCAGTCGCTTAATGGTCTGCCTGTTTCTTGTTTGATTATCACTGAACTAATGGTGGTCTTATCATATGTAATGGAGGCCATTTCTTTTTCAAGTAGTGATGTAGTTCAGGTCATGCCTTGTCTTTTGCATATGCTCTTGGAGATGTAGTTAAACAGAGGTCTTCTCAGCTTCCATAATTAGCTTGTACATTTTGATAATATATGATTGCTTTAGTAAACTTTCATTAGTGCAATTGATTAGTAGTATTGACTGTCTTATTTTATCTTGTAATCCTTCACCAACACGGAAACAACCTCCTCTATTCACCCCACCCTCCCTAGACCCTGCTTGTGGGATTAATGAATCCTTTACCAGTGAAAACTAAGTTACAGGGGTGTGTGGTGAATATTGACAAAATTTGCAAAGCAAATATTTCTTGTGTTTTAACTACTTTCAGTGGTTGACATCACTACTATTGCAACTTATAGGTCTCAAGTTTCCATTATTTTTCCATGTGAAAATAATCTTCTGTTGAATCTTTTTTACTTTTTGATCAATGGGGCATGCAAATTTTATTATTGTTTTTCTGCTAACGCTGATGGCTTCTTAATTAAAACGTTGCTAATTTCAATTCTTCAAATAAGTATAATTTGTGTGGCTGATAAGTGATTAAAGATTATATGTCAGCACTAACCACATGGTAATTGATGTTATGTGGAGATCACTTATGTTTGTTTTCAGTTATGTTTCAAGTTTGATGCATATGGAAATATGGATATGATCAACACTTTGAATGTTACCTTGTCAAAAATAAATAAATGATCAAATTTTGTGTGTTTTATATTGTAGGAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAGGTAAGTTTCCATTATTTATTTGACAAGTCTCCATCATACATTAATTCCTTTAGTCAGTTGACTTCAATCTTTAGTTGGTTTCTAGTCATGTCCTCTTTCATTTTCTATTCTAATTCAACAGAAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTT</genome_strand>
        <mrna_strand>CCTTATTTGCCATTTCATTTCCACAAAAAAGAGAAGATACAGAGCGTTGATAAGAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG................................................................................................................................................................................AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA..........................................................................................................GGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAG.........................................................................................................................AAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712445" ref_strand="+" ref_description="SGN-E712445 [FB04DE05]">
      <seq>aagagaagatacagagcgttgataagaacaagtctccatctatatacacacacaggggctgacctgagatccaactgaacacacactatgtcgagaaaactctcttcgcacctccgaaccctacacctacttcgatctactcccaaaaccaattcattcgccgccgccgccgccgccaccacctccgtatcttcttctcaatctccggcagccttccgttcgtcggtcactttcttccctcgccacttcagtaccgtatcagagaatgttgttaagaaagtggaggatgtaatgccgattgcaactggtcatgagcgtgaggagcttgaagctgagctccaaggaagggatattcttgacattaactttcctgaaggtccttttggtacaaaggaagcgcctgctgttgtcaaatcctactatgatagaagagttgtaggatgccctggagatgaaggagaagatgagcatgatgttgtttggttctggctcgagaagggcaagccacatgaatgcccagtatgctcacagtattttgtgttggaagtggttggacctggaggacctcctgatggacatggcagtgatgatgagggtcatcattgatagtccgtcttgcaattttttgtcggaataaatttggttgagacaatgagagattactcgttttataaactgatgattcaaagctgtgttctttctttgcctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55043" stop="86405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55343" g_stop="55604" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55781" g_stop="55860" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="342" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55967" g_stop="56017" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="393" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61189" g_stop="61255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="460" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61256" i_stop="61376" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61377" g_stop="61456" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="540" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61457" i_stop="63298" i_length="1842">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63299" g_stop="63466" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="707" r_length="167" r_score="0.905"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63467" i_stop="63546" i_length="80">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63547" g_stop="63566" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="727" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E712445" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55343" e_stop="55604"/>
          <exon e_start="55781" e_stop="55860"/>
          <exon e_start="55967" e_stop="56017"/>
          <exon e_start="61189" e_stop="61255"/>
          <exon e_start="61377" e_stop="61456"/>
          <exon e_start="63299" e_stop="63466"/>
          <exon e_start="63547" e_stop="63566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAGATACAGAGCGTTGATAAGAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAGGTATCCTTTCGCATTTCTCTCTCTACTCTCAACCCTAATTTAATCAGATCTTACGAGTTTGAATAGAGTGACTTGATTGATTTATTGTACTTGCGTTATTTGATATTTTTTTCTAGTTGGTTCCTTTTTTGTTTATGTGATGAGTATGCATTTTTTGTTGTTGTTGTGTGGAGTAGAGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAAGTGAGTTATCACCATGTTTTACTAATTTAGCGTTGAGATATTACGTGTACTAATTCAAATGTTATTGATAGTGACTGAAAATTACATTTGTTGTGTTTCTCTTTAGGGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAGGTTAGTGTGGAACTGTGGGTTTCCTAGTAACTTTTGGTGCTAATAGGCATTAGTTATTGCCCCTTTTGCTTTAGTCATCATTATTGTTGATCACTAAATTGTTTTGTCTTTTATCCAGATTAGTTATTCTCATCTGATGCATAACGATTACTATATCATGTGATTGGTCATTCTCTTATTGACAGGGATAATGAGTAATGAGCAATCATTGGAAATGTTTGGAAGTAGTTGTTTTTAGGTGTTCTTTTGAGTGTTAGGTTCTTCTGAGAAAATTCAATTGAAGATGAAAGCAAGTCAGATAAAAATGAGCAGTGTAATATATGTTCTCGTAAAGTAACATCTGAGTTGTGAATATATTTTAGTTTGCAATCCGAGTCTGAGGAATATGTTTTGGTTTTAACTATTACTCCAGAATGATTATGGAGTTCTATTAAGCTAAAGGCACGACTTGGATCAATCTAAACCAGGGTTATGTTTTTCTTAAGAGGCTGTTCCATTGTTCCAAATTTTAAAGCTGTAAACAACAAATATTTCATTATCCGAAATAGGACCTGGATCCGCCTTGCTATTTCTCGCTTCTTTACTAGTCATAGTTATGTGCTTACTTCAGGAAAAGGGAGGATTGAGGAGAAGAGAAAGGGGTATGATGGATGGTTGATTTTGAATATTTGTACTTTTGTTCATGTTGGTTGGGGCATGAGTGAAAGAGAAGTAAATGAGCTTGTCTCACTTTCCCAGTCTAATCTAAAGAGATTAAATAGGATTAGCTGGAATTGCAAAGTCCCCTCATTTTTTCAATATTAAATAGGATTAGCTGGAGTTGCAAAGTTCCCTCATTTTCGATTGGACGATTCCTAACCTAACCTCTTCGTGCTCCAAGTCTCCAACATCTTGTGAAAGCATGTTTTGGATACACATTAACCCTGCTGGTTTCCAAAATTAATATACGACAACTTTGCCTGAACTTCAAGCGAGTTGGGTTAGCTGTATGAGTGTTTTATGTTTCTTTCCCTCTGCTTGGTTAAGTTAATTCCATTACTCAAACTTAGAAATAATCAAAATTCAGGGGTTATCTGAACCTAAACATTTCTAAATCTGAAACTTATCTTTGCACTTACAATTGAAAAGGCTCTTAATGTCAAAGATAACGTAAGTGCACTAACACGACAAAGTAATCCTTATTAATCTCATACTTTCACTTTTAGTCCACCCCAAAAGGAATAAAAACTAACTTTTTTCATTTTTACCCTAAATGGATGATTTATAGCTACACAAATATTGAAGATTTATTTTAGACCACATATTTCAAAAATCTTTCCTTTTTTTTTTGATGAAGTAAATGTTTCATTGAAGGCATCAAGAAGATGCAAATTAGTTACATAAGTAGAGTCTTTCCTTTATTTCTTTAACTTCATTTCAAGTCAAACGGTGCCACATAAATTGGAACAGAGAGAGTAGTTGGTATCACATATGCAAATCTTTTGCTTTTGTATGTTCTGCTGATTGTGTTCGGTCATGTGCTATTCTATTTGAGAGACCGCGACCATTTCTAATAACTTCCCCTATGAAATTTTATGCTGCCACTTTTCTCCTTTAATGTATCAAAATCATAGTGTGGCAACTAGAGGTCCGTGCATTTGGAAGATATACCAACCTTTTCTTGCTTTATCCTCTACGTGTGTTAGATATAGTTGCTTTGGAATGTAATCATTTCTAAGCTAATCTTTATCTTAGTGACTATACATCCATTTTAACATCCTCAAGTCTTACTTTGTCTCAGTAGTAGCTTGGTATTGAGTTTTCATTGATAAGATACTTATAATTATAAAAAAAATTCATTGACAATTTTCTTGTGGATATGGTCTGCTCTCTTTTACAACATTTCTGGTTCCATCATCATTTTAATGAACTTGTCTTCATTTTGGTAGGTATCTACCTAGCACATATTACTCTCGTAACACTGTCATATTTAGCAATCCTACTTTAGTTTTATATATAAAGCATTCTCATGGAATATTGAACATATATATCTAGATATGTATTTCGACACCATAATATTGTCTAATCTTACCTCAATTTTTTTTTATTGAGCTAAACTTGCAGTTTTTATTGTATACTAAAGCCCTAAGGGGTAGTTTGGAACGCGATTTAGTTATATGGGGATTGTACTGTGAAGATTATGATGTTCTGATTAAATAATAATGCTTAGTAGTCAATCAAGTGTATTGAGAAGCATGATGTCTTAGTTTCAAATCTCCTCAGAGACAAAATACACTAGGTAATTTCTTCCCATTTGTTCTAGAATTGGTGGATAAAGTTATCTAGCACATACCCTTCTGGATGACCCAGTGGTTCGAGCTTAGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGTGAAAGCAAGTGGTTTGCCTTCTGGGCCGAGCTCGTCGCACCAGGCTTGCCTAGTGCAGGTTATCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCTGTTGTCATCAAAAAAAAGTTATCTAGTAAATGATGTTGTTGGGAGGTGACATGTATCCCACAAAATTAGTCGAGGTGCGTGAAGTTGGCCCGGAGTAATGTTAGTATTGGTACTTATGGAGTTGAGGTTTAGAGGAATATTAGAAACATGTGGCCCAAATTAGAGGCTAATTTGTACATACAGGTGGGAGATGGTAGGTGAGCGAAATTCTGGGGAGTTGCTGGGATAAATAGATACCTTTGATGGACGATCTGTTCATGCTATGCAATAACCTAGAGGCAAAGATCAAGAACTGCTGGATAATACAGGGGCAGAATCTTTCCTTCAGCAGATTCTACTGAACGATTGAGATGTAGAGAGAGCAGCCAAACTGCTAGTAGAAACAGGGAATTCCCCGGCACCAACTGTTCCTGATTCAGCGATGGTTACAGACTTACAGTTTACACAATGAAGATGACACTTTCACTATCAATAGGGCCTATAAAATAGAAAACAATCAAAATAGAAGAAACAACAAAGATTTTGGTTGTGGAGACACTTAGCACCAACCAAGATAAAATGTTTTACATGATTGGTTGCTAGAAGGGACTGCCTGACCCATGAAGTCCTGAAGAAGATAAGAGCCAGCAAAGTTTGTGGAGGAAGGTGTGGAGAAACTTAGCACCAAGCCACCAACCAAGTTAAAATGTTTTACATGGCTGGTTGCTAGAAGAGTCTAGTATCTTGGTGTTCGTTATATGGGAAGATAAAAGAGACCAATAACCACTTATTGTTGCGTTACGGTTTCACAACACATTTAACAGGCTTGGGCCATATTTCTCAACCTCACAAACAAAGTGGACTATGCCTGAACACACACAGACCTGTTGAGTTGCTGGATTAGAAAAGGGGGCAATAAGAGACAGAAGGCACGGTGGAGACTAATCCCACATTGCATATGGTGGACGATATCGAGAGAGGAAAAGTAGAAATTTTGACGATAAATTCAATTCCGTTAATAAGGTTAACTGGAACTGCATTGTTTCTCCCTATTTTTGGTGTAAAGAAATAGGTTGAGAGGAAACAAAACAACTTTTAGAATTCTTAGGATCTCTATTAGTATTACTTTCTCTGTTCCTACTTTTGAAGGTCCTCAGCATTAAGGAAGAATACAACATTACCATTTGCAGGAACAAAGAAAAGAGTGTGTATTAGCAATTAAGAGAGAAAATTTGAAGTATAAAAATGCCCCTAAATTAGGCAAACCCCTACATAACATTATTAATACTCATCACATGAAAGTCTTTACATCACCATTCATTTTATAACAACCCCTTCATTATTTTTCACCAAACAACCATGCATTTTAATTCCCGTGTGACTAGTGTGTGAAGTGAACAACCCCTCACTTTCTTAGCATACTTCTCCAACCTTTGGTTGGCTTTCCGATAATCCATTGTGAATATGATAGGAGCAAATATCTATGAGGTTCTACTTCTGCCTGTTTATTTGAAATGTACTGCGTAAATATGGTTTCCAACATATTATTATTATTTTTATAGTCTTATTAATCTGGTACCAAGCTGGTACAGAAGCAAGTACAAAGCATAACTACATAACTTCCACCAATCACACTAGAACTAGATACTGCCCCCCGAATAAGTACAGCCAAACCAAGTAACGATCCATCCTATTTTAAGTACTGCTAGAACACCATAAGATATATTGTTGATGCATTTCGTTAATGCTGATAAATTGGAAATTCTAAGTTAGCGTTTTCTTCTACTTTAGCCCATTCTACGGAGCACAGTCAGTCGCTTAATGGTCTGCCTGTTTCTTGTTTGATTATCACTGAACTAATGGTGGTCTTATCATATGTAATGGAGGCCATTTCTTTTTCAAGTAGTGATGTAGTTCAGGTCATGCCTTGTCTTTTGCATATGCTCTTGGAGATGTAGTTAAACAGAGGTCTTCTCAGCTTCCATAATTAGCTTGTACATTTTGATAATATATGATTGCTTTAGTAAACTTTCATTAGTGCAATTGATTAGTAGTATTGACTGTCTTATTTTATCTTGTAATCCTTCACCAACACGGAAACAACCTCCTCTATTCACCCCACCCTCCCTAGACCCTGCTTGTGGGATTAATGAATCCTTTACCAGTGAAAACTAAGTTACAGGGGTGTGTGGTGAATATTGACAAAATTTGCAAAGCAAATATTTCTTGTGTTTTAACTACTTTCAGTGGTTGACATCACTACTATTGCAACTTATAGGTCTCAAGTTTCCATTATTTTTCCATGTGAAAATAATCTTCTGTTGAATCTTTTTTACTTTTTGATCAATGGGGCATGCAAATTTTATTATTGTTTTTCTGCTAACGCTGATGGCTTCTTAATTAAAACGTTGCTAATTTCAATTCTTCAAATAAGTATAATTTGTGTGGCTGATAAGTGATTAAAGATTATATGTCAGCACTAACCACATGGTAATTGATGTTATGTGGAGATCACTTATGTTTGTTTTCAGTTATGTTTCAAGTTTGATGCATATGGAAATATGGATATGATCAACACTTTGAATGTTACCTTGTCAAAAATAAATAAATGATCAAATTTTGTGTGTTTTATATTGTAGGAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAGGTAAGTTTCCATTATTTATTTGACAAGTCTCCATCATACATTAATTCCTTTAGTCAGTTGACTTCAATCTTTAGTTGGTTTCTAGTCATGTCCTCTTTCATTTTCTATTCTAATTCAACAGAAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTGGTAAGTACAGGATATCAATTAATTCATAGTTAGTCCTGTGGTTTGTTATTGATTAAATCTAGGTGAGTTTGTAGGCTGTTGAGGAATTTGCTAGACATGAATCTGTACTCCCTGCTTTTCTAAATCTAGGTTAATTTTGAGGATGTTAGGGAGTTTTGTAGGTATGAATTTGTTGTTGCTGTTGTATATGTCAAAAAAGGCGCATCAACATCTATTAATAAACATTTCTTCAGTTAATAACGAGAATATTTTTTCTTGGGTTGGCTTTTGCTTAGCTGCAAATTACTAATTGTAGTTCTCAATTGTCCAAATGTGGTACTTGCTTAATTCTGATAGAATGCACATATGTGGCAAATGCACACAAGAGGTTCAGTTGTGTTGACAAAATGATGAAAGATGGGGAGCTGGTAGATGATGAGAAAATTATTAATGAACACACTCAAGACTTCTATTAAAGTATTTAGGGAGAATGAAGAAAGGAGATTAAACTGGAAGGATGAAGAACTGAAAAGGCTTCCTGATGAAGACAGAGAGTGGCTGCAAAGATCTTTTACTATGGAAGAACTGGAAGTTGTTATCAGATCTTTTAGAGGAGATAAGGCTCCATGTCCCGATGGGTGTATCTACACTTCTTCCTAAGATGCTGGAGCACAAAAAAAGATGATGTTTAAAGGACTGGAAATTTTCTATCAAAAGGATTATTTTGTTAAAAGTTTAAATGCTACTTTTATTGCTTTGATACCTAAAAGGAAGGGGCGGTTGAGGTGAAAGATTTCAGGCCTATCAACTTCCTTGGCCTGGGAGTGTATAAAATTATTGCTAAACTATTGGCTGAAAGGCTCAAACTGGTAATTGATAAGTTAGTGTCAGGACATCAGGATGCATTTATTAAAGTGAGGCAAATAGTTGATGCAACTTTGGTCGCCAATTTAAGCATTGAGAAACTAATGAAATAAAGAAGAGAGGAGCTGCTTGCAAGCTTGATCTTGAAAAGGCTTACGACCATTTTAACTGGTCATATTTATTAAATATTCGGAAACAAATAGGCGATAAATGGATTGAATGGATTTGTTACTGCAAATCTAGTGTAAAATTCTATATATTGATAAACGGGAGTCCACATGGTTTTTTAACTCTCAAAGAGGCTTGAGGCAAGGGGATCCACTTTCCTCCTATCTGTTTACTCTGGTGATTGAAGCTTTTAGTATGGTGGAGAAGCAAGCTGAAAAGTTGGGCTGGATATAAGACATGAGCTTTCAAAGAAATTGTGTTGATAGGGTTACCTTATCGCACATTCTATATGCTGATAGATGATACTCTTCTTTATCTTAGAGAGATTCTGGAAATTTTGAGGCAGTTATGGTTGAAAGTTAATCTGGCAAAGCGCAGTATTTTCAGCATTAATGCAGATGACCTCTGCCCTTCCATCCCTTGGATAGATTGAGAGGGGCTTTTGTTTTTTCATGTTGTCAAGGAACTAGCGGATATCCTGGGATGTAAGGCGGAAACGTTCCTCACTGTTTCTTTGGGGCTTCCCTGGGGGCGAAAAGGCAATGATCAAAGTATCTGGAATAAGGTGGATACCCTGATTTGGCTGGGCTAGTAACACACACACAAAAAAAAAAAAATCAGTTAAGAATTGTTATAGCTTATAGTATGTTACTGCAGTCAGTACTCAGGTCAGAATTGTGCTGCTTTTTGTTTCTTCTCCTGTATCATCTTGGTACCAATTAATAAAATCTCTACCTAATCAAAAAGAAGAAGAAAGAGAAGATAGAATGGAATTTCAGTTATGTGTTGATCCAAGCAAAATTTGATACTAAATGATTTCTTGTATTGCAGTTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATAGTCCGTCTTGCAATTTTTTGTCGGAATAATTTTGGTGAAAAAAATAGAAAATTCCTCCTTTTATAAACTGAGAATTCCAAAGCTTGGTTCTTTCTTTGCCTTTACCGGATAATTGTTTCTTTTTCTTTTGCTGGGGAAAACCCCGGAAAAAGAAAAAAATTTTTTTCTTTAAAAATTTTTTTTAAAAAAAAAAAAAAACA</genome_strand>
        <mrna_strand>AAGAGAAGATACAGAGCGTTGATAAGAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG................................................................................................................................................................................AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA..........................................................................................................GGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAG.........................................................................................................................AAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATAGTCCGTCTTGCAATTTTTTGTCGGAATAAATTTGGTTGAGACAATGAGAGATTACTCGTTTTATAAACTGATGATT-CAAAGCTGTGTTCTTTCTTTGCC................................................................................TTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298485" ref_strand="+" ref_description="SGN-E298485 [cLET-41-A6]">
      <seq>gaacaagtctccatctatatacacacacaggggctgacctgagatccaactgaacacacactatgtcgagaaaactctcttcgcacctccgaaccctacacctacttcgatctactcccaaaaccaattcattcgccgtcgccgccgccgccaccacctccgtatcttcttctcaatctccggcagccttccgttcgtcggtcactttcttccctcgccacttcagtaccgtatcagagaatgttgttaagaaagtggaggatgtaatgccgattgcaactggtcatgagcgtgaggagcttgaagctgagctccaaggaagggatattcttgacattaactttcctgaaggtccttttggtacaaaggaagcgcctgctgttgtcaaatcctactatgatagaagagttgtcggatgccctggagatgaaggagaagatgagcatgatgttgtttggttctggctcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55068" stop="61711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55368" g_stop="55604" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55781" g_stop="55860" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="317" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55967" g_stop="56017" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="368" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61189" g_stop="61255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="435" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61256" i_stop="61376" i_length="121">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61377" g_stop="61411" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="470" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E298485" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55368" e_stop="55604"/>
          <exon e_start="55781" e_stop="55860"/>
          <exon e_start="55967" e_stop="56017"/>
          <exon e_start="61189" e_stop="61255"/>
          <exon e_start="61377" e_stop="61411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAGGTATCCTTTCGCATTTCTCTCTCTACTCTCAACCCTAATTTAATCAGATCTTACGAGTTTGAATAGAGTGACTTGATTGATTTATTGTACTTGCGTTATTTGATATTTTTTTCTAGTTGGTTCCTTTTTTGTTTATGTGATGAGTATGCATTTTTTGTTGTTGTTGTGTGGAGTAGAGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAAGTGAGTTATCACCATGTTTTACTAATTTAGCGTTGAGATATTACGTGTACTAATTCAAATGTTATTGATAGTGACTGAAAATTACATTTGTTGTGTTTCTCTTTAGGGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAGGTTAGTGTGGAACTGTGGGTTTCCTAGTAACTTTTGGTGCTAATAGGCATTAGTTATTGCCCCTTTTGCTTTAGTCATCATTATTGTTGATCACTAAATTGTTTTGTCTTTTATCCAGATTAGTTATTCTCATCTGATGCATAACGATTACTATATCATGTGATTGGTCATTCTCTTATTGACAGGGATAATGAGTAATGAGCAATCATTGGAAATGTTTGGAAGTAGTTGTTTTTAGGTGTTCTTTTGAGTGTTAGGTTCTTCTGAGAAAATTCAATTGAAGATGAAAGCAAGTCAGATAAAAATGAGCAGTGTAATATATGTTCTCGTAAAGTAACATCTGAGTTGTGAATATATTTTAGTTTGCAATCCGAGTCTGAGGAATATGTTTTGGTTTTAACTATTACTCCAGAATGATTATGGAGTTCTATTAAGCTAAAGGCACGACTTGGATCAATCTAAACCAGGGTTATGTTTTTCTTAAGAGGCTGTTCCATTGTTCCAAATTTTAAAGCTGTAAACAACAAATATTTCATTATCCGAAATAGGACCTGGATCCGCCTTGCTATTTCTCGCTTCTTTACTAGTCATAGTTATGTGCTTACTTCAGGAAAAGGGAGGATTGAGGAGAAGAGAAAGGGGTATGATGGATGGTTGATTTTGAATATTTGTACTTTTGTTCATGTTGGTTGGGGCATGAGTGAAAGAGAAGTAAATGAGCTTGTCTCACTTTCCCAGTCTAATCTAAAGAGATTAAATAGGATTAGCTGGAATTGCAAAGTCCCCTCATTTTTTCAATATTAAATAGGATTAGCTGGAGTTGCAAAGTTCCCTCATTTTCGATTGGACGATTCCTAACCTAACCTCTTCGTGCTCCAAGTCTCCAACATCTTGTGAAAGCATGTTTTGGATACACATTAACCCTGCTGGTTTCCAAAATTAATATACGACAACTTTGCCTGAACTTCAAGCGAGTTGGGTTAGCTGTATGAGTGTTTTATGTTTCTTTCCCTCTGCTTGGTTAAGTTAATTCCATTACTCAAACTTAGAAATAATCAAAATTCAGGGGTTATCTGAACCTAAACATTTCTAAATCTGAAACTTATCTTTGCACTTACAATTGAAAAGGCTCTTAATGTCAAAGATAACGTAAGTGCACTAACACGACAAAGTAATCCTTATTAATCTCATACTTTCACTTTTAGTCCACCCCAAAAGGAATAAAAACTAACTTTTTTCATTTTTACCCTAAATGGATGATTTATAGCTACACAAATATTGAAGATTTATTTTAGACCACATATTTCAAAAATCTTTCCTTTTTTTTTTGATGAAGTAAATGTTTCATTGAAGGCATCAAGAAGATGCAAATTAGTTACATAAGTAGAGTCTTTCCTTTATTTCTTTAACTTCATTTCAAGTCAAACGGTGCCACATAAATTGGAACAGAGAGAGTAGTTGGTATCACATATGCAAATCTTTTGCTTTTGTATGTTCTGCTGATTGTGTTCGGTCATGTGCTATTCTATTTGAGAGACCGCGACCATTTCTAATAACTTCCCCTATGAAATTTTATGCTGCCACTTTTCTCCTTTAATGTATCAAAATCATAGTGTGGCAACTAGAGGTCCGTGCATTTGGAAGATATACCAACCTTTTCTTGCTTTATCCTCTACGTGTGTTAGATATAGTTGCTTTGGAATGTAATCATTTCTAAGCTAATCTTTATCTTAGTGACTATACATCCATTTTAACATCCTCAAGTCTTACTTTGTCTCAGTAGTAGCTTGGTATTGAGTTTTCATTGATAAGATACTTATAATTATAAAAAAAATTCATTGACAATTTTCTTGTGGATATGGTCTGCTCTCTTTTACAACATTTCTGGTTCCATCATCATTTTAATGAACTTGTCTTCATTTTGGTAGGTATCTACCTAGCACATATTACTCTCGTAACACTGTCATATTTAGCAATCCTACTTTAGTTTTATATATAAAGCATTCTCATGGAATATTGAACATATATATCTAGATATGTATTTCGACACCATAATATTGTCTAATCTTACCTCAATTTTTTTTTATTGAGCTAAACTTGCAGTTTTTATTGTATACTAAAGCCCTAAGGGGTAGTTTGGAACGCGATTTAGTTATATGGGGATTGTACTGTGAAGATTATGATGTTCTGATTAAATAATAATGCTTAGTAGTCAATCAAGTGTATTGAGAAGCATGATGTCTTAGTTTCAAATCTCCTCAGAGACAAAATACACTAGGTAATTTCTTCCCATTTGTTCTAGAATTGGTGGATAAAGTTATCTAGCACATACCCTTCTGGATGACCCAGTGGTTCGAGCTTAGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGTGAAAGCAAGTGGTTTGCCTTCTGGGCCGAGCTCGTCGCACCAGGCTTGCCTAGTGCAGGTTATCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCTGTTGTCATCAAAAAAAAGTTATCTAGTAAATGATGTTGTTGGGAGGTGACATGTATCCCACAAAATTAGTCGAGGTGCGTGAAGTTGGCCCGGAGTAATGTTAGTATTGGTACTTATGGAGTTGAGGTTTAGAGGAATATTAGAAACATGTGGCCCAAATTAGAGGCTAATTTGTACATACAGGTGGGAGATGGTAGGTGAGCGAAATTCTGGGGAGTTGCTGGGATAAATAGATACCTTTGATGGACGATCTGTTCATGCTATGCAATAACCTAGAGGCAAAGATCAAGAACTGCTGGATAATACAGGGGCAGAATCTTTCCTTCAGCAGATTCTACTGAACGATTGAGATGTAGAGAGAGCAGCCAAACTGCTAGTAGAAACAGGGAATTCCCCGGCACCAACTGTTCCTGATTCAGCGATGGTTACAGACTTACAGTTTACACAATGAAGATGACACTTTCACTATCAATAGGGCCTATAAAATAGAAAACAATCAAAATAGAAGAAACAACAAAGATTTTGGTTGTGGAGACACTTAGCACCAACCAAGATAAAATGTTTTACATGATTGGTTGCTAGAAGGGACTGCCTGACCCATGAAGTCCTGAAGAAGATAAGAGCCAGCAAAGTTTGTGGAGGAAGGTGTGGAGAAACTTAGCACCAAGCCACCAACCAAGTTAAAATGTTTTACATGGCTGGTTGCTAGAAGAGTCTAGTATCTTGGTGTTCGTTATATGGGAAGATAAAAGAGACCAATAACCACTTATTGTTGCGTTACGGTTTCACAACACATTTAACAGGCTTGGGCCATATTTCTCAACCTCACAAACAAAGTGGACTATGCCTGAACACACACAGACCTGTTGAGTTGCTGGATTAGAAAAGGGGGCAATAAGAGACAGAAGGCACGGTGGAGACTAATCCCACATTGCATATGGTGGACGATATCGAGAGAGGAAAAGTAGAAATTTTGACGATAAATTCAATTCCGTTAATAAGGTTAACTGGAACTGCATTGTTTCTCCCTATTTTTGGTGTAAAGAAATAGGTTGAGAGGAAACAAAACAACTTTTAGAATTCTTAGGATCTCTATTAGTATTACTTTCTCTGTTCCTACTTTTGAAGGTCCTCAGCATTAAGGAAGAATACAACATTACCATTTGCAGGAACAAAGAAAAGAGTGTGTATTAGCAATTAAGAGAGAAAATTTGAAGTATAAAAATGCCCCTAAATTAGGCAAACCCCTACATAACATTATTAATACTCATCACATGAAAGTCTTTACATCACCATTCATTTTATAACAACCCCTTCATTATTTTTCACCAAACAACCATGCATTTTAATTCCCGTGTGACTAGTGTGTGAAGTGAACAACCCCTCACTTTCTTAGCATACTTCTCCAACCTTTGGTTGGCTTTCCGATAATCCATTGTGAATATGATAGGAGCAAATATCTATGAGGTTCTACTTCTGCCTGTTTATTTGAAATGTACTGCGTAAATATGGTTTCCAACATATTATTATTATTTTTATAGTCTTATTAATCTGGTACCAAGCTGGTACAGAAGCAAGTACAAAGCATAACTACATAACTTCCACCAATCACACTAGAACTAGATACTGCCCCCCGAATAAGTACAGCCAAACCAAGTAACGATCCATCCTATTTTAAGTACTGCTAGAACACCATAAGATATATTGTTGATGCATTTCGTTAATGCTGATAAATTGGAAATTCTAAGTTAGCGTTTTCTTCTACTTTAGCCCATTCTACGGAGCACAGTCAGTCGCTTAATGGTCTGCCTGTTTCTTGTTTGATTATCACTGAACTAATGGTGGTCTTATCATATGTAATGGAGGCCATTTCTTTTTCAAGTAGTGATGTAGTTCAGGTCATGCCTTGTCTTTTGCATATGCTCTTGGAGATGTAGTTAAACAGAGGTCTTCTCAGCTTCCATAATTAGCTTGTACATTTTGATAATATATGATTGCTTTAGTAAACTTTCATTAGTGCAATTGATTAGTAGTATTGACTGTCTTATTTTATCTTGTAATCCTTCACCAACACGGAAACAACCTCCTCTATTCACCCCACCCTCCCTAGACCCTGCTTGTGGGATTAATGAATCCTTTACCAGTGAAAACTAAGTTACAGGGGTGTGTGGTGAATATTGACAAAATTTGCAAAGCAAATATTTCTTGTGTTTTAACTACTTTCAGTGGTTGACATCACTACTATTGCAACTTATAGGTCTCAAGTTTCCATTATTTTTCCATGTGAAAATAATCTTCTGTTGAATCTTTTTTACTTTTTGATCAATGGGGCATGCAAATTTTATTATTGTTTTTCTGCTAACGCTGATGGCTTCTTAATTAAAACGTTGCTAATTTCAATTCTTCAAATAAGTATAATTTGTGTGGCTGATAAGTGATTAAAGATTATATGTCAGCACTAACCACATGGTAATTGATGTTATGTGGAGATCACTTATGTTTGTTTTCAGTTATGTTTCAAGTTTGATGCATATGGAAATATGGATATGATCAACACTTTGAATGTTACCTTGTCAAAAATAAATAAATGATCAAATTTTGTGTGTTTTATATTGTAGGAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAGGTAAGTTTCCATTATTTATTTGACAAGTCTCCATCATACATTAATTCCTTTAGTCAGTTGACTTCAATCTTTAGTTGGTTTCTAGTCATGTCCTCTTTCATTTTCTATTCTAATTCAACAGAAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAG</genome_strand>
        <mrna_strand>GAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGTCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG................................................................................................................................................................................AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA..........................................................................................................GGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTCGGATGCCCTGGAGATGAAGGAG.........................................................................................................................AAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311641" ref_strand="+" ref_description="SGN-E311641 [cLEZ-9-M10]">
      <seq>gaacaagtctccatctatatacacacacaggggctgacctgagatccaactgaacacacactatgtcgagaaaactctcttcgcacctccgaaccctacacctacttcgatctactcccaaaaccaattcattcgccgccgccgccgccgccaccacctccgtatcttcttctcaatctccggcagccttccgttcgtcggtcactttcttccctcgccacttcagtaccgtatcagagaatgttgttaagaaagtggaggatgtaatgccgattgcaactggtcatgagcgtgaggagcttgaagctgagctccaaggaagggatattcttgacattaactttcctgaaggtccttttggtacaaaggaagcgcctgctgttgtcaaatcctactatgatagaagagttgtaggatgccctggagatgaaggagaagatgagcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55068" stop="61690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55368" g_stop="55604" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55781" g_stop="55860" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="317" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55967" g_stop="56017" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="368" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61189" g_stop="61255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="435" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61256" i_stop="61376" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61377" g_stop="61390" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="449" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E311641" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55368" e_stop="55604"/>
          <exon e_start="55781" e_stop="55860"/>
          <exon e_start="55967" e_stop="56017"/>
          <exon e_start="61189" e_stop="61255"/>
          <exon e_start="61377" e_stop="61390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAGGTATCCTTTCGCATTTCTCTCTCTACTCTCAACCCTAATTTAATCAGATCTTACGAGTTTGAATAGAGTGACTTGATTGATTTATTGTACTTGCGTTATTTGATATTTTTTTCTAGTTGGTTCCTTTTTTGTTTATGTGATGAGTATGCATTTTTTGTTGTTGTTGTGTGGAGTAGAGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAAGTGAGTTATCACCATGTTTTACTAATTTAGCGTTGAGATATTACGTGTACTAATTCAAATGTTATTGATAGTGACTGAAAATTACATTTGTTGTGTTTCTCTTTAGGGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAGGTTAGTGTGGAACTGTGGGTTTCCTAGTAACTTTTGGTGCTAATAGGCATTAGTTATTGCCCCTTTTGCTTTAGTCATCATTATTGTTGATCACTAAATTGTTTTGTCTTTTATCCAGATTAGTTATTCTCATCTGATGCATAACGATTACTATATCATGTGATTGGTCATTCTCTTATTGACAGGGATAATGAGTAATGAGCAATCATTGGAAATGTTTGGAAGTAGTTGTTTTTAGGTGTTCTTTTGAGTGTTAGGTTCTTCTGAGAAAATTCAATTGAAGATGAAAGCAAGTCAGATAAAAATGAGCAGTGTAATATATGTTCTCGTAAAGTAACATCTGAGTTGTGAATATATTTTAGTTTGCAATCCGAGTCTGAGGAATATGTTTTGGTTTTAACTATTACTCCAGAATGATTATGGAGTTCTATTAAGCTAAAGGCACGACTTGGATCAATCTAAACCAGGGTTATGTTTTTCTTAAGAGGCTGTTCCATTGTTCCAAATTTTAAAGCTGTAAACAACAAATATTTCATTATCCGAAATAGGACCTGGATCCGCCTTGCTATTTCTCGCTTCTTTACTAGTCATAGTTATGTGCTTACTTCAGGAAAAGGGAGGATTGAGGAGAAGAGAAAGGGGTATGATGGATGGTTGATTTTGAATATTTGTACTTTTGTTCATGTTGGTTGGGGCATGAGTGAAAGAGAAGTAAATGAGCTTGTCTCACTTTCCCAGTCTAATCTAAAGAGATTAAATAGGATTAGCTGGAATTGCAAAGTCCCCTCATTTTTTCAATATTAAATAGGATTAGCTGGAGTTGCAAAGTTCCCTCATTTTCGATTGGACGATTCCTAACCTAACCTCTTCGTGCTCCAAGTCTCCAACATCTTGTGAAAGCATGTTTTGGATACACATTAACCCTGCTGGTTTCCAAAATTAATATACGACAACTTTGCCTGAACTTCAAGCGAGTTGGGTTAGCTGTATGAGTGTTTTATGTTTCTTTCCCTCTGCTTGGTTAAGTTAATTCCATTACTCAAACTTAGAAATAATCAAAATTCAGGGGTTATCTGAACCTAAACATTTCTAAATCTGAAACTTATCTTTGCACTTACAATTGAAAAGGCTCTTAATGTCAAAGATAACGTAAGTGCACTAACACGACAAAGTAATCCTTATTAATCTCATACTTTCACTTTTAGTCCACCCCAAAAGGAATAAAAACTAACTTTTTTCATTTTTACCCTAAATGGATGATTTATAGCTACACAAATATTGAAGATTTATTTTAGACCACATATTTCAAAAATCTTTCCTTTTTTTTTTGATGAAGTAAATGTTTCATTGAAGGCATCAAGAAGATGCAAATTAGTTACATAAGTAGAGTCTTTCCTTTATTTCTTTAACTTCATTTCAAGTCAAACGGTGCCACATAAATTGGAACAGAGAGAGTAGTTGGTATCACATATGCAAATCTTTTGCTTTTGTATGTTCTGCTGATTGTGTTCGGTCATGTGCTATTCTATTTGAGAGACCGCGACCATTTCTAATAACTTCCCCTATGAAATTTTATGCTGCCACTTTTCTCCTTTAATGTATCAAAATCATAGTGTGGCAACTAGAGGTCCGTGCATTTGGAAGATATACCAACCTTTTCTTGCTTTATCCTCTACGTGTGTTAGATATAGTTGCTTTGGAATGTAATCATTTCTAAGCTAATCTTTATCTTAGTGACTATACATCCATTTTAACATCCTCAAGTCTTACTTTGTCTCAGTAGTAGCTTGGTATTGAGTTTTCATTGATAAGATACTTATAATTATAAAAAAAATTCATTGACAATTTTCTTGTGGATATGGTCTGCTCTCTTTTACAACATTTCTGGTTCCATCATCATTTTAATGAACTTGTCTTCATTTTGGTAGGTATCTACCTAGCACATATTACTCTCGTAACACTGTCATATTTAGCAATCCTACTTTAGTTTTATATATAAAGCATTCTCATGGAATATTGAACATATATATCTAGATATGTATTTCGACACCATAATATTGTCTAATCTTACCTCAATTTTTTTTTATTGAGCTAAACTTGCAGTTTTTATTGTATACTAAAGCCCTAAGGGGTAGTTTGGAACGCGATTTAGTTATATGGGGATTGTACTGTGAAGATTATGATGTTCTGATTAAATAATAATGCTTAGTAGTCAATCAAGTGTATTGAGAAGCATGATGTCTTAGTTTCAAATCTCCTCAGAGACAAAATACACTAGGTAATTTCTTCCCATTTGTTCTAGAATTGGTGGATAAAGTTATCTAGCACATACCCTTCTGGATGACCCAGTGGTTCGAGCTTAGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGTGAAAGCAAGTGGTTTGCCTTCTGGGCCGAGCTCGTCGCACCAGGCTTGCCTAGTGCAGGTTATCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCTGTTGTCATCAAAAAAAAGTTATCTAGTAAATGATGTTGTTGGGAGGTGACATGTATCCCACAAAATTAGTCGAGGTGCGTGAAGTTGGCCCGGAGTAATGTTAGTATTGGTACTTATGGAGTTGAGGTTTAGAGGAATATTAGAAACATGTGGCCCAAATTAGAGGCTAATTTGTACATACAGGTGGGAGATGGTAGGTGAGCGAAATTCTGGGGAGTTGCTGGGATAAATAGATACCTTTGATGGACGATCTGTTCATGCTATGCAATAACCTAGAGGCAAAGATCAAGAACTGCTGGATAATACAGGGGCAGAATCTTTCCTTCAGCAGATTCTACTGAACGATTGAGATGTAGAGAGAGCAGCCAAACTGCTAGTAGAAACAGGGAATTCCCCGGCACCAACTGTTCCTGATTCAGCGATGGTTACAGACTTACAGTTTACACAATGAAGATGACACTTTCACTATCAATAGGGCCTATAAAATAGAAAACAATCAAAATAGAAGAAACAACAAAGATTTTGGTTGTGGAGACACTTAGCACCAACCAAGATAAAATGTTTTACATGATTGGTTGCTAGAAGGGACTGCCTGACCCATGAAGTCCTGAAGAAGATAAGAGCCAGCAAAGTTTGTGGAGGAAGGTGTGGAGAAACTTAGCACCAAGCCACCAACCAAGTTAAAATGTTTTACATGGCTGGTTGCTAGAAGAGTCTAGTATCTTGGTGTTCGTTATATGGGAAGATAAAAGAGACCAATAACCACTTATTGTTGCGTTACGGTTTCACAACACATTTAACAGGCTTGGGCCATATTTCTCAACCTCACAAACAAAGTGGACTATGCCTGAACACACACAGACCTGTTGAGTTGCTGGATTAGAAAAGGGGGCAATAAGAGACAGAAGGCACGGTGGAGACTAATCCCACATTGCATATGGTGGACGATATCGAGAGAGGAAAAGTAGAAATTTTGACGATAAATTCAATTCCGTTAATAAGGTTAACTGGAACTGCATTGTTTCTCCCTATTTTTGGTGTAAAGAAATAGGTTGAGAGGAAACAAAACAACTTTTAGAATTCTTAGGATCTCTATTAGTATTACTTTCTCTGTTCCTACTTTTGAAGGTCCTCAGCATTAAGGAAGAATACAACATTACCATTTGCAGGAACAAAGAAAAGAGTGTGTATTAGCAATTAAGAGAGAAAATTTGAAGTATAAAAATGCCCCTAAATTAGGCAAACCCCTACATAACATTATTAATACTCATCACATGAAAGTCTTTACATCACCATTCATTTTATAACAACCCCTTCATTATTTTTCACCAAACAACCATGCATTTTAATTCCCGTGTGACTAGTGTGTGAAGTGAACAACCCCTCACTTTCTTAGCATACTTCTCCAACCTTTGGTTGGCTTTCCGATAATCCATTGTGAATATGATAGGAGCAAATATCTATGAGGTTCTACTTCTGCCTGTTTATTTGAAATGTACTGCGTAAATATGGTTTCCAACATATTATTATTATTTTTATAGTCTTATTAATCTGGTACCAAGCTGGTACAGAAGCAAGTACAAAGCATAACTACATAACTTCCACCAATCACACTAGAACTAGATACTGCCCCCCGAATAAGTACAGCCAAACCAAGTAACGATCCATCCTATTTTAAGTACTGCTAGAACACCATAAGATATATTGTTGATGCATTTCGTTAATGCTGATAAATTGGAAATTCTAAGTTAGCGTTTTCTTCTACTTTAGCCCATTCTACGGAGCACAGTCAGTCGCTTAATGGTCTGCCTGTTTCTTGTTTGATTATCACTGAACTAATGGTGGTCTTATCATATGTAATGGAGGCCATTTCTTTTTCAAGTAGTGATGTAGTTCAGGTCATGCCTTGTCTTTTGCATATGCTCTTGGAGATGTAGTTAAACAGAGGTCTTCTCAGCTTCCATAATTAGCTTGTACATTTTGATAATATATGATTGCTTTAGTAAACTTTCATTAGTGCAATTGATTAGTAGTATTGACTGTCTTATTTTATCTTGTAATCCTTCACCAACACGGAAACAACCTCCTCTATTCACCCCACCCTCCCTAGACCCTGCTTGTGGGATTAATGAATCCTTTACCAGTGAAAACTAAGTTACAGGGGTGTGTGGTGAATATTGACAAAATTTGCAAAGCAAATATTTCTTGTGTTTTAACTACTTTCAGTGGTTGACATCACTACTATTGCAACTTATAGGTCTCAAGTTTCCATTATTTTTCCATGTGAAAATAATCTTCTGTTGAATCTTTTTTACTTTTTGATCAATGGGGCATGCAAATTTTATTATTGTTTTTCTGCTAACGCTGATGGCTTCTTAATTAAAACGTTGCTAATTTCAATTCTTCAAATAAGTATAATTTGTGTGGCTGATAAGTGATTAAAGATTATATGTCAGCACTAACCACATGGTAATTGATGTTATGTGGAGATCACTTATGTTTGTTTTCAGTTATGTTTCAAGTTTGATGCATATGGAAATATGGATATGATCAACACTTTGAATGTTACCTTGTCAAAAATAAATAAATGATCAAATTTTGTGTGTTTTATATTGTAGGAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAGGTAAGTTTCCATTATTTATTTGACAAGTCTCCATCATACATTAATTCCTTTAGTCAGTTGACTTCAATCTTTAGTTGGTTTCTAGTCATGTCCTCTTTCATTTTCTATTCTAATTCAACAGAAGATGAGCATGAT</genome_strand>
        <mrna_strand>GAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG................................................................................................................................................................................AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA..........................................................................................................GGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAG.........................................................................................................................AAGATGAGCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372844" ref_strand="+" ref_description="SGN-E372844 [TUS-32-J14]">
      <seq>aacaagtctccatctatatacacacacaggggctgacctgagatccaactgaacacacactatgtcgagaaaactctcttcgcacctccgaaccctacacctacttcgatctactcccaaaaccaattcattcgccgccgccgccgccgccaccacctccgtatcttcttctcaatctccggcagccttccgttcgtcggtcactttcttccctcgccacttcagtaccgtatcagagaatgttgttaagaaagtggaggatgtaatgccgattgcaactggtcatgagcgtgaggagcttgaagctgagctccaaggaagggatattcttgacattaactttcctgaaggtccttttggtacaaaggaagcgcctgctgttgtcaaatcctactatgatagaagagttgtaggatgccctggagatgaaggagaagatgagcatgatgttgtttggttctggctcgagaagggcaagccacatgaatgcccagtatgctcacagtattttgtgttggaagtggttggacctggaggacctcctgatggacatggcagtgatgatgagggtcatcattgatagtccgtcttgcaattttttgtcggaataaatttggttgagacaatgagagattactcgttttataaactgatgattcaaagctgtgttctttctttgcctttactggattattgttcttatgcttgctgtggtagcactgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55069" stop="63793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55369" g_stop="55604" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55781" g_stop="55860" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="316" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55967" g_stop="56017" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="367" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61189" g_stop="61255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="434" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61256" i_stop="61376" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61377" g_stop="61456" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="514" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61457" i_stop="63298" i_length="1842">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63299" g_stop="63480" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="695" r_length="181" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E372844" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55369" e_stop="55604"/>
          <exon e_start="55781" e_stop="55860"/>
          <exon e_start="55967" e_stop="56017"/>
          <exon e_start="61189" e_stop="61255"/>
          <exon e_start="61377" e_stop="61456"/>
          <exon e_start="63299" e_stop="63480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAGGTATCCTTTCGCATTTCTCTCTCTACTCTCAACCCTAATTTAATCAGATCTTACGAGTTTGAATAGAGTGACTTGATTGATTTATTGTACTTGCGTTATTTGATATTTTTTTCTAGTTGGTTCCTTTTTTGTTTATGTGATGAGTATGCATTTTTTGTTGTTGTTGTGTGGAGTAGAGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAAGTGAGTTATCACCATGTTTTACTAATTTAGCGTTGAGATATTACGTGTACTAATTCAAATGTTATTGATAGTGACTGAAAATTACATTTGTTGTGTTTCTCTTTAGGGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAGGTTAGTGTGGAACTGTGGGTTTCCTAGTAACTTTTGGTGCTAATAGGCATTAGTTATTGCCCCTTTTGCTTTAGTCATCATTATTGTTGATCACTAAATTGTTTTGTCTTTTATCCAGATTAGTTATTCTCATCTGATGCATAACGATTACTATATCATGTGATTGGTCATTCTCTTATTGACAGGGATAATGAGTAATGAGCAATCATTGGAAATGTTTGGAAGTAGTTGTTTTTAGGTGTTCTTTTGAGTGTTAGGTTCTTCTGAGAAAATTCAATTGAAGATGAAAGCAAGTCAGATAAAAATGAGCAGTGTAATATATGTTCTCGTAAAGTAACATCTGAGTTGTGAATATATTTTAGTTTGCAATCCGAGTCTGAGGAATATGTTTTGGTTTTAACTATTACTCCAGAATGATTATGGAGTTCTATTAAGCTAAAGGCACGACTTGGATCAATCTAAACCAGGGTTATGTTTTTCTTAAGAGGCTGTTCCATTGTTCCAAATTTTAAAGCTGTAAACAACAAATATTTCATTATCCGAAATAGGACCTGGATCCGCCTTGCTATTTCTCGCTTCTTTACTAGTCATAGTTATGTGCTTACTTCAGGAAAAGGGAGGATTGAGGAGAAGAGAAAGGGGTATGATGGATGGTTGATTTTGAATATTTGTACTTTTGTTCATGTTGGTTGGGGCATGAGTGAAAGAGAAGTAAATGAGCTTGTCTCACTTTCCCAGTCTAATCTAAAGAGATTAAATAGGATTAGCTGGAATTGCAAAGTCCCCTCATTTTTTCAATATTAAATAGGATTAGCTGGAGTTGCAAAGTTCCCTCATTTTCGATTGGACGATTCCTAACCTAACCTCTTCGTGCTCCAAGTCTCCAACATCTTGTGAAAGCATGTTTTGGATACACATTAACCCTGCTGGTTTCCAAAATTAATATACGACAACTTTGCCTGAACTTCAAGCGAGTTGGGTTAGCTGTATGAGTGTTTTATGTTTCTTTCCCTCTGCTTGGTTAAGTTAATTCCATTACTCAAACTTAGAAATAATCAAAATTCAGGGGTTATCTGAACCTAAACATTTCTAAATCTGAAACTTATCTTTGCACTTACAATTGAAAAGGCTCTTAATGTCAAAGATAACGTAAGTGCACTAACACGACAAAGTAATCCTTATTAATCTCATACTTTCACTTTTAGTCCACCCCAAAAGGAATAAAAACTAACTTTTTTCATTTTTACCCTAAATGGATGATTTATAGCTACACAAATATTGAAGATTTATTTTAGACCACATATTTCAAAAATCTTTCCTTTTTTTTTTGATGAAGTAAATGTTTCATTGAAGGCATCAAGAAGATGCAAATTAGTTACATAAGTAGAGTCTTTCCTTTATTTCTTTAACTTCATTTCAAGTCAAACGGTGCCACATAAATTGGAACAGAGAGAGTAGTTGGTATCACATATGCAAATCTTTTGCTTTTGTATGTTCTGCTGATTGTGTTCGGTCATGTGCTATTCTATTTGAGAGACCGCGACCATTTCTAATAACTTCCCCTATGAAATTTTATGCTGCCACTTTTCTCCTTTAATGTATCAAAATCATAGTGTGGCAACTAGAGGTCCGTGCATTTGGAAGATATACCAACCTTTTCTTGCTTTATCCTCTACGTGTGTTAGATATAGTTGCTTTGGAATGTAATCATTTCTAAGCTAATCTTTATCTTAGTGACTATACATCCATTTTAACATCCTCAAGTCTTACTTTGTCTCAGTAGTAGCTTGGTATTGAGTTTTCATTGATAAGATACTTATAATTATAAAAAAAATTCATTGACAATTTTCTTGTGGATATGGTCTGCTCTCTTTTACAACATTTCTGGTTCCATCATCATTTTAATGAACTTGTCTTCATTTTGGTAGGTATCTACCTAGCACATATTACTCTCGTAACACTGTCATATTTAGCAATCCTACTTTAGTTTTATATATAAAGCATTCTCATGGAATATTGAACATATATATCTAGATATGTATTTCGACACCATAATATTGTCTAATCTTACCTCAATTTTTTTTTATTGAGCTAAACTTGCAGTTTTTATTGTATACTAAAGCCCTAAGGGGTAGTTTGGAACGCGATTTAGTTATATGGGGATTGTACTGTGAAGATTATGATGTTCTGATTAAATAATAATGCTTAGTAGTCAATCAAGTGTATTGAGAAGCATGATGTCTTAGTTTCAAATCTCCTCAGAGACAAAATACACTAGGTAATTTCTTCCCATTTGTTCTAGAATTGGTGGATAAAGTTATCTAGCACATACCCTTCTGGATGACCCAGTGGTTCGAGCTTAGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGTGAAAGCAAGTGGTTTGCCTTCTGGGCCGAGCTCGTCGCACCAGGCTTGCCTAGTGCAGGTTATCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCTGTTGTCATCAAAAAAAAGTTATCTAGTAAATGATGTTGTTGGGAGGTGACATGTATCCCACAAAATTAGTCGAGGTGCGTGAAGTTGGCCCGGAGTAATGTTAGTATTGGTACTTATGGAGTTGAGGTTTAGAGGAATATTAGAAACATGTGGCCCAAATTAGAGGCTAATTTGTACATACAGGTGGGAGATGGTAGGTGAGCGAAATTCTGGGGAGTTGCTGGGATAAATAGATACCTTTGATGGACGATCTGTTCATGCTATGCAATAACCTAGAGGCAAAGATCAAGAACTGCTGGATAATACAGGGGCAGAATCTTTCCTTCAGCAGATTCTACTGAACGATTGAGATGTAGAGAGAGCAGCCAAACTGCTAGTAGAAACAGGGAATTCCCCGGCACCAACTGTTCCTGATTCAGCGATGGTTACAGACTTACAGTTTACACAATGAAGATGACACTTTCACTATCAATAGGGCCTATAAAATAGAAAACAATCAAAATAGAAGAAACAACAAAGATTTTGGTTGTGGAGACACTTAGCACCAACCAAGATAAAATGTTTTACATGATTGGTTGCTAGAAGGGACTGCCTGACCCATGAAGTCCTGAAGAAGATAAGAGCCAGCAAAGTTTGTGGAGGAAGGTGTGGAGAAACTTAGCACCAAGCCACCAACCAAGTTAAAATGTTTTACATGGCTGGTTGCTAGAAGAGTCTAGTATCTTGGTGTTCGTTATATGGGAAGATAAAAGAGACCAATAACCACTTATTGTTGCGTTACGGTTTCACAACACATTTAACAGGCTTGGGCCATATTTCTCAACCTCACAAACAAAGTGGACTATGCCTGAACACACACAGACCTGTTGAGTTGCTGGATTAGAAAAGGGGGCAATAAGAGACAGAAGGCACGGTGGAGACTAATCCCACATTGCATATGGTGGACGATATCGAGAGAGGAAAAGTAGAAATTTTGACGATAAATTCAATTCCGTTAATAAGGTTAACTGGAACTGCATTGTTTCTCCCTATTTTTGGTGTAAAGAAATAGGTTGAGAGGAAACAAAACAACTTTTAGAATTCTTAGGATCTCTATTAGTATTACTTTCTCTGTTCCTACTTTTGAAGGTCCTCAGCATTAAGGAAGAATACAACATTACCATTTGCAGGAACAAAGAAAAGAGTGTGTATTAGCAATTAAGAGAGAAAATTTGAAGTATAAAAATGCCCCTAAATTAGGCAAACCCCTACATAACATTATTAATACTCATCACATGAAAGTCTTTACATCACCATTCATTTTATAACAACCCCTTCATTATTTTTCACCAAACAACCATGCATTTTAATTCCCGTGTGACTAGTGTGTGAAGTGAACAACCCCTCACTTTCTTAGCATACTTCTCCAACCTTTGGTTGGCTTTCCGATAATCCATTGTGAATATGATAGGAGCAAATATCTATGAGGTTCTACTTCTGCCTGTTTATTTGAAATGTACTGCGTAAATATGGTTTCCAACATATTATTATTATTTTTATAGTCTTATTAATCTGGTACCAAGCTGGTACAGAAGCAAGTACAAAGCATAACTACATAACTTCCACCAATCACACTAGAACTAGATACTGCCCCCCGAATAAGTACAGCCAAACCAAGTAACGATCCATCCTATTTTAAGTACTGCTAGAACACCATAAGATATATTGTTGATGCATTTCGTTAATGCTGATAAATTGGAAATTCTAAGTTAGCGTTTTCTTCTACTTTAGCCCATTCTACGGAGCACAGTCAGTCGCTTAATGGTCTGCCTGTTTCTTGTTTGATTATCACTGAACTAATGGTGGTCTTATCATATGTAATGGAGGCCATTTCTTTTTCAAGTAGTGATGTAGTTCAGGTCATGCCTTGTCTTTTGCATATGCTCTTGGAGATGTAGTTAAACAGAGGTCTTCTCAGCTTCCATAATTAGCTTGTACATTTTGATAATATATGATTGCTTTAGTAAACTTTCATTAGTGCAATTGATTAGTAGTATTGACTGTCTTATTTTATCTTGTAATCCTTCACCAACACGGAAACAACCTCCTCTATTCACCCCACCCTCCCTAGACCCTGCTTGTGGGATTAATGAATCCTTTACCAGTGAAAACTAAGTTACAGGGGTGTGTGGTGAATATTGACAAAATTTGCAAAGCAAATATTTCTTGTGTTTTAACTACTTTCAGTGGTTGACATCACTACTATTGCAACTTATAGGTCTCAAGTTTCCATTATTTTTCCATGTGAAAATAATCTTCTGTTGAATCTTTTTTACTTTTTGATCAATGGGGCATGCAAATTTTATTATTGTTTTTCTGCTAACGCTGATGGCTTCTTAATTAAAACGTTGCTAATTTCAATTCTTCAAATAAGTATAATTTGTGTGGCTGATAAGTGATTAAAGATTATATGTCAGCACTAACCACATGGTAATTGATGTTATGTGGAGATCACTTATGTTTGTTTTCAGTTATGTTTCAAGTTTGATGCATATGGAAATATGGATATGATCAACACTTTGAATGTTACCTTGTCAAAAATAAATAAATGATCAAATTTTGTGTGTTTTATATTGTAGGAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAGGTAAGTTTCCATTATTTATTTGACAAGTCTCCATCATACATTAATTCCTTTAGTCAGTTGACTTCAATCTTTAGTTGGTTTCTAGTCATGTCCTCTTTCATTTTCTATTCTAATTCAACAGAAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTGGTAAGTACAGGATATCAATTAATTCATAGTTAGTCCTGTGGTTTGTTATTGATTAAATCTAGGTGAGTTTGTAGGCTGTTGAGGAATTTGCTAGACATGAATCTGTACTCCCTGCTTTTCTAAATCTAGGTTAATTTTGAGGATGTTAGGGAGTTTTGTAGGTATGAATTTGTTGTTGCTGTTGTATATGTCAAAAAAGGCGCATCAACATCTATTAATAAACATTTCTTCAGTTAATAACGAGAATATTTTTTCTTGGGTTGGCTTTTGCTTAGCTGCAAATTACTAATTGTAGTTCTCAATTGTCCAAATGTGGTACTTGCTTAATTCTGATAGAATGCACATATGTGGCAAATGCACACAAGAGGTTCAGTTGTGTTGACAAAATGATGAAAGATGGGGAGCTGGTAGATGATGAGAAAATTATTAATGAACACACTCAAGACTTCTATTAAAGTATTTAGGGAGAATGAAGAAAGGAGATTAAACTGGAAGGATGAAGAACTGAAAAGGCTTCCTGATGAAGACAGAGAGTGGCTGCAAAGATCTTTTACTATGGAAGAACTGGAAGTTGTTATCAGATCTTTTAGAGGAGATAAGGCTCCATGTCCCGATGGGTGTATCTACACTTCTTCCTAAGATGCTGGAGCACAAAAAAAGATGATGTTTAAAGGACTGGAAATTTTCTATCAAAAGGATTATTTTGTTAAAAGTTTAAATGCTACTTTTATTGCTTTGATACCTAAAAGGAAGGGGCGGTTGAGGTGAAAGATTTCAGGCCTATCAACTTCCTTGGCCTGGGAGTGTATAAAATTATTGCTAAACTATTGGCTGAAAGGCTCAAACTGGTAATTGATAAGTTAGTGTCAGGACATCAGGATGCATTTATTAAAGTGAGGCAAATAGTTGATGCAACTTTGGTCGCCAATTTAAGCATTGAGAAACTAATGAAATAAAGAAGAGAGGAGCTGCTTGCAAGCTTGATCTTGAAAAGGCTTACGACCATTTTAACTGGTCATATTTATTAAATATTCGGAAACAAATAGGCGATAAATGGATTGAATGGATTTGTTACTGCAAATCTAGTGTAAAATTCTATATATTGATAAACGGGAGTCCACATGGTTTTTTAACTCTCAAAGAGGCTTGAGGCAAGGGGATCCACTTTCCTCCTATCTGTTTACTCTGGTGATTGAAGCTTTTAGTATGGTGGAGAAGCAAGCTGAAAAGTTGGGCTGGATATAAGACATGAGCTTTCAAAGAAATTGTGTTGATAGGGTTACCTTATCGCACATTCTATATGCTGATAGATGATACTCTTCTTTATCTTAGAGAGATTCTGGAAATTTTGAGGCAGTTATGGTTGAAAGTTAATCTGGCAAAGCGCAGTATTTTCAGCATTAATGCAGATGACCTCTGCCCTTCCATCCCTTGGATAGATTGAGAGGGGCTTTTGTTTTTTCATGTTGTCAAGGAACTAGCGGATATCCTGGGATGTAAGGCGGAAACGTTCCTCACTGTTTCTTTGGGGCTTCCCTGGGGGCGAAAAGGCAATGATCAAAGTATCTGGAATAAGGTGGATACCCTGATTTGGCTGGGCTAGTAACACACACACAAAAAAAAAAAAATCAGTTAAGAATTGTTATAGCTTATAGTATGTTACTGCAGTCAGTACTCAGGTCAGAATTGTGCTGCTTTTTGTTTCTTCTCCTGTATCATCTTGGTACCAATTAATAAAATCTCTACCTAATCAAAAAGAAGAAGAAAGAGAAGATAGAATGGAATTTCAGTTATGTGTTGATCCAAGCAAAATTTGATACTAAATGATTTCTTGTATTGCAGTTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATAGTCCGTCTTGCAATTTTTTGTCGGAATAATTTTGGTGAAAAAAATAGAAAATTCCTCCTTTTATAAACTGAGAATTCCAAAGCTTGGTTCTTTCTTTGCCTTTACCGGATAATT</genome_strand>
        <mrna_strand>AACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG................................................................................................................................................................................AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA..........................................................................................................GGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAG.........................................................................................................................AAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATAGTCCGTCTTGCAATTTTTTGTCGGAATAAATTTGGTTGAGACAATGAGAGATTACTCGTTTTATAAACTGATGATT-CAAAGCTGTGTTCTTTCTTTGCCTTTACTGGATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294041" ref_strand="+" ref_description="SGN-E294041 [cLET-13-C21]">
      <seq>aacaagtctccatctatatacacacacaggggctgacctgagatccaactgaacacacactatgtcgagaaaactctcttcgcacctccgaaccctacacctacttcgatctactcccaaaaccaattcattcgccgccgccgccgccgccaccacctccgtatcttcttctcaatctccggcagccttccgttcgtcggtcactttcttccctcgccacttcagtaccgtatcagagaatgttgttaagaaagtggaggatgtaatgccgattgcaactggtcatgagcgtgaggagcttgaagctgagctccaaggaagggatattcttgacattaactgtcctgaaggtccttttggtacaaaggaagcgcctgctgttgtcaaatcctactatgatagaagagttgtaggatgccctggagatgaacgagaagatgagcatgatgttgtttggttctggctcgagaagggcaagccacatgaatgcccagtatgctcacagtattttgtgttggaagtggttggacctggaggacctnctgatggacatggcagtgatgatgagggtcatcattgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55069" stop="63666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55369" g_stop="55604" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55781" g_stop="55860" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="316" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55967" g_stop="56017" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="367" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61189" g_stop="61255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="434" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61256" i_stop="61376" i_length="121">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61377" g_stop="61456" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="514" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61457" i_stop="63298" i_length="1842">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63299" g_stop="63366" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="582" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E294041" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55369" e_stop="55604"/>
          <exon e_start="55781" e_stop="55860"/>
          <exon e_start="55967" e_stop="56017"/>
          <exon e_start="61189" e_stop="61255"/>
          <exon e_start="61377" e_stop="61456"/>
          <exon e_start="63299" e_stop="63366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAGGTATCCTTTCGCATTTCTCTCTCTACTCTCAACCCTAATTTAATCAGATCTTACGAGTTTGAATAGAGTGACTTGATTGATTTATTGTACTTGCGTTATTTGATATTTTTTTCTAGTTGGTTCCTTTTTTGTTTATGTGATGAGTATGCATTTTTTGTTGTTGTTGTGTGGAGTAGAGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAAGTGAGTTATCACCATGTTTTACTAATTTAGCGTTGAGATATTACGTGTACTAATTCAAATGTTATTGATAGTGACTGAAAATTACATTTGTTGTGTTTCTCTTTAGGGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAGGTTAGTGTGGAACTGTGGGTTTCCTAGTAACTTTTGGTGCTAATAGGCATTAGTTATTGCCCCTTTTGCTTTAGTCATCATTATTGTTGATCACTAAATTGTTTTGTCTTTTATCCAGATTAGTTATTCTCATCTGATGCATAACGATTACTATATCATGTGATTGGTCATTCTCTTATTGACAGGGATAATGAGTAATGAGCAATCATTGGAAATGTTTGGAAGTAGTTGTTTTTAGGTGTTCTTTTGAGTGTTAGGTTCTTCTGAGAAAATTCAATTGAAGATGAAAGCAAGTCAGATAAAAATGAGCAGTGTAATATATGTTCTCGTAAAGTAACATCTGAGTTGTGAATATATTTTAGTTTGCAATCCGAGTCTGAGGAATATGTTTTGGTTTTAACTATTACTCCAGAATGATTATGGAGTTCTATTAAGCTAAAGGCACGACTTGGATCAATCTAAACCAGGGTTATGTTTTTCTTAAGAGGCTGTTCCATTGTTCCAAATTTTAAAGCTGTAAACAACAAATATTTCATTATCCGAAATAGGACCTGGATCCGCCTTGCTATTTCTCGCTTCTTTACTAGTCATAGTTATGTGCTTACTTCAGGAAAAGGGAGGATTGAGGAGAAGAGAAAGGGGTATGATGGATGGTTGATTTTGAATATTTGTACTTTTGTTCATGTTGGTTGGGGCATGAGTGAAAGAGAAGTAAATGAGCTTGTCTCACTTTCCCAGTCTAATCTAAAGAGATTAAATAGGATTAGCTGGAATTGCAAAGTCCCCTCATTTTTTCAATATTAAATAGGATTAGCTGGAGTTGCAAAGTTCCCTCATTTTCGATTGGACGATTCCTAACCTAACCTCTTCGTGCTCCAAGTCTCCAACATCTTGTGAAAGCATGTTTTGGATACACATTAACCCTGCTGGTTTCCAAAATTAATATACGACAACTTTGCCTGAACTTCAAGCGAGTTGGGTTAGCTGTATGAGTGTTTTATGTTTCTTTCCCTCTGCTTGGTTAAGTTAATTCCATTACTCAAACTTAGAAATAATCAAAATTCAGGGGTTATCTGAACCTAAACATTTCTAAATCTGAAACTTATCTTTGCACTTACAATTGAAAAGGCTCTTAATGTCAAAGATAACGTAAGTGCACTAACACGACAAAGTAATCCTTATTAATCTCATACTTTCACTTTTAGTCCACCCCAAAAGGAATAAAAACTAACTTTTTTCATTTTTACCCTAAATGGATGATTTATAGCTACACAAATATTGAAGATTTATTTTAGACCACATATTTCAAAAATCTTTCCTTTTTTTTTTGATGAAGTAAATGTTTCATTGAAGGCATCAAGAAGATGCAAATTAGTTACATAAGTAGAGTCTTTCCTTTATTTCTTTAACTTCATTTCAAGTCAAACGGTGCCACATAAATTGGAACAGAGAGAGTAGTTGGTATCACATATGCAAATCTTTTGCTTTTGTATGTTCTGCTGATTGTGTTCGGTCATGTGCTATTCTATTTGAGAGACCGCGACCATTTCTAATAACTTCCCCTATGAAATTTTATGCTGCCACTTTTCTCCTTTAATGTATCAAAATCATAGTGTGGCAACTAGAGGTCCGTGCATTTGGAAGATATACCAACCTTTTCTTGCTTTATCCTCTACGTGTGTTAGATATAGTTGCTTTGGAATGTAATCATTTCTAAGCTAATCTTTATCTTAGTGACTATACATCCATTTTAACATCCTCAAGTCTTACTTTGTCTCAGTAGTAGCTTGGTATTGAGTTTTCATTGATAAGATACTTATAATTATAAAAAAAATTCATTGACAATTTTCTTGTGGATATGGTCTGCTCTCTTTTACAACATTTCTGGTTCCATCATCATTTTAATGAACTTGTCTTCATTTTGGTAGGTATCTACCTAGCACATATTACTCTCGTAACACTGTCATATTTAGCAATCCTACTTTAGTTTTATATATAAAGCATTCTCATGGAATATTGAACATATATATCTAGATATGTATTTCGACACCATAATATTGTCTAATCTTACCTCAATTTTTTTTTATTGAGCTAAACTTGCAGTTTTTATTGTATACTAAAGCCCTAAGGGGTAGTTTGGAACGCGATTTAGTTATATGGGGATTGTACTGTGAAGATTATGATGTTCTGATTAAATAATAATGCTTAGTAGTCAATCAAGTGTATTGAGAAGCATGATGTCTTAGTTTCAAATCTCCTCAGAGACAAAATACACTAGGTAATTTCTTCCCATTTGTTCTAGAATTGGTGGATAAAGTTATCTAGCACATACCCTTCTGGATGACCCAGTGGTTCGAGCTTAGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGTGAAAGCAAGTGGTTTGCCTTCTGGGCCGAGCTCGTCGCACCAGGCTTGCCTAGTGCAGGTTATCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCTGTTGTCATCAAAAAAAAGTTATCTAGTAAATGATGTTGTTGGGAGGTGACATGTATCCCACAAAATTAGTCGAGGTGCGTGAAGTTGGCCCGGAGTAATGTTAGTATTGGTACTTATGGAGTTGAGGTTTAGAGGAATATTAGAAACATGTGGCCCAAATTAGAGGCTAATTTGTACATACAGGTGGGAGATGGTAGGTGAGCGAAATTCTGGGGAGTTGCTGGGATAAATAGATACCTTTGATGGACGATCTGTTCATGCTATGCAATAACCTAGAGGCAAAGATCAAGAACTGCTGGATAATACAGGGGCAGAATCTTTCCTTCAGCAGATTCTACTGAACGATTGAGATGTAGAGAGAGCAGCCAAACTGCTAGTAGAAACAGGGAATTCCCCGGCACCAACTGTTCCTGATTCAGCGATGGTTACAGACTTACAGTTTACACAATGAAGATGACACTTTCACTATCAATAGGGCCTATAAAATAGAAAACAATCAAAATAGAAGAAACAACAAAGATTTTGGTTGTGGAGACACTTAGCACCAACCAAGATAAAATGTTTTACATGATTGGTTGCTAGAAGGGACTGCCTGACCCATGAAGTCCTGAAGAAGATAAGAGCCAGCAAAGTTTGTGGAGGAAGGTGTGGAGAAACTTAGCACCAAGCCACCAACCAAGTTAAAATGTTTTACATGGCTGGTTGCTAGAAGAGTCTAGTATCTTGGTGTTCGTTATATGGGAAGATAAAAGAGACCAATAACCACTTATTGTTGCGTTACGGTTTCACAACACATTTAACAGGCTTGGGCCATATTTCTCAACCTCACAAACAAAGTGGACTATGCCTGAACACACACAGACCTGTTGAGTTGCTGGATTAGAAAAGGGGGCAATAAGAGACAGAAGGCACGGTGGAGACTAATCCCACATTGCATATGGTGGACGATATCGAGAGAGGAAAAGTAGAAATTTTGACGATAAATTCAATTCCGTTAATAAGGTTAACTGGAACTGCATTGTTTCTCCCTATTTTTGGTGTAAAGAAATAGGTTGAGAGGAAACAAAACAACTTTTAGAATTCTTAGGATCTCTATTAGTATTACTTTCTCTGTTCCTACTTTTGAAGGTCCTCAGCATTAAGGAAGAATACAACATTACCATTTGCAGGAACAAAGAAAAGAGTGTGTATTAGCAATTAAGAGAGAAAATTTGAAGTATAAAAATGCCCCTAAATTAGGCAAACCCCTACATAACATTATTAATACTCATCACATGAAAGTCTTTACATCACCATTCATTTTATAACAACCCCTTCATTATTTTTCACCAAACAACCATGCATTTTAATTCCCGTGTGACTAGTGTGTGAAGTGAACAACCCCTCACTTTCTTAGCATACTTCTCCAACCTTTGGTTGGCTTTCCGATAATCCATTGTGAATATGATAGGAGCAAATATCTATGAGGTTCTACTTCTGCCTGTTTATTTGAAATGTACTGCGTAAATATGGTTTCCAACATATTATTATTATTTTTATAGTCTTATTAATCTGGTACCAAGCTGGTACAGAAGCAAGTACAAAGCATAACTACATAACTTCCACCAATCACACTAGAACTAGATACTGCCCCCCGAATAAGTACAGCCAAACCAAGTAACGATCCATCCTATTTTAAGTACTGCTAGAACACCATAAGATATATTGTTGATGCATTTCGTTAATGCTGATAAATTGGAAATTCTAAGTTAGCGTTTTCTTCTACTTTAGCCCATTCTACGGAGCACAGTCAGTCGCTTAATGGTCTGCCTGTTTCTTGTTTGATTATCACTGAACTAATGGTGGTCTTATCATATGTAATGGAGGCCATTTCTTTTTCAAGTAGTGATGTAGTTCAGGTCATGCCTTGTCTTTTGCATATGCTCTTGGAGATGTAGTTAAACAGAGGTCTTCTCAGCTTCCATAATTAGCTTGTACATTTTGATAATATATGATTGCTTTAGTAAACTTTCATTAGTGCAATTGATTAGTAGTATTGACTGTCTTATTTTATCTTGTAATCCTTCACCAACACGGAAACAACCTCCTCTATTCACCCCACCCTCCCTAGACCCTGCTTGTGGGATTAATGAATCCTTTACCAGTGAAAACTAAGTTACAGGGGTGTGTGGTGAATATTGACAAAATTTGCAAAGCAAATATTTCTTGTGTTTTAACTACTTTCAGTGGTTGACATCACTACTATTGCAACTTATAGGTCTCAAGTTTCCATTATTTTTCCATGTGAAAATAATCTTCTGTTGAATCTTTTTTACTTTTTGATCAATGGGGCATGCAAATTTTATTATTGTTTTTCTGCTAACGCTGATGGCTTCTTAATTAAAACGTTGCTAATTTCAATTCTTCAAATAAGTATAATTTGTGTGGCTGATAAGTGATTAAAGATTATATGTCAGCACTAACCACATGGTAATTGATGTTATGTGGAGATCACTTATGTTTGTTTTCAGTTATGTTTCAAGTTTGATGCATATGGAAATATGGATATGATCAACACTTTGAATGTTACCTTGTCAAAAATAAATAAATGATCAAATTTTGTGTGTTTTATATTGTAGGAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAGGTAAGTTTCCATTATTTATTTGACAAGTCTCCATCATACATTAATTCCTTTAGTCAGTTGACTTCAATCTTTAGTTGGTTTCTAGTCATGTCCTCTTTCATTTTCTATTCTAATTCAACAGAAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTGGTAAGTACAGGATATCAATTAATTCATAGTTAGTCCTGTGGTTTGTTATTGATTAAATCTAGGTGAGTTTGTAGGCTGTTGAGGAATTTGCTAGACATGAATCTGTACTCCCTGCTTTTCTAAATCTAGGTTAATTTTGAGGATGTTAGGGAGTTTTGTAGGTATGAATTTGTTGTTGCTGTTGTATATGTCAAAAAAGGCGCATCAACATCTATTAATAAACATTTCTTCAGTTAATAACGAGAATATTTTTTCTTGGGTTGGCTTTTGCTTAGCTGCAAATTACTAATTGTAGTTCTCAATTGTCCAAATGTGGTACTTGCTTAATTCTGATAGAATGCACATATGTGGCAAATGCACACAAGAGGTTCAGTTGTGTTGACAAAATGATGAAAGATGGGGAGCTGGTAGATGATGAGAAAATTATTAATGAACACACTCAAGACTTCTATTAAAGTATTTAGGGAGAATGAAGAAAGGAGATTAAACTGGAAGGATGAAGAACTGAAAAGGCTTCCTGATGAAGACAGAGAGTGGCTGCAAAGATCTTTTACTATGGAAGAACTGGAAGTTGTTATCAGATCTTTTAGAGGAGATAAGGCTCCATGTCCCGATGGGTGTATCTACACTTCTTCCTAAGATGCTGGAGCACAAAAAAAGATGATGTTTAAAGGACTGGAAATTTTCTATCAAAAGGATTATTTTGTTAAAAGTTTAAATGCTACTTTTATTGCTTTGATACCTAAAAGGAAGGGGCGGTTGAGGTGAAAGATTTCAGGCCTATCAACTTCCTTGGCCTGGGAGTGTATAAAATTATTGCTAAACTATTGGCTGAAAGGCTCAAACTGGTAATTGATAAGTTAGTGTCAGGACATCAGGATGCATTTATTAAAGTGAGGCAAATAGTTGATGCAACTTTGGTCGCCAATTTAAGCATTGAGAAACTAATGAAATAAAGAAGAGAGGAGCTGCTTGCAAGCTTGATCTTGAAAAGGCTTACGACCATTTTAACTGGTCATATTTATTAAATATTCGGAAACAAATAGGCGATAAATGGATTGAATGGATTTGTTACTGCAAATCTAGTGTAAAATTCTATATATTGATAAACGGGAGTCCACATGGTTTTTTAACTCTCAAAGAGGCTTGAGGCAAGGGGATCCACTTTCCTCCTATCTGTTTACTCTGGTGATTGAAGCTTTTAGTATGGTGGAGAAGCAAGCTGAAAAGTTGGGCTGGATATAAGACATGAGCTTTCAAAGAAATTGTGTTGATAGGGTTACCTTATCGCACATTCTATATGCTGATAGATGATACTCTTCTTTATCTTAGAGAGATTCTGGAAATTTTGAGGCAGTTATGGTTGAAAGTTAATCTGGCAAAGCGCAGTATTTTCAGCATTAATGCAGATGACCTCTGCCCTTCCATCCCTTGGATAGATTGAGAGGGGCTTTTGTTTTTTCATGTTGTCAAGGAACTAGCGGATATCCTGGGATGTAAGGCGGAAACGTTCCTCACTGTTTCTTTGGGGCTTCCCTGGGGGCGAAAAGGCAATGATCAAAGTATCTGGAATAAGGTGGATACCCTGATTTGGCTGGGCTAGTAACACACACACAAAAAAAAAAAAATCAGTTAAGAATTGTTATAGCTTATAGTATGTTACTGCAGTCAGTACTCAGGTCAGAATTGTGCTGCTTTTTGTTTCTTCTCCTGTATCATCTTGGTACCAATTAATAAAATCTCTACCTAATCAAAAAGAAGAAGAAAGAGAAGATAGAATGGAATTTCAGTTATGTGTTGATCCAAGCAAAATTTGATACTAAATGATTTCTTGTATTGCAGTTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATA</genome_strand>
        <mrna_strand>AACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG................................................................................................................................................................................AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA..........................................................................................................GGAAGGGATATTCTTGACATTAACTGTCCTGAAGGTCCTTTTGGTACAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAACGAG.........................................................................................................................AAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGTGGTTGGACCTGGAGGACCTNCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250452" ref_strand="+" ref_description="SGN-E250452 [cLEG-18-E19]">
      <seq>tctccatctatatacacacacaggggctgacctgagatccaactgaacacacactatgtcgagaaaactctcttcgcacctccgaaccctacacctacttcgatctactcccaaaaccaattcattcgccgccgccgccgccgccaccacctccgtatcttcttctcaatctccggcagccttccgttcgtcggtcactttcttccctcgccacttcagtaccgtatcagagaatgttgttaagaaagtggaggatgtaatgccgattgcaactggtcatgagcgtgaggagcttgaagctgagctccaaggaagggatattcttgacattaactttcctgaaggtccttttggtacaaaggaagcgcctgctgttgtcaaatcctactatgatagaagagttgtaggatgccctggagatgaaggagaagatgagcatgatgttgtttggttctggctcgagaagggcaagccacatgaatgcccagtatgctcacagtattttgtgttggaagtggttggacctggaggacctcctgatggacatggcagtgatgatgagggtcatcattgatagtccgtcttgcaattttttgtcggaataaatttggttgagacaatgagagattactcgttttataaactgatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55075" stop="63742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55375" g_stop="55604" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55781" g_stop="55860" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="310" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55967" g_stop="56017" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="361" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61189" g_stop="61255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="428" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61256" i_stop="61376" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61377" g_stop="61456" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="508" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61457" i_stop="63298" i_length="1842">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63299" g_stop="63442" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="652" r_length="144" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E250452" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55375" e_stop="55604"/>
          <exon e_start="55781" e_stop="55860"/>
          <exon e_start="55967" e_stop="56017"/>
          <exon e_start="61189" e_stop="61255"/>
          <exon e_start="61377" e_stop="61456"/>
          <exon e_start="63299" e_stop="63442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAGGTATCCTTTCGCATTTCTCTCTCTACTCTCAACCCTAATTTAATCAGATCTTACGAGTTTGAATAGAGTGACTTGATTGATTTATTGTACTTGCGTTATTTGATATTTTTTTCTAGTTGGTTCCTTTTTTGTTTATGTGATGAGTATGCATTTTTTGTTGTTGTTGTGTGGAGTAGAGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAAGTGAGTTATCACCATGTTTTACTAATTTAGCGTTGAGATATTACGTGTACTAATTCAAATGTTATTGATAGTGACTGAAAATTACATTTGTTGTGTTTCTCTTTAGGGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAGGTTAGTGTGGAACTGTGGGTTTCCTAGTAACTTTTGGTGCTAATAGGCATTAGTTATTGCCCCTTTTGCTTTAGTCATCATTATTGTTGATCACTAAATTGTTTTGTCTTTTATCCAGATTAGTTATTCTCATCTGATGCATAACGATTACTATATCATGTGATTGGTCATTCTCTTATTGACAGGGATAATGAGTAATGAGCAATCATTGGAAATGTTTGGAAGTAGTTGTTTTTAGGTGTTCTTTTGAGTGTTAGGTTCTTCTGAGAAAATTCAATTGAAGATGAAAGCAAGTCAGATAAAAATGAGCAGTGTAATATATGTTCTCGTAAAGTAACATCTGAGTTGTGAATATATTTTAGTTTGCAATCCGAGTCTGAGGAATATGTTTTGGTTTTAACTATTACTCCAGAATGATTATGGAGTTCTATTAAGCTAAAGGCACGACTTGGATCAATCTAAACCAGGGTTATGTTTTTCTTAAGAGGCTGTTCCATTGTTCCAAATTTTAAAGCTGTAAACAACAAATATTTCATTATCCGAAATAGGACCTGGATCCGCCTTGCTATTTCTCGCTTCTTTACTAGTCATAGTTATGTGCTTACTTCAGGAAAAGGGAGGATTGAGGAGAAGAGAAAGGGGTATGATGGATGGTTGATTTTGAATATTTGTACTTTTGTTCATGTTGGTTGGGGCATGAGTGAAAGAGAAGTAAATGAGCTTGTCTCACTTTCCCAGTCTAATCTAAAGAGATTAAATAGGATTAGCTGGAATTGCAAAGTCCCCTCATTTTTTCAATATTAAATAGGATTAGCTGGAGTTGCAAAGTTCCCTCATTTTCGATTGGACGATTCCTAACCTAACCTCTTCGTGCTCCAAGTCTCCAACATCTTGTGAAAGCATGTTTTGGATACACATTAACCCTGCTGGTTTCCAAAATTAATATACGACAACTTTGCCTGAACTTCAAGCGAGTTGGGTTAGCTGTATGAGTGTTTTATGTTTCTTTCCCTCTGCTTGGTTAAGTTAATTCCATTACTCAAACTTAGAAATAATCAAAATTCAGGGGTTATCTGAACCTAAACATTTCTAAATCTGAAACTTATCTTTGCACTTACAATTGAAAAGGCTCTTAATGTCAAAGATAACGTAAGTGCACTAACACGACAAAGTAATCCTTATTAATCTCATACTTTCACTTTTAGTCCACCCCAAAAGGAATAAAAACTAACTTTTTTCATTTTTACCCTAAATGGATGATTTATAGCTACACAAATATTGAAGATTTATTTTAGACCACATATTTCAAAAATCTTTCCTTTTTTTTTTGATGAAGTAAATGTTTCATTGAAGGCATCAAGAAGATGCAAATTAGTTACATAAGTAGAGTCTTTCCTTTATTTCTTTAACTTCATTTCAAGTCAAACGGTGCCACATAAATTGGAACAGAGAGAGTAGTTGGTATCACATATGCAAATCTTTTGCTTTTGTATGTTCTGCTGATTGTGTTCGGTCATGTGCTATTCTATTTGAGAGACCGCGACCATTTCTAATAACTTCCCCTATGAAATTTTATGCTGCCACTTTTCTCCTTTAATGTATCAAAATCATAGTGTGGCAACTAGAGGTCCGTGCATTTGGAAGATATACCAACCTTTTCTTGCTTTATCCTCTACGTGTGTTAGATATAGTTGCTTTGGAATGTAATCATTTCTAAGCTAATCTTTATCTTAGTGACTATACATCCATTTTAACATCCTCAAGTCTTACTTTGTCTCAGTAGTAGCTTGGTATTGAGTTTTCATTGATAAGATACTTATAATTATAAAAAAAATTCATTGACAATTTTCTTGTGGATATGGTCTGCTCTCTTTTACAACATTTCTGGTTCCATCATCATTTTAATGAACTTGTCTTCATTTTGGTAGGTATCTACCTAGCACATATTACTCTCGTAACACTGTCATATTTAGCAATCCTACTTTAGTTTTATATATAAAGCATTCTCATGGAATATTGAACATATATATCTAGATATGTATTTCGACACCATAATATTGTCTAATCTTACCTCAATTTTTTTTTATTGAGCTAAACTTGCAGTTTTTATTGTATACTAAAGCCCTAAGGGGTAGTTTGGAACGCGATTTAGTTATATGGGGATTGTACTGTGAAGATTATGATGTTCTGATTAAATAATAATGCTTAGTAGTCAATCAAGTGTATTGAGAAGCATGATGTCTTAGTTTCAAATCTCCTCAGAGACAAAATACACTAGGTAATTTCTTCCCATTTGTTCTAGAATTGGTGGATAAAGTTATCTAGCACATACCCTTCTGGATGACCCAGTGGTTCGAGCTTAGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGTGAAAGCAAGTGGTTTGCCTTCTGGGCCGAGCTCGTCGCACCAGGCTTGCCTAGTGCAGGTTATCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCTGTTGTCATCAAAAAAAAGTTATCTAGTAAATGATGTTGTTGGGAGGTGACATGTATCCCACAAAATTAGTCGAGGTGCGTGAAGTTGGCCCGGAGTAATGTTAGTATTGGTACTTATGGAGTTGAGGTTTAGAGGAATATTAGAAACATGTGGCCCAAATTAGAGGCTAATTTGTACATACAGGTGGGAGATGGTAGGTGAGCGAAATTCTGGGGAGTTGCTGGGATAAATAGATACCTTTGATGGACGATCTGTTCATGCTATGCAATAACCTAGAGGCAAAGATCAAGAACTGCTGGATAATACAGGGGCAGAATCTTTCCTTCAGCAGATTCTACTGAACGATTGAGATGTAGAGAGAGCAGCCAAACTGCTAGTAGAAACAGGGAATTCCCCGGCACCAACTGTTCCTGATTCAGCGATGGTTACAGACTTACAGTTTACACAATGAAGATGACACTTTCACTATCAATAGGGCCTATAAAATAGAAAACAATCAAAATAGAAGAAACAACAAAGATTTTGGTTGTGGAGACACTTAGCACCAACCAAGATAAAATGTTTTACATGATTGGTTGCTAGAAGGGACTGCCTGACCCATGAAGTCCTGAAGAAGATAAGAGCCAGCAAAGTTTGTGGAGGAAGGTGTGGAGAAACTTAGCACCAAGCCACCAACCAAGTTAAAATGTTTTACATGGCTGGTTGCTAGAAGAGTCTAGTATCTTGGTGTTCGTTATATGGGAAGATAAAAGAGACCAATAACCACTTATTGTTGCGTTACGGTTTCACAACACATTTAACAGGCTTGGGCCATATTTCTCAACCTCACAAACAAAGTGGACTATGCCTGAACACACACAGACCTGTTGAGTTGCTGGATTAGAAAAGGGGGCAATAAGAGACAGAAGGCACGGTGGAGACTAATCCCACATTGCATATGGTGGACGATATCGAGAGAGGAAAAGTAGAAATTTTGACGATAAATTCAATTCCGTTAATAAGGTTAACTGGAACTGCATTGTTTCTCCCTATTTTTGGTGTAAAGAAATAGGTTGAGAGGAAACAAAACAACTTTTAGAATTCTTAGGATCTCTATTAGTATTACTTTCTCTGTTCCTACTTTTGAAGGTCCTCAGCATTAAGGAAGAATACAACATTACCATTTGCAGGAACAAAGAAAAGAGTGTGTATTAGCAATTAAGAGAGAAAATTTGAAGTATAAAAATGCCCCTAAATTAGGCAAACCCCTACATAACATTATTAATACTCATCACATGAAAGTCTTTACATCACCATTCATTTTATAACAACCCCTTCATTATTTTTCACCAAACAACCATGCATTTTAATTCCCGTGTGACTAGTGTGTGAAGTGAACAACCCCTCACTTTCTTAGCATACTTCTCCAACCTTTGGTTGGCTTTCCGATAATCCATTGTGAATATGATAGGAGCAAATATCTATGAGGTTCTACTTCTGCCTGTTTATTTGAAATGTACTGCGTAAATATGGTTTCCAACATATTATTATTATTTTTATAGTCTTATTAATCTGGTACCAAGCTGGTACAGAAGCAAGTACAAAGCATAACTACATAACTTCCACCAATCACACTAGAACTAGATACTGCCCCCCGAATAAGTACAGCCAAACCAAGTAACGATCCATCCTATTTTAAGTACTGCTAGAACACCATAAGATATATTGTTGATGCATTTCGTTAATGCTGATAAATTGGAAATTCTAAGTTAGCGTTTTCTTCTACTTTAGCCCATTCTACGGAGCACAGTCAGTCGCTTAATGGTCTGCCTGTTTCTTGTTTGATTATCACTGAACTAATGGTGGTCTTATCATATGTAATGGAGGCCATTTCTTTTTCAAGTAGTGATGTAGTTCAGGTCATGCCTTGTCTTTTGCATATGCTCTTGGAGATGTAGTTAAACAGAGGTCTTCTCAGCTTCCATAATTAGCTTGTACATTTTGATAATATATGATTGCTTTAGTAAACTTTCATTAGTGCAATTGATTAGTAGTATTGACTGTCTTATTTTATCTTGTAATCCTTCACCAACACGGAAACAACCTCCTCTATTCACCCCACCCTCCCTAGACCCTGCTTGTGGGATTAATGAATCCTTTACCAGTGAAAACTAAGTTACAGGGGTGTGTGGTGAATATTGACAAAATTTGCAAAGCAAATATTTCTTGTGTTTTAACTACTTTCAGTGGTTGACATCACTACTATTGCAACTTATAGGTCTCAAGTTTCCATTATTTTTCCATGTGAAAATAATCTTCTGTTGAATCTTTTTTACTTTTTGATCAATGGGGCATGCAAATTTTATTATTGTTTTTCTGCTAACGCTGATGGCTTCTTAATTAAAACGTTGCTAATTTCAATTCTTCAAATAAGTATAATTTGTGTGGCTGATAAGTGATTAAAGATTATATGTCAGCACTAACCACATGGTAATTGATGTTATGTGGAGATCACTTATGTTTGTTTTCAGTTATGTTTCAAGTTTGATGCATATGGAAATATGGATATGATCAACACTTTGAATGTTACCTTGTCAAAAATAAATAAATGATCAAATTTTGTGTGTTTTATATTGTAGGAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAGGTAAGTTTCCATTATTTATTTGACAAGTCTCCATCATACATTAATTCCTTTAGTCAGTTGACTTCAATCTTTAGTTGGTTTCTAGTCATGTCCTCTTTCATTTTCTATTCTAATTCAACAGAAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTGGTAAGTACAGGATATCAATTAATTCATAGTTAGTCCTGTGGTTTGTTATTGATTAAATCTAGGTGAGTTTGTAGGCTGTTGAGGAATTTGCTAGACATGAATCTGTACTCCCTGCTTTTCTAAATCTAGGTTAATTTTGAGGATGTTAGGGAGTTTTGTAGGTATGAATTTGTTGTTGCTGTTGTATATGTCAAAAAAGGCGCATCAACATCTATTAATAAACATTTCTTCAGTTAATAACGAGAATATTTTTTCTTGGGTTGGCTTTTGCTTAGCTGCAAATTACTAATTGTAGTTCTCAATTGTCCAAATGTGGTACTTGCTTAATTCTGATAGAATGCACATATGTGGCAAATGCACACAAGAGGTTCAGTTGTGTTGACAAAATGATGAAAGATGGGGAGCTGGTAGATGATGAGAAAATTATTAATGAACACACTCAAGACTTCTATTAAAGTATTTAGGGAGAATGAAGAAAGGAGATTAAACTGGAAGGATGAAGAACTGAAAAGGCTTCCTGATGAAGACAGAGAGTGGCTGCAAAGATCTTTTACTATGGAAGAACTGGAAGTTGTTATCAGATCTTTTAGAGGAGATAAGGCTCCATGTCCCGATGGGTGTATCTACACTTCTTCCTAAGATGCTGGAGCACAAAAAAAGATGATGTTTAAAGGACTGGAAATTTTCTATCAAAAGGATTATTTTGTTAAAAGTTTAAATGCTACTTTTATTGCTTTGATACCTAAAAGGAAGGGGCGGTTGAGGTGAAAGATTTCAGGCCTATCAACTTCCTTGGCCTGGGAGTGTATAAAATTATTGCTAAACTATTGGCTGAAAGGCTCAAACTGGTAATTGATAAGTTAGTGTCAGGACATCAGGATGCATTTATTAAAGTGAGGCAAATAGTTGATGCAACTTTGGTCGCCAATTTAAGCATTGAGAAACTAATGAAATAAAGAAGAGAGGAGCTGCTTGCAAGCTTGATCTTGAAAAGGCTTACGACCATTTTAACTGGTCATATTTATTAAATATTCGGAAACAAATAGGCGATAAATGGATTGAATGGATTTGTTACTGCAAATCTAGTGTAAAATTCTATATATTGATAAACGGGAGTCCACATGGTTTTTTAACTCTCAAAGAGGCTTGAGGCAAGGGGATCCACTTTCCTCCTATCTGTTTACTCTGGTGATTGAAGCTTTTAGTATGGTGGAGAAGCAAGCTGAAAAGTTGGGCTGGATATAAGACATGAGCTTTCAAAGAAATTGTGTTGATAGGGTTACCTTATCGCACATTCTATATGCTGATAGATGATACTCTTCTTTATCTTAGAGAGATTCTGGAAATTTTGAGGCAGTTATGGTTGAAAGTTAATCTGGCAAAGCGCAGTATTTTCAGCATTAATGCAGATGACCTCTGCCCTTCCATCCCTTGGATAGATTGAGAGGGGCTTTTGTTTTTTCATGTTGTCAAGGAACTAGCGGATATCCTGGGATGTAAGGCGGAAACGTTCCTCACTGTTTCTTTGGGGCTTCCCTGGGGGCGAAAAGGCAATGATCAAAGTATCTGGAATAAGGTGGATACCCTGATTTGGCTGGGCTAGTAACACACACACAAAAAAAAAAAAATCAGTTAAGAATTGTTATAGCTTATAGTATGTTACTGCAGTCAGTACTCAGGTCAGAATTGTGCTGCTTTTTGTTTCTTCTCCTGTATCATCTTGGTACCAATTAATAAAATCTCTACCTAATCAAAAAGAAGAAGAAAGAGAAGATAGAATGGAATTTCAGTTATGTGTTGATCCAAGCAAAATTTGATACTAAATGATTTCTTGTATTGCAGTTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATAGTCCGTCTTGCAATTTTTTGTCGGAATAATTTTGGTGAAAAAAATAGAAAATTCCTCCTTTTATAAACTGAGAATT</genome_strand>
        <mrna_strand>TCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG................................................................................................................................................................................AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA..........................................................................................................GGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAG.........................................................................................................................AAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATAGTCCGTCTTGCAATTTTTTGTCGGAATAAATTTGGTTGAGACAATGAGAGATTACTCGTTTTATAAACTGATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303091" ref_strand="+" ref_description="SGN-E303091 [cLEX-5-A21]">
      <seq>tgagatccaactgaacacacactatgtcgagaaaactctcttcgcacctccgaaccctacacctacttcgatctactcccaaaaccaattcattcgccgccgccgccgccgccaccacctccgtatcttcttctcaatctccggcagccttccgttcgtcggtcactttcttccctcgccacttcagtaccgtatcagagaatgttgttaagaaagtggaggatgtaatgccgattgcaactggtcatgagcgtgaggagcttgaagctgagctccaaggaagggatattcttgacattaactttcctgaaggtccttttggtacaaaggaagcgcctgctgttgtcaaatcctactatgatagaagagttgtaggatgccctggagatgaaggagaagatgagcatgatgttgtttggttctggctcgagaagggcaagccacatgaatgcccagtatgctcacagtattttgtgttggaagtggttggacctggaggacctcctgatggacatggcagtgatgatgagggtcatcattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55107" stop="63665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55407" g_stop="55604" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55781" g_stop="55860" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="278" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55967" g_stop="56017" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="329" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61189" g_stop="61255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="396" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61256" i_stop="61376" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61377" g_stop="61456" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="476" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61457" i_stop="63298" i_length="1842">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63299" g_stop="63365" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="543" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E303091" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55407" e_stop="55604"/>
          <exon e_start="55781" e_stop="55860"/>
          <exon e_start="55967" e_stop="56017"/>
          <exon e_start="61189" e_stop="61255"/>
          <exon e_start="61377" e_stop="61456"/>
          <exon e_start="63299" e_stop="63365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAGGTATCCTTTCGCATTTCTCTCTCTACTCTCAACCCTAATTTAATCAGATCTTACGAGTTTGAATAGAGTGACTTGATTGATTTATTGTACTTGCGTTATTTGATATTTTTTTCTAGTTGGTTCCTTTTTTGTTTATGTGATGAGTATGCATTTTTTGTTGTTGTTGTGTGGAGTAGAGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAAGTGAGTTATCACCATGTTTTACTAATTTAGCGTTGAGATATTACGTGTACTAATTCAAATGTTATTGATAGTGACTGAAAATTACATTTGTTGTGTTTCTCTTTAGGGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAGGTTAGTGTGGAACTGTGGGTTTCCTAGTAACTTTTGGTGCTAATAGGCATTAGTTATTGCCCCTTTTGCTTTAGTCATCATTATTGTTGATCACTAAATTGTTTTGTCTTTTATCCAGATTAGTTATTCTCATCTGATGCATAACGATTACTATATCATGTGATTGGTCATTCTCTTATTGACAGGGATAATGAGTAATGAGCAATCATTGGAAATGTTTGGAAGTAGTTGTTTTTAGGTGTTCTTTTGAGTGTTAGGTTCTTCTGAGAAAATTCAATTGAAGATGAAAGCAAGTCAGATAAAAATGAGCAGTGTAATATATGTTCTCGTAAAGTAACATCTGAGTTGTGAATATATTTTAGTTTGCAATCCGAGTCTGAGGAATATGTTTTGGTTTTAACTATTACTCCAGAATGATTATGGAGTTCTATTAAGCTAAAGGCACGACTTGGATCAATCTAAACCAGGGTTATGTTTTTCTTAAGAGGCTGTTCCATTGTTCCAAATTTTAAAGCTGTAAACAACAAATATTTCATTATCCGAAATAGGACCTGGATCCGCCTTGCTATTTCTCGCTTCTTTACTAGTCATAGTTATGTGCTTACTTCAGGAAAAGGGAGGATTGAGGAGAAGAGAAAGGGGTATGATGGATGGTTGATTTTGAATATTTGTACTTTTGTTCATGTTGGTTGGGGCATGAGTGAAAGAGAAGTAAATGAGCTTGTCTCACTTTCCCAGTCTAATCTAAAGAGATTAAATAGGATTAGCTGGAATTGCAAAGTCCCCTCATTTTTTCAATATTAAATAGGATTAGCTGGAGTTGCAAAGTTCCCTCATTTTCGATTGGACGATTCCTAACCTAACCTCTTCGTGCTCCAAGTCTCCAACATCTTGTGAAAGCATGTTTTGGATACACATTAACCCTGCTGGTTTCCAAAATTAATATACGACAACTTTGCCTGAACTTCAAGCGAGTTGGGTTAGCTGTATGAGTGTTTTATGTTTCTTTCCCTCTGCTTGGTTAAGTTAATTCCATTACTCAAACTTAGAAATAATCAAAATTCAGGGGTTATCTGAACCTAAACATTTCTAAATCTGAAACTTATCTTTGCACTTACAATTGAAAAGGCTCTTAATGTCAAAGATAACGTAAGTGCACTAACACGACAAAGTAATCCTTATTAATCTCATACTTTCACTTTTAGTCCACCCCAAAAGGAATAAAAACTAACTTTTTTCATTTTTACCCTAAATGGATGATTTATAGCTACACAAATATTGAAGATTTATTTTAGACCACATATTTCAAAAATCTTTCCTTTTTTTTTTGATGAAGTAAATGTTTCATTGAAGGCATCAAGAAGATGCAAATTAGTTACATAAGTAGAGTCTTTCCTTTATTTCTTTAACTTCATTTCAAGTCAAACGGTGCCACATAAATTGGAACAGAGAGAGTAGTTGGTATCACATATGCAAATCTTTTGCTTTTGTATGTTCTGCTGATTGTGTTCGGTCATGTGCTATTCTATTTGAGAGACCGCGACCATTTCTAATAACTTCCCCTATGAAATTTTATGCTGCCACTTTTCTCCTTTAATGTATCAAAATCATAGTGTGGCAACTAGAGGTCCGTGCATTTGGAAGATATACCAACCTTTTCTTGCTTTATCCTCTACGTGTGTTAGATATAGTTGCTTTGGAATGTAATCATTTCTAAGCTAATCTTTATCTTAGTGACTATACATCCATTTTAACATCCTCAAGTCTTACTTTGTCTCAGTAGTAGCTTGGTATTGAGTTTTCATTGATAAGATACTTATAATTATAAAAAAAATTCATTGACAATTTTCTTGTGGATATGGTCTGCTCTCTTTTACAACATTTCTGGTTCCATCATCATTTTAATGAACTTGTCTTCATTTTGGTAGGTATCTACCTAGCACATATTACTCTCGTAACACTGTCATATTTAGCAATCCTACTTTAGTTTTATATATAAAGCATTCTCATGGAATATTGAACATATATATCTAGATATGTATTTCGACACCATAATATTGTCTAATCTTACCTCAATTTTTTTTTATTGAGCTAAACTTGCAGTTTTTATTGTATACTAAAGCCCTAAGGGGTAGTTTGGAACGCGATTTAGTTATATGGGGATTGTACTGTGAAGATTATGATGTTCTGATTAAATAATAATGCTTAGTAGTCAATCAAGTGTATTGAGAAGCATGATGTCTTAGTTTCAAATCTCCTCAGAGACAAAATACACTAGGTAATTTCTTCCCATTTGTTCTAGAATTGGTGGATAAAGTTATCTAGCACATACCCTTCTGGATGACCCAGTGGTTCGAGCTTAGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGTGAAAGCAAGTGGTTTGCCTTCTGGGCCGAGCTCGTCGCACCAGGCTTGCCTAGTGCAGGTTATCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCTGTTGTCATCAAAAAAAAGTTATCTAGTAAATGATGTTGTTGGGAGGTGACATGTATCCCACAAAATTAGTCGAGGTGCGTGAAGTTGGCCCGGAGTAATGTTAGTATTGGTACTTATGGAGTTGAGGTTTAGAGGAATATTAGAAACATGTGGCCCAAATTAGAGGCTAATTTGTACATACAGGTGGGAGATGGTAGGTGAGCGAAATTCTGGGGAGTTGCTGGGATAAATAGATACCTTTGATGGACGATCTGTTCATGCTATGCAATAACCTAGAGGCAAAGATCAAGAACTGCTGGATAATACAGGGGCAGAATCTTTCCTTCAGCAGATTCTACTGAACGATTGAGATGTAGAGAGAGCAGCCAAACTGCTAGTAGAAACAGGGAATTCCCCGGCACCAACTGTTCCTGATTCAGCGATGGTTACAGACTTACAGTTTACACAATGAAGATGACACTTTCACTATCAATAGGGCCTATAAAATAGAAAACAATCAAAATAGAAGAAACAACAAAGATTTTGGTTGTGGAGACACTTAGCACCAACCAAGATAAAATGTTTTACATGATTGGTTGCTAGAAGGGACTGCCTGACCCATGAAGTCCTGAAGAAGATAAGAGCCAGCAAAGTTTGTGGAGGAAGGTGTGGAGAAACTTAGCACCAAGCCACCAACCAAGTTAAAATGTTTTACATGGCTGGTTGCTAGAAGAGTCTAGTATCTTGGTGTTCGTTATATGGGAAGATAAAAGAGACCAATAACCACTTATTGTTGCGTTACGGTTTCACAACACATTTAACAGGCTTGGGCCATATTTCTCAACCTCACAAACAAAGTGGACTATGCCTGAACACACACAGACCTGTTGAGTTGCTGGATTAGAAAAGGGGGCAATAAGAGACAGAAGGCACGGTGGAGACTAATCCCACATTGCATATGGTGGACGATATCGAGAGAGGAAAAGTAGAAATTTTGACGATAAATTCAATTCCGTTAATAAGGTTAACTGGAACTGCATTGTTTCTCCCTATTTTTGGTGTAAAGAAATAGGTTGAGAGGAAACAAAACAACTTTTAGAATTCTTAGGATCTCTATTAGTATTACTTTCTCTGTTCCTACTTTTGAAGGTCCTCAGCATTAAGGAAGAATACAACATTACCATTTGCAGGAACAAAGAAAAGAGTGTGTATTAGCAATTAAGAGAGAAAATTTGAAGTATAAAAATGCCCCTAAATTAGGCAAACCCCTACATAACATTATTAATACTCATCACATGAAAGTCTTTACATCACCATTCATTTTATAACAACCCCTTCATTATTTTTCACCAAACAACCATGCATTTTAATTCCCGTGTGACTAGTGTGTGAAGTGAACAACCCCTCACTTTCTTAGCATACTTCTCCAACCTTTGGTTGGCTTTCCGATAATCCATTGTGAATATGATAGGAGCAAATATCTATGAGGTTCTACTTCTGCCTGTTTATTTGAAATGTACTGCGTAAATATGGTTTCCAACATATTATTATTATTTTTATAGTCTTATTAATCTGGTACCAAGCTGGTACAGAAGCAAGTACAAAGCATAACTACATAACTTCCACCAATCACACTAGAACTAGATACTGCCCCCCGAATAAGTACAGCCAAACCAAGTAACGATCCATCCTATTTTAAGTACTGCTAGAACACCATAAGATATATTGTTGATGCATTTCGTTAATGCTGATAAATTGGAAATTCTAAGTTAGCGTTTTCTTCTACTTTAGCCCATTCTACGGAGCACAGTCAGTCGCTTAATGGTCTGCCTGTTTCTTGTTTGATTATCACTGAACTAATGGTGGTCTTATCATATGTAATGGAGGCCATTTCTTTTTCAAGTAGTGATGTAGTTCAGGTCATGCCTTGTCTTTTGCATATGCTCTTGGAGATGTAGTTAAACAGAGGTCTTCTCAGCTTCCATAATTAGCTTGTACATTTTGATAATATATGATTGCTTTAGTAAACTTTCATTAGTGCAATTGATTAGTAGTATTGACTGTCTTATTTTATCTTGTAATCCTTCACCAACACGGAAACAACCTCCTCTATTCACCCCACCCTCCCTAGACCCTGCTTGTGGGATTAATGAATCCTTTACCAGTGAAAACTAAGTTACAGGGGTGTGTGGTGAATATTGACAAAATTTGCAAAGCAAATATTTCTTGTGTTTTAACTACTTTCAGTGGTTGACATCACTACTATTGCAACTTATAGGTCTCAAGTTTCCATTATTTTTCCATGTGAAAATAATCTTCTGTTGAATCTTTTTTACTTTTTGATCAATGGGGCATGCAAATTTTATTATTGTTTTTCTGCTAACGCTGATGGCTTCTTAATTAAAACGTTGCTAATTTCAATTCTTCAAATAAGTATAATTTGTGTGGCTGATAAGTGATTAAAGATTATATGTCAGCACTAACCACATGGTAATTGATGTTATGTGGAGATCACTTATGTTTGTTTTCAGTTATGTTTCAAGTTTGATGCATATGGAAATATGGATATGATCAACACTTTGAATGTTACCTTGTCAAAAATAAATAAATGATCAAATTTTGTGTGTTTTATATTGTAGGAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAGGTAAGTTTCCATTATTTATTTGACAAGTCTCCATCATACATTAATTCCTTTAGTCAGTTGACTTCAATCTTTAGTTGGTTTCTAGTCATGTCCTCTTTCATTTTCTATTCTAATTCAACAGAAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTGGTAAGTACAGGATATCAATTAATTCATAGTTAGTCCTGTGGTTTGTTATTGATTAAATCTAGGTGAGTTTGTAGGCTGTTGAGGAATTTGCTAGACATGAATCTGTACTCCCTGCTTTTCTAAATCTAGGTTAATTTTGAGGATGTTAGGGAGTTTTGTAGGTATGAATTTGTTGTTGCTGTTGTATATGTCAAAAAAGGCGCATCAACATCTATTAATAAACATTTCTTCAGTTAATAACGAGAATATTTTTTCTTGGGTTGGCTTTTGCTTAGCTGCAAATTACTAATTGTAGTTCTCAATTGTCCAAATGTGGTACTTGCTTAATTCTGATAGAATGCACATATGTGGCAAATGCACACAAGAGGTTCAGTTGTGTTGACAAAATGATGAAAGATGGGGAGCTGGTAGATGATGAGAAAATTATTAATGAACACACTCAAGACTTCTATTAAAGTATTTAGGGAGAATGAAGAAAGGAGATTAAACTGGAAGGATGAAGAACTGAAAAGGCTTCCTGATGAAGACAGAGAGTGGCTGCAAAGATCTTTTACTATGGAAGAACTGGAAGTTGTTATCAGATCTTTTAGAGGAGATAAGGCTCCATGTCCCGATGGGTGTATCTACACTTCTTCCTAAGATGCTGGAGCACAAAAAAAGATGATGTTTAAAGGACTGGAAATTTTCTATCAAAAGGATTATTTTGTTAAAAGTTTAAATGCTACTTTTATTGCTTTGATACCTAAAAGGAAGGGGCGGTTGAGGTGAAAGATTTCAGGCCTATCAACTTCCTTGGCCTGGGAGTGTATAAAATTATTGCTAAACTATTGGCTGAAAGGCTCAAACTGGTAATTGATAAGTTAGTGTCAGGACATCAGGATGCATTTATTAAAGTGAGGCAAATAGTTGATGCAACTTTGGTCGCCAATTTAAGCATTGAGAAACTAATGAAATAAAGAAGAGAGGAGCTGCTTGCAAGCTTGATCTTGAAAAGGCTTACGACCATTTTAACTGGTCATATTTATTAAATATTCGGAAACAAATAGGCGATAAATGGATTGAATGGATTTGTTACTGCAAATCTAGTGTAAAATTCTATATATTGATAAACGGGAGTCCACATGGTTTTTTAACTCTCAAAGAGGCTTGAGGCAAGGGGATCCACTTTCCTCCTATCTGTTTACTCTGGTGATTGAAGCTTTTAGTATGGTGGAGAAGCAAGCTGAAAAGTTGGGCTGGATATAAGACATGAGCTTTCAAAGAAATTGTGTTGATAGGGTTACCTTATCGCACATTCTATATGCTGATAGATGATACTCTTCTTTATCTTAGAGAGATTCTGGAAATTTTGAGGCAGTTATGGTTGAAAGTTAATCTGGCAAAGCGCAGTATTTTCAGCATTAATGCAGATGACCTCTGCCCTTCCATCCCTTGGATAGATTGAGAGGGGCTTTTGTTTTTTCATGTTGTCAAGGAACTAGCGGATATCCTGGGATGTAAGGCGGAAACGTTCCTCACTGTTTCTTTGGGGCTTCCCTGGGGGCGAAAAGGCAATGATCAAAGTATCTGGAATAAGGTGGATACCCTGATTTGGCTGGGCTAGTAACACACACACAAAAAAAAAAAAATCAGTTAAGAATTGTTATAGCTTATAGTATGTTACTGCAGTCAGTACTCAGGTCAGAATTGTGCTGCTTTTTGTTTCTTCTCCTGTATCATCTTGGTACCAATTAATAAAATCTCTACCTAATCAAAAAGAAGAAGAAAGAGAAGATAGAATGGAATTTCAGTTATGTGTTGATCCAAGCAAAATTTGATACTAAATGATTTCTTGTATTGCAGTTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGAT</genome_strand>
        <mrna_strand>TGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG................................................................................................................................................................................AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA..........................................................................................................GGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAG.........................................................................................................................AAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317327" ref_strand="+" ref_description="SGN-E317327 [cTOA-28-A15]">
      <seq>tgagatccaactgaacacacactatgtcgagaaaactctcttcgcacctccgaaccctacacctacttcgatctactcccaaaaccaattcattcgccgccgccgccgccgccaccacctccgtatcttcttctcaatctccggcagccttccgttcgtcggtcactttcttccctcgccacttcagtaccgtatcagagaatgttgttaagaaagtggaggatgtaatgccgattgcaactggtcatgagcgtgaggagcttgaagctgagctccaaggaagggatattcttgacattaactttcctgaaggtccttttggtacaaaggaagcgcctgctgttgtcaaatcctactatgatagaagagttgtaggatgccctggagatgaaggaggtaagtttccattatttatttgacaagtctccatcatacattaattcctttagtcagttgacttcaatctttagttggtttctagtcatgtcctctttcattttctattctaattcaacagaagatgagcatgatgttgtttggttctggctcgagaagggcaagccacatgaatgcccagtatgctcacagtattttgtggtaagtacaggatatcaattaattcatagttagtcctgtggtttgttattgattaaatctaggtgagtttgtaggctgttgaggaatttgctagacatgaatctgtactccctgctttttctaatctaggttaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55107" stop="61895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55407" g_stop="55604" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55781" g_stop="55860" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="278" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55967" g_stop="56017" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="329" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61189" g_stop="61595" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="736" r_length="407" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E317327" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55407" e_stop="55604"/>
          <exon e_start="55781" e_stop="55860"/>
          <exon e_start="55967" e_stop="56017"/>
          <exon e_start="61189" e_stop="61595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAGGTATCCTTTCGCATTTCTCTCTCTACTCTCAACCCTAATTTAATCAGATCTTACGAGTTTGAATAGAGTGACTTGATTGATTTATTGTACTTGCGTTATTTGATATTTTTTTCTAGTTGGTTCCTTTTTTGTTTATGTGATGAGTATGCATTTTTTGTTGTTGTTGTGTGGAGTAGAGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAAGTGAGTTATCACCATGTTTTACTAATTTAGCGTTGAGATATTACGTGTACTAATTCAAATGTTATTGATAGTGACTGAAAATTACATTTGTTGTGTTTCTCTTTAGGGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAGGTTAGTGTGGAACTGTGGGTTTCCTAGTAACTTTTGGTGCTAATAGGCATTAGTTATTGCCCCTTTTGCTTTAGTCATCATTATTGTTGATCACTAAATTGTTTTGTCTTTTATCCAGATTAGTTATTCTCATCTGATGCATAACGATTACTATATCATGTGATTGGTCATTCTCTTATTGACAGGGATAATGAGTAATGAGCAATCATTGGAAATGTTTGGAAGTAGTTGTTTTTAGGTGTTCTTTTGAGTGTTAGGTTCTTCTGAGAAAATTCAATTGAAGATGAAAGCAAGTCAGATAAAAATGAGCAGTGTAATATATGTTCTCGTAAAGTAACATCTGAGTTGTGAATATATTTTAGTTTGCAATCCGAGTCTGAGGAATATGTTTTGGTTTTAACTATTACTCCAGAATGATTATGGAGTTCTATTAAGCTAAAGGCACGACTTGGATCAATCTAAACCAGGGTTATGTTTTTCTTAAGAGGCTGTTCCATTGTTCCAAATTTTAAAGCTGTAAACAACAAATATTTCATTATCCGAAATAGGACCTGGATCCGCCTTGCTATTTCTCGCTTCTTTACTAGTCATAGTTATGTGCTTACTTCAGGAAAAGGGAGGATTGAGGAGAAGAGAAAGGGGTATGATGGATGGTTGATTTTGAATATTTGTACTTTTGTTCATGTTGGTTGGGGCATGAGTGAAAGAGAAGTAAATGAGCTTGTCTCACTTTCCCAGTCTAATCTAAAGAGATTAAATAGGATTAGCTGGAATTGCAAAGTCCCCTCATTTTTTCAATATTAAATAGGATTAGCTGGAGTTGCAAAGTTCCCTCATTTTCGATTGGACGATTCCTAACCTAACCTCTTCGTGCTCCAAGTCTCCAACATCTTGTGAAAGCATGTTTTGGATACACATTAACCCTGCTGGTTTCCAAAATTAATATACGACAACTTTGCCTGAACTTCAAGCGAGTTGGGTTAGCTGTATGAGTGTTTTATGTTTCTTTCCCTCTGCTTGGTTAAGTTAATTCCATTACTCAAACTTAGAAATAATCAAAATTCAGGGGTTATCTGAACCTAAACATTTCTAAATCTGAAACTTATCTTTGCACTTACAATTGAAAAGGCTCTTAATGTCAAAGATAACGTAAGTGCACTAACACGACAAAGTAATCCTTATTAATCTCATACTTTCACTTTTAGTCCACCCCAAAAGGAATAAAAACTAACTTTTTTCATTTTTACCCTAAATGGATGATTTATAGCTACACAAATATTGAAGATTTATTTTAGACCACATATTTCAAAAATCTTTCCTTTTTTTTTTGATGAAGTAAATGTTTCATTGAAGGCATCAAGAAGATGCAAATTAGTTACATAAGTAGAGTCTTTCCTTTATTTCTTTAACTTCATTTCAAGTCAAACGGTGCCACATAAATTGGAACAGAGAGAGTAGTTGGTATCACATATGCAAATCTTTTGCTTTTGTATGTTCTGCTGATTGTGTTCGGTCATGTGCTATTCTATTTGAGAGACCGCGACCATTTCTAATAACTTCCCCTATGAAATTTTATGCTGCCACTTTTCTCCTTTAATGTATCAAAATCATAGTGTGGCAACTAGAGGTCCGTGCATTTGGAAGATATACCAACCTTTTCTTGCTTTATCCTCTACGTGTGTTAGATATAGTTGCTTTGGAATGTAATCATTTCTAAGCTAATCTTTATCTTAGTGACTATACATCCATTTTAACATCCTCAAGTCTTACTTTGTCTCAGTAGTAGCTTGGTATTGAGTTTTCATTGATAAGATACTTATAATTATAAAAAAAATTCATTGACAATTTTCTTGTGGATATGGTCTGCTCTCTTTTACAACATTTCTGGTTCCATCATCATTTTAATGAACTTGTCTTCATTTTGGTAGGTATCTACCTAGCACATATTACTCTCGTAACACTGTCATATTTAGCAATCCTACTTTAGTTTTATATATAAAGCATTCTCATGGAATATTGAACATATATATCTAGATATGTATTTCGACACCATAATATTGTCTAATCTTACCTCAATTTTTTTTTATTGAGCTAAACTTGCAGTTTTTATTGTATACTAAAGCCCTAAGGGGTAGTTTGGAACGCGATTTAGTTATATGGGGATTGTACTGTGAAGATTATGATGTTCTGATTAAATAATAATGCTTAGTAGTCAATCAAGTGTATTGAGAAGCATGATGTCTTAGTTTCAAATCTCCTCAGAGACAAAATACACTAGGTAATTTCTTCCCATTTGTTCTAGAATTGGTGGATAAAGTTATCTAGCACATACCCTTCTGGATGACCCAGTGGTTCGAGCTTAGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGTGAAAGCAAGTGGTTTGCCTTCTGGGCCGAGCTCGTCGCACCAGGCTTGCCTAGTGCAGGTTATCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCTGTTGTCATCAAAAAAAAGTTATCTAGTAAATGATGTTGTTGGGAGGTGACATGTATCCCACAAAATTAGTCGAGGTGCGTGAAGTTGGCCCGGAGTAATGTTAGTATTGGTACTTATGGAGTTGAGGTTTAGAGGAATATTAGAAACATGTGGCCCAAATTAGAGGCTAATTTGTACATACAGGTGGGAGATGGTAGGTGAGCGAAATTCTGGGGAGTTGCTGGGATAAATAGATACCTTTGATGGACGATCTGTTCATGCTATGCAATAACCTAGAGGCAAAGATCAAGAACTGCTGGATAATACAGGGGCAGAATCTTTCCTTCAGCAGATTCTACTGAACGATTGAGATGTAGAGAGAGCAGCCAAACTGCTAGTAGAAACAGGGAATTCCCCGGCACCAACTGTTCCTGATTCAGCGATGGTTACAGACTTACAGTTTACACAATGAAGATGACACTTTCACTATCAATAGGGCCTATAAAATAGAAAACAATCAAAATAGAAGAAACAACAAAGATTTTGGTTGTGGAGACACTTAGCACCAACCAAGATAAAATGTTTTACATGATTGGTTGCTAGAAGGGACTGCCTGACCCATGAAGTCCTGAAGAAGATAAGAGCCAGCAAAGTTTGTGGAGGAAGGTGTGGAGAAACTTAGCACCAAGCCACCAACCAAGTTAAAATGTTTTACATGGCTGGTTGCTAGAAGAGTCTAGTATCTTGGTGTTCGTTATATGGGAAGATAAAAGAGACCAATAACCACTTATTGTTGCGTTACGGTTTCACAACACATTTAACAGGCTTGGGCCATATTTCTCAACCTCACAAACAAAGTGGACTATGCCTGAACACACACAGACCTGTTGAGTTGCTGGATTAGAAAAGGGGGCAATAAGAGACAGAAGGCACGGTGGAGACTAATCCCACATTGCATATGGTGGACGATATCGAGAGAGGAAAAGTAGAAATTTTGACGATAAATTCAATTCCGTTAATAAGGTTAACTGGAACTGCATTGTTTCTCCCTATTTTTGGTGTAAAGAAATAGGTTGAGAGGAAACAAAACAACTTTTAGAATTCTTAGGATCTCTATTAGTATTACTTTCTCTGTTCCTACTTTTGAAGGTCCTCAGCATTAAGGAAGAATACAACATTACCATTTGCAGGAACAAAGAAAAGAGTGTGTATTAGCAATTAAGAGAGAAAATTTGAAGTATAAAAATGCCCCTAAATTAGGCAAACCCCTACATAACATTATTAATACTCATCACATGAAAGTCTTTACATCACCATTCATTTTATAACAACCCCTTCATTATTTTTCACCAAACAACCATGCATTTTAATTCCCGTGTGACTAGTGTGTGAAGTGAACAACCCCTCACTTTCTTAGCATACTTCTCCAACCTTTGGTTGGCTTTCCGATAATCCATTGTGAATATGATAGGAGCAAATATCTATGAGGTTCTACTTCTGCCTGTTTATTTGAAATGTACTGCGTAAATATGGTTTCCAACATATTATTATTATTTTTATAGTCTTATTAATCTGGTACCAAGCTGGTACAGAAGCAAGTACAAAGCATAACTACATAACTTCCACCAATCACACTAGAACTAGATACTGCCCCCCGAATAAGTACAGCCAAACCAAGTAACGATCCATCCTATTTTAAGTACTGCTAGAACACCATAAGATATATTGTTGATGCATTTCGTTAATGCTGATAAATTGGAAATTCTAAGTTAGCGTTTTCTTCTACTTTAGCCCATTCTACGGAGCACAGTCAGTCGCTTAATGGTCTGCCTGTTTCTTGTTTGATTATCACTGAACTAATGGTGGTCTTATCATATGTAATGGAGGCCATTTCTTTTTCAAGTAGTGATGTAGTTCAGGTCATGCCTTGTCTTTTGCATATGCTCTTGGAGATGTAGTTAAACAGAGGTCTTCTCAGCTTCCATAATTAGCTTGTACATTTTGATAATATATGATTGCTTTAGTAAACTTTCATTAGTGCAATTGATTAGTAGTATTGACTGTCTTATTTTATCTTGTAATCCTTCACCAACACGGAAACAACCTCCTCTATTCACCCCACCCTCCCTAGACCCTGCTTGTGGGATTAATGAATCCTTTACCAGTGAAAACTAAGTTACAGGGGTGTGTGGTGAATATTGACAAAATTTGCAAAGCAAATATTTCTTGTGTTTTAACTACTTTCAGTGGTTGACATCACTACTATTGCAACTTATAGGTCTCAAGTTTCCATTATTTTTCCATGTGAAAATAATCTTCTGTTGAATCTTTTTTACTTTTTGATCAATGGGGCATGCAAATTTTATTATTGTTTTTCTGCTAACGCTGATGGCTTCTTAATTAAAACGTTGCTAATTTCAATTCTTCAAATAAGTATAATTTGTGTGGCTGATAAGTGATTAAAGATTATATGTCAGCACTAACCACATGGTAATTGATGTTATGTGGAGATCACTTATGTTTGTTTTCAGTTATGTTTCAAGTTTGATGCATATGGAAATATGGATATGATCAACACTTTGAATGTTACCTTGTCAAAAATAAATAAATGATCAAATTTTGTGTGTTTTATATTGTAGGAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAGGTAAGTTTCCATTATTTATTTGACAAGTCTCCATCATACATTAATTCCTTTAGTCAGTTGACTTCAATCTTTAGTTGGTTTCTAGTCATGTCCTCTTTCATTTTCTATTCTAATTCAACAGAAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTGGTAAGTACAGGATATCAATTAATTCATAGTTAGTCCTGTGGTTTGTTATTGATTAAATCTAGGTGAGTTTGTAGGCTGTTGAGGAATTTGCTAGACATGAATCTGTACTCCCTGCTTTTCTAAATCTAGGTTAATTTTG</genome_strand>
        <mrna_strand>TGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG................................................................................................................................................................................AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA..........................................................................................................GGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAGGTAAGTTTCCATTATTTATTTGACAAGTCTCCATCATACATTAATTCCTTTAGTCAGTTGACTTCAATCTTTAGTTGGTTTCTAGTCATGTCCTCTTTCATTTTCTATTCTAATTCAACAGAAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTGGTAAGTACAGGATATCAATTAATTCATAGTTAGTCCTGTGGTTTGTTATTGATTAAATCTAGGTGAGTTTGTAGGCTGTTGAGGAATTTGCTAGACATGAATCTGTACTCCCTGCTTTTTCTAATCTAGGTTAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735276" ref_strand="+" ref_description="SGN-E735276 [LB14DF04]">
      <seq>agaaaactctcttcgcacctccgaaccctacacctacttcgatctactcccaaaaccaattcattcgccgccgccgccaccaccaccacctccgtatcttcttctcaatctccggcagccttccgttcgtcggtcactttcttccctcgccacttcagtaccgtatcagagaatgttgttaagaaagtggaggatgtaatgccgattgcaactggtcatgagcgtgaggagcttgaagctgagctccaaggaagggatattcttgacattaactttcctgaaggtccttttggtacaaaggaagcgcctgctgttgtcaaatcctactatgatagaagaattgtaggatgccctggagatgaaggagaagatgagcatgatgttgtttggttctggcttgagaagggcaagccacatgaatgcccagtatgctcacagtattttgtgttggaagtggttggacctggaggacctcctgatggacatggcagtgatgatgagggtcatcattgatagtccgtcttgcaattttttgtcggaataaatttggttgagacaatgagagattactcgttttataaactgatgattcaaagctgtgttctttctttgcctttactggattattgttcttatgcttgctgtggtagcactgaagttgaatatttttgcttatatattttatacaattgacatgtatgtcgtggtctacttgaaatatagacccagtttcttccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55136" stop="86406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55436" g_stop="55604" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55781" g_stop="55860" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="249" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55967" g_stop="56017" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="300" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61189" g_stop="61255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="367" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61256" i_stop="61376" i_length="121">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61377" g_stop="61456" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="447" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61457" i_stop="63298" i_length="1842">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63299" g_stop="63484" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="632" r_length="185" r_score="0.898"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63485" i_stop="63567" i_length="83">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.942" a_score="0.46"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63568" g_stop="63689" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="754" r_length="122" r_score="0.458"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E735276" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55436" e_stop="55604"/>
          <exon e_start="55781" e_stop="55860"/>
          <exon e_start="55967" e_stop="56017"/>
          <exon e_start="61189" e_stop="61255"/>
          <exon e_start="61377" e_stop="61456"/>
          <exon e_start="63299" e_stop="63484"/>
          <exon e_start="63568" e_stop="63689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAGGTATCCTTTCGCATTTCTCTCTCTACTCTCAACCCTAATTTAATCAGATCTTACGAGTTTGAATAGAGTGACTTGATTGATTTATTGTACTTGCGTTATTTGATATTTTTTTCTAGTTGGTTCCTTTTTTGTTTATGTGATGAGTATGCATTTTTTGTTGTTGTTGTGTGGAGTAGAGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAAGTGAGTTATCACCATGTTTTACTAATTTAGCGTTGAGATATTACGTGTACTAATTCAAATGTTATTGATAGTGACTGAAAATTACATTTGTTGTGTTTCTCTTTAGGGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAGGTTAGTGTGGAACTGTGGGTTTCCTAGTAACTTTTGGTGCTAATAGGCATTAGTTATTGCCCCTTTTGCTTTAGTCATCATTATTGTTGATCACTAAATTGTTTTGTCTTTTATCCAGATTAGTTATTCTCATCTGATGCATAACGATTACTATATCATGTGATTGGTCATTCTCTTATTGACAGGGATAATGAGTAATGAGCAATCATTGGAAATGTTTGGAAGTAGTTGTTTTTAGGTGTTCTTTTGAGTGTTAGGTTCTTCTGAGAAAATTCAATTGAAGATGAAAGCAAGTCAGATAAAAATGAGCAGTGTAATATATGTTCTCGTAAAGTAACATCTGAGTTGTGAATATATTTTAGTTTGCAATCCGAGTCTGAGGAATATGTTTTGGTTTTAACTATTACTCCAGAATGATTATGGAGTTCTATTAAGCTAAAGGCACGACTTGGATCAATCTAAACCAGGGTTATGTTTTTCTTAAGAGGCTGTTCCATTGTTCCAAATTTTAAAGCTGTAAACAACAAATATTTCATTATCCGAAATAGGACCTGGATCCGCCTTGCTATTTCTCGCTTCTTTACTAGTCATAGTTATGTGCTTACTTCAGGAAAAGGGAGGATTGAGGAGAAGAGAAAGGGGTATGATGGATGGTTGATTTTGAATATTTGTACTTTTGTTCATGTTGGTTGGGGCATGAGTGAAAGAGAAGTAAATGAGCTTGTCTCACTTTCCCAGTCTAATCTAAAGAGATTAAATAGGATTAGCTGGAATTGCAAAGTCCCCTCATTTTTTCAATATTAAATAGGATTAGCTGGAGTTGCAAAGTTCCCTCATTTTCGATTGGACGATTCCTAACCTAACCTCTTCGTGCTCCAAGTCTCCAACATCTTGTGAAAGCATGTTTTGGATACACATTAACCCTGCTGGTTTCCAAAATTAATATACGACAACTTTGCCTGAACTTCAAGCGAGTTGGGTTAGCTGTATGAGTGTTTTATGTTTCTTTCCCTCTGCTTGGTTAAGTTAATTCCATTACTCAAACTTAGAAATAATCAAAATTCAGGGGTTATCTGAACCTAAACATTTCTAAATCTGAAACTTATCTTTGCACTTACAATTGAAAAGGCTCTTAATGTCAAAGATAACGTAAGTGCACTAACACGACAAAGTAATCCTTATTAATCTCATACTTTCACTTTTAGTCCACCCCAAAAGGAATAAAAACTAACTTTTTTCATTTTTACCCTAAATGGATGATTTATAGCTACACAAATATTGAAGATTTATTTTAGACCACATATTTCAAAAATCTTTCCTTTTTTTTTTGATGAAGTAAATGTTTCATTGAAGGCATCAAGAAGATGCAAATTAGTTACATAAGTAGAGTCTTTCCTTTATTTCTTTAACTTCATTTCAAGTCAAACGGTGCCACATAAATTGGAACAGAGAGAGTAGTTGGTATCACATATGCAAATCTTTTGCTTTTGTATGTTCTGCTGATTGTGTTCGGTCATGTGCTATTCTATTTGAGAGACCGCGACCATTTCTAATAACTTCCCCTATGAAATTTTATGCTGCCACTTTTCTCCTTTAATGTATCAAAATCATAGTGTGGCAACTAGAGGTCCGTGCATTTGGAAGATATACCAACCTTTTCTTGCTTTATCCTCTACGTGTGTTAGATATAGTTGCTTTGGAATGTAATCATTTCTAAGCTAATCTTTATCTTAGTGACTATACATCCATTTTAACATCCTCAAGTCTTACTTTGTCTCAGTAGTAGCTTGGTATTGAGTTTTCATTGATAAGATACTTATAATTATAAAAAAAATTCATTGACAATTTTCTTGTGGATATGGTCTGCTCTCTTTTACAACATTTCTGGTTCCATCATCATTTTAATGAACTTGTCTTCATTTTGGTAGGTATCTACCTAGCACATATTACTCTCGTAACACTGTCATATTTAGCAATCCTACTTTAGTTTTATATATAAAGCATTCTCATGGAATATTGAACATATATATCTAGATATGTATTTCGACACCATAATATTGTCTAATCTTACCTCAATTTTTTTTTATTGAGCTAAACTTGCAGTTTTTATTGTATACTAAAGCCCTAAGGGGTAGTTTGGAACGCGATTTAGTTATATGGGGATTGTACTGTGAAGATTATGATGTTCTGATTAAATAATAATGCTTAGTAGTCAATCAAGTGTATTGAGAAGCATGATGTCTTAGTTTCAAATCTCCTCAGAGACAAAATACACTAGGTAATTTCTTCCCATTTGTTCTAGAATTGGTGGATAAAGTTATCTAGCACATACCCTTCTGGATGACCCAGTGGTTCGAGCTTAGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGTGAAAGCAAGTGGTTTGCCTTCTGGGCCGAGCTCGTCGCACCAGGCTTGCCTAGTGCAGGTTATCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCTGTTGTCATCAAAAAAAAGTTATCTAGTAAATGATGTTGTTGGGAGGTGACATGTATCCCACAAAATTAGTCGAGGTGCGTGAAGTTGGCCCGGAGTAATGTTAGTATTGGTACTTATGGAGTTGAGGTTTAGAGGAATATTAGAAACATGTGGCCCAAATTAGAGGCTAATTTGTACATACAGGTGGGAGATGGTAGGTGAGCGAAATTCTGGGGAGTTGCTGGGATAAATAGATACCTTTGATGGACGATCTGTTCATGCTATGCAATAACCTAGAGGCAAAGATCAAGAACTGCTGGATAATACAGGGGCAGAATCTTTCCTTCAGCAGATTCTACTGAACGATTGAGATGTAGAGAGAGCAGCCAAACTGCTAGTAGAAACAGGGAATTCCCCGGCACCAACTGTTCCTGATTCAGCGATGGTTACAGACTTACAGTTTACACAATGAAGATGACACTTTCACTATCAATAGGGCCTATAAAATAGAAAACAATCAAAATAGAAGAAACAACAAAGATTTTGGTTGTGGAGACACTTAGCACCAACCAAGATAAAATGTTTTACATGATTGGTTGCTAGAAGGGACTGCCTGACCCATGAAGTCCTGAAGAAGATAAGAGCCAGCAAAGTTTGTGGAGGAAGGTGTGGAGAAACTTAGCACCAAGCCACCAACCAAGTTAAAATGTTTTACATGGCTGGTTGCTAGAAGAGTCTAGTATCTTGGTGTTCGTTATATGGGAAGATAAAAGAGACCAATAACCACTTATTGTTGCGTTACGGTTTCACAACACATTTAACAGGCTTGGGCCATATTTCTCAACCTCACAAACAAAGTGGACTATGCCTGAACACACACAGACCTGTTGAGTTGCTGGATTAGAAAAGGGGGCAATAAGAGACAGAAGGCACGGTGGAGACTAATCCCACATTGCATATGGTGGACGATATCGAGAGAGGAAAAGTAGAAATTTTGACGATAAATTCAATTCCGTTAATAAGGTTAACTGGAACTGCATTGTTTCTCCCTATTTTTGGTGTAAAGAAATAGGTTGAGAGGAAACAAAACAACTTTTAGAATTCTTAGGATCTCTATTAGTATTACTTTCTCTGTTCCTACTTTTGAAGGTCCTCAGCATTAAGGAAGAATACAACATTACCATTTGCAGGAACAAAGAAAAGAGTGTGTATTAGCAATTAAGAGAGAAAATTTGAAGTATAAAAATGCCCCTAAATTAGGCAAACCCCTACATAACATTATTAATACTCATCACATGAAAGTCTTTACATCACCATTCATTTTATAACAACCCCTTCATTATTTTTCACCAAACAACCATGCATTTTAATTCCCGTGTGACTAGTGTGTGAAGTGAACAACCCCTCACTTTCTTAGCATACTTCTCCAACCTTTGGTTGGCTTTCCGATAATCCATTGTGAATATGATAGGAGCAAATATCTATGAGGTTCTACTTCTGCCTGTTTATTTGAAATGTACTGCGTAAATATGGTTTCCAACATATTATTATTATTTTTATAGTCTTATTAATCTGGTACCAAGCTGGTACAGAAGCAAGTACAAAGCATAACTACATAACTTCCACCAATCACACTAGAACTAGATACTGCCCCCCGAATAAGTACAGCCAAACCAAGTAACGATCCATCCTATTTTAAGTACTGCTAGAACACCATAAGATATATTGTTGATGCATTTCGTTAATGCTGATAAATTGGAAATTCTAAGTTAGCGTTTTCTTCTACTTTAGCCCATTCTACGGAGCACAGTCAGTCGCTTAATGGTCTGCCTGTTTCTTGTTTGATTATCACTGAACTAATGGTGGTCTTATCATATGTAATGGAGGCCATTTCTTTTTCAAGTAGTGATGTAGTTCAGGTCATGCCTTGTCTTTTGCATATGCTCTTGGAGATGTAGTTAAACAGAGGTCTTCTCAGCTTCCATAATTAGCTTGTACATTTTGATAATATATGATTGCTTTAGTAAACTTTCATTAGTGCAATTGATTAGTAGTATTGACTGTCTTATTTTATCTTGTAATCCTTCACCAACACGGAAACAACCTCCTCTATTCACCCCACCCTCCCTAGACCCTGCTTGTGGGATTAATGAATCCTTTACCAGTGAAAACTAAGTTACAGGGGTGTGTGGTGAATATTGACAAAATTTGCAAAGCAAATATTTCTTGTGTTTTAACTACTTTCAGTGGTTGACATCACTACTATTGCAACTTATAGGTCTCAAGTTTCCATTATTTTTCCATGTGAAAATAATCTTCTGTTGAATCTTTTTTACTTTTTGATCAATGGGGCATGCAAATTTTATTATTGTTTTTCTGCTAACGCTGATGGCTTCTTAATTAAAACGTTGCTAATTTCAATTCTTCAAATAAGTATAATTTGTGTGGCTGATAAGTGATTAAAGATTATATGTCAGCACTAACCACATGGTAATTGATGTTATGTGGAGATCACTTATGTTTGTTTTCAGTTATGTTTCAAGTTTGATGCATATGGAAATATGGATATGATCAACACTTTGAATGTTACCTTGTCAAAAATAAATAAATGATCAAATTTTGTGTGTTTTATATTGTAGGAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAGGTAAGTTTCCATTATTTATTTGACAAGTCTCCATCATACATTAATTCCTTTAGTCAGTTGACTTCAATCTTTAGTTGGTTTCTAGTCATGTCCTCTTTCATTTTCTATTCTAATTCAACAGAAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTGGTAAGTACAGGATATCAATTAATTCATAGTTAGTCCTGTGGTTTGTTATTGATTAAATCTAGGTGAGTTTGTAGGCTGTTGAGGAATTTGCTAGACATGAATCTGTACTCCCTGCTTTTCTAAATCTAGGTTAATTTTGAGGATGTTAGGGAGTTTTGTAGGTATGAATTTGTTGTTGCTGTTGTATATGTCAAAAAAGGCGCATCAACATCTATTAATAAACATTTCTTCAGTTAATAACGAGAATATTTTTTCTTGGGTTGGCTTTTGCTTAGCTGCAAATTACTAATTGTAGTTCTCAATTGTCCAAATGTGGTACTTGCTTAATTCTGATAGAATGCACATATGTGGCAAATGCACACAAGAGGTTCAGTTGTGTTGACAAAATGATGAAAGATGGGGAGCTGGTAGATGATGAGAAAATTATTAATGAACACACTCAAGACTTCTATTAAAGTATTTAGGGAGAATGAAGAAAGGAGATTAAACTGGAAGGATGAAGAACTGAAAAGGCTTCCTGATGAAGACAGAGAGTGGCTGCAAAGATCTTTTACTATGGAAGAACTGGAAGTTGTTATCAGATCTTTTAGAGGAGATAAGGCTCCATGTCCCGATGGGTGTATCTACACTTCTTCCTAAGATGCTGGAGCACAAAAAAAGATGATGTTTAAAGGACTGGAAATTTTCTATCAAAAGGATTATTTTGTTAAAAGTTTAAATGCTACTTTTATTGCTTTGATACCTAAAAGGAAGGGGCGGTTGAGGTGAAAGATTTCAGGCCTATCAACTTCCTTGGCCTGGGAGTGTATAAAATTATTGCTAAACTATTGGCTGAAAGGCTCAAACTGGTAATTGATAAGTTAGTGTCAGGACATCAGGATGCATTTATTAAAGTGAGGCAAATAGTTGATGCAACTTTGGTCGCCAATTTAAGCATTGAGAAACTAATGAAATAAAGAAGAGAGGAGCTGCTTGCAAGCTTGATCTTGAAAAGGCTTACGACCATTTTAACTGGTCATATTTATTAAATATTCGGAAACAAATAGGCGATAAATGGATTGAATGGATTTGTTACTGCAAATCTAGTGTAAAATTCTATATATTGATAAACGGGAGTCCACATGGTTTTTTAACTCTCAAAGAGGCTTGAGGCAAGGGGATCCACTTTCCTCCTATCTGTTTACTCTGGTGATTGAAGCTTTTAGTATGGTGGAGAAGCAAGCTGAAAAGTTGGGCTGGATATAAGACATGAGCTTTCAAAGAAATTGTGTTGATAGGGTTACCTTATCGCACATTCTATATGCTGATAGATGATACTCTTCTTTATCTTAGAGAGATTCTGGAAATTTTGAGGCAGTTATGGTTGAAAGTTAATCTGGCAAAGCGCAGTATTTTCAGCATTAATGCAGATGACCTCTGCCCTTCCATCCCTTGGATAGATTGAGAGGGGCTTTTGTTTTTTCATGTTGTCAAGGAACTAGCGGATATCCTGGGATGTAAGGCGGAAACGTTCCTCACTGTTTCTTTGGGGCTTCCCTGGGGGCGAAAAGGCAATGATCAAAGTATCTGGAATAAGGTGGATACCCTGATTTGGCTGGGCTAGTAACACACACACAAAAAAAAAAAAATCAGTTAAGAATTGTTATAGCTTATAGTATGTTACTGCAGTCAGTACTCAGGTCAGAATTGTGCTGCTTTTTGTTTCTTCTCCTGTATCATCTTGGTACCAATTAATAAAATCTCTACCTAATCAAAAAGAAGAAGAAAGAGAAGATAGAATGGAATTTCAGTTATGTGTTGATCCAAGCAAAATTTGATACTAAATGATTTCTTGTATTGCAGTTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATAGTCCGTCTTGCAATTTTTTGTCGGAATAATTTTGGTGAAAAAAATAGAAAATTCCTCCTTTTATAAACTGAGAATTCCAAAGCTTGGTTCTTTCTTTGCCTTTACCGGATAATTGTTTCTTTTTCTTTTGCTGGGGAAAACCCCGGAAAAAGAAAAAAATTTTTTTCTTTAAAAATTTTTTTTAAAAAAAAAAAAAAACAGAGAAGATGGGTGGGGGGGGCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCACCACCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG................................................................................................................................................................................AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA..........................................................................................................GGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAATTGTAGGATGCCCTGGAGATGAAGGAG.........................................................................................................................AAGATGAGCATGATGTTGTTTGGTTCTGGCTTGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATAGTCCGTCTTGCAATTTTTTGTCGGAATAAATTTGGTTGAGACAATGAGAGATTACTCGTTTTATAAACTGATGATT-CAAAGCTGTGTTCTTTCTTTGCCTTTACTGGATTATTGTTC...................................................................................TTATGCTTGCTGTGGTAGCACTGAAGTTGAATATTTTTGCTTATATATTTTATACAATTGACATGTATGTCGTGGTCTACTTGAAATATAGACCCAGTTTCTTCCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301036" ref_strand="+" ref_description="SGN-E301036 [cLEW-22-E14]">
      <seq>acctccgaaccctacacctacttcgatctactcccaaaaccaattcattcgccgccgccgccgccgccaccacctccgtatcttcttctcaatctccggcagccttccgttcgtcggtcactttcttccctcgccacttcagtaccgtatcagagaatgttgttaagaaagtggaggatgtaatgccgattgcaactggtcatgagcgtgaggagcttgaagctgagctccaaggaagggatattcttgacattaactttcctgaaggtccttttggtacaaaggaagcgcctgctgttgtcaaatcctactatgataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55152" stop="61524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55452" g_stop="55604" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55781" g_stop="55860" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="233" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55967" g_stop="56017" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="284" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61189" g_stop="61224" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="320" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E301036" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55452" e_stop="55604"/>
          <exon e_start="55781" e_stop="55860"/>
          <exon e_start="55967" e_stop="56017"/>
          <exon e_start="61189" e_stop="61224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAGGTATCCTTTCGCATTTCTCTCTCTACTCTCAACCCTAATTTAATCAGATCTTACGAGTTTGAATAGAGTGACTTGATTGATTTATTGTACTTGCGTTATTTGATATTTTTTTCTAGTTGGTTCCTTTTTTGTTTATGTGATGAGTATGCATTTTTTGTTGTTGTTGTGTGGAGTAGAGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAAGTGAGTTATCACCATGTTTTACTAATTTAGCGTTGAGATATTACGTGTACTAATTCAAATGTTATTGATAGTGACTGAAAATTACATTTGTTGTGTTTCTCTTTAGGGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAGGTTAGTGTGGAACTGTGGGTTTCCTAGTAACTTTTGGTGCTAATAGGCATTAGTTATTGCCCCTTTTGCTTTAGTCATCATTATTGTTGATCACTAAATTGTTTTGTCTTTTATCCAGATTAGTTATTCTCATCTGATGCATAACGATTACTATATCATGTGATTGGTCATTCTCTTATTGACAGGGATAATGAGTAATGAGCAATCATTGGAAATGTTTGGAAGTAGTTGTTTTTAGGTGTTCTTTTGAGTGTTAGGTTCTTCTGAGAAAATTCAATTGAAGATGAAAGCAAGTCAGATAAAAATGAGCAGTGTAATATATGTTCTCGTAAAGTAACATCTGAGTTGTGAATATATTTTAGTTTGCAATCCGAGTCTGAGGAATATGTTTTGGTTTTAACTATTACTCCAGAATGATTATGGAGTTCTATTAAGCTAAAGGCACGACTTGGATCAATCTAAACCAGGGTTATGTTTTTCTTAAGAGGCTGTTCCATTGTTCCAAATTTTAAAGCTGTAAACAACAAATATTTCATTATCCGAAATAGGACCTGGATCCGCCTTGCTATTTCTCGCTTCTTTACTAGTCATAGTTATGTGCTTACTTCAGGAAAAGGGAGGATTGAGGAGAAGAGAAAGGGGTATGATGGATGGTTGATTTTGAATATTTGTACTTTTGTTCATGTTGGTTGGGGCATGAGTGAAAGAGAAGTAAATGAGCTTGTCTCACTTTCCCAGTCTAATCTAAAGAGATTAAATAGGATTAGCTGGAATTGCAAAGTCCCCTCATTTTTTCAATATTAAATAGGATTAGCTGGAGTTGCAAAGTTCCCTCATTTTCGATTGGACGATTCCTAACCTAACCTCTTCGTGCTCCAAGTCTCCAACATCTTGTGAAAGCATGTTTTGGATACACATTAACCCTGCTGGTTTCCAAAATTAATATACGACAACTTTGCCTGAACTTCAAGCGAGTTGGGTTAGCTGTATGAGTGTTTTATGTTTCTTTCCCTCTGCTTGGTTAAGTTAATTCCATTACTCAAACTTAGAAATAATCAAAATTCAGGGGTTATCTGAACCTAAACATTTCTAAATCTGAAACTTATCTTTGCACTTACAATTGAAAAGGCTCTTAATGTCAAAGATAACGTAAGTGCACTAACACGACAAAGTAATCCTTATTAATCTCATACTTTCACTTTTAGTCCACCCCAAAAGGAATAAAAACTAACTTTTTTCATTTTTACCCTAAATGGATGATTTATAGCTACACAAATATTGAAGATTTATTTTAGACCACATATTTCAAAAATCTTTCCTTTTTTTTTTGATGAAGTAAATGTTTCATTGAAGGCATCAAGAAGATGCAAATTAGTTACATAAGTAGAGTCTTTCCTTTATTTCTTTAACTTCATTTCAAGTCAAACGGTGCCACATAAATTGGAACAGAGAGAGTAGTTGGTATCACATATGCAAATCTTTTGCTTTTGTATGTTCTGCTGATTGTGTTCGGTCATGTGCTATTCTATTTGAGAGACCGCGACCATTTCTAATAACTTCCCCTATGAAATTTTATGCTGCCACTTTTCTCCTTTAATGTATCAAAATCATAGTGTGGCAACTAGAGGTCCGTGCATTTGGAAGATATACCAACCTTTTCTTGCTTTATCCTCTACGTGTGTTAGATATAGTTGCTTTGGAATGTAATCATTTCTAAGCTAATCTTTATCTTAGTGACTATACATCCATTTTAACATCCTCAAGTCTTACTTTGTCTCAGTAGTAGCTTGGTATTGAGTTTTCATTGATAAGATACTTATAATTATAAAAAAAATTCATTGACAATTTTCTTGTGGATATGGTCTGCTCTCTTTTACAACATTTCTGGTTCCATCATCATTTTAATGAACTTGTCTTCATTTTGGTAGGTATCTACCTAGCACATATTACTCTCGTAACACTGTCATATTTAGCAATCCTACTTTAGTTTTATATATAAAGCATTCTCATGGAATATTGAACATATATATCTAGATATGTATTTCGACACCATAATATTGTCTAATCTTACCTCAATTTTTTTTTATTGAGCTAAACTTGCAGTTTTTATTGTATACTAAAGCCCTAAGGGGTAGTTTGGAACGCGATTTAGTTATATGGGGATTGTACTGTGAAGATTATGATGTTCTGATTAAATAATAATGCTTAGTAGTCAATCAAGTGTATTGAGAAGCATGATGTCTTAGTTTCAAATCTCCTCAGAGACAAAATACACTAGGTAATTTCTTCCCATTTGTTCTAGAATTGGTGGATAAAGTTATCTAGCACATACCCTTCTGGATGACCCAGTGGTTCGAGCTTAGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGTGAAAGCAAGTGGTTTGCCTTCTGGGCCGAGCTCGTCGCACCAGGCTTGCCTAGTGCAGGTTATCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCTGTTGTCATCAAAAAAAAGTTATCTAGTAAATGATGTTGTTGGGAGGTGACATGTATCCCACAAAATTAGTCGAGGTGCGTGAAGTTGGCCCGGAGTAATGTTAGTATTGGTACTTATGGAGTTGAGGTTTAGAGGAATATTAGAAACATGTGGCCCAAATTAGAGGCTAATTTGTACATACAGGTGGGAGATGGTAGGTGAGCGAAATTCTGGGGAGTTGCTGGGATAAATAGATACCTTTGATGGACGATCTGTTCATGCTATGCAATAACCTAGAGGCAAAGATCAAGAACTGCTGGATAATACAGGGGCAGAATCTTTCCTTCAGCAGATTCTACTGAACGATTGAGATGTAGAGAGAGCAGCCAAACTGCTAGTAGAAACAGGGAATTCCCCGGCACCAACTGTTCCTGATTCAGCGATGGTTACAGACTTACAGTTTACACAATGAAGATGACACTTTCACTATCAATAGGGCCTATAAAATAGAAAACAATCAAAATAGAAGAAACAACAAAGATTTTGGTTGTGGAGACACTTAGCACCAACCAAGATAAAATGTTTTACATGATTGGTTGCTAGAAGGGACTGCCTGACCCATGAAGTCCTGAAGAAGATAAGAGCCAGCAAAGTTTGTGGAGGAAGGTGTGGAGAAACTTAGCACCAAGCCACCAACCAAGTTAAAATGTTTTACATGGCTGGTTGCTAGAAGAGTCTAGTATCTTGGTGTTCGTTATATGGGAAGATAAAAGAGACCAATAACCACTTATTGTTGCGTTACGGTTTCACAACACATTTAACAGGCTTGGGCCATATTTCTCAACCTCACAAACAAAGTGGACTATGCCTGAACACACACAGACCTGTTGAGTTGCTGGATTAGAAAAGGGGGCAATAAGAGACAGAAGGCACGGTGGAGACTAATCCCACATTGCATATGGTGGACGATATCGAGAGAGGAAAAGTAGAAATTTTGACGATAAATTCAATTCCGTTAATAAGGTTAACTGGAACTGCATTGTTTCTCCCTATTTTTGGTGTAAAGAAATAGGTTGAGAGGAAACAAAACAACTTTTAGAATTCTTAGGATCTCTATTAGTATTACTTTCTCTGTTCCTACTTTTGAAGGTCCTCAGCATTAAGGAAGAATACAACATTACCATTTGCAGGAACAAAGAAAAGAGTGTGTATTAGCAATTAAGAGAGAAAATTTGAAGTATAAAAATGCCCCTAAATTAGGCAAACCCCTACATAACATTATTAATACTCATCACATGAAAGTCTTTACATCACCATTCATTTTATAACAACCCCTTCATTATTTTTCACCAAACAACCATGCATTTTAATTCCCGTGTGACTAGTGTGTGAAGTGAACAACCCCTCACTTTCTTAGCATACTTCTCCAACCTTTGGTTGGCTTTCCGATAATCCATTGTGAATATGATAGGAGCAAATATCTATGAGGTTCTACTTCTGCCTGTTTATTTGAAATGTACTGCGTAAATATGGTTTCCAACATATTATTATTATTTTTATAGTCTTATTAATCTGGTACCAAGCTGGTACAGAAGCAAGTACAAAGCATAACTACATAACTTCCACCAATCACACTAGAACTAGATACTGCCCCCCGAATAAGTACAGCCAAACCAAGTAACGATCCATCCTATTTTAAGTACTGCTAGAACACCATAAGATATATTGTTGATGCATTTCGTTAATGCTGATAAATTGGAAATTCTAAGTTAGCGTTTTCTTCTACTTTAGCCCATTCTACGGAGCACAGTCAGTCGCTTAATGGTCTGCCTGTTTCTTGTTTGATTATCACTGAACTAATGGTGGTCTTATCATATGTAATGGAGGCCATTTCTTTTTCAAGTAGTGATGTAGTTCAGGTCATGCCTTGTCTTTTGCATATGCTCTTGGAGATGTAGTTAAACAGAGGTCTTCTCAGCTTCCATAATTAGCTTGTACATTTTGATAATATATGATTGCTTTAGTAAACTTTCATTAGTGCAATTGATTAGTAGTATTGACTGTCTTATTTTATCTTGTAATCCTTCACCAACACGGAAACAACCTCCTCTATTCACCCCACCCTCCCTAGACCCTGCTTGTGGGATTAATGAATCCTTTACCAGTGAAAACTAAGTTACAGGGGTGTGTGGTGAATATTGACAAAATTTGCAAAGCAAATATTTCTTGTGTTTTAACTACTTTCAGTGGTTGACATCACTACTATTGCAACTTATAGGTCTCAAGTTTCCATTATTTTTCCATGTGAAAATAATCTTCTGTTGAATCTTTTTTACTTTTTGATCAATGGGGCATGCAAATTTTATTATTGTTTTTCTGCTAACGCTGATGGCTTCTTAATTAAAACGTTGCTAATTTCAATTCTTCAAATAAGTATAATTTGTGTGGCTGATAAGTGATTAAAGATTATATGTCAGCACTAACCACATGGTAATTGATGTTATGTGGAGATCACTTATGTTTGTTTTCAGTTATGTTTCAAGTTTGATGCATATGGAAATATGGATATGATCAACACTTTGAATGTTACCTTGTCAAAAATAAATAAATGATCAAATTTTGTGTGTTTTATATTGTAGGAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGA</genome_strand>
        <mrna_strand>ACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG................................................................................................................................................................................AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA..........................................................................................................GGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276240" ref_strand="+" ref_description="SGN-E276240 [cLEN-21-P8]">
      <seq>cctacttcgatctactcccaaaaccaattcattcgccgccgccgccgccgccaccacctccgtatcttcttctcaatctccggcagccttccgttcgtcggtcactttcttccctcgccacttcagtaccgtatcagagaatgttgttaagaaagtggaggatgtaatgccgattgcaactggtcatgagcgtgaggagcttgaagctgagctccaaggaagggatattcttgacattaactttcctgaaggtccttttggtacaaaggaagcgcctgctgttgtcaaatcctactatgatagaagagttgtaggatgccctggagatgaaggagaagatgagcatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55168" stop="61691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55468" g_stop="55604" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55781" g_stop="55860" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="217" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55967" g_stop="56017" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="268" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61189" g_stop="61255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="335" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61256" i_stop="61376" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61377" g_stop="61391" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="350" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E276240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55468" e_stop="55604"/>
          <exon e_start="55781" e_stop="55860"/>
          <exon e_start="55967" e_stop="56017"/>
          <exon e_start="61189" e_stop="61255"/>
          <exon e_start="61377" e_stop="61391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAGGTATCCTTTCGCATTTCTCTCTCTACTCTCAACCCTAATTTAATCAGATCTTACGAGTTTGAATAGAGTGACTTGATTGATTTATTGTACTTGCGTTATTTGATATTTTTTTCTAGTTGGTTCCTTTTTTGTTTATGTGATGAGTATGCATTTTTTGTTGTTGTTGTGTGGAGTAGAGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAAGTGAGTTATCACCATGTTTTACTAATTTAGCGTTGAGATATTACGTGTACTAATTCAAATGTTATTGATAGTGACTGAAAATTACATTTGTTGTGTTTCTCTTTAGGGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAGGTTAGTGTGGAACTGTGGGTTTCCTAGTAACTTTTGGTGCTAATAGGCATTAGTTATTGCCCCTTTTGCTTTAGTCATCATTATTGTTGATCACTAAATTGTTTTGTCTTTTATCCAGATTAGTTATTCTCATCTGATGCATAACGATTACTATATCATGTGATTGGTCATTCTCTTATTGACAGGGATAATGAGTAATGAGCAATCATTGGAAATGTTTGGAAGTAGTTGTTTTTAGGTGTTCTTTTGAGTGTTAGGTTCTTCTGAGAAAATTCAATTGAAGATGAAAGCAAGTCAGATAAAAATGAGCAGTGTAATATATGTTCTCGTAAAGTAACATCTGAGTTGTGAATATATTTTAGTTTGCAATCCGAGTCTGAGGAATATGTTTTGGTTTTAACTATTACTCCAGAATGATTATGGAGTTCTATTAAGCTAAAGGCACGACTTGGATCAATCTAAACCAGGGTTATGTTTTTCTTAAGAGGCTGTTCCATTGTTCCAAATTTTAAAGCTGTAAACAACAAATATTTCATTATCCGAAATAGGACCTGGATCCGCCTTGCTATTTCTCGCTTCTTTACTAGTCATAGTTATGTGCTTACTTCAGGAAAAGGGAGGATTGAGGAGAAGAGAAAGGGGTATGATGGATGGTTGATTTTGAATATTTGTACTTTTGTTCATGTTGGTTGGGGCATGAGTGAAAGAGAAGTAAATGAGCTTGTCTCACTTTCCCAGTCTAATCTAAAGAGATTAAATAGGATTAGCTGGAATTGCAAAGTCCCCTCATTTTTTCAATATTAAATAGGATTAGCTGGAGTTGCAAAGTTCCCTCATTTTCGATTGGACGATTCCTAACCTAACCTCTTCGTGCTCCAAGTCTCCAACATCTTGTGAAAGCATGTTTTGGATACACATTAACCCTGCTGGTTTCCAAAATTAATATACGACAACTTTGCCTGAACTTCAAGCGAGTTGGGTTAGCTGTATGAGTGTTTTATGTTTCTTTCCCTCTGCTTGGTTAAGTTAATTCCATTACTCAAACTTAGAAATAATCAAAATTCAGGGGTTATCTGAACCTAAACATTTCTAAATCTGAAACTTATCTTTGCACTTACAATTGAAAAGGCTCTTAATGTCAAAGATAACGTAAGTGCACTAACACGACAAAGTAATCCTTATTAATCTCATACTTTCACTTTTAGTCCACCCCAAAAGGAATAAAAACTAACTTTTTTCATTTTTACCCTAAATGGATGATTTATAGCTACACAAATATTGAAGATTTATTTTAGACCACATATTTCAAAAATCTTTCCTTTTTTTTTTGATGAAGTAAATGTTTCATTGAAGGCATCAAGAAGATGCAAATTAGTTACATAAGTAGAGTCTTTCCTTTATTTCTTTAACTTCATTTCAAGTCAAACGGTGCCACATAAATTGGAACAGAGAGAGTAGTTGGTATCACATATGCAAATCTTTTGCTTTTGTATGTTCTGCTGATTGTGTTCGGTCATGTGCTATTCTATTTGAGAGACCGCGACCATTTCTAATAACTTCCCCTATGAAATTTTATGCTGCCACTTTTCTCCTTTAATGTATCAAAATCATAGTGTGGCAACTAGAGGTCCGTGCATTTGGAAGATATACCAACCTTTTCTTGCTTTATCCTCTACGTGTGTTAGATATAGTTGCTTTGGAATGTAATCATTTCTAAGCTAATCTTTATCTTAGTGACTATACATCCATTTTAACATCCTCAAGTCTTACTTTGTCTCAGTAGTAGCTTGGTATTGAGTTTTCATTGATAAGATACTTATAATTATAAAAAAAATTCATTGACAATTTTCTTGTGGATATGGTCTGCTCTCTTTTACAACATTTCTGGTTCCATCATCATTTTAATGAACTTGTCTTCATTTTGGTAGGTATCTACCTAGCACATATTACTCTCGTAACACTGTCATATTTAGCAATCCTACTTTAGTTTTATATATAAAGCATTCTCATGGAATATTGAACATATATATCTAGATATGTATTTCGACACCATAATATTGTCTAATCTTACCTCAATTTTTTTTTATTGAGCTAAACTTGCAGTTTTTATTGTATACTAAAGCCCTAAGGGGTAGTTTGGAACGCGATTTAGTTATATGGGGATTGTACTGTGAAGATTATGATGTTCTGATTAAATAATAATGCTTAGTAGTCAATCAAGTGTATTGAGAAGCATGATGTCTTAGTTTCAAATCTCCTCAGAGACAAAATACACTAGGTAATTTCTTCCCATTTGTTCTAGAATTGGTGGATAAAGTTATCTAGCACATACCCTTCTGGATGACCCAGTGGTTCGAGCTTAGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGTGAAAGCAAGTGGTTTGCCTTCTGGGCCGAGCTCGTCGCACCAGGCTTGCCTAGTGCAGGTTATCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCTGTTGTCATCAAAAAAAAGTTATCTAGTAAATGATGTTGTTGGGAGGTGACATGTATCCCACAAAATTAGTCGAGGTGCGTGAAGTTGGCCCGGAGTAATGTTAGTATTGGTACTTATGGAGTTGAGGTTTAGAGGAATATTAGAAACATGTGGCCCAAATTAGAGGCTAATTTGTACATACAGGTGGGAGATGGTAGGTGAGCGAAATTCTGGGGAGTTGCTGGGATAAATAGATACCTTTGATGGACGATCTGTTCATGCTATGCAATAACCTAGAGGCAAAGATCAAGAACTGCTGGATAATACAGGGGCAGAATCTTTCCTTCAGCAGATTCTACTGAACGATTGAGATGTAGAGAGAGCAGCCAAACTGCTAGTAGAAACAGGGAATTCCCCGGCACCAACTGTTCCTGATTCAGCGATGGTTACAGACTTACAGTTTACACAATGAAGATGACACTTTCACTATCAATAGGGCCTATAAAATAGAAAACAATCAAAATAGAAGAAACAACAAAGATTTTGGTTGTGGAGACACTTAGCACCAACCAAGATAAAATGTTTTACATGATTGGTTGCTAGAAGGGACTGCCTGACCCATGAAGTCCTGAAGAAGATAAGAGCCAGCAAAGTTTGTGGAGGAAGGTGTGGAGAAACTTAGCACCAAGCCACCAACCAAGTTAAAATGTTTTACATGGCTGGTTGCTAGAAGAGTCTAGTATCTTGGTGTTCGTTATATGGGAAGATAAAAGAGACCAATAACCACTTATTGTTGCGTTACGGTTTCACAACACATTTAACAGGCTTGGGCCATATTTCTCAACCTCACAAACAAAGTGGACTATGCCTGAACACACACAGACCTGTTGAGTTGCTGGATTAGAAAAGGGGGCAATAAGAGACAGAAGGCACGGTGGAGACTAATCCCACATTGCATATGGTGGACGATATCGAGAGAGGAAAAGTAGAAATTTTGACGATAAATTCAATTCCGTTAATAAGGTTAACTGGAACTGCATTGTTTCTCCCTATTTTTGGTGTAAAGAAATAGGTTGAGAGGAAACAAAACAACTTTTAGAATTCTTAGGATCTCTATTAGTATTACTTTCTCTGTTCCTACTTTTGAAGGTCCTCAGCATTAAGGAAGAATACAACATTACCATTTGCAGGAACAAAGAAAAGAGTGTGTATTAGCAATTAAGAGAGAAAATTTGAAGTATAAAAATGCCCCTAAATTAGGCAAACCCCTACATAACATTATTAATACTCATCACATGAAAGTCTTTACATCACCATTCATTTTATAACAACCCCTTCATTATTTTTCACCAAACAACCATGCATTTTAATTCCCGTGTGACTAGTGTGTGAAGTGAACAACCCCTCACTTTCTTAGCATACTTCTCCAACCTTTGGTTGGCTTTCCGATAATCCATTGTGAATATGATAGGAGCAAATATCTATGAGGTTCTACTTCTGCCTGTTTATTTGAAATGTACTGCGTAAATATGGTTTCCAACATATTATTATTATTTTTATAGTCTTATTAATCTGGTACCAAGCTGGTACAGAAGCAAGTACAAAGCATAACTACATAACTTCCACCAATCACACTAGAACTAGATACTGCCCCCCGAATAAGTACAGCCAAACCAAGTAACGATCCATCCTATTTTAAGTACTGCTAGAACACCATAAGATATATTGTTGATGCATTTCGTTAATGCTGATAAATTGGAAATTCTAAGTTAGCGTTTTCTTCTACTTTAGCCCATTCTACGGAGCACAGTCAGTCGCTTAATGGTCTGCCTGTTTCTTGTTTGATTATCACTGAACTAATGGTGGTCTTATCATATGTAATGGAGGCCATTTCTTTTTCAAGTAGTGATGTAGTTCAGGTCATGCCTTGTCTTTTGCATATGCTCTTGGAGATGTAGTTAAACAGAGGTCTTCTCAGCTTCCATAATTAGCTTGTACATTTTGATAATATATGATTGCTTTAGTAAACTTTCATTAGTGCAATTGATTAGTAGTATTGACTGTCTTATTTTATCTTGTAATCCTTCACCAACACGGAAACAACCTCCTCTATTCACCCCACCCTCCCTAGACCCTGCTTGTGGGATTAATGAATCCTTTACCAGTGAAAACTAAGTTACAGGGGTGTGTGGTGAATATTGACAAAATTTGCAAAGCAAATATTTCTTGTGTTTTAACTACTTTCAGTGGTTGACATCACTACTATTGCAACTTATAGGTCTCAAGTTTCCATTATTTTTCCATGTGAAAATAATCTTCTGTTGAATCTTTTTTACTTTTTGATCAATGGGGCATGCAAATTTTATTATTGTTTTTCTGCTAACGCTGATGGCTTCTTAATTAAAACGTTGCTAATTTCAATTCTTCAAATAAGTATAATTTGTGTGGCTGATAAGTGATTAAAGATTATATGTCAGCACTAACCACATGGTAATTGATGTTATGTGGAGATCACTTATGTTTGTTTTCAGTTATGTTTCAAGTTTGATGCATATGGAAATATGGATATGATCAACACTTTGAATGTTACCTTGTCAAAAATAAATAAATGATCAAATTTTGTGTGTTTTATATTGTAGGAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAGGTAAGTTTCCATTATTTATTTGACAAGTCTCCATCATACATTAATTCCTTTAGTCAGTTGACTTCAATCTTTAGTTGGTTTCTAGTCATGTCCTCTTTCATTTTCTATTCTAATTCAACAGAAGATGAGCATGATG</genome_strand>
        <mrna_strand>CCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG................................................................................................................................................................................AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA..........................................................................................................GGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAG.........................................................................................................................AAGATGAGCATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372843" ref_strand="+" ref_description="SGN-E372843 [TUS-32-J14](-)">
      <seq>caatctccggcagccttccgttcgtcggtcactttcttccctcgccacttcagtaccgtatcagagaatgttgttaagaaagtggaggatgtaatgccgattgcaactggtcatgagcgtgaggagcttgaagctgagctccaaggaagggatatttttgacattaactttcctgaaggtccttttggtacaaaggaagcgcctgctgttgtcaaatcctactatgatagaaaagttgtaggatgccctggaaatgaaggaaaaaatgagcatgatgttgtttggttttggctcgagaagggcaagccacatgaatgcccagtatgctcccagtattttgtgttggaagtggttggacctggaggacctcctgatggacatggcagtgatgatgagggtcatcattgatagtccgtcttgcaattttttgtcggaataaatttggttgagacaatgagagattactcgttttataaactgatgattcaaagctgtgttctttttttgcctttactggattattgtttttatgcttgctgtggtagcactgaagttgaatatttttgcttatatattttatacaattgacatgtatgtcgtggtttacttgaaatatagacccagttttttcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55241" stop="86420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55541" g_stop="55604" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55781" g_stop="55860" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="144" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55967" g_stop="56017" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="195" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61189" g_stop="61255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="262" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61256" i_stop="61376" i_length="121">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61377" g_stop="61456" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="342" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61457" i_stop="63298" i_length="1842">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63299" g_stop="63508" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="548" r_length="206" r_score="0.862"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63509" i_stop="63567" i_length="59">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.942" a_score="0.38"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63568" g_stop="63683" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="664" r_length="116" r_score="0.375"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E372843" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55541" e_stop="55604"/>
          <exon e_start="55781" e_stop="55860"/>
          <exon e_start="55967" e_stop="56017"/>
          <exon e_start="61189" e_stop="61255"/>
          <exon e_start="61377" e_stop="61456"/>
          <exon e_start="63299" e_stop="63508"/>
          <exon e_start="63568" e_stop="63683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAGGTATCCTTTCGCATTTCTCTCTCTACTCTCAACCCTAATTTAATCAGATCTTACGAGTTTGAATAGAGTGACTTGATTGATTTATTGTACTTGCGTTATTTGATATTTTTTTCTAGTTGGTTCCTTTTTTGTTTATGTGATGAGTATGCATTTTTTGTTGTTGTTGTGTGGAGTAGAGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAAGTGAGTTATCACCATGTTTTACTAATTTAGCGTTGAGATATTACGTGTACTAATTCAAATGTTATTGATAGTGACTGAAAATTACATTTGTTGTGTTTCTCTTTAGGGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAGGTTAGTGTGGAACTGTGGGTTTCCTAGTAACTTTTGGTGCTAATAGGCATTAGTTATTGCCCCTTTTGCTTTAGTCATCATTATTGTTGATCACTAAATTGTTTTGTCTTTTATCCAGATTAGTTATTCTCATCTGATGCATAACGATTACTATATCATGTGATTGGTCATTCTCTTATTGACAGGGATAATGAGTAATGAGCAATCATTGGAAATGTTTGGAAGTAGTTGTTTTTAGGTGTTCTTTTGAGTGTTAGGTTCTTCTGAGAAAATTCAATTGAAGATGAAAGCAAGTCAGATAAAAATGAGCAGTGTAATATATGTTCTCGTAAAGTAACATCTGAGTTGTGAATATATTTTAGTTTGCAATCCGAGTCTGAGGAATATGTTTTGGTTTTAACTATTACTCCAGAATGATTATGGAGTTCTATTAAGCTAAAGGCACGACTTGGATCAATCTAAACCAGGGTTATGTTTTTCTTAAGAGGCTGTTCCATTGTTCCAAATTTTAAAGCTGTAAACAACAAATATTTCATTATCCGAAATAGGACCTGGATCCGCCTTGCTATTTCTCGCTTCTTTACTAGTCATAGTTATGTGCTTACTTCAGGAAAAGGGAGGATTGAGGAGAAGAGAAAGGGGTATGATGGATGGTTGATTTTGAATATTTGTACTTTTGTTCATGTTGGTTGGGGCATGAGTGAAAGAGAAGTAAATGAGCTTGTCTCACTTTCCCAGTCTAATCTAAAGAGATTAAATAGGATTAGCTGGAATTGCAAAGTCCCCTCATTTTTTCAATATTAAATAGGATTAGCTGGAGTTGCAAAGTTCCCTCATTTTCGATTGGACGATTCCTAACCTAACCTCTTCGTGCTCCAAGTCTCCAACATCTTGTGAAAGCATGTTTTGGATACACATTAACCCTGCTGGTTTCCAAAATTAATATACGACAACTTTGCCTGAACTTCAAGCGAGTTGGGTTAGCTGTATGAGTGTTTTATGTTTCTTTCCCTCTGCTTGGTTAAGTTAATTCCATTACTCAAACTTAGAAATAATCAAAATTCAGGGGTTATCTGAACCTAAACATTTCTAAATCTGAAACTTATCTTTGCACTTACAATTGAAAAGGCTCTTAATGTCAAAGATAACGTAAGTGCACTAACACGACAAAGTAATCCTTATTAATCTCATACTTTCACTTTTAGTCCACCCCAAAAGGAATAAAAACTAACTTTTTTCATTTTTACCCTAAATGGATGATTTATAGCTACACAAATATTGAAGATTTATTTTAGACCACATATTTCAAAAATCTTTCCTTTTTTTTTTGATGAAGTAAATGTTTCATTGAAGGCATCAAGAAGATGCAAATTAGTTACATAAGTAGAGTCTTTCCTTTATTTCTTTAACTTCATTTCAAGTCAAACGGTGCCACATAAATTGGAACAGAGAGAGTAGTTGGTATCACATATGCAAATCTTTTGCTTTTGTATGTTCTGCTGATTGTGTTCGGTCATGTGCTATTCTATTTGAGAGACCGCGACCATTTCTAATAACTTCCCCTATGAAATTTTATGCTGCCACTTTTCTCCTTTAATGTATCAAAATCATAGTGTGGCAACTAGAGGTCCGTGCATTTGGAAGATATACCAACCTTTTCTTGCTTTATCCTCTACGTGTGTTAGATATAGTTGCTTTGGAATGTAATCATTTCTAAGCTAATCTTTATCTTAGTGACTATACATCCATTTTAACATCCTCAAGTCTTACTTTGTCTCAGTAGTAGCTTGGTATTGAGTTTTCATTGATAAGATACTTATAATTATAAAAAAAATTCATTGACAATTTTCTTGTGGATATGGTCTGCTCTCTTTTACAACATTTCTGGTTCCATCATCATTTTAATGAACTTGTCTTCATTTTGGTAGGTATCTACCTAGCACATATTACTCTCGTAACACTGTCATATTTAGCAATCCTACTTTAGTTTTATATATAAAGCATTCTCATGGAATATTGAACATATATATCTAGATATGTATTTCGACACCATAATATTGTCTAATCTTACCTCAATTTTTTTTTATTGAGCTAAACTTGCAGTTTTTATTGTATACTAAAGCCCTAAGGGGTAGTTTGGAACGCGATTTAGTTATATGGGGATTGTACTGTGAAGATTATGATGTTCTGATTAAATAATAATGCTTAGTAGTCAATCAAGTGTATTGAGAAGCATGATGTCTTAGTTTCAAATCTCCTCAGAGACAAAATACACTAGGTAATTTCTTCCCATTTGTTCTAGAATTGGTGGATAAAGTTATCTAGCACATACCCTTCTGGATGACCCAGTGGTTCGAGCTTAGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGTGAAAGCAAGTGGTTTGCCTTCTGGGCCGAGCTCGTCGCACCAGGCTTGCCTAGTGCAGGTTATCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCTGTTGTCATCAAAAAAAAGTTATCTAGTAAATGATGTTGTTGGGAGGTGACATGTATCCCACAAAATTAGTCGAGGTGCGTGAAGTTGGCCCGGAGTAATGTTAGTATTGGTACTTATGGAGTTGAGGTTTAGAGGAATATTAGAAACATGTGGCCCAAATTAGAGGCTAATTTGTACATACAGGTGGGAGATGGTAGGTGAGCGAAATTCTGGGGAGTTGCTGGGATAAATAGATACCTTTGATGGACGATCTGTTCATGCTATGCAATAACCTAGAGGCAAAGATCAAGAACTGCTGGATAATACAGGGGCAGAATCTTTCCTTCAGCAGATTCTACTGAACGATTGAGATGTAGAGAGAGCAGCCAAACTGCTAGTAGAAACAGGGAATTCCCCGGCACCAACTGTTCCTGATTCAGCGATGGTTACAGACTTACAGTTTACACAATGAAGATGACACTTTCACTATCAATAGGGCCTATAAAATAGAAAACAATCAAAATAGAAGAAACAACAAAGATTTTGGTTGTGGAGACACTTAGCACCAACCAAGATAAAATGTTTTACATGATTGGTTGCTAGAAGGGACTGCCTGACCCATGAAGTCCTGAAGAAGATAAGAGCCAGCAAAGTTTGTGGAGGAAGGTGTGGAGAAACTTAGCACCAAGCCACCAACCAAGTTAAAATGTTTTACATGGCTGGTTGCTAGAAGAGTCTAGTATCTTGGTGTTCGTTATATGGGAAGATAAAAGAGACCAATAACCACTTATTGTTGCGTTACGGTTTCACAACACATTTAACAGGCTTGGGCCATATTTCTCAACCTCACAAACAAAGTGGACTATGCCTGAACACACACAGACCTGTTGAGTTGCTGGATTAGAAAAGGGGGCAATAAGAGACAGAAGGCACGGTGGAGACTAATCCCACATTGCATATGGTGGACGATATCGAGAGAGGAAAAGTAGAAATTTTGACGATAAATTCAATTCCGTTAATAAGGTTAACTGGAACTGCATTGTTTCTCCCTATTTTTGGTGTAAAGAAATAGGTTGAGAGGAAACAAAACAACTTTTAGAATTCTTAGGATCTCTATTAGTATTACTTTCTCTGTTCCTACTTTTGAAGGTCCTCAGCATTAAGGAAGAATACAACATTACCATTTGCAGGAACAAAGAAAAGAGTGTGTATTAGCAATTAAGAGAGAAAATTTGAAGTATAAAAATGCCCCTAAATTAGGCAAACCCCTACATAACATTATTAATACTCATCACATGAAAGTCTTTACATCACCATTCATTTTATAACAACCCCTTCATTATTTTTCACCAAACAACCATGCATTTTAATTCCCGTGTGACTAGTGTGTGAAGTGAACAACCCCTCACTTTCTTAGCATACTTCTCCAACCTTTGGTTGGCTTTCCGATAATCCATTGTGAATATGATAGGAGCAAATATCTATGAGGTTCTACTTCTGCCTGTTTATTTGAAATGTACTGCGTAAATATGGTTTCCAACATATTATTATTATTTTTATAGTCTTATTAATCTGGTACCAAGCTGGTACAGAAGCAAGTACAAAGCATAACTACATAACTTCCACCAATCACACTAGAACTAGATACTGCCCCCCGAATAAGTACAGCCAAACCAAGTAACGATCCATCCTATTTTAAGTACTGCTAGAACACCATAAGATATATTGTTGATGCATTTCGTTAATGCTGATAAATTGGAAATTCTAAGTTAGCGTTTTCTTCTACTTTAGCCCATTCTACGGAGCACAGTCAGTCGCTTAATGGTCTGCCTGTTTCTTGTTTGATTATCACTGAACTAATGGTGGTCTTATCATATGTAATGGAGGCCATTTCTTTTTCAAGTAGTGATGTAGTTCAGGTCATGCCTTGTCTTTTGCATATGCTCTTGGAGATGTAGTTAAACAGAGGTCTTCTCAGCTTCCATAATTAGCTTGTACATTTTGATAATATATGATTGCTTTAGTAAACTTTCATTAGTGCAATTGATTAGTAGTATTGACTGTCTTATTTTATCTTGTAATCCTTCACCAACACGGAAACAACCTCCTCTATTCACCCCACCCTCCCTAGACCCTGCTTGTGGGATTAATGAATCCTTTACCAGTGAAAACTAAGTTACAGGGGTGTGTGGTGAATATTGACAAAATTTGCAAAGCAAATATTTCTTGTGTTTTAACTACTTTCAGTGGTTGACATCACTACTATTGCAACTTATAGGTCTCAAGTTTCCATTATTTTTCCATGTGAAAATAATCTTCTGTTGAATCTTTTTTACTTTTTGATCAATGGGGCATGCAAATTTTATTATTGTTTTTCTGCTAACGCTGATGGCTTCTTAATTAAAACGTTGCTAATTTCAATTCTTCAAATAAGTATAATTTGTGTGGCTGATAAGTGATTAAAGATTATATGTCAGCACTAACCACATGGTAATTGATGTTATGTGGAGATCACTTATGTTTGTTTTCAGTTATGTTTCAAGTTTGATGCATATGGAAATATGGATATGATCAACACTTTGAATGTTACCTTGTCAAAAATAAATAAATGATCAAATTTTGTGTGTTTTATATTGTAGGAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAGGTAAGTTTCCATTATTTATTTGACAAGTCTCCATCATACATTAATTCCTTTAGTCAGTTGACTTCAATCTTTAGTTGGTTTCTAGTCATGTCCTCTTTCATTTTCTATTCTAATTCAACAGAAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTGGTAAGTACAGGATATCAATTAATTCATAGTTAGTCCTGTGGTTTGTTATTGATTAAATCTAGGTGAGTTTGTAGGCTGTTGAGGAATTTGCTAGACATGAATCTGTACTCCCTGCTTTTCTAAATCTAGGTTAATTTTGAGGATGTTAGGGAGTTTTGTAGGTATGAATTTGTTGTTGCTGTTGTATATGTCAAAAAAGGCGCATCAACATCTATTAATAAACATTTCTTCAGTTAATAACGAGAATATTTTTTCTTGGGTTGGCTTTTGCTTAGCTGCAAATTACTAATTGTAGTTCTCAATTGTCCAAATGTGGTACTTGCTTAATTCTGATAGAATGCACATATGTGGCAAATGCACACAAGAGGTTCAGTTGTGTTGACAAAATGATGAAAGATGGGGAGCTGGTAGATGATGAGAAAATTATTAATGAACACACTCAAGACTTCTATTAAAGTATTTAGGGAGAATGAAGAAAGGAGATTAAACTGGAAGGATGAAGAACTGAAAAGGCTTCCTGATGAAGACAGAGAGTGGCTGCAAAGATCTTTTACTATGGAAGAACTGGAAGTTGTTATCAGATCTTTTAGAGGAGATAAGGCTCCATGTCCCGATGGGTGTATCTACACTTCTTCCTAAGATGCTGGAGCACAAAAAAAGATGATGTTTAAAGGACTGGAAATTTTCTATCAAAAGGATTATTTTGTTAAAAGTTTAAATGCTACTTTTATTGCTTTGATACCTAAAAGGAAGGGGCGGTTGAGGTGAAAGATTTCAGGCCTATCAACTTCCTTGGCCTGGGAGTGTATAAAATTATTGCTAAACTATTGGCTGAAAGGCTCAAACTGGTAATTGATAAGTTAGTGTCAGGACATCAGGATGCATTTATTAAAGTGAGGCAAATAGTTGATGCAACTTTGGTCGCCAATTTAAGCATTGAGAAACTAATGAAATAAAGAAGAGAGGAGCTGCTTGCAAGCTTGATCTTGAAAAGGCTTACGACCATTTTAACTGGTCATATTTATTAAATATTCGGAAACAAATAGGCGATAAATGGATTGAATGGATTTGTTACTGCAAATCTAGTGTAAAATTCTATATATTGATAAACGGGAGTCCACATGGTTTTTTAACTCTCAAAGAGGCTTGAGGCAAGGGGATCCACTTTCCTCCTATCTGTTTACTCTGGTGATTGAAGCTTTTAGTATGGTGGAGAAGCAAGCTGAAAAGTTGGGCTGGATATAAGACATGAGCTTTCAAAGAAATTGTGTTGATAGGGTTACCTTATCGCACATTCTATATGCTGATAGATGATACTCTTCTTTATCTTAGAGAGATTCTGGAAATTTTGAGGCAGTTATGGTTGAAAGTTAATCTGGCAAAGCGCAGTATTTTCAGCATTAATGCAGATGACCTCTGCCCTTCCATCCCTTGGATAGATTGAGAGGGGCTTTTGTTTTTTCATGTTGTCAAGGAACTAGCGGATATCCTGGGATGTAAGGCGGAAACGTTCCTCACTGTTTCTTTGGGGCTTCCCTGGGGGCGAAAAGGCAATGATCAAAGTATCTGGAATAAGGTGGATACCCTGATTTGGCTGGGCTAGTAACACACACACAAAAAAAAAAAAATCAGTTAAGAATTGTTATAGCTTATAGTATGTTACTGCAGTCAGTACTCAGGTCAGAATTGTGCTGCTTTTTGTTTCTTCTCCTGTATCATCTTGGTACCAATTAATAAAATCTCTACCTAATCAAAAAGAAGAAGAAAGAGAAGATAGAATGGAATTTCAGTTATGTGTTGATCCAAGCAAAATTTGATACTAAATGATTTCTTGTATTGCAGTTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATAGTCCGTCTTGCAATTTTTTGTCGGAATAATTTTGGTGAAAAAAATAGAAAATTCCTCCTTTTATAAACTGAGAATTCCAAAGCTTGGTTCTTTCTTTGCCTTTACCGGATAATTGTTTCTTTTTCTTTTGCTGGGGAAAACCCCGGAAAAAGAAAAAAATTTTTTTCTTTAAAAATTTTTTTTAAAAAAAAAAAAAAACAGAGAAGATGGGTGGGGGGGGCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG................................................................................................................................................................................AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA..........................................................................................................GGAAGGGATATTTTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAAAGTTGTAGGATGCCCTGGAAATGAAGGAA.........................................................................................................................AAAATGAGCATGATGTTGTTTGGTTTTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCCCAGTATTTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATAGTCCGTCTTGCAATTTTTTGTCGGAATAAATTTGGTTGAGACAATGAGAGATTACTCGTTTTATAAACTGATGATT-CAAAGCTGTGTTCTTTTTTTGCCTTTACTGGATTATTGTTT-TTATGC--TTGCTGTGGTAGCAC...........................................................TGAAGTTGAATATTTTTGCTTATATATTTTATACAATTGACATGTATGTCGTGGTTTACTTGAAATATAGACCCAGTTTTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305790" ref_strand="+" ref_description="SGN-E305790 [cLEX-14-B23]">
      <seq>ttgacattaactttcctgaaggtccttttggtacaaaggaagcgcctgctgttgtcaaatcctactatgatagaagagttgtaggatgccctggagatgaaggagaagatgagcatgatgttgtttggttctggctcgagaagggcaagccacatgaatgcccagtatgctcacagtattttgtgttggaagtggttggacctggaggacctcctgatggacatggcattgatgatgagggtcatcattgatagtccgtcttgcaattttttgtcggaataaatttggttgagacaatgagagattactcgttttataaactgatgattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55680" stop="63743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55980" g_stop="56017" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61189" g_stop="61255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="105" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61256" i_stop="61376" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61377" g_stop="61456" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="185" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61457" i_stop="63298" i_length="1842">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63299" g_stop="63444" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="331" r_length="146" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E305790" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55980" e_stop="56017"/>
          <exon e_start="61189" e_stop="61255"/>
          <exon e_start="61377" e_stop="61456"/>
          <exon e_start="63299" e_stop="63444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAGGTTAGTGTGGAACTGTGGGTTTCCTAGTAACTTTTGGTGCTAATAGGCATTAGTTATTGCCCCTTTTGCTTTAGTCATCATTATTGTTGATCACTAAATTGTTTTGTCTTTTATCCAGATTAGTTATTCTCATCTGATGCATAACGATTACTATATCATGTGATTGGTCATTCTCTTATTGACAGGGATAATGAGTAATGAGCAATCATTGGAAATGTTTGGAAGTAGTTGTTTTTAGGTGTTCTTTTGAGTGTTAGGTTCTTCTGAGAAAATTCAATTGAAGATGAAAGCAAGTCAGATAAAAATGAGCAGTGTAATATATGTTCTCGTAAAGTAACATCTGAGTTGTGAATATATTTTAGTTTGCAATCCGAGTCTGAGGAATATGTTTTGGTTTTAACTATTACTCCAGAATGATTATGGAGTTCTATTAAGCTAAAGGCACGACTTGGATCAATCTAAACCAGGGTTATGTTTTTCTTAAGAGGCTGTTCCATTGTTCCAAATTTTAAAGCTGTAAACAACAAATATTTCATTATCCGAAATAGGACCTGGATCCGCCTTGCTATTTCTCGCTTCTTTACTAGTCATAGTTATGTGCTTACTTCAGGAAAAGGGAGGATTGAGGAGAAGAGAAAGGGGTATGATGGATGGTTGATTTTGAATATTTGTACTTTTGTTCATGTTGGTTGGGGCATGAGTGAAAGAGAAGTAAATGAGCTTGTCTCACTTTCCCAGTCTAATCTAAAGAGATTAAATAGGATTAGCTGGAATTGCAAAGTCCCCTCATTTTTTCAATATTAAATAGGATTAGCTGGAGTTGCAAAGTTCCCTCATTTTCGATTGGACGATTCCTAACCTAACCTCTTCGTGCTCCAAGTCTCCAACATCTTGTGAAAGCATGTTTTGGATACACATTAACCCTGCTGGTTTCCAAAATTAATATACGACAACTTTGCCTGAACTTCAAGCGAGTTGGGTTAGCTGTATGAGTGTTTTATGTTTCTTTCCCTCTGCTTGGTTAAGTTAATTCCATTACTCAAACTTAGAAATAATCAAAATTCAGGGGTTATCTGAACCTAAACATTTCTAAATCTGAAACTTATCTTTGCACTTACAATTGAAAAGGCTCTTAATGTCAAAGATAACGTAAGTGCACTAACACGACAAAGTAATCCTTATTAATCTCATACTTTCACTTTTAGTCCACCCCAAAAGGAATAAAAACTAACTTTTTTCATTTTTACCCTAAATGGATGATTTATAGCTACACAAATATTGAAGATTTATTTTAGACCACATATTTCAAAAATCTTTCCTTTTTTTTTTGATGAAGTAAATGTTTCATTGAAGGCATCAAGAAGATGCAAATTAGTTACATAAGTAGAGTCTTTCCTTTATTTCTTTAACTTCATTTCAAGTCAAACGGTGCCACATAAATTGGAACAGAGAGAGTAGTTGGTATCACATATGCAAATCTTTTGCTTTTGTATGTTCTGCTGATTGTGTTCGGTCATGTGCTATTCTATTTGAGAGACCGCGACCATTTCTAATAACTTCCCCTATGAAATTTTATGCTGCCACTTTTCTCCTTTAATGTATCAAAATCATAGTGTGGCAACTAGAGGTCCGTGCATTTGGAAGATATACCAACCTTTTCTTGCTTTATCCTCTACGTGTGTTAGATATAGTTGCTTTGGAATGTAATCATTTCTAAGCTAATCTTTATCTTAGTGACTATACATCCATTTTAACATCCTCAAGTCTTACTTTGTCTCAGTAGTAGCTTGGTATTGAGTTTTCATTGATAAGATACTTATAATTATAAAAAAAATTCATTGACAATTTTCTTGTGGATATGGTCTGCTCTCTTTTACAACATTTCTGGTTCCATCATCATTTTAATGAACTTGTCTTCATTTTGGTAGGTATCTACCTAGCACATATTACTCTCGTAACACTGTCATATTTAGCAATCCTACTTTAGTTTTATATATAAAGCATTCTCATGGAATATTGAACATATATATCTAGATATGTATTTCGACACCATAATATTGTCTAATCTTACCTCAATTTTTTTTTATTGAGCTAAACTTGCAGTTTTTATTGTATACTAAAGCCCTAAGGGGTAGTTTGGAACGCGATTTAGTTATATGGGGATTGTACTGTGAAGATTATGATGTTCTGATTAAATAATAATGCTTAGTAGTCAATCAAGTGTATTGAGAAGCATGATGTCTTAGTTTCAAATCTCCTCAGAGACAAAATACACTAGGTAATTTCTTCCCATTTGTTCTAGAATTGGTGGATAAAGTTATCTAGCACATACCCTTCTGGATGACCCAGTGGTTCGAGCTTAGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGTGAAAGCAAGTGGTTTGCCTTCTGGGCCGAGCTCGTCGCACCAGGCTTGCCTAGTGCAGGTTATCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCTGTTGTCATCAAAAAAAAGTTATCTAGTAAATGATGTTGTTGGGAGGTGACATGTATCCCACAAAATTAGTCGAGGTGCGTGAAGTTGGCCCGGAGTAATGTTAGTATTGGTACTTATGGAGTTGAGGTTTAGAGGAATATTAGAAACATGTGGCCCAAATTAGAGGCTAATTTGTACATACAGGTGGGAGATGGTAGGTGAGCGAAATTCTGGGGAGTTGCTGGGATAAATAGATACCTTTGATGGACGATCTGTTCATGCTATGCAATAACCTAGAGGCAAAGATCAAGAACTGCTGGATAATACAGGGGCAGAATCTTTCCTTCAGCAGATTCTACTGAACGATTGAGATGTAGAGAGAGCAGCCAAACTGCTAGTAGAAACAGGGAATTCCCCGGCACCAACTGTTCCTGATTCAGCGATGGTTACAGACTTACAGTTTACACAATGAAGATGACACTTTCACTATCAATAGGGCCTATAAAATAGAAAACAATCAAAATAGAAGAAACAACAAAGATTTTGGTTGTGGAGACACTTAGCACCAACCAAGATAAAATGTTTTACATGATTGGTTGCTAGAAGGGACTGCCTGACCCATGAAGTCCTGAAGAAGATAAGAGCCAGCAAAGTTTGTGGAGGAAGGTGTGGAGAAACTTAGCACCAAGCCACCAACCAAGTTAAAATGTTTTACATGGCTGGTTGCTAGAAGAGTCTAGTATCTTGGTGTTCGTTATATGGGAAGATAAAAGAGACCAATAACCACTTATTGTTGCGTTACGGTTTCACAACACATTTAACAGGCTTGGGCCATATTTCTCAACCTCACAAACAAAGTGGACTATGCCTGAACACACACAGACCTGTTGAGTTGCTGGATTAGAAAAGGGGGCAATAAGAGACAGAAGGCACGGTGGAGACTAATCCCACATTGCATATGGTGGACGATATCGAGAGAGGAAAAGTAGAAATTTTGACGATAAATTCAATTCCGTTAATAAGGTTAACTGGAACTGCATTGTTTCTCCCTATTTTTGGTGTAAAGAAATAGGTTGAGAGGAAACAAAACAACTTTTAGAATTCTTAGGATCTCTATTAGTATTACTTTCTCTGTTCCTACTTTTGAAGGTCCTCAGCATTAAGGAAGAATACAACATTACCATTTGCAGGAACAAAGAAAAGAGTGTGTATTAGCAATTAAGAGAGAAAATTTGAAGTATAAAAATGCCCCTAAATTAGGCAAACCCCTACATAACATTATTAATACTCATCACATGAAAGTCTTTACATCACCATTCATTTTATAACAACCCCTTCATTATTTTTCACCAAACAACCATGCATTTTAATTCCCGTGTGACTAGTGTGTGAAGTGAACAACCCCTCACTTTCTTAGCATACTTCTCCAACCTTTGGTTGGCTTTCCGATAATCCATTGTGAATATGATAGGAGCAAATATCTATGAGGTTCTACTTCTGCCTGTTTATTTGAAATGTACTGCGTAAATATGGTTTCCAACATATTATTATTATTTTTATAGTCTTATTAATCTGGTACCAAGCTGGTACAGAAGCAAGTACAAAGCATAACTACATAACTTCCACCAATCACACTAGAACTAGATACTGCCCCCCGAATAAGTACAGCCAAACCAAGTAACGATCCATCCTATTTTAAGTACTGCTAGAACACCATAAGATATATTGTTGATGCATTTCGTTAATGCTGATAAATTGGAAATTCTAAGTTAGCGTTTTCTTCTACTTTAGCCCATTCTACGGAGCACAGTCAGTCGCTTAATGGTCTGCCTGTTTCTTGTTTGATTATCACTGAACTAATGGTGGTCTTATCATATGTAATGGAGGCCATTTCTTTTTCAAGTAGTGATGTAGTTCAGGTCATGCCTTGTCTTTTGCATATGCTCTTGGAGATGTAGTTAAACAGAGGTCTTCTCAGCTTCCATAATTAGCTTGTACATTTTGATAATATATGATTGCTTTAGTAAACTTTCATTAGTGCAATTGATTAGTAGTATTGACTGTCTTATTTTATCTTGTAATCCTTCACCAACACGGAAACAACCTCCTCTATTCACCCCACCCTCCCTAGACCCTGCTTGTGGGATTAATGAATCCTTTACCAGTGAAAACTAAGTTACAGGGGTGTGTGGTGAATATTGACAAAATTTGCAAAGCAAATATTTCTTGTGTTTTAACTACTTTCAGTGGTTGACATCACTACTATTGCAACTTATAGGTCTCAAGTTTCCATTATTTTTCCATGTGAAAATAATCTTCTGTTGAATCTTTTTTACTTTTTGATCAATGGGGCATGCAAATTTTATTATTGTTTTTCTGCTAACGCTGATGGCTTCTTAATTAAAACGTTGCTAATTTCAATTCTTCAAATAAGTATAATTTGTGTGGCTGATAAGTGATTAAAGATTATATGTCAGCACTAACCACATGGTAATTGATGTTATGTGGAGATCACTTATGTTTGTTTTCAGTTATGTTTCAAGTTTGATGCATATGGAAATATGGATATGATCAACACTTTGAATGTTACCTTGTCAAAAATAAATAAATGATCAAATTTTGTGTGTTTTATATTGTAGGAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAGGTAAGTTTCCATTATTTATTTGACAAGTCTCCATCATACATTAATTCCTTTAGTCAGTTGACTTCAATCTTTAGTTGGTTTCTAGTCATGTCCTCTTTCATTTTCTATTCTAATTCAACAGAAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTGGTAAGTACAGGATATCAATTAATTCATAGTTAGTCCTGTGGTTTGTTATTGATTAAATCTAGGTGAGTTTGTAGGCTGTTGAGGAATTTGCTAGACATGAATCTGTACTCCCTGCTTTTCTAAATCTAGGTTAATTTTGAGGATGTTAGGGAGTTTTGTAGGTATGAATTTGTTGTTGCTGTTGTATATGTCAAAAAAGGCGCATCAACATCTATTAATAAACATTTCTTCAGTTAATAACGAGAATATTTTTTCTTGGGTTGGCTTTTGCTTAGCTGCAAATTACTAATTGTAGTTCTCAATTGTCCAAATGTGGTACTTGCTTAATTCTGATAGAATGCACATATGTGGCAAATGCACACAAGAGGTTCAGTTGTGTTGACAAAATGATGAAAGATGGGGAGCTGGTAGATGATGAGAAAATTATTAATGAACACACTCAAGACTTCTATTAAAGTATTTAGGGAGAATGAAGAAAGGAGATTAAACTGGAAGGATGAAGAACTGAAAAGGCTTCCTGATGAAGACAGAGAGTGGCTGCAAAGATCTTTTACTATGGAAGAACTGGAAGTTGTTATCAGATCTTTTAGAGGAGATAAGGCTCCATGTCCCGATGGGTGTATCTACACTTCTTCCTAAGATGCTGGAGCACAAAAAAAGATGATGTTTAAAGGACTGGAAATTTTCTATCAAAAGGATTATTTTGTTAAAAGTTTAAATGCTACTTTTATTGCTTTGATACCTAAAAGGAAGGGGCGGTTGAGGTGAAAGATTTCAGGCCTATCAACTTCCTTGGCCTGGGAGTGTATAAAATTATTGCTAAACTATTGGCTGAAAGGCTCAAACTGGTAATTGATAAGTTAGTGTCAGGACATCAGGATGCATTTATTAAAGTGAGGCAAATAGTTGATGCAACTTTGGTCGCCAATTTAAGCATTGAGAAACTAATGAAATAAAGAAGAGAGGAGCTGCTTGCAAGCTTGATCTTGAAAAGGCTTACGACCATTTTAACTGGTCATATTTATTAAATATTCGGAAACAAATAGGCGATAAATGGATTGAATGGATTTGTTACTGCAAATCTAGTGTAAAATTCTATATATTGATAAACGGGAGTCCACATGGTTTTTTAACTCTCAAAGAGGCTTGAGGCAAGGGGATCCACTTTCCTCCTATCTGTTTACTCTGGTGATTGAAGCTTTTAGTATGGTGGAGAAGCAAGCTGAAAAGTTGGGCTGGATATAAGACATGAGCTTTCAAAGAAATTGTGTTGATAGGGTTACCTTATCGCACATTCTATATGCTGATAGATGATACTCTTCTTTATCTTAGAGAGATTCTGGAAATTTTGAGGCAGTTATGGTTGAAAGTTAATCTGGCAAAGCGCAGTATTTTCAGCATTAATGCAGATGACCTCTGCCCTTCCATCCCTTGGATAGATTGAGAGGGGCTTTTGTTTTTTCATGTTGTCAAGGAACTAGCGGATATCCTGGGATGTAAGGCGGAAACGTTCCTCACTGTTTCTTTGGGGCTTCCCTGGGGGCGAAAAGGCAATGATCAAAGTATCTGGAATAAGGTGGATACCCTGATTTGGCTGGGCTAGTAACACACACACAAAAAAAAAAAAATCAGTTAAGAATTGTTATAGCTTATAGTATGTTACTGCAGTCAGTACTCAGGTCAGAATTGTGCTGCTTTTTGTTTCTTCTCCTGTATCATCTTGGTACCAATTAATAAAATCTCTACCTAATCAAAAAGAAGAAGAAAGAGAAGATAGAATGGAATTTCAGTTATGTGTTGATCCAAGCAAAATTTGATACTAAATGATTTCTTGTATTGCAGTTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATAGTCCGTCTTGCAATTTTTTGTCGGAATAATTTTGGTGAAAAAAATAGAAAATTCCTCCTTTTATAAACTGAGAATTCC</genome_strand>
        <mrna_strand>TTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAG.........................................................................................................................AAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCATTGATGATGAGGGTCATCATTGATAGTCCGTCTTGCAATTTTTTGTCGGAATAAATTTGGTTGAGACAATGAGAGATTACTCGTTTTATAAACTGATGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746941" ref_strand="+" ref_description="SGN-E746941 [GI|47104341]">
      <seq>gacaaattcctgatttttttattctcaagatgctctgagccacacgcgcttctccctctcccaccacaatttcttctcctaaaacacgcagtgcagccattgcagcgctacaccattttcctctgcatagtgtcctctctcacagtctcgtcagataatgagtttcggaaagaagatcaggatagggctcgatgggtttggaagaattaatcgtttcatcgcgagagcagctcacagagacgaaaacaagctttcaaatgcaagcactgtgcttaagacttccacctttaagcatgactcagatggttttggatctgctgggttaaagtctttcagagcatttgcagtggttggtgctggaatctctgggctacttagctttgcaggagttgcttattctgatgaggccgaacatggcttagagtgtccgagctatccttggcctcacgaaggcattctcagctcttatgaccatgcttcgatacgtcgaggtcatcaggtttaccagcaagtgtgtgcgtcctgccactcaatgtcgctaatttcctaccgtgatcttgttggtgttgcatacactgaagaagaaactaaggccatggcagcagaaattgaggtggttgatggccctaatgatgagggtgagatgttcacccgccctgggaagttgagtgatcgttttccacagccttacccaaatgaagcagctgcaaggtttgcaaatggtggggcttatcctcctgatctaagtcttatcactaaggcccggcataacggtcaaaactatgtttttgctcttctaactggctaccgggaccctcctgcttgtgtctcgattcgggaaggtcttcactataacccttacttccctggtggagctatagcaatgcctaaaatgcttaatgatggtgctgttgagtatgaagatggtatacctgcaactgaggcacaaatgggaaaagatgttgtgtcgttcttgtcatgggctgctgagccagaaatggaagagagaaagctgatgggtttcaaatggatattcgtcttatcacttgcacttctccaagcagcttactaccgtcgcctgagatggtctgtcctgaaatctcgcaaattggtcctcgatgttgtcaactgatttcattcaaatcacactacgtgaactaatagtaagcgtttccttttgtgtactgtatgtgatgggggcacaaggaatactgatattattgcccaatgatttgaattatcagtgttataatatacaatgtagactctagacaatagatcagccacttggagctattcttttgaggggaaaataaatagccgatgtactatttacagtattgtctataataaatctttgttataggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64607" stop="72010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64907" g_stop="65067" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65068" i_stop="65193" i_length="126">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65194" g_stop="65226" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="194" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65227" i_stop="65343" i_length="117">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65344" g_stop="65441" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="292" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65442" i_stop="69947" i_length="4506">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69948" g_stop="70135" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="480" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70136" i_stop="70287" i_length="152">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70288" g_stop="70567" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="760" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="832" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70935" g_stop="71051" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="949" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71132" g_stop="71197" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="950" r_stop="1015" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="71357" g_stop="71709" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1016" r_stop="1368" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1369" polyA_stop="1382"/>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E746941" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1368</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64907" e_stop="65067"/>
          <exon e_start="65194" e_stop="65226"/>
          <exon e_start="65344" e_stop="65441"/>
          <exon e_start="69948" e_stop="70135"/>
          <exon e_start="70288" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71051"/>
          <exon e_start="71132" e_stop="71197"/>
          <exon e_start="71357" e_stop="71709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAATTCCTGATTTTTTTATTCTCAAGATGCTCTGAGCCACACGCGCTTCTCCCTCTCCCACCACAATTTCTTCTCCTAAAACACGCAGTGCAGCCATTGCAGCGCTACACCATTTTCCTCTGCATAGTGTCCTCTCTCACAGTCTCGTCAGATAATGAGTACGTCCTTTTTATCATATCTGGATTTCGATTTTATTCATAGAGATCTCAACTAGTTTGGGATTAAATTTTTGTTTGATTGATTTAGTAGAAAATTAGCTAATTCTTATGATTTTAATAAAACAGGTTTCGGAAAGAAGATCAGGATAGGGCTCGATGGTATAAACTCATCACCATTCATGGATTTCCTTACATTTTTATTAGTTTTATCAAATTTTGCTCATCATTTACACCTGAAACTGTAAAGTTTGTTGCTTTATTTGTTTATAAATTCAGGGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCAAGCACTGTGCTTAAGACTTCCACCTTTAAGGTATTTTTATATATGCCCCACAGTTAAATGCTACAACTTAGAGGAAACAAAGGATCATATAGGGGAATCAATTAGGTGGGATTACGATTTTGTTGTTGTCACACTTACATTAGAAATGCTTTATCCAAGCCGAGGGTTATCAAGGACAACCTCTCTATCCGTATGAAGTAGGCGTAAGGTCTCCGTATACTCTATCCTCCCCATTTACAAGCTTGTATACTAGTATAGGAATGTCAATTGTCAAGCTATTTGTCACTGTTGGGAATAGGGTGCAATGTATATAGAGGGTTCATATAGACAATTTAAGTAGTTTGTGGTTGAGATGTAGTTGATTGATGAGTCTAGAGCCTAAAGGGCAAACAAATTGTTAAAGAAACCAAAGGGGCAAAGGTGCAGCCCCCCGACCTTGGCTTCTGTCCCTTAACAGATGTGAAATAAACATCAAAAGGAAGGCACATGGCCCCACACGCCTTATAAGGCATTGAGGCCCTTGGGCTTTACACCTTATTGGTGGGCCCCTTTCCCTTCTTTACCTAAGGCTTCCTCTTTCCCAAACCCTCCTCCCACCCATAATTTGTTCCAATGTCTCCGTGTAGGGTAAGAACTATATCATGTTAATAGATTAACATAAACGCCATGTCAAGTCTTGTAGCATTAGCAAGAGACGTAAGTCCACCAATTGCACTAAGACGTGGTACAAAAGGATCAAGAGGTTCCTTATTCTCTTCTTGAGGTTGAAACGGATCTTTACTTCAAGTGATCGAACAACAGACAACAATTGGAGTACTTAAAGGATGTGTCTTGTCCATGTAAAATCGTTTCAAAATTTTCTTAGTATAGACAAATTGATGGATAAAGACCCCGTGTGCTAAATGTTCAATATGCTGACCAATACTAAGTTTTTTATTTCCAAAATATATGAAATTCTTTCTTTAGATACTCAATTGCTTTTTGGACCTCTTTTGTAGTTCCAATGAGATTTATGTCATCAATATAAATAAAAAGTACTCCTAACAAATTCTAATGTTCTTTTCTTGATAAAAATATAAGGACAAATGACACCATTTATATAACCTTCTTTTATCAATTATGGACTGAGGCGATTATAACTGTATAATGAATTTTGTAATCTGATTGAGTATTTCTTGAGACTTTGAACTATATGCTTTAGGAATTTTTAATCCTTTTAGGATTTTAATATAAATTTCATTATGAAGCTGTAACCACATCCATTAGGTTTATTTCAAGCTTTTCATGTAGAACTAAATTGATGAGATATCCAAAAGTTATTGTAATAATCGGTGAATGTGACACTGAGTCTTTGAAAGAATCCTTGCGTAACAAGGCATGCCTTGTATCTTACAATTTTATATTTCTCATTTCTTTTTCGCTTGAGGACCCATTTATAGCCAACTGATTTTACACTATTAGGCGTTTGGAAACATGTTCCCAAAATCTCACATTTAGCAAGTGAGTTCAACTCTAATTGAATTGCCTCTTGCCATTTTGGCCAATCACAACTATGTCAGCATTCTTCGACAAATAGAGGTTCAAGATCCTCAATGTCTTGCATATTATTTAGTGCAACATTGTATGCAAAAACATTATCCACCATAATTTTCAATCAATTTAATTCTATCCAATCACCAGTAAAATATATTGATAATTCTTTATTCACTTCAGTCTCAAGTTCATTGATTTCTTTAGAAATATCAAGATTAATCAAATCTTGAATCTCTTTATGAGATTTTTTATGGTGTCATATGATCATTTTTCGTACTTCTTTTTCTAGGATTTTTATCCTTTGAACCCAATGGTGTACCACATTTCAAATGTGTTGAAGATTCAGAAGCTCTCACACTAGTAGATAGATGAAACTTTCGGAACATCAATTTCGATAGGCAATTCTCTGCTCGAATATGTGACTTAGTTATCCTTTTCAAATCAGTAAACACGTCCGGCATTTGATTTGCTATTTTCTGTATTGGATGATCTTTTGGACCTTACGTTCACATATAGGGGAACTGCTATATCATGGTGATCACGGAGCAGGCTATTGTTGCCACTTCTCTAAATCTTGCTGAAATAATAGCTATTCATAAAACAAGCAGCGAATGTGTATGGTTGAGATTAGTAATACATTTCATCAAAGAAAAATGTAGTCTGGAGTATGATATTAAGGTGTCCACAATCTTACTAGAAGACAATGTTGTAGACATAACCCAAGTAAAATGAGGGTTCATTGAAGGAGATAGAACAAAATATATTTCACCAAAATTATTCTTCAGACATGATCTCCAGAAGAACAGTGATGTTGATGTGCAACATTTCCGTTCAAGCAATAATCCAATGGATACATTCACCAATCCTTACCAACTTCAACTTTTGAAAAGATGGTATACAAGATTGGGATGCGAAGACTTAACCAACTGTATTGTGTTCTTTATTCGGGGTAGTACAATACACAGTGTACTCTTTTTTTCTTAACCAAGGTTTTAGCCCTTTGGGTTTTCTTAGTAAGATATTTAGTGAGGTAGCAAACTATGCGTATTAAGTATAACTATATATATTTGTCCTTTCACTAGAACTTCTCTTTTACATGAACATCCAAGGGAGAGTGTTGTAAAAGATATGGATGCTCATGGGACCTACTAATGTTTACTTCTTGCTTTCACTTTGGCTATAAATAGCCTTTTCAAACGAACAAAAGATATACAAGAACAACTTTTTCTCTTACTCTCCCCCCCTTTTGTTAAGAATAGTTCTCTCCCTCTCTCCTTCTTGTTATTTTAGTTTATCACTTCTGTATTTATTTTAATACCAACAAATGATAGTGATAAACTAAATTAACAAAAAGTTGAGTGAGGTAGAGAACAATCTGTTCTTGTTTTTCTTTTGTTTGTTTGAAAAGACTATTTATAGCCAAAGTGAAAGAAACAAACTTGTTTCTTGGCCACCAATGAGGAGATTGATCGGGTAAGTGAAAATAGGCCATAAATGGGTGGGTCTCATACATGACATCCACCCTTATTTTACAACACTCCCCCTTGAATGTCTAGGTAAAAGAAAGGTTCTAGTGAAAGTTTACCATTATATGTGCAATTTCTTTTAGTAAGCTTCAGGTTTACCATGACATGAATTTCATATTAATAAACGTCTAGTTTACTGTGGCATGTGATTTCATCATGCTTATATTTGTAGTACATTAGCTCTTCTGGTGTCCTTGATAATTAATTTTGTACTATCAAATATTACTTGGATACTGCTGGTACCATAAAAGAAGCTTAACTAGAAGGGCAGTGCAAACCTGAAAGGATAGTGGAGAGTTGGATCATGGTTTTTGACTCCTAAGGGAAGTGAGTTTTCCATATACTTTCTGCAAACAATCTTCTCGCATAGTTGTTCAAAGAACCTGGTTCTTTGAGTGCTTAATATGCAGCCAAACTAACACTACGGATACTACATGATATTTCATGTATTCCTATAGTTAGCTAGAGAAAGCGATGATGGATCTCGATGCATGGTAGAAGAGCTACTTGACCATGTTTCAATATCTCAAAATGAAACTAAAGAACTTGATTTCCATTTTCTTGTGGTGGGTCTGCCATAAGAATAAACGTGAACCCAGCGCTGCATTTACCCCTGGCAGAGACTAGTAACTATTTGTCCTACAATCTGCACATCATTAGTTTCACAAGAAAATATTAAATAAGAGTGGTGAAGAGGAACTTGAGATGTTTCGAAGACAAATACAGTTCCATCCAGATGATAAAGGCTAACAACTTTTTGGTTTAATAGAACTACTGGAATCCCTACATGTTTAAGTATGTGATGCACTTTTGTATCGTTATACTTTCCACATTGTGCAGACTGCAGAGTTCCCAGCACACTCTTACTGCTGTTTTGAATACAATCCTAACCATTTCAGAAAGAGTAAAAAGCAATGCATAGTGGTAGATGGTTCAAACGTGTCAGTAGACATCGCAAATTTCACTATCAGTTTTGTGAATCGCTTGAGACTTATTGTTGTGCCCAGTTTGGTTTACATGATTTGATTCTTCAGATCCCATATTTCTTTGGTGAATATAATTGAGAGTGTCATTCATATAACTACTAATTCATATATCTATGAGGATGTAAACTATGCAAAATTAGTTTCTCATGCCATTTCATCCCACAAGGAGCAAAATTTCTTATTGGAAGAGCCATCATGCAGGTGAACCTCTAATACGAGTAAAATAATGTGTATCCTAGTGGTGCAGGGTATAAACAATTGTAATGTACCCTTTAATTGTCTTTTTTTCTATCTTTTTGGTGTTATATGAACATATGCTAATGACTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGCTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGTTCTGTTGAATCCTTTACATTAGCGTTGTATGGTCAATAAATTTTATGATCATGGAATAATTTACAACTGATTAAATTACTTTGTTATTTGTTTCAAAGCATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTCGTGAGTATATGCTGTGCTGCCACATGATAATTAAAGTTCATTGGAGGCTACAGAAAACATTTCAACCTTTTGTTTATTCAAAACTAAATTTAGCATGAGTCTTCAATGAAATGGATACCCCATTTAGTTTAACGCCTTTATTTGCCTGACAGGATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTGGTAAGTCGCAATCTTCCATTTGGTCCTTCTCTTGCAGTATGATAGTCACTATATTCAACCTCTGCATTTTGAATGTTGAACTGATATTGGATCCTCATTGACAGTTGAATGTGCCATTAAATGAATTTACTGACCTCTTGGGTATTGTAATTTCTACAGATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGATTTCATTCAAATCACACTACGTGAACTAATAGTAAGCGTTTCCTTTTGTGTACTGTATGTGATGGGGGCACAAGGAATACTGATATTATTGCCCAATGATTTGAATTATCAGTGTTATAATATACAATGTAGACTCTAGACAATAGATCAGCCACTTGGAGCTATTCTTTTGAGGGGAAAATAAATAGCCGATGTACTATTTACAGTATTGTCTATAATAAATCTTTGTTATAGGA</genome_strand>
        <mrna_strand>GACAAATTCCTGATTTTTTTATTCTCAAGATGCTCTGAGCCACACGCGCTTCTCCCTCTCCCACCACAATTTCTTCTCCTAAAACACGCAGTGCAGCCATTGCAGCGCTACACCATTTTCCTCTGCATAGTGTCCTCTCTCACAGTCTCGTCAGATAATGA..............................................................................................................................GTTTCGGAAAGAAGATCAGGATAGGGCTCGATG.....................................................................................................................GGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCAAGCACTGTGCTTAAGACTTCCACCTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTC........................................................................................................................................................GATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG...................................................................GCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTTGTGTCTCG....................................................................................................................................................................................................................................ATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAA................................................................................ATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTG...............................................................................................................................................................ATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGATTTCATTCAAATCACACTACGTGAACTAATAGTAAGCGTTTCCTTTTGTGTACTGTATGTGATGGGGGCACAAGGAATACTGATATTATTGCCCAATGATTTGAATTATCAGTGTTATAATATACAATGTAGACTCTAGACAATAGATCAGCCACTTGGAGCTATTCTTTTGAGGGGAAAATAAATAGCCGATGTACTATTTACAGTATTGTCTATAATAAATCTTTGTTATAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729623" ref_strand="+" ref_description="SGN-E729623 [LA21CD10]">
      <seq>ctgatttttttattctcaagatgctctgagccacacgcgcttctccctctcccaccacaatttcttctcctaaaacacgcagtgcagccattgcagcgctacaccattttcctctgcatagtgtcctctctcacagtctcgtcagataatgagtttcggaaagaagatcaggatagggctcgatgggtttggaagaattaatcgtttcatcgcgagagcagctcacagagacgaaaacaagctttcaaatgccagcactgtgcttaagacttccacctttaagcatgactcagatggttttggatctgctgggttaaagtctttcagagcatttgcagtggttggtgctggaatctctgggctacttagctttgcaggagttgcttattctgatgaggccgaacatggcttagagtgtccgagctatccttggcctcacgaaggcattctcagctcttatgaccatgcttcgatacgtcgaggtcatcaggtttaccagcaagtgtgtgcgtcctgccactcaatgtcgctaatttcctaccgtgatcttgttggtgttgcatacactgaagaagaaactaaggccatggcagcagaaattgaggtggttgatggccctaatgatgagggtgagatgttcatccgccctgggaagttgagtgatcgttttccacagccttacccaaatgaagcagctgcaaggtttgcaaatggtggggcttatcctcctgatctaagtcttatcactaaggcccggcataacggtcaaaactatgtttttgctcttctaactggctaccgggaccctcctgctggtgtctcgattcgggaaggtcttcactataacccttacttccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64616" stop="71270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64916" g_stop="65067" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65068" i_stop="65193" i_length="126">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65194" g_stop="65226" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="185" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65227" i_stop="65343" i_length="117">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65344" g_stop="65441" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="283" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65442" i_stop="69947" i_length="4506">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69948" g_stop="70135" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="471" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70136" i_stop="70287" i_length="152">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70288" g_stop="70567" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="751" r_length="280" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="823" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70935" g_stop="70970" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="824" r_stop="859" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E729623" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64916" e_stop="65067"/>
          <exon e_start="65194" e_stop="65226"/>
          <exon e_start="65344" e_stop="65441"/>
          <exon e_start="69948" e_stop="70135"/>
          <exon e_start="70288" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="70970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTTTTTTATTCTCAAGATGCTCTGAGCCACACGCGCTTCTCCCTCTCCCACCACAATTTCTTCTCCTAAAACACGCAGTGCAGCCATTGCAGCGCTACACCATTTTCCTCTGCATAGTGTCCTCTCTCACAGTCTCGTCAGATAATGAGTACGTCCTTTTTATCATATCTGGATTTCGATTTTATTCATAGAGATCTCAACTAGTTTGGGATTAAATTTTTGTTTGATTGATTTAGTAGAAAATTAGCTAATTCTTATGATTTTAATAAAACAGGTTTCGGAAAGAAGATCAGGATAGGGCTCGATGGTATAAACTCATCACCATTCATGGATTTCCTTACATTTTTATTAGTTTTATCAAATTTTGCTCATCATTTACACCTGAAACTGTAAAGTTTGTTGCTTTATTTGTTTATAAATTCAGGGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCAAGCACTGTGCTTAAGACTTCCACCTTTAAGGTATTTTTATATATGCCCCACAGTTAAATGCTACAACTTAGAGGAAACAAAGGATCATATAGGGGAATCAATTAGGTGGGATTACGATTTTGTTGTTGTCACACTTACATTAGAAATGCTTTATCCAAGCCGAGGGTTATCAAGGACAACCTCTCTATCCGTATGAAGTAGGCGTAAGGTCTCCGTATACTCTATCCTCCCCATTTACAAGCTTGTATACTAGTATAGGAATGTCAATTGTCAAGCTATTTGTCACTGTTGGGAATAGGGTGCAATGTATATAGAGGGTTCATATAGACAATTTAAGTAGTTTGTGGTTGAGATGTAGTTGATTGATGAGTCTAGAGCCTAAAGGGCAAACAAATTGTTAAAGAAACCAAAGGGGCAAAGGTGCAGCCCCCCGACCTTGGCTTCTGTCCCTTAACAGATGTGAAATAAACATCAAAAGGAAGGCACATGGCCCCACACGCCTTATAAGGCATTGAGGCCCTTGGGCTTTACACCTTATTGGTGGGCCCCTTTCCCTTCTTTACCTAAGGCTTCCTCTTTCCCAAACCCTCCTCCCACCCATAATTTGTTCCAATGTCTCCGTGTAGGGTAAGAACTATATCATGTTAATAGATTAACATAAACGCCATGTCAAGTCTTGTAGCATTAGCAAGAGACGTAAGTCCACCAATTGCACTAAGACGTGGTACAAAAGGATCAAGAGGTTCCTTATTCTCTTCTTGAGGTTGAAACGGATCTTTACTTCAAGTGATCGAACAACAGACAACAATTGGAGTACTTAAAGGATGTGTCTTGTCCATGTAAAATCGTTTCAAAATTTTCTTAGTATAGACAAATTGATGGATAAAGACCCCGTGTGCTAAATGTTCAATATGCTGACCAATACTAAGTTTTTTATTTCCAAAATATATGAAATTCTTTCTTTAGATACTCAATTGCTTTTTGGACCTCTTTTGTAGTTCCAATGAGATTTATGTCATCAATATAAATAAAAAGTACTCCTAACAAATTCTAATGTTCTTTTCTTGATAAAAATATAAGGACAAATGACACCATTTATATAACCTTCTTTTATCAATTATGGACTGAGGCGATTATAACTGTATAATGAATTTTGTAATCTGATTGAGTATTTCTTGAGACTTTGAACTATATGCTTTAGGAATTTTTAATCCTTTTAGGATTTTAATATAAATTTCATTATGAAGCTGTAACCACATCCATTAGGTTTATTTCAAGCTTTTCATGTAGAACTAAATTGATGAGATATCCAAAAGTTATTGTAATAATCGGTGAATGTGACACTGAGTCTTTGAAAGAATCCTTGCGTAACAAGGCATGCCTTGTATCTTACAATTTTATATTTCTCATTTCTTTTTCGCTTGAGGACCCATTTATAGCCAACTGATTTTACACTATTAGGCGTTTGGAAACATGTTCCCAAAATCTCACATTTAGCAAGTGAGTTCAACTCTAATTGAATTGCCTCTTGCCATTTTGGCCAATCACAACTATGTCAGCATTCTTCGACAAATAGAGGTTCAAGATCCTCAATGTCTTGCATATTATTTAGTGCAACATTGTATGCAAAAACATTATCCACCATAATTTTCAATCAATTTAATTCTATCCAATCACCAGTAAAATATATTGATAATTCTTTATTCACTTCAGTCTCAAGTTCATTGATTTCTTTAGAAATATCAAGATTAATCAAATCTTGAATCTCTTTATGAGATTTTTTATGGTGTCATATGATCATTTTTCGTACTTCTTTTTCTAGGATTTTTATCCTTTGAACCCAATGGTGTACCACATTTCAAATGTGTTGAAGATTCAGAAGCTCTCACACTAGTAGATAGATGAAACTTTCGGAACATCAATTTCGATAGGCAATTCTCTGCTCGAATATGTGACTTAGTTATCCTTTTCAAATCAGTAAACACGTCCGGCATTTGATTTGCTATTTTCTGTATTGGATGATCTTTTGGACCTTACGTTCACATATAGGGGAACTGCTATATCATGGTGATCACGGAGCAGGCTATTGTTGCCACTTCTCTAAATCTTGCTGAAATAATAGCTATTCATAAAACAAGCAGCGAATGTGTATGGTTGAGATTAGTAATACATTTCATCAAAGAAAAATGTAGTCTGGAGTATGATATTAAGGTGTCCACAATCTTACTAGAAGACAATGTTGTAGACATAACCCAAGTAAAATGAGGGTTCATTGAAGGAGATAGAACAAAATATATTTCACCAAAATTATTCTTCAGACATGATCTCCAGAAGAACAGTGATGTTGATGTGCAACATTTCCGTTCAAGCAATAATCCAATGGATACATTCACCAATCCTTACCAACTTCAACTTTTGAAAAGATGGTATACAAGATTGGGATGCGAAGACTTAACCAACTGTATTGTGTTCTTTATTCGGGGTAGTACAATACACAGTGTACTCTTTTTTTCTTAACCAAGGTTTTAGCCCTTTGGGTTTTCTTAGTAAGATATTTAGTGAGGTAGCAAACTATGCGTATTAAGTATAACTATATATATTTGTCCTTTCACTAGAACTTCTCTTTTACATGAACATCCAAGGGAGAGTGTTGTAAAAGATATGGATGCTCATGGGACCTACTAATGTTTACTTCTTGCTTTCACTTTGGCTATAAATAGCCTTTTCAAACGAACAAAAGATATACAAGAACAACTTTTTCTCTTACTCTCCCCCCCTTTTGTTAAGAATAGTTCTCTCCCTCTCTCCTTCTTGTTATTTTAGTTTATCACTTCTGTATTTATTTTAATACCAACAAATGATAGTGATAAACTAAATTAACAAAAAGTTGAGTGAGGTAGAGAACAATCTGTTCTTGTTTTTCTTTTGTTTGTTTGAAAAGACTATTTATAGCCAAAGTGAAAGAAACAAACTTGTTTCTTGGCCACCAATGAGGAGATTGATCGGGTAAGTGAAAATAGGCCATAAATGGGTGGGTCTCATACATGACATCCACCCTTATTTTACAACACTCCCCCTTGAATGTCTAGGTAAAAGAAAGGTTCTAGTGAAAGTTTACCATTATATGTGCAATTTCTTTTAGTAAGCTTCAGGTTTACCATGACATGAATTTCATATTAATAAACGTCTAGTTTACTGTGGCATGTGATTTCATCATGCTTATATTTGTAGTACATTAGCTCTTCTGGTGTCCTTGATAATTAATTTTGTACTATCAAATATTACTTGGATACTGCTGGTACCATAAAAGAAGCTTAACTAGAAGGGCAGTGCAAACCTGAAAGGATAGTGGAGAGTTGGATCATGGTTTTTGACTCCTAAGGGAAGTGAGTTTTCCATATACTTTCTGCAAACAATCTTCTCGCATAGTTGTTCAAAGAACCTGGTTCTTTGAGTGCTTAATATGCAGCCAAACTAACACTACGGATACTACATGATATTTCATGTATTCCTATAGTTAGCTAGAGAAAGCGATGATGGATCTCGATGCATGGTAGAAGAGCTACTTGACCATGTTTCAATATCTCAAAATGAAACTAAAGAACTTGATTTCCATTTTCTTGTGGTGGGTCTGCCATAAGAATAAACGTGAACCCAGCGCTGCATTTACCCCTGGCAGAGACTAGTAACTATTTGTCCTACAATCTGCACATCATTAGTTTCACAAGAAAATATTAAATAAGAGTGGTGAAGAGGAACTTGAGATGTTTCGAAGACAAATACAGTTCCATCCAGATGATAAAGGCTAACAACTTTTTGGTTTAATAGAACTACTGGAATCCCTACATGTTTAAGTATGTGATGCACTTTTGTATCGTTATACTTTCCACATTGTGCAGACTGCAGAGTTCCCAGCACACTCTTACTGCTGTTTTGAATACAATCCTAACCATTTCAGAAAGAGTAAAAAGCAATGCATAGTGGTAGATGGTTCAAACGTGTCAGTAGACATCGCAAATTTCACTATCAGTTTTGTGAATCGCTTGAGACTTATTGTTGTGCCCAGTTTGGTTTACATGATTTGATTCTTCAGATCCCATATTTCTTTGGTGAATATAATTGAGAGTGTCATTCATATAACTACTAATTCATATATCTATGAGGATGTAAACTATGCAAAATTAGTTTCTCATGCCATTTCATCCCACAAGGAGCAAAATTTCTTATTGGAAGAGCCATCATGCAGGTGAACCTCTAATACGAGTAAAATAATGTGTATCCTAGTGGTGCAGGGTATAAACAATTGTAATGTACCCTTTAATTGTCTTTTTTTCTATCTTTTTGGTGTTATATGAACATATGCTAATGACTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGCTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGTTCTGTTGAATCCTTTACATTAGCGTTGTATGGTCAATAAATTTTATGATCATGGAATAATTTACAACTGATTAAATTACTTTGTTATTTGTTTCAAAGCATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTCGTGAGTATATGCTGTGCTGCCACATGATAATTAAAGTTCATTGGAGGCTACAGAAAACATTTCAACCTTTTGTTTATTCAAAACTAAATTTAGCATGAGTCTTCAATGAAATGGATACCCCATTTAGTTTAACGCCTTTATTTGCCTGACAGGATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCT</genome_strand>
        <mrna_strand>CTGATTTTTTTATTCTCAAGATGCTCTGAGCCACACGCGCTTCTCCCTCTCCCACCACAATTTCTTCTCCTAAAACACGCAGTGCAGCCATTGCAGCGCTACACCATTTTCCTCTGCATAGTGTCCTCTCTCACAGTCTCGTCAGATAATGA..............................................................................................................................GTTTCGGAAAGAAGATCAGGATAGGGCTCGATG.....................................................................................................................GGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCCAGCACTGTGCTTAAGACTTCCACCTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTC........................................................................................................................................................GATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCATCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG...................................................................GCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCG....................................................................................................................................................................................................................................ATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727894" ref_strand="+" ref_description="SGN-E727894 [LA16AC08]">
      <seq>aatttcttctcctaaacacgcagtgcagccattgcagcgctacaccattttcctctgcatagtgtcctctctcacagtctcgtcagataatgagtttcggaaagaagatcaggatagggctcgatgggtttggaagaattaatcgtttcatcgcgagagcagctcacagagacgaaaacaagctttcaaatgccagcactgtgcttaagacttccacctttaagcatgactcagatggttttggatctgctgggttaaagtctttcagagcatttgcagtggttggtgctggaatctctgggctacttagctttgcaggagttgcttattctgatgaggccgaacatggcttagagtgtccgagctatccttggcctcacgaaggcattctcagctcttatgaccatgcttcgatacgtcgaggtcatcaggtttaccagcaagtgtgtgcgtcctgccactcaatgtcgctaatttcctaccgtgatcttgttggtgttgcatacactgaagaagaaactaaggccatggcagcagaaattgaggtggttgatggccctaatgatgagggtgagatgttcatccgccctgggaagttgagtgatcgttttccacagccttacccaaatgaagcagctgcgaggtttgcaaatggtggggcttatcctcctgatctaagtcttatcactaaggcccggcataacggtcaaaactatgtttttgctcttctaactggctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64674" stop="70983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64974" g_stop="65067" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65068" i_stop="65193" i_length="126">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65194" g_stop="65226" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="126" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65227" i_stop="65343" i_length="117">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65344" g_stop="65441" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="224" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65442" i_stop="69947" i_length="4506">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69948" g_stop="70135" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="412" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70136" i_stop="70287" i_length="152">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70288" g_stop="70567" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="692" r_length="280" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70635" g_stop="70683" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="741" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E727894" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64974" e_stop="65067"/>
          <exon e_start="65194" e_stop="65226"/>
          <exon e_start="65344" e_stop="65441"/>
          <exon e_start="69948" e_stop="70135"/>
          <exon e_start="70288" e_stop="70567"/>
          <exon e_start="70635" e_stop="70683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTTCTCCTAAAACACGCAGTGCAGCCATTGCAGCGCTACACCATTTTCCTCTGCATAGTGTCCTCTCTCACAGTCTCGTCAGATAATGAGTACGTCCTTTTTATCATATCTGGATTTCGATTTTATTCATAGAGATCTCAACTAGTTTGGGATTAAATTTTTGTTTGATTGATTTAGTAGAAAATTAGCTAATTCTTATGATTTTAATAAAACAGGTTTCGGAAAGAAGATCAGGATAGGGCTCGATGGTATAAACTCATCACCATTCATGGATTTCCTTACATTTTTATTAGTTTTATCAAATTTTGCTCATCATTTACACCTGAAACTGTAAAGTTTGTTGCTTTATTTGTTTATAAATTCAGGGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCAAGCACTGTGCTTAAGACTTCCACCTTTAAGGTATTTTTATATATGCCCCACAGTTAAATGCTACAACTTAGAGGAAACAAAGGATCATATAGGGGAATCAATTAGGTGGGATTACGATTTTGTTGTTGTCACACTTACATTAGAAATGCTTTATCCAAGCCGAGGGTTATCAAGGACAACCTCTCTATCCGTATGAAGTAGGCGTAAGGTCTCCGTATACTCTATCCTCCCCATTTACAAGCTTGTATACTAGTATAGGAATGTCAATTGTCAAGCTATTTGTCACTGTTGGGAATAGGGTGCAATGTATATAGAGGGTTCATATAGACAATTTAAGTAGTTTGTGGTTGAGATGTAGTTGATTGATGAGTCTAGAGCCTAAAGGGCAAACAAATTGTTAAAGAAACCAAAGGGGCAAAGGTGCAGCCCCCCGACCTTGGCTTCTGTCCCTTAACAGATGTGAAATAAACATCAAAAGGAAGGCACATGGCCCCACACGCCTTATAAGGCATTGAGGCCCTTGGGCTTTACACCTTATTGGTGGGCCCCTTTCCCTTCTTTACCTAAGGCTTCCTCTTTCCCAAACCCTCCTCCCACCCATAATTTGTTCCAATGTCTCCGTGTAGGGTAAGAACTATATCATGTTAATAGATTAACATAAACGCCATGTCAAGTCTTGTAGCATTAGCAAGAGACGTAAGTCCACCAATTGCACTAAGACGTGGTACAAAAGGATCAAGAGGTTCCTTATTCTCTTCTTGAGGTTGAAACGGATCTTTACTTCAAGTGATCGAACAACAGACAACAATTGGAGTACTTAAAGGATGTGTCTTGTCCATGTAAAATCGTTTCAAAATTTTCTTAGTATAGACAAATTGATGGATAAAGACCCCGTGTGCTAAATGTTCAATATGCTGACCAATACTAAGTTTTTTATTTCCAAAATATATGAAATTCTTTCTTTAGATACTCAATTGCTTTTTGGACCTCTTTTGTAGTTCCAATGAGATTTATGTCATCAATATAAATAAAAAGTACTCCTAACAAATTCTAATGTTCTTTTCTTGATAAAAATATAAGGACAAATGACACCATTTATATAACCTTCTTTTATCAATTATGGACTGAGGCGATTATAACTGTATAATGAATTTTGTAATCTGATTGAGTATTTCTTGAGACTTTGAACTATATGCTTTAGGAATTTTTAATCCTTTTAGGATTTTAATATAAATTTCATTATGAAGCTGTAACCACATCCATTAGGTTTATTTCAAGCTTTTCATGTAGAACTAAATTGATGAGATATCCAAAAGTTATTGTAATAATCGGTGAATGTGACACTGAGTCTTTGAAAGAATCCTTGCGTAACAAGGCATGCCTTGTATCTTACAATTTTATATTTCTCATTTCTTTTTCGCTTGAGGACCCATTTATAGCCAACTGATTTTACACTATTAGGCGTTTGGAAACATGTTCCCAAAATCTCACATTTAGCAAGTGAGTTCAACTCTAATTGAATTGCCTCTTGCCATTTTGGCCAATCACAACTATGTCAGCATTCTTCGACAAATAGAGGTTCAAGATCCTCAATGTCTTGCATATTATTTAGTGCAACATTGTATGCAAAAACATTATCCACCATAATTTTCAATCAATTTAATTCTATCCAATCACCAGTAAAATATATTGATAATTCTTTATTCACTTCAGTCTCAAGTTCATTGATTTCTTTAGAAATATCAAGATTAATCAAATCTTGAATCTCTTTATGAGATTTTTTATGGTGTCATATGATCATTTTTCGTACTTCTTTTTCTAGGATTTTTATCCTTTGAACCCAATGGTGTACCACATTTCAAATGTGTTGAAGATTCAGAAGCTCTCACACTAGTAGATAGATGAAACTTTCGGAACATCAATTTCGATAGGCAATTCTCTGCTCGAATATGTGACTTAGTTATCCTTTTCAAATCAGTAAACACGTCCGGCATTTGATTTGCTATTTTCTGTATTGGATGATCTTTTGGACCTTACGTTCACATATAGGGGAACTGCTATATCATGGTGATCACGGAGCAGGCTATTGTTGCCACTTCTCTAAATCTTGCTGAAATAATAGCTATTCATAAAACAAGCAGCGAATGTGTATGGTTGAGATTAGTAATACATTTCATCAAAGAAAAATGTAGTCTGGAGTATGATATTAAGGTGTCCACAATCTTACTAGAAGACAATGTTGTAGACATAACCCAAGTAAAATGAGGGTTCATTGAAGGAGATAGAACAAAATATATTTCACCAAAATTATTCTTCAGACATGATCTCCAGAAGAACAGTGATGTTGATGTGCAACATTTCCGTTCAAGCAATAATCCAATGGATACATTCACCAATCCTTACCAACTTCAACTTTTGAAAAGATGGTATACAAGATTGGGATGCGAAGACTTAACCAACTGTATTGTGTTCTTTATTCGGGGTAGTACAATACACAGTGTACTCTTTTTTTCTTAACCAAGGTTTTAGCCCTTTGGGTTTTCTTAGTAAGATATTTAGTGAGGTAGCAAACTATGCGTATTAAGTATAACTATATATATTTGTCCTTTCACTAGAACTTCTCTTTTACATGAACATCCAAGGGAGAGTGTTGTAAAAGATATGGATGCTCATGGGACCTACTAATGTTTACTTCTTGCTTTCACTTTGGCTATAAATAGCCTTTTCAAACGAACAAAAGATATACAAGAACAACTTTTTCTCTTACTCTCCCCCCCTTTTGTTAAGAATAGTTCTCTCCCTCTCTCCTTCTTGTTATTTTAGTTTATCACTTCTGTATTTATTTTAATACCAACAAATGATAGTGATAAACTAAATTAACAAAAAGTTGAGTGAGGTAGAGAACAATCTGTTCTTGTTTTTCTTTTGTTTGTTTGAAAAGACTATTTATAGCCAAAGTGAAAGAAACAAACTTGTTTCTTGGCCACCAATGAGGAGATTGATCGGGTAAGTGAAAATAGGCCATAAATGGGTGGGTCTCATACATGACATCCACCCTTATTTTACAACACTCCCCCTTGAATGTCTAGGTAAAAGAAAGGTTCTAGTGAAAGTTTACCATTATATGTGCAATTTCTTTTAGTAAGCTTCAGGTTTACCATGACATGAATTTCATATTAATAAACGTCTAGTTTACTGTGGCATGTGATTTCATCATGCTTATATTTGTAGTACATTAGCTCTTCTGGTGTCCTTGATAATTAATTTTGTACTATCAAATATTACTTGGATACTGCTGGTACCATAAAAGAAGCTTAACTAGAAGGGCAGTGCAAACCTGAAAGGATAGTGGAGAGTTGGATCATGGTTTTTGACTCCTAAGGGAAGTGAGTTTTCCATATACTTTCTGCAAACAATCTTCTCGCATAGTTGTTCAAAGAACCTGGTTCTTTGAGTGCTTAATATGCAGCCAAACTAACACTACGGATACTACATGATATTTCATGTATTCCTATAGTTAGCTAGAGAAAGCGATGATGGATCTCGATGCATGGTAGAAGAGCTACTTGACCATGTTTCAATATCTCAAAATGAAACTAAAGAACTTGATTTCCATTTTCTTGTGGTGGGTCTGCCATAAGAATAAACGTGAACCCAGCGCTGCATTTACCCCTGGCAGAGACTAGTAACTATTTGTCCTACAATCTGCACATCATTAGTTTCACAAGAAAATATTAAATAAGAGTGGTGAAGAGGAACTTGAGATGTTTCGAAGACAAATACAGTTCCATCCAGATGATAAAGGCTAACAACTTTTTGGTTTAATAGAACTACTGGAATCCCTACATGTTTAAGTATGTGATGCACTTTTGTATCGTTATACTTTCCACATTGTGCAGACTGCAGAGTTCCCAGCACACTCTTACTGCTGTTTTGAATACAATCCTAACCATTTCAGAAAGAGTAAAAAGCAATGCATAGTGGTAGATGGTTCAAACGTGTCAGTAGACATCGCAAATTTCACTATCAGTTTTGTGAATCGCTTGAGACTTATTGTTGTGCCCAGTTTGGTTTACATGATTTGATTCTTCAGATCCCATATTTCTTTGGTGAATATAATTGAGAGTGTCATTCATATAACTACTAATTCATATATCTATGAGGATGTAAACTATGCAAAATTAGTTTCTCATGCCATTTCATCCCACAAGGAGCAAAATTTCTTATTGGAAGAGCCATCATGCAGGTGAACCTCTAATACGAGTAAAATAATGTGTATCCTAGTGGTGCAGGGTATAAACAATTGTAATGTACCCTTTAATTGTCTTTTTTTCTATCTTTTTGGTGTTATATGAACATATGCTAATGACTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGCTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGTTCTGTTGAATCCTTTACATTAGCGTTGTATGGTCAATAAATTTTATGATCATGGAATAATTTACAACTGATTAAATTACTTTGTTATTTGTTTCAAAGCATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTCGTGAGTATATGCTGTGCTGCCACATGATAATTAAAGTTCATTGGAGGCTACAGAAAACATTTCAACCTTTTGTTTATTCAAAACTAAATTTAGCATGAGTCTTCAATGAAATGGATACCCCATTTAGTTTAACGCCTTTATTTGCCTGACAGGATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACC</genome_strand>
        <mrna_strand>AATTTCTTCTCCT-AAACACGCAGTGCAGCCATTGCAGCGCTACACCATTTTCCTCTGCATAGTGTCCTCTCTCACAGTCTCGTCAGATAATGA..............................................................................................................................GTTTCGGAAAGAAGATCAGGATAGGGCTCGATG.....................................................................................................................GGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCCAGCACTGTGCTTAAGACTTCCACCTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTC........................................................................................................................................................GATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCATCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCGAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG...................................................................GCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727378" ref_strand="+" ref_description="SGN-E727378 [LA14CB04]">
      <seq>cgattcattgcagcgctacaccattttcctctgcatagtgtcctctctcacagtctcgtcagataatgagtttcggaaagaagatcaggatagggctcgatgggtttggaagaattaatcgtttcatcgcgagagcagctcacagagacgaaaacaagctttcaaatgccagcactgtgcttaagacttccacctttaagcatgactcagatggttttggatctgctgggttaaagtctttcagagcatttgcagtggttggtgctggaatctctgggctacttagctttgcaggagttgcttattctgatgaggccgaacatggcttagagtgtccgagctatccttggcctcacgaaggcattctcagctcttatgaccatgcttcgatacgtcgaggtcatcaggtttaccagcaagtgtgtgcgtcctgccactcaatgtcgctaatttcctaccgtgatcttgttggtgttgcatacactgaagaagaaactaaggccatggcagcagaaattgaggtggttgatggccctaatgatgagggtgagatgttcatccgccctgggaagttgagtgatcgttttccacagccttacccaaatgaagcagctgcaaggtttgcaaatggtggggcttatcctcctgatctaagtcttatcactaaggcccggcataacggtcaaaactatgtttttgctcttctaactggctaccgggaccctcctgctggtgtctcgattcgggaaggtcttcactataacccttacttccctggtggagctatagcaatgcctaaaatgcttaatgatggtgctgttgagtatgaagatggtatacctgcaactgaggcacaaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64699" stop="71353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64999" g_stop="65067" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65068" i_stop="65193" i_length="126">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65194" g_stop="65226" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="102" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65227" i_stop="65343" i_length="117">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65344" g_stop="65441" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="200" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65442" i_stop="69947" i_length="4506">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69948" g_stop="70135" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="388" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70136" i_stop="70287" i_length="152">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70288" g_stop="70567" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="668" r_length="280" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="740" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70935" g_stop="71051" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="857" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71132" g_stop="71136" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="858" r_stop="862" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E727378" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64999" e_stop="65067"/>
          <exon e_start="65194" e_stop="65226"/>
          <exon e_start="65344" e_stop="65441"/>
          <exon e_start="69948" e_stop="70135"/>
          <exon e_start="70288" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71051"/>
          <exon e_start="71132" e_stop="71136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCATTGCAGCGCTACACCATTTTCCTCTGCATAGTGTCCTCTCTCACAGTCTCGTCAGATAATGAGTACGTCCTTTTTATCATATCTGGATTTCGATTTTATTCATAGAGATCTCAACTAGTTTGGGATTAAATTTTTGTTTGATTGATTTAGTAGAAAATTAGCTAATTCTTATGATTTTAATAAAACAGGTTTCGGAAAGAAGATCAGGATAGGGCTCGATGGTATAAACTCATCACCATTCATGGATTTCCTTACATTTTTATTAGTTTTATCAAATTTTGCTCATCATTTACACCTGAAACTGTAAAGTTTGTTGCTTTATTTGTTTATAAATTCAGGGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCAAGCACTGTGCTTAAGACTTCCACCTTTAAGGTATTTTTATATATGCCCCACAGTTAAATGCTACAACTTAGAGGAAACAAAGGATCATATAGGGGAATCAATTAGGTGGGATTACGATTTTGTTGTTGTCACACTTACATTAGAAATGCTTTATCCAAGCCGAGGGTTATCAAGGACAACCTCTCTATCCGTATGAAGTAGGCGTAAGGTCTCCGTATACTCTATCCTCCCCATTTACAAGCTTGTATACTAGTATAGGAATGTCAATTGTCAAGCTATTTGTCACTGTTGGGAATAGGGTGCAATGTATATAGAGGGTTCATATAGACAATTTAAGTAGTTTGTGGTTGAGATGTAGTTGATTGATGAGTCTAGAGCCTAAAGGGCAAACAAATTGTTAAAGAAACCAAAGGGGCAAAGGTGCAGCCCCCCGACCTTGGCTTCTGTCCCTTAACAGATGTGAAATAAACATCAAAAGGAAGGCACATGGCCCCACACGCCTTATAAGGCATTGAGGCCCTTGGGCTTTACACCTTATTGGTGGGCCCCTTTCCCTTCTTTACCTAAGGCTTCCTCTTTCCCAAACCCTCCTCCCACCCATAATTTGTTCCAATGTCTCCGTGTAGGGTAAGAACTATATCATGTTAATAGATTAACATAAACGCCATGTCAAGTCTTGTAGCATTAGCAAGAGACGTAAGTCCACCAATTGCACTAAGACGTGGTACAAAAGGATCAAGAGGTTCCTTATTCTCTTCTTGAGGTTGAAACGGATCTTTACTTCAAGTGATCGAACAACAGACAACAATTGGAGTACTTAAAGGATGTGTCTTGTCCATGTAAAATCGTTTCAAAATTTTCTTAGTATAGACAAATTGATGGATAAAGACCCCGTGTGCTAAATGTTCAATATGCTGACCAATACTAAGTTTTTTATTTCCAAAATATATGAAATTCTTTCTTTAGATACTCAATTGCTTTTTGGACCTCTTTTGTAGTTCCAATGAGATTTATGTCATCAATATAAATAAAAAGTACTCCTAACAAATTCTAATGTTCTTTTCTTGATAAAAATATAAGGACAAATGACACCATTTATATAACCTTCTTTTATCAATTATGGACTGAGGCGATTATAACTGTATAATGAATTTTGTAATCTGATTGAGTATTTCTTGAGACTTTGAACTATATGCTTTAGGAATTTTTAATCCTTTTAGGATTTTAATATAAATTTCATTATGAAGCTGTAACCACATCCATTAGGTTTATTTCAAGCTTTTCATGTAGAACTAAATTGATGAGATATCCAAAAGTTATTGTAATAATCGGTGAATGTGACACTGAGTCTTTGAAAGAATCCTTGCGTAACAAGGCATGCCTTGTATCTTACAATTTTATATTTCTCATTTCTTTTTCGCTTGAGGACCCATTTATAGCCAACTGATTTTACACTATTAGGCGTTTGGAAACATGTTCCCAAAATCTCACATTTAGCAAGTGAGTTCAACTCTAATTGAATTGCCTCTTGCCATTTTGGCCAATCACAACTATGTCAGCATTCTTCGACAAATAGAGGTTCAAGATCCTCAATGTCTTGCATATTATTTAGTGCAACATTGTATGCAAAAACATTATCCACCATAATTTTCAATCAATTTAATTCTATCCAATCACCAGTAAAATATATTGATAATTCTTTATTCACTTCAGTCTCAAGTTCATTGATTTCTTTAGAAATATCAAGATTAATCAAATCTTGAATCTCTTTATGAGATTTTTTATGGTGTCATATGATCATTTTTCGTACTTCTTTTTCTAGGATTTTTATCCTTTGAACCCAATGGTGTACCACATTTCAAATGTGTTGAAGATTCAGAAGCTCTCACACTAGTAGATAGATGAAACTTTCGGAACATCAATTTCGATAGGCAATTCTCTGCTCGAATATGTGACTTAGTTATCCTTTTCAAATCAGTAAACACGTCCGGCATTTGATTTGCTATTTTCTGTATTGGATGATCTTTTGGACCTTACGTTCACATATAGGGGAACTGCTATATCATGGTGATCACGGAGCAGGCTATTGTTGCCACTTCTCTAAATCTTGCTGAAATAATAGCTATTCATAAAACAAGCAGCGAATGTGTATGGTTGAGATTAGTAATACATTTCATCAAAGAAAAATGTAGTCTGGAGTATGATATTAAGGTGTCCACAATCTTACTAGAAGACAATGTTGTAGACATAACCCAAGTAAAATGAGGGTTCATTGAAGGAGATAGAACAAAATATATTTCACCAAAATTATTCTTCAGACATGATCTCCAGAAGAACAGTGATGTTGATGTGCAACATTTCCGTTCAAGCAATAATCCAATGGATACATTCACCAATCCTTACCAACTTCAACTTTTGAAAAGATGGTATACAAGATTGGGATGCGAAGACTTAACCAACTGTATTGTGTTCTTTATTCGGGGTAGTACAATACACAGTGTACTCTTTTTTTCTTAACCAAGGTTTTAGCCCTTTGGGTTTTCTTAGTAAGATATTTAGTGAGGTAGCAAACTATGCGTATTAAGTATAACTATATATATTTGTCCTTTCACTAGAACTTCTCTTTTACATGAACATCCAAGGGAGAGTGTTGTAAAAGATATGGATGCTCATGGGACCTACTAATGTTTACTTCTTGCTTTCACTTTGGCTATAAATAGCCTTTTCAAACGAACAAAAGATATACAAGAACAACTTTTTCTCTTACTCTCCCCCCCTTTTGTTAAGAATAGTTCTCTCCCTCTCTCCTTCTTGTTATTTTAGTTTATCACTTCTGTATTTATTTTAATACCAACAAATGATAGTGATAAACTAAATTAACAAAAAGTTGAGTGAGGTAGAGAACAATCTGTTCTTGTTTTTCTTTTGTTTGTTTGAAAAGACTATTTATAGCCAAAGTGAAAGAAACAAACTTGTTTCTTGGCCACCAATGAGGAGATTGATCGGGTAAGTGAAAATAGGCCATAAATGGGTGGGTCTCATACATGACATCCACCCTTATTTTACAACACTCCCCCTTGAATGTCTAGGTAAAAGAAAGGTTCTAGTGAAAGTTTACCATTATATGTGCAATTTCTTTTAGTAAGCTTCAGGTTTACCATGACATGAATTTCATATTAATAAACGTCTAGTTTACTGTGGCATGTGATTTCATCATGCTTATATTTGTAGTACATTAGCTCTTCTGGTGTCCTTGATAATTAATTTTGTACTATCAAATATTACTTGGATACTGCTGGTACCATAAAAGAAGCTTAACTAGAAGGGCAGTGCAAACCTGAAAGGATAGTGGAGAGTTGGATCATGGTTTTTGACTCCTAAGGGAAGTGAGTTTTCCATATACTTTCTGCAAACAATCTTCTCGCATAGTTGTTCAAAGAACCTGGTTCTTTGAGTGCTTAATATGCAGCCAAACTAACACTACGGATACTACATGATATTTCATGTATTCCTATAGTTAGCTAGAGAAAGCGATGATGGATCTCGATGCATGGTAGAAGAGCTACTTGACCATGTTTCAATATCTCAAAATGAAACTAAAGAACTTGATTTCCATTTTCTTGTGGTGGGTCTGCCATAAGAATAAACGTGAACCCAGCGCTGCATTTACCCCTGGCAGAGACTAGTAACTATTTGTCCTACAATCTGCACATCATTAGTTTCACAAGAAAATATTAAATAAGAGTGGTGAAGAGGAACTTGAGATGTTTCGAAGACAAATACAGTTCCATCCAGATGATAAAGGCTAACAACTTTTTGGTTTAATAGAACTACTGGAATCCCTACATGTTTAAGTATGTGATGCACTTTTGTATCGTTATACTTTCCACATTGTGCAGACTGCAGAGTTCCCAGCACACTCTTACTGCTGTTTTGAATACAATCCTAACCATTTCAGAAAGAGTAAAAAGCAATGCATAGTGGTAGATGGTTCAAACGTGTCAGTAGACATCGCAAATTTCACTATCAGTTTTGTGAATCGCTTGAGACTTATTGTTGTGCCCAGTTTGGTTTACATGATTTGATTCTTCAGATCCCATATTTCTTTGGTGAATATAATTGAGAGTGTCATTCATATAACTACTAATTCATATATCTATGAGGATGTAAACTATGCAAAATTAGTTTCTCATGCCATTTCATCCCACAAGGAGCAAAATTTCTTATTGGAAGAGCCATCATGCAGGTGAACCTCTAATACGAGTAAAATAATGTGTATCCTAGTGGTGCAGGGTATAAACAATTGTAATGTACCCTTTAATTGTCTTTTTTTCTATCTTTTTGGTGTTATATGAACATATGCTAATGACTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGCTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGTTCTGTTGAATCCTTTACATTAGCGTTGTATGGTCAATAAATTTTATGATCATGGAATAATTTACAACTGATTAAATTACTTTGTTATTTGTTTCAAAGCATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTCGTGAGTATATGCTGTGCTGCCACATGATAATTAAAGTTCATTGGAGGCTACAGAAAACATTTCAACCTTTTGTTTATTCAAAACTAAATTTAGCATGAGTCTTCAATGAAATGGATACCCCATTTAGTTTAACGCCTTTATTTGCCTGACAGGATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGG</genome_strand>
        <mrna_strand>CGATTCATTGCAGCGCTACACCATTTTCCTCTGCATAGTGTCCTCTCTCACAGTCTCGTCAGATAATGA..............................................................................................................................GTTTCGGAAAGAAGATCAGGATAGGGCTCGATG.....................................................................................................................GGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCCAGCACTGTGCTTAAGACTTCCACCTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTC........................................................................................................................................................GATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCATCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG...................................................................GCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCG....................................................................................................................................................................................................................................ATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAA................................................................................ATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740108" ref_strand="+" ref_description="SGN-E740108 [LC20AE09]">
      <seq>agtgtcctctctcacagtctcgtcagataatgagtttcggaaagaagatcaggatagggctcgatgggtttggaagaattaatcgtttcatcgcgagagcagctcacagagacgaaaacaagctttcaaatgccagcactgtgcttaagacttccacctttaagcatgactcagatggttttggatctgctgggttaaagtctttcagagcatttgcagtggttggtgctggaatctctgggctacttagctttgcaggagttgcttattctgatgaggccgaacatggcttagagtgtccgagctatccttggcctcacgaaggcattctcagctcttatgaccatgcttcgatacgtcgaggtcatcaggtttaccagcaagtgtgtgcgtcctgccactcaatgtcgctaatttcctaccgtgatcttgttggtgttgcatacactgaagaagaaactaaggccatggcagcagaaattgaggtggttgatggccctaatgatgagggtgagatgttcatccgccctgggaagttgagtgatcgttttccacagccttacccaaatgaagcagctgcaaggtttgcaaatggtggggcttatcctcctgatctaagtcttatcactaaggcccggcataacggtcaaaactatgtttttgctcttctaactggctaccgggaccctcctgctggtgtctcgattcgggaaggtcttcactataacccttacttccctggtggagctatagcaatgcctaaaatgcttaatgatggtgctgttgagtatgaagatggtatacctgcaactgaggcacaaatggggaaagatgttgtgtcgttcttgtcatgggctgctgagccagaaatggaagagagaagctgatgggtttcaatggatatttngtctatcacttgcacttctcaagcagcttactaccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64735" stop="71716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65035" g_stop="65067" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65068" i_stop="65193" i_length="126">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65194" g_stop="65226" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="66" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65227" i_stop="65343" i_length="117">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65344" g_stop="65441" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="164" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65442" i_stop="69947" i_length="4506">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69948" g_stop="70135" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="352" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70136" i_stop="70287" i_length="152">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70288" g_stop="70567" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="632" r_length="280" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="704" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70935" g_stop="71051" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="821" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71132" g_stop="71197" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="822" r_stop="886" r_length="65" r_score="0.970"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="71357" g_stop="71416" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="887" r_stop="944" r_length="58" r_score="0.883"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E740108" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>947</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65035" e_stop="65067"/>
          <exon e_start="65194" e_stop="65226"/>
          <exon e_start="65344" e_stop="65441"/>
          <exon e_start="69948" e_stop="70135"/>
          <exon e_start="70288" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71051"/>
          <exon e_start="71132" e_stop="71197"/>
          <exon e_start="71357" e_stop="71416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTCCTCTCTCACAGTCTCGTCAGATAATGAGTACGTCCTTTTTATCATATCTGGATTTCGATTTTATTCATAGAGATCTCAACTAGTTTGGGATTAAATTTTTGTTTGATTGATTTAGTAGAAAATTAGCTAATTCTTATGATTTTAATAAAACAGGTTTCGGAAAGAAGATCAGGATAGGGCTCGATGGTATAAACTCATCACCATTCATGGATTTCCTTACATTTTTATTAGTTTTATCAAATTTTGCTCATCATTTACACCTGAAACTGTAAAGTTTGTTGCTTTATTTGTTTATAAATTCAGGGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCAAGCACTGTGCTTAAGACTTCCACCTTTAAGGTATTTTTATATATGCCCCACAGTTAAATGCTACAACTTAGAGGAAACAAAGGATCATATAGGGGAATCAATTAGGTGGGATTACGATTTTGTTGTTGTCACACTTACATTAGAAATGCTTTATCCAAGCCGAGGGTTATCAAGGACAACCTCTCTATCCGTATGAAGTAGGCGTAAGGTCTCCGTATACTCTATCCTCCCCATTTACAAGCTTGTATACTAGTATAGGAATGTCAATTGTCAAGCTATTTGTCACTGTTGGGAATAGGGTGCAATGTATATAGAGGGTTCATATAGACAATTTAAGTAGTTTGTGGTTGAGATGTAGTTGATTGATGAGTCTAGAGCCTAAAGGGCAAACAAATTGTTAAAGAAACCAAAGGGGCAAAGGTGCAGCCCCCCGACCTTGGCTTCTGTCCCTTAACAGATGTGAAATAAACATCAAAAGGAAGGCACATGGCCCCACACGCCTTATAAGGCATTGAGGCCCTTGGGCTTTACACCTTATTGGTGGGCCCCTTTCCCTTCTTTACCTAAGGCTTCCTCTTTCCCAAACCCTCCTCCCACCCATAATTTGTTCCAATGTCTCCGTGTAGGGTAAGAACTATATCATGTTAATAGATTAACATAAACGCCATGTCAAGTCTTGTAGCATTAGCAAGAGACGTAAGTCCACCAATTGCACTAAGACGTGGTACAAAAGGATCAAGAGGTTCCTTATTCTCTTCTTGAGGTTGAAACGGATCTTTACTTCAAGTGATCGAACAACAGACAACAATTGGAGTACTTAAAGGATGTGTCTTGTCCATGTAAAATCGTTTCAAAATTTTCTTAGTATAGACAAATTGATGGATAAAGACCCCGTGTGCTAAATGTTCAATATGCTGACCAATACTAAGTTTTTTATTTCCAAAATATATGAAATTCTTTCTTTAGATACTCAATTGCTTTTTGGACCTCTTTTGTAGTTCCAATGAGATTTATGTCATCAATATAAATAAAAAGTACTCCTAACAAATTCTAATGTTCTTTTCTTGATAAAAATATAAGGACAAATGACACCATTTATATAACCTTCTTTTATCAATTATGGACTGAGGCGATTATAACTGTATAATGAATTTTGTAATCTGATTGAGTATTTCTTGAGACTTTGAACTATATGCTTTAGGAATTTTTAATCCTTTTAGGATTTTAATATAAATTTCATTATGAAGCTGTAACCACATCCATTAGGTTTATTTCAAGCTTTTCATGTAGAACTAAATTGATGAGATATCCAAAAGTTATTGTAATAATCGGTGAATGTGACACTGAGTCTTTGAAAGAATCCTTGCGTAACAAGGCATGCCTTGTATCTTACAATTTTATATTTCTCATTTCTTTTTCGCTTGAGGACCCATTTATAGCCAACTGATTTTACACTATTAGGCGTTTGGAAACATGTTCCCAAAATCTCACATTTAGCAAGTGAGTTCAACTCTAATTGAATTGCCTCTTGCCATTTTGGCCAATCACAACTATGTCAGCATTCTTCGACAAATAGAGGTTCAAGATCCTCAATGTCTTGCATATTATTTAGTGCAACATTGTATGCAAAAACATTATCCACCATAATTTTCAATCAATTTAATTCTATCCAATCACCAGTAAAATATATTGATAATTCTTTATTCACTTCAGTCTCAAGTTCATTGATTTCTTTAGAAATATCAAGATTAATCAAATCTTGAATCTCTTTATGAGATTTTTTATGGTGTCATATGATCATTTTTCGTACTTCTTTTTCTAGGATTTTTATCCTTTGAACCCAATGGTGTACCACATTTCAAATGTGTTGAAGATTCAGAAGCTCTCACACTAGTAGATAGATGAAACTTTCGGAACATCAATTTCGATAGGCAATTCTCTGCTCGAATATGTGACTTAGTTATCCTTTTCAAATCAGTAAACACGTCCGGCATTTGATTTGCTATTTTCTGTATTGGATGATCTTTTGGACCTTACGTTCACATATAGGGGAACTGCTATATCATGGTGATCACGGAGCAGGCTATTGTTGCCACTTCTCTAAATCTTGCTGAAATAATAGCTATTCATAAAACAAGCAGCGAATGTGTATGGTTGAGATTAGTAATACATTTCATCAAAGAAAAATGTAGTCTGGAGTATGATATTAAGGTGTCCACAATCTTACTAGAAGACAATGTTGTAGACATAACCCAAGTAAAATGAGGGTTCATTGAAGGAGATAGAACAAAATATATTTCACCAAAATTATTCTTCAGACATGATCTCCAGAAGAACAGTGATGTTGATGTGCAACATTTCCGTTCAAGCAATAATCCAATGGATACATTCACCAATCCTTACCAACTTCAACTTTTGAAAAGATGGTATACAAGATTGGGATGCGAAGACTTAACCAACTGTATTGTGTTCTTTATTCGGGGTAGTACAATACACAGTGTACTCTTTTTTTCTTAACCAAGGTTTTAGCCCTTTGGGTTTTCTTAGTAAGATATTTAGTGAGGTAGCAAACTATGCGTATTAAGTATAACTATATATATTTGTCCTTTCACTAGAACTTCTCTTTTACATGAACATCCAAGGGAGAGTGTTGTAAAAGATATGGATGCTCATGGGACCTACTAATGTTTACTTCTTGCTTTCACTTTGGCTATAAATAGCCTTTTCAAACGAACAAAAGATATACAAGAACAACTTTTTCTCTTACTCTCCCCCCCTTTTGTTAAGAATAGTTCTCTCCCTCTCTCCTTCTTGTTATTTTAGTTTATCACTTCTGTATTTATTTTAATACCAACAAATGATAGTGATAAACTAAATTAACAAAAAGTTGAGTGAGGTAGAGAACAATCTGTTCTTGTTTTTCTTTTGTTTGTTTGAAAAGACTATTTATAGCCAAAGTGAAAGAAACAAACTTGTTTCTTGGCCACCAATGAGGAGATTGATCGGGTAAGTGAAAATAGGCCATAAATGGGTGGGTCTCATACATGACATCCACCCTTATTTTACAACACTCCCCCTTGAATGTCTAGGTAAAAGAAAGGTTCTAGTGAAAGTTTACCATTATATGTGCAATTTCTTTTAGTAAGCTTCAGGTTTACCATGACATGAATTTCATATTAATAAACGTCTAGTTTACTGTGGCATGTGATTTCATCATGCTTATATTTGTAGTACATTAGCTCTTCTGGTGTCCTTGATAATTAATTTTGTACTATCAAATATTACTTGGATACTGCTGGTACCATAAAAGAAGCTTAACTAGAAGGGCAGTGCAAACCTGAAAGGATAGTGGAGAGTTGGATCATGGTTTTTGACTCCTAAGGGAAGTGAGTTTTCCATATACTTTCTGCAAACAATCTTCTCGCATAGTTGTTCAAAGAACCTGGTTCTTTGAGTGCTTAATATGCAGCCAAACTAACACTACGGATACTACATGATATTTCATGTATTCCTATAGTTAGCTAGAGAAAGCGATGATGGATCTCGATGCATGGTAGAAGAGCTACTTGACCATGTTTCAATATCTCAAAATGAAACTAAAGAACTTGATTTCCATTTTCTTGTGGTGGGTCTGCCATAAGAATAAACGTGAACCCAGCGCTGCATTTACCCCTGGCAGAGACTAGTAACTATTTGTCCTACAATCTGCACATCATTAGTTTCACAAGAAAATATTAAATAAGAGTGGTGAAGAGGAACTTGAGATGTTTCGAAGACAAATACAGTTCCATCCAGATGATAAAGGCTAACAACTTTTTGGTTTAATAGAACTACTGGAATCCCTACATGTTTAAGTATGTGATGCACTTTTGTATCGTTATACTTTCCACATTGTGCAGACTGCAGAGTTCCCAGCACACTCTTACTGCTGTTTTGAATACAATCCTAACCATTTCAGAAAGAGTAAAAAGCAATGCATAGTGGTAGATGGTTCAAACGTGTCAGTAGACATCGCAAATTTCACTATCAGTTTTGTGAATCGCTTGAGACTTATTGTTGTGCCCAGTTTGGTTTACATGATTTGATTCTTCAGATCCCATATTTCTTTGGTGAATATAATTGAGAGTGTCATTCATATAACTACTAATTCATATATCTATGAGGATGTAAACTATGCAAAATTAGTTTCTCATGCCATTTCATCCCACAAGGAGCAAAATTTCTTATTGGAAGAGCCATCATGCAGGTGAACCTCTAATACGAGTAAAATAATGTGTATCCTAGTGGTGCAGGGTATAAACAATTGTAATGTACCCTTTAATTGTCTTTTTTTCTATCTTTTTGGTGTTATATGAACATATGCTAATGACTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGCTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGTTCTGTTGAATCCTTTACATTAGCGTTGTATGGTCAATAAATTTTATGATCATGGAATAATTTACAACTGATTAAATTACTTTGTTATTTGTTTCAAAGCATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTCGTGAGTATATGCTGTGCTGCCACATGATAATTAAAGTTCATTGGAGGCTACAGAAAACATTTCAACCTTTTGTTTATTCAAAACTAAATTTAGCATGAGTCTTCAATGAAATGGATACCCCATTTAGTTTAACGCCTTTATTTGCCTGACAGGATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTGGTAAGTCGCAATCTTCCATTTGGTCCTTCTCTTGCAGTATGATAGTCACTATATTCAACCTCTGCATTTTGAATGTTGAACTGATATTGGATCCTCATTGACAGTTGAATGTGCCATTAAATGAATTTACTGACCTCTTGGGTATTGTAATTTCTACAGATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGT</genome_strand>
        <mrna_strand>AGTGTCCTCTCTCACAGTCTCGTCAGATAATGA..............................................................................................................................GTTTCGGAAAGAAGATCAGGATAGGGCTCGATG.....................................................................................................................GGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCCAGCACTGTGCTTAAGACTTCCACCTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTC........................................................................................................................................................GATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCATCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG...................................................................GCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCG....................................................................................................................................................................................................................................ATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAA................................................................................ATGGGGAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAG-AAGCTG...............................................................................................................................................................ATGGGTTTC-AATGGATATTTNGTCTATCACTTGCACTTCT-CAAGCAGCTTACTACCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728639" ref_strand="+" ref_description="SGN-E728639 [LA18BH07]">
      <seq>gccctcactcacagtctcgtcagataatgagtttcggaaagaacctcaggatagggctcgatgggtttggaagaattaatcgtttcatcgcgagagcagctcacagagacgaaaacaagctttcaaatgccagcactgtgcttaagacttccacctttaagcatgactcagatggttttggatctgctgggttaaagtctttcagagcatttgcagtggttggtgctggaatctctgggctacttagctttgcaggagttgcttattctgatgaggccgaacatggcttagagtgtccgagctatccttggcctcacgaaggcattctcagctcttatgaccatgcttcgatacgtgaggtcatcaggtttaccagcaagtgtgtgcgtcctgccactcaatgtcgctaatttcctaccgtgatcttgttggtgttgcatacactgaagaagaaactaaggccatggcagcagaaattgaggtggttgatggccctaatgatgagggtgagatgttcatccgccctgggaagttgagtgatcgttttccacagccttacccaaatgaagcagctgcaaggtttgcaaatggtggggcttatcctcctgatctaagtcttatcactaaggcccggcataacggtcaaaactatgtttttgctcttctaactggctaccgggaccctcctgctggtgtctcgattcgggaaggtcttcactataacccttacttccctggtggagctatagcaatgcctaaaatgcttaatgatggtgctgttgagtatgaagatggtatacctgcaactgaggcacaaatggggaaagatgttgtgtcgttcttgtcatgggctgctgagccagaaatggaagagagaaagctgatgggtttcaaatggatatttgtcttatcacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64738" stop="71690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65038" g_stop="65067" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65068" i_stop="65193" i_length="126">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65194" g_stop="65226" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="63" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65227" i_stop="65343" i_length="117">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65344" g_stop="65441" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="161" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65442" i_stop="69947" i_length="4506">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69948" g_stop="70135" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="349" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70136" i_stop="70287" i_length="152">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70288" g_stop="70567" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="628" r_length="279" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="700" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70935" g_stop="71051" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="817" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71132" g_stop="71197" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="818" r_stop="883" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="71357" g_stop="71390" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="884" r_stop="917" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E728639" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>918</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65038" e_stop="65067"/>
          <exon e_start="65194" e_stop="65226"/>
          <exon e_start="65344" e_stop="65441"/>
          <exon e_start="69948" e_stop="70135"/>
          <exon e_start="70288" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71051"/>
          <exon e_start="71132" e_stop="71197"/>
          <exon e_start="71357" e_stop="71390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTCTCTCACAGTCTCGTCAGATAATGAGTACGTCCTTTTTATCATATCTGGATTTCGATTTTATTCATAGAGATCTCAACTAGTTTGGGATTAAATTTTTGTTTGATTGATTTAGTAGAAAATTAGCTAATTCTTATGATTTTAATAAAACAGGTTTCGGAAAGAAGATCAGGATAGGGCTCGATGGTATAAACTCATCACCATTCATGGATTTCCTTACATTTTTATTAGTTTTATCAAATTTTGCTCATCATTTACACCTGAAACTGTAAAGTTTGTTGCTTTATTTGTTTATAAATTCAGGGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCAAGCACTGTGCTTAAGACTTCCACCTTTAAGGTATTTTTATATATGCCCCACAGTTAAATGCTACAACTTAGAGGAAACAAAGGATCATATAGGGGAATCAATTAGGTGGGATTACGATTTTGTTGTTGTCACACTTACATTAGAAATGCTTTATCCAAGCCGAGGGTTATCAAGGACAACCTCTCTATCCGTATGAAGTAGGCGTAAGGTCTCCGTATACTCTATCCTCCCCATTTACAAGCTTGTATACTAGTATAGGAATGTCAATTGTCAAGCTATTTGTCACTGTTGGGAATAGGGTGCAATGTATATAGAGGGTTCATATAGACAATTTAAGTAGTTTGTGGTTGAGATGTAGTTGATTGATGAGTCTAGAGCCTAAAGGGCAAACAAATTGTTAAAGAAACCAAAGGGGCAAAGGTGCAGCCCCCCGACCTTGGCTTCTGTCCCTTAACAGATGTGAAATAAACATCAAAAGGAAGGCACATGGCCCCACACGCCTTATAAGGCATTGAGGCCCTTGGGCTTTACACCTTATTGGTGGGCCCCTTTCCCTTCTTTACCTAAGGCTTCCTCTTTCCCAAACCCTCCTCCCACCCATAATTTGTTCCAATGTCTCCGTGTAGGGTAAGAACTATATCATGTTAATAGATTAACATAAACGCCATGTCAAGTCTTGTAGCATTAGCAAGAGACGTAAGTCCACCAATTGCACTAAGACGTGGTACAAAAGGATCAAGAGGTTCCTTATTCTCTTCTTGAGGTTGAAACGGATCTTTACTTCAAGTGATCGAACAACAGACAACAATTGGAGTACTTAAAGGATGTGTCTTGTCCATGTAAAATCGTTTCAAAATTTTCTTAGTATAGACAAATTGATGGATAAAGACCCCGTGTGCTAAATGTTCAATATGCTGACCAATACTAAGTTTTTTATTTCCAAAATATATGAAATTCTTTCTTTAGATACTCAATTGCTTTTTGGACCTCTTTTGTAGTTCCAATGAGATTTATGTCATCAATATAAATAAAAAGTACTCCTAACAAATTCTAATGTTCTTTTCTTGATAAAAATATAAGGACAAATGACACCATTTATATAACCTTCTTTTATCAATTATGGACTGAGGCGATTATAACTGTATAATGAATTTTGTAATCTGATTGAGTATTTCTTGAGACTTTGAACTATATGCTTTAGGAATTTTTAATCCTTTTAGGATTTTAATATAAATTTCATTATGAAGCTGTAACCACATCCATTAGGTTTATTTCAAGCTTTTCATGTAGAACTAAATTGATGAGATATCCAAAAGTTATTGTAATAATCGGTGAATGTGACACTGAGTCTTTGAAAGAATCCTTGCGTAACAAGGCATGCCTTGTATCTTACAATTTTATATTTCTCATTTCTTTTTCGCTTGAGGACCCATTTATAGCCAACTGATTTTACACTATTAGGCGTTTGGAAACATGTTCCCAAAATCTCACATTTAGCAAGTGAGTTCAACTCTAATTGAATTGCCTCTTGCCATTTTGGCCAATCACAACTATGTCAGCATTCTTCGACAAATAGAGGTTCAAGATCCTCAATGTCTTGCATATTATTTAGTGCAACATTGTATGCAAAAACATTATCCACCATAATTTTCAATCAATTTAATTCTATCCAATCACCAGTAAAATATATTGATAATTCTTTATTCACTTCAGTCTCAAGTTCATTGATTTCTTTAGAAATATCAAGATTAATCAAATCTTGAATCTCTTTATGAGATTTTTTATGGTGTCATATGATCATTTTTCGTACTTCTTTTTCTAGGATTTTTATCCTTTGAACCCAATGGTGTACCACATTTCAAATGTGTTGAAGATTCAGAAGCTCTCACACTAGTAGATAGATGAAACTTTCGGAACATCAATTTCGATAGGCAATTCTCTGCTCGAATATGTGACTTAGTTATCCTTTTCAAATCAGTAAACACGTCCGGCATTTGATTTGCTATTTTCTGTATTGGATGATCTTTTGGACCTTACGTTCACATATAGGGGAACTGCTATATCATGGTGATCACGGAGCAGGCTATTGTTGCCACTTCTCTAAATCTTGCTGAAATAATAGCTATTCATAAAACAAGCAGCGAATGTGTATGGTTGAGATTAGTAATACATTTCATCAAAGAAAAATGTAGTCTGGAGTATGATATTAAGGTGTCCACAATCTTACTAGAAGACAATGTTGTAGACATAACCCAAGTAAAATGAGGGTTCATTGAAGGAGATAGAACAAAATATATTTCACCAAAATTATTCTTCAGACATGATCTCCAGAAGAACAGTGATGTTGATGTGCAACATTTCCGTTCAAGCAATAATCCAATGGATACATTCACCAATCCTTACCAACTTCAACTTTTGAAAAGATGGTATACAAGATTGGGATGCGAAGACTTAACCAACTGTATTGTGTTCTTTATTCGGGGTAGTACAATACACAGTGTACTCTTTTTTTCTTAACCAAGGTTTTAGCCCTTTGGGTTTTCTTAGTAAGATATTTAGTGAGGTAGCAAACTATGCGTATTAAGTATAACTATATATATTTGTCCTTTCACTAGAACTTCTCTTTTACATGAACATCCAAGGGAGAGTGTTGTAAAAGATATGGATGCTCATGGGACCTACTAATGTTTACTTCTTGCTTTCACTTTGGCTATAAATAGCCTTTTCAAACGAACAAAAGATATACAAGAACAACTTTTTCTCTTACTCTCCCCCCCTTTTGTTAAGAATAGTTCTCTCCCTCTCTCCTTCTTGTTATTTTAGTTTATCACTTCTGTATTTATTTTAATACCAACAAATGATAGTGATAAACTAAATTAACAAAAAGTTGAGTGAGGTAGAGAACAATCTGTTCTTGTTTTTCTTTTGTTTGTTTGAAAAGACTATTTATAGCCAAAGTGAAAGAAACAAACTTGTTTCTTGGCCACCAATGAGGAGATTGATCGGGTAAGTGAAAATAGGCCATAAATGGGTGGGTCTCATACATGACATCCACCCTTATTTTACAACACTCCCCCTTGAATGTCTAGGTAAAAGAAAGGTTCTAGTGAAAGTTTACCATTATATGTGCAATTTCTTTTAGTAAGCTTCAGGTTTACCATGACATGAATTTCATATTAATAAACGTCTAGTTTACTGTGGCATGTGATTTCATCATGCTTATATTTGTAGTACATTAGCTCTTCTGGTGTCCTTGATAATTAATTTTGTACTATCAAATATTACTTGGATACTGCTGGTACCATAAAAGAAGCTTAACTAGAAGGGCAGTGCAAACCTGAAAGGATAGTGGAGAGTTGGATCATGGTTTTTGACTCCTAAGGGAAGTGAGTTTTCCATATACTTTCTGCAAACAATCTTCTCGCATAGTTGTTCAAAGAACCTGGTTCTTTGAGTGCTTAATATGCAGCCAAACTAACACTACGGATACTACATGATATTTCATGTATTCCTATAGTTAGCTAGAGAAAGCGATGATGGATCTCGATGCATGGTAGAAGAGCTACTTGACCATGTTTCAATATCTCAAAATGAAACTAAAGAACTTGATTTCCATTTTCTTGTGGTGGGTCTGCCATAAGAATAAACGTGAACCCAGCGCTGCATTTACCCCTGGCAGAGACTAGTAACTATTTGTCCTACAATCTGCACATCATTAGTTTCACAAGAAAATATTAAATAAGAGTGGTGAAGAGGAACTTGAGATGTTTCGAAGACAAATACAGTTCCATCCAGATGATAAAGGCTAACAACTTTTTGGTTTAATAGAACTACTGGAATCCCTACATGTTTAAGTATGTGATGCACTTTTGTATCGTTATACTTTCCACATTGTGCAGACTGCAGAGTTCCCAGCACACTCTTACTGCTGTTTTGAATACAATCCTAACCATTTCAGAAAGAGTAAAAAGCAATGCATAGTGGTAGATGGTTCAAACGTGTCAGTAGACATCGCAAATTTCACTATCAGTTTTGTGAATCGCTTGAGACTTATTGTTGTGCCCAGTTTGGTTTACATGATTTGATTCTTCAGATCCCATATTTCTTTGGTGAATATAATTGAGAGTGTCATTCATATAACTACTAATTCATATATCTATGAGGATGTAAACTATGCAAAATTAGTTTCTCATGCCATTTCATCCCACAAGGAGCAAAATTTCTTATTGGAAGAGCCATCATGCAGGTGAACCTCTAATACGAGTAAAATAATGTGTATCCTAGTGGTGCAGGGTATAAACAATTGTAATGTACCCTTTAATTGTCTTTTTTTCTATCTTTTTGGTGTTATATGAACATATGCTAATGACTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGCTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGTTCTGTTGAATCCTTTACATTAGCGTTGTATGGTCAATAAATTTTATGATCATGGAATAATTTACAACTGATTAAATTACTTTGTTATTTGTTTCAAAGCATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTCGTGAGTATATGCTGTGCTGCCACATGATAATTAAAGTTCATTGGAGGCTACAGAAAACATTTCAACCTTTTGTTTATTCAAAACTAAATTTAGCATGAGTCTTCAATGAAATGGATACCCCATTTAGTTTAACGCCTTTATTTGCCTGACAGGATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTGGTAAGTCGCAATCTTCCATTTGGTCCTTCTCTTGCAGTATGATAGTCACTATATTCAACCTCTGCATTTTGAATGTTGAACTGATATTGGATCCTCATTGACAGTTGAATGTGCCATTAAATGAATTTACTGACCTCTTGGGTATTGTAATTTCTACAGATGGGTTTCAAATGGATATTCGTCTTATCACTTG</genome_strand>
        <mrna_strand>GCCCTCACTCACAGTCTCGTCAGATAATGA..............................................................................................................................GTTTCGGAAAGAACCTCAGGATAGGGCTCGATG.....................................................................................................................GGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCCAGCACTGTGCTTAAGACTTCCACCTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTC........................................................................................................................................................GATACGT-GAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCATCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG...................................................................GCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCG....................................................................................................................................................................................................................................ATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAA................................................................................ATGGGGAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTG...............................................................................................................................................................ATGGGTTTCAAATGGATATTTGTCTTATCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727169" ref_strand="+" ref_description="SGN-E727169 [LA13DG03]">
      <seq>cgctcacagtctcgtcagataatgagtttcggaaagaagatcaggatagggctcgatgggtttggaagaattaatcgtttcatcgcgagagcagctcacagagacgaaaacaagctttcaaatgccagcactgtgcttaagacttccacctttaagcatgactcagatggttttggatctgctgggttaaagtctttcagagcatttgcagtggttggtgctggaatctctgggctacttagctttgcaggagttgcttattctgatgaggccgaacatggcttagagtgtccgagctatccttggcctcacgaaggcattctcagctcttatgaccatgcttcgatacgtcgaggtcatcaggtttaccagcaagtgtgtgcgtcctgccactcaatgtcgctaatttcctaccgtgatcttgttggtgttgcatacactgaagaagaaactaaggccatggcagcagaaattgaggtggttgatggccctaatgatgagggtgagatgttcatccgccctgggaagttgagtgatcgttttccacagccttacccaaatgaagcagctgcaaggtttgcaaatggtggggcttatcctcctgatctaagtcttatcactaaggcccggcataacggtcaaaactatgtttttgctcttctaactggctaccgggaccctcctgctggtgtctcgattcgggaaggtcttcactataacccttacttccctggtggagctatagcaatgcctnaaatgcttaatgatggtgctgttgagtatgaagatggtatacctgcaactgangcacaaatgggaaaagatngtgtgtcgttcttgtcatgggctgctgagccaaaaagggaagagagaaagctgatgggtttcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64743" stop="71508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65043" g_stop="65067" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65068" i_stop="65193" i_length="126">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65194" g_stop="65226" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="58" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65227" i_stop="65343" i_length="117">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65344" g_stop="65441" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="156" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65442" i_stop="69947" i_length="4506">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69948" g_stop="70135" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="344" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70136" i_stop="70287" i_length="152">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70288" g_stop="70567" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="624" r_length="280" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="696" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70935" g_stop="71051" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="813" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71132" g_stop="71197" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="814" r_stop="879" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="71357" g_stop="71369" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="880" r_stop="892" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E727169" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65043" e_stop="65067"/>
          <exon e_start="65194" e_stop="65226"/>
          <exon e_start="65344" e_stop="65441"/>
          <exon e_start="69948" e_stop="70135"/>
          <exon e_start="70288" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71051"/>
          <exon e_start="71132" e_stop="71197"/>
          <exon e_start="71357" e_stop="71369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCACAGTCTCGTCAGATAATGAGTACGTCCTTTTTATCATATCTGGATTTCGATTTTATTCATAGAGATCTCAACTAGTTTGGGATTAAATTTTTGTTTGATTGATTTAGTAGAAAATTAGCTAATTCTTATGATTTTAATAAAACAGGTTTCGGAAAGAAGATCAGGATAGGGCTCGATGGTATAAACTCATCACCATTCATGGATTTCCTTACATTTTTATTAGTTTTATCAAATTTTGCTCATCATTTACACCTGAAACTGTAAAGTTTGTTGCTTTATTTGTTTATAAATTCAGGGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCAAGCACTGTGCTTAAGACTTCCACCTTTAAGGTATTTTTATATATGCCCCACAGTTAAATGCTACAACTTAGAGGAAACAAAGGATCATATAGGGGAATCAATTAGGTGGGATTACGATTTTGTTGTTGTCACACTTACATTAGAAATGCTTTATCCAAGCCGAGGGTTATCAAGGACAACCTCTCTATCCGTATGAAGTAGGCGTAAGGTCTCCGTATACTCTATCCTCCCCATTTACAAGCTTGTATACTAGTATAGGAATGTCAATTGTCAAGCTATTTGTCACTGTTGGGAATAGGGTGCAATGTATATAGAGGGTTCATATAGACAATTTAAGTAGTTTGTGGTTGAGATGTAGTTGATTGATGAGTCTAGAGCCTAAAGGGCAAACAAATTGTTAAAGAAACCAAAGGGGCAAAGGTGCAGCCCCCCGACCTTGGCTTCTGTCCCTTAACAGATGTGAAATAAACATCAAAAGGAAGGCACATGGCCCCACACGCCTTATAAGGCATTGAGGCCCTTGGGCTTTACACCTTATTGGTGGGCCCCTTTCCCTTCTTTACCTAAGGCTTCCTCTTTCCCAAACCCTCCTCCCACCCATAATTTGTTCCAATGTCTCCGTGTAGGGTAAGAACTATATCATGTTAATAGATTAACATAAACGCCATGTCAAGTCTTGTAGCATTAGCAAGAGACGTAAGTCCACCAATTGCACTAAGACGTGGTACAAAAGGATCAAGAGGTTCCTTATTCTCTTCTTGAGGTTGAAACGGATCTTTACTTCAAGTGATCGAACAACAGACAACAATTGGAGTACTTAAAGGATGTGTCTTGTCCATGTAAAATCGTTTCAAAATTTTCTTAGTATAGACAAATTGATGGATAAAGACCCCGTGTGCTAAATGTTCAATATGCTGACCAATACTAAGTTTTTTATTTCCAAAATATATGAAATTCTTTCTTTAGATACTCAATTGCTTTTTGGACCTCTTTTGTAGTTCCAATGAGATTTATGTCATCAATATAAATAAAAAGTACTCCTAACAAATTCTAATGTTCTTTTCTTGATAAAAATATAAGGACAAATGACACCATTTATATAACCTTCTTTTATCAATTATGGACTGAGGCGATTATAACTGTATAATGAATTTTGTAATCTGATTGAGTATTTCTTGAGACTTTGAACTATATGCTTTAGGAATTTTTAATCCTTTTAGGATTTTAATATAAATTTCATTATGAAGCTGTAACCACATCCATTAGGTTTATTTCAAGCTTTTCATGTAGAACTAAATTGATGAGATATCCAAAAGTTATTGTAATAATCGGTGAATGTGACACTGAGTCTTTGAAAGAATCCTTGCGTAACAAGGCATGCCTTGTATCTTACAATTTTATATTTCTCATTTCTTTTTCGCTTGAGGACCCATTTATAGCCAACTGATTTTACACTATTAGGCGTTTGGAAACATGTTCCCAAAATCTCACATTTAGCAAGTGAGTTCAACTCTAATTGAATTGCCTCTTGCCATTTTGGCCAATCACAACTATGTCAGCATTCTTCGACAAATAGAGGTTCAAGATCCTCAATGTCTTGCATATTATTTAGTGCAACATTGTATGCAAAAACATTATCCACCATAATTTTCAATCAATTTAATTCTATCCAATCACCAGTAAAATATATTGATAATTCTTTATTCACTTCAGTCTCAAGTTCATTGATTTCTTTAGAAATATCAAGATTAATCAAATCTTGAATCTCTTTATGAGATTTTTTATGGTGTCATATGATCATTTTTCGTACTTCTTTTTCTAGGATTTTTATCCTTTGAACCCAATGGTGTACCACATTTCAAATGTGTTGAAGATTCAGAAGCTCTCACACTAGTAGATAGATGAAACTTTCGGAACATCAATTTCGATAGGCAATTCTCTGCTCGAATATGTGACTTAGTTATCCTTTTCAAATCAGTAAACACGTCCGGCATTTGATTTGCTATTTTCTGTATTGGATGATCTTTTGGACCTTACGTTCACATATAGGGGAACTGCTATATCATGGTGATCACGGAGCAGGCTATTGTTGCCACTTCTCTAAATCTTGCTGAAATAATAGCTATTCATAAAACAAGCAGCGAATGTGTATGGTTGAGATTAGTAATACATTTCATCAAAGAAAAATGTAGTCTGGAGTATGATATTAAGGTGTCCACAATCTTACTAGAAGACAATGTTGTAGACATAACCCAAGTAAAATGAGGGTTCATTGAAGGAGATAGAACAAAATATATTTCACCAAAATTATTCTTCAGACATGATCTCCAGAAGAACAGTGATGTTGATGTGCAACATTTCCGTTCAAGCAATAATCCAATGGATACATTCACCAATCCTTACCAACTTCAACTTTTGAAAAGATGGTATACAAGATTGGGATGCGAAGACTTAACCAACTGTATTGTGTTCTTTATTCGGGGTAGTACAATACACAGTGTACTCTTTTTTTCTTAACCAAGGTTTTAGCCCTTTGGGTTTTCTTAGTAAGATATTTAGTGAGGTAGCAAACTATGCGTATTAAGTATAACTATATATATTTGTCCTTTCACTAGAACTTCTCTTTTACATGAACATCCAAGGGAGAGTGTTGTAAAAGATATGGATGCTCATGGGACCTACTAATGTTTACTTCTTGCTTTCACTTTGGCTATAAATAGCCTTTTCAAACGAACAAAAGATATACAAGAACAACTTTTTCTCTTACTCTCCCCCCCTTTTGTTAAGAATAGTTCTCTCCCTCTCTCCTTCTTGTTATTTTAGTTTATCACTTCTGTATTTATTTTAATACCAACAAATGATAGTGATAAACTAAATTAACAAAAAGTTGAGTGAGGTAGAGAACAATCTGTTCTTGTTTTTCTTTTGTTTGTTTGAAAAGACTATTTATAGCCAAAGTGAAAGAAACAAACTTGTTTCTTGGCCACCAATGAGGAGATTGATCGGGTAAGTGAAAATAGGCCATAAATGGGTGGGTCTCATACATGACATCCACCCTTATTTTACAACACTCCCCCTTGAATGTCTAGGTAAAAGAAAGGTTCTAGTGAAAGTTTACCATTATATGTGCAATTTCTTTTAGTAAGCTTCAGGTTTACCATGACATGAATTTCATATTAATAAACGTCTAGTTTACTGTGGCATGTGATTTCATCATGCTTATATTTGTAGTACATTAGCTCTTCTGGTGTCCTTGATAATTAATTTTGTACTATCAAATATTACTTGGATACTGCTGGTACCATAAAAGAAGCTTAACTAGAAGGGCAGTGCAAACCTGAAAGGATAGTGGAGAGTTGGATCATGGTTTTTGACTCCTAAGGGAAGTGAGTTTTCCATATACTTTCTGCAAACAATCTTCTCGCATAGTTGTTCAAAGAACCTGGTTCTTTGAGTGCTTAATATGCAGCCAAACTAACACTACGGATACTACATGATATTTCATGTATTCCTATAGTTAGCTAGAGAAAGCGATGATGGATCTCGATGCATGGTAGAAGAGCTACTTGACCATGTTTCAATATCTCAAAATGAAACTAAAGAACTTGATTTCCATTTTCTTGTGGTGGGTCTGCCATAAGAATAAACGTGAACCCAGCGCTGCATTTACCCCTGGCAGAGACTAGTAACTATTTGTCCTACAATCTGCACATCATTAGTTTCACAAGAAAATATTAAATAAGAGTGGTGAAGAGGAACTTGAGATGTTTCGAAGACAAATACAGTTCCATCCAGATGATAAAGGCTAACAACTTTTTGGTTTAATAGAACTACTGGAATCCCTACATGTTTAAGTATGTGATGCACTTTTGTATCGTTATACTTTCCACATTGTGCAGACTGCAGAGTTCCCAGCACACTCTTACTGCTGTTTTGAATACAATCCTAACCATTTCAGAAAGAGTAAAAAGCAATGCATAGTGGTAGATGGTTCAAACGTGTCAGTAGACATCGCAAATTTCACTATCAGTTTTGTGAATCGCTTGAGACTTATTGTTGTGCCCAGTTTGGTTTACATGATTTGATTCTTCAGATCCCATATTTCTTTGGTGAATATAATTGAGAGTGTCATTCATATAACTACTAATTCATATATCTATGAGGATGTAAACTATGCAAAATTAGTTTCTCATGCCATTTCATCCCACAAGGAGCAAAATTTCTTATTGGAAGAGCCATCATGCAGGTGAACCTCTAATACGAGTAAAATAATGTGTATCCTAGTGGTGCAGGGTATAAACAATTGTAATGTACCCTTTAATTGTCTTTTTTTCTATCTTTTTGGTGTTATATGAACATATGCTAATGACTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGCTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGTTCTGTTGAATCCTTTACATTAGCGTTGTATGGTCAATAAATTTTATGATCATGGAATAATTTACAACTGATTAAATTACTTTGTTATTTGTTTCAAAGCATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTCGTGAGTATATGCTGTGCTGCCACATGATAATTAAAGTTCATTGGAGGCTACAGAAAACATTTCAACCTTTTGTTTATTCAAAACTAAATTTAGCATGAGTCTTCAATGAAATGGATACCCCATTTAGTTTAACGCCTTTATTTGCCTGACAGGATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTGGTAAGTCGCAATCTTCCATTTGGTCCTTCTCTTGCAGTATGATAGTCACTATATTCAACCTCTGCATTTTGAATGTTGAACTGATATTGGATCCTCATTGACAGTTGAATGTGCCATTAAATGAATTTACTGACCTCTTGGGTATTGTAATTTCTACAGATGGGTTTCAAAT</genome_strand>
        <mrna_strand>CGCTCACAGTCTCGTCAGATAATGA..............................................................................................................................GTTTCGGAAAGAAGATCAGGATAGGGCTCGATG.....................................................................................................................GGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCCAGCACTGTGCTTAAGACTTCCACCTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTC........................................................................................................................................................GATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCATCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG...................................................................GCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCG....................................................................................................................................................................................................................................ATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTNAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGANGCACAA................................................................................ATGGGAAAAGATNGTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAAAAAGGGAAGAGAGAAAGCTG...............................................................................................................................................................ATGGGTTTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730449" ref_strand="+" ref_description="SGN-E730449 [LA24AF12]">
      <seq>cagtctcgtcagataatgagtttcggaaagaagatcaggatagggctcgatgggtttggaagaattaatcgtttcatcgcgagagcagctcacagagacgaaaacaagctttcaaatgccagcactgtgcttaagacttccacctttaagcatgactcagatggttttggatctgctgggttaaagtctttcagagcatttgcagtggttggtgctggaatctctgggctacttagctttgcaggagttgcttattctgatgaggccgaacatggcttagagtgtccgagctatccttggcctcacgaaggcattctcagctcttatgaccatgcttcgatacgtcgaggtcatcaggtttaccagcaagtgtgtgcgtcctgccactcaatgtcgctaatttcctaccgtgatcttgttggtgttgcatacactgaagaagaaactaaggccatggcagcagaaattgaggtggttgatggccctaatgatgagggtgagatgttcatccgccctgggaagttgagtgatcgttttccacagccttacccaaatgaagcagctgcaaggtttgcaaatggtggggcttatcctcctgatctaagtcttatcactaaggcccggcataacggtcaaaactatgtttttgctcttctaactggctaccgggaccctcctgctggtgtctcgattcgggaaggtcttcactataacccttacttccctggtggagctataacaatgcctaaaatgcttaatgatggtgctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64749" stop="71316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65049" g_stop="65067" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65068" i_stop="65193" i_length="126">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65194" g_stop="65226" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="52" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65227" i_stop="65343" i_length="117">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65344" g_stop="65441" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="150" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65442" i_stop="69947" i_length="4506">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69948" g_stop="70135" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="338" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70136" i_stop="70287" i_length="152">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70288" g_stop="70567" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="618" r_length="280" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="690" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70935" g_stop="71016" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="772" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E730449" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65049" e_stop="65067"/>
          <exon e_start="65194" e_stop="65226"/>
          <exon e_start="65344" e_stop="65441"/>
          <exon e_start="69948" e_stop="70135"/>
          <exon e_start="70288" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCTCGTCAGATAATGAGTACGTCCTTTTTATCATATCTGGATTTCGATTTTATTCATAGAGATCTCAACTAGTTTGGGATTAAATTTTTGTTTGATTGATTTAGTAGAAAATTAGCTAATTCTTATGATTTTAATAAAACAGGTTTCGGAAAGAAGATCAGGATAGGGCTCGATGGTATAAACTCATCACCATTCATGGATTTCCTTACATTTTTATTAGTTTTATCAAATTTTGCTCATCATTTACACCTGAAACTGTAAAGTTTGTTGCTTTATTTGTTTATAAATTCAGGGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCAAGCACTGTGCTTAAGACTTCCACCTTTAAGGTATTTTTATATATGCCCCACAGTTAAATGCTACAACTTAGAGGAAACAAAGGATCATATAGGGGAATCAATTAGGTGGGATTACGATTTTGTTGTTGTCACACTTACATTAGAAATGCTTTATCCAAGCCGAGGGTTATCAAGGACAACCTCTCTATCCGTATGAAGTAGGCGTAAGGTCTCCGTATACTCTATCCTCCCCATTTACAAGCTTGTATACTAGTATAGGAATGTCAATTGTCAAGCTATTTGTCACTGTTGGGAATAGGGTGCAATGTATATAGAGGGTTCATATAGACAATTTAAGTAGTTTGTGGTTGAGATGTAGTTGATTGATGAGTCTAGAGCCTAAAGGGCAAACAAATTGTTAAAGAAACCAAAGGGGCAAAGGTGCAGCCCCCCGACCTTGGCTTCTGTCCCTTAACAGATGTGAAATAAACATCAAAAGGAAGGCACATGGCCCCACACGCCTTATAAGGCATTGAGGCCCTTGGGCTTTACACCTTATTGGTGGGCCCCTTTCCCTTCTTTACCTAAGGCTTCCTCTTTCCCAAACCCTCCTCCCACCCATAATTTGTTCCAATGTCTCCGTGTAGGGTAAGAACTATATCATGTTAATAGATTAACATAAACGCCATGTCAAGTCTTGTAGCATTAGCAAGAGACGTAAGTCCACCAATTGCACTAAGACGTGGTACAAAAGGATCAAGAGGTTCCTTATTCTCTTCTTGAGGTTGAAACGGATCTTTACTTCAAGTGATCGAACAACAGACAACAATTGGAGTACTTAAAGGATGTGTCTTGTCCATGTAAAATCGTTTCAAAATTTTCTTAGTATAGACAAATTGATGGATAAAGACCCCGTGTGCTAAATGTTCAATATGCTGACCAATACTAAGTTTTTTATTTCCAAAATATATGAAATTCTTTCTTTAGATACTCAATTGCTTTTTGGACCTCTTTTGTAGTTCCAATGAGATTTATGTCATCAATATAAATAAAAAGTACTCCTAACAAATTCTAATGTTCTTTTCTTGATAAAAATATAAGGACAAATGACACCATTTATATAACCTTCTTTTATCAATTATGGACTGAGGCGATTATAACTGTATAATGAATTTTGTAATCTGATTGAGTATTTCTTGAGACTTTGAACTATATGCTTTAGGAATTTTTAATCCTTTTAGGATTTTAATATAAATTTCATTATGAAGCTGTAACCACATCCATTAGGTTTATTTCAAGCTTTTCATGTAGAACTAAATTGATGAGATATCCAAAAGTTATTGTAATAATCGGTGAATGTGACACTGAGTCTTTGAAAGAATCCTTGCGTAACAAGGCATGCCTTGTATCTTACAATTTTATATTTCTCATTTCTTTTTCGCTTGAGGACCCATTTATAGCCAACTGATTTTACACTATTAGGCGTTTGGAAACATGTTCCCAAAATCTCACATTTAGCAAGTGAGTTCAACTCTAATTGAATTGCCTCTTGCCATTTTGGCCAATCACAACTATGTCAGCATTCTTCGACAAATAGAGGTTCAAGATCCTCAATGTCTTGCATATTATTTAGTGCAACATTGTATGCAAAAACATTATCCACCATAATTTTCAATCAATTTAATTCTATCCAATCACCAGTAAAATATATTGATAATTCTTTATTCACTTCAGTCTCAAGTTCATTGATTTCTTTAGAAATATCAAGATTAATCAAATCTTGAATCTCTTTATGAGATTTTTTATGGTGTCATATGATCATTTTTCGTACTTCTTTTTCTAGGATTTTTATCCTTTGAACCCAATGGTGTACCACATTTCAAATGTGTTGAAGATTCAGAAGCTCTCACACTAGTAGATAGATGAAACTTTCGGAACATCAATTTCGATAGGCAATTCTCTGCTCGAATATGTGACTTAGTTATCCTTTTCAAATCAGTAAACACGTCCGGCATTTGATTTGCTATTTTCTGTATTGGATGATCTTTTGGACCTTACGTTCACATATAGGGGAACTGCTATATCATGGTGATCACGGAGCAGGCTATTGTTGCCACTTCTCTAAATCTTGCTGAAATAATAGCTATTCATAAAACAAGCAGCGAATGTGTATGGTTGAGATTAGTAATACATTTCATCAAAGAAAAATGTAGTCTGGAGTATGATATTAAGGTGTCCACAATCTTACTAGAAGACAATGTTGTAGACATAACCCAAGTAAAATGAGGGTTCATTGAAGGAGATAGAACAAAATATATTTCACCAAAATTATTCTTCAGACATGATCTCCAGAAGAACAGTGATGTTGATGTGCAACATTTCCGTTCAAGCAATAATCCAATGGATACATTCACCAATCCTTACCAACTTCAACTTTTGAAAAGATGGTATACAAGATTGGGATGCGAAGACTTAACCAACTGTATTGTGTTCTTTATTCGGGGTAGTACAATACACAGTGTACTCTTTTTTTCTTAACCAAGGTTTTAGCCCTTTGGGTTTTCTTAGTAAGATATTTAGTGAGGTAGCAAACTATGCGTATTAAGTATAACTATATATATTTGTCCTTTCACTAGAACTTCTCTTTTACATGAACATCCAAGGGAGAGTGTTGTAAAAGATATGGATGCTCATGGGACCTACTAATGTTTACTTCTTGCTTTCACTTTGGCTATAAATAGCCTTTTCAAACGAACAAAAGATATACAAGAACAACTTTTTCTCTTACTCTCCCCCCCTTTTGTTAAGAATAGTTCTCTCCCTCTCTCCTTCTTGTTATTTTAGTTTATCACTTCTGTATTTATTTTAATACCAACAAATGATAGTGATAAACTAAATTAACAAAAAGTTGAGTGAGGTAGAGAACAATCTGTTCTTGTTTTTCTTTTGTTTGTTTGAAAAGACTATTTATAGCCAAAGTGAAAGAAACAAACTTGTTTCTTGGCCACCAATGAGGAGATTGATCGGGTAAGTGAAAATAGGCCATAAATGGGTGGGTCTCATACATGACATCCACCCTTATTTTACAACACTCCCCCTTGAATGTCTAGGTAAAAGAAAGGTTCTAGTGAAAGTTTACCATTATATGTGCAATTTCTTTTAGTAAGCTTCAGGTTTACCATGACATGAATTTCATATTAATAAACGTCTAGTTTACTGTGGCATGTGATTTCATCATGCTTATATTTGTAGTACATTAGCTCTTCTGGTGTCCTTGATAATTAATTTTGTACTATCAAATATTACTTGGATACTGCTGGTACCATAAAAGAAGCTTAACTAGAAGGGCAGTGCAAACCTGAAAGGATAGTGGAGAGTTGGATCATGGTTTTTGACTCCTAAGGGAAGTGAGTTTTCCATATACTTTCTGCAAACAATCTTCTCGCATAGTTGTTCAAAGAACCTGGTTCTTTGAGTGCTTAATATGCAGCCAAACTAACACTACGGATACTACATGATATTTCATGTATTCCTATAGTTAGCTAGAGAAAGCGATGATGGATCTCGATGCATGGTAGAAGAGCTACTTGACCATGTTTCAATATCTCAAAATGAAACTAAAGAACTTGATTTCCATTTTCTTGTGGTGGGTCTGCCATAAGAATAAACGTGAACCCAGCGCTGCATTTACCCCTGGCAGAGACTAGTAACTATTTGTCCTACAATCTGCACATCATTAGTTTCACAAGAAAATATTAAATAAGAGTGGTGAAGAGGAACTTGAGATGTTTCGAAGACAAATACAGTTCCATCCAGATGATAAAGGCTAACAACTTTTTGGTTTAATAGAACTACTGGAATCCCTACATGTTTAAGTATGTGATGCACTTTTGTATCGTTATACTTTCCACATTGTGCAGACTGCAGAGTTCCCAGCACACTCTTACTGCTGTTTTGAATACAATCCTAACCATTTCAGAAAGAGTAAAAAGCAATGCATAGTGGTAGATGGTTCAAACGTGTCAGTAGACATCGCAAATTTCACTATCAGTTTTGTGAATCGCTTGAGACTTATTGTTGTGCCCAGTTTGGTTTACATGATTTGATTCTTCAGATCCCATATTTCTTTGGTGAATATAATTGAGAGTGTCATTCATATAACTACTAATTCATATATCTATGAGGATGTAAACTATGCAAAATTAGTTTCTCATGCCATTTCATCCCACAAGGAGCAAAATTTCTTATTGGAAGAGCCATCATGCAGGTGAACCTCTAATACGAGTAAAATAATGTGTATCCTAGTGGTGCAGGGTATAAACAATTGTAATGTACCCTTTAATTGTCTTTTTTTCTATCTTTTTGGTGTTATATGAACATATGCTAATGACTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGCTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGTTCTGTTGAATCCTTTACATTAGCGTTGTATGGTCAATAAATTTTATGATCATGGAATAATTTACAACTGATTAAATTACTTTGTTATTTGTTTCAAAGCATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTCGTGAGTATATGCTGTGCTGCCACATGATAATTAAAGTTCATTGGAGGCTACAGAAAACATTTCAACCTTTTGTTTATTCAAAACTAAATTTAGCATGAGTCTTCAATGAAATGGATACCCCATTTAGTTTAACGCCTTTATTTGCCTGACAGGATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTG</genome_strand>
        <mrna_strand>CAGTCTCGTCAGATAATGA..............................................................................................................................GTTTCGGAAAGAAGATCAGGATAGGGCTCGATG.....................................................................................................................GGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCCAGCACTGTGCTTAAGACTTCCACCTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTC........................................................................................................................................................GATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCATCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG...................................................................GCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCG....................................................................................................................................................................................................................................ATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAACAATGCCTAAAATGCTTAATGATGGTGCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728794" ref_strand="+" ref_description="SGN-E728794 [LA18DH07]">
      <seq>aatgagtttcggaaagaagatcaggatagggctcgatgggtttggaagaattaagtcgttcatcgcgagagcagctcacagagacgaaaacaagctttcaaatgccagcactgtgcttaagacttccacctttaagcatgactcagatggttttggatctgctgggttaaagtctttcagagcatttgcagtggttggtgctggaatctctgggctacttagctttgcaggagttgcttattctgatgaggccgaacatggcttagagtgtccgagctatccttggcctcacgaaggcattctcagctcttatgaccatgcttcgatacgtcgaggtcatcaggtttaccagcaagtgtgtgcgtcctgccactcaatgtcgctaatttcctaccgtgatcttgttggtgttgcatacactgaagaagaaactaaggccatggcagcagaaattgaggtggttgatggccctaatgatgagggtgagatgttcatccgccctgggaagttgagtgatcgttttccacagccttacccaaatgaagcagctgcaaggtttgcaaatggtggggcttatcctcctgatctaagtcttatcactaaggcccggcataacggtcaaaactatgtttttgctcttctaactggctaccgggaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64894" stop="70991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65063" g_stop="65067" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65068" i_stop="65193" i_length="126">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65194" g_stop="65226" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="38" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65227" i_stop="65343" i_length="117">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65344" g_stop="65441" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="136" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65442" i_stop="69947" i_length="4506">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69948" g_stop="70135" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="324" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70136" i_stop="70287" i_length="152">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70288" g_stop="70567" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="604" r_length="280" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70635" g_stop="70691" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="661" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E728794" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65063" e_stop="65067"/>
          <exon e_start="65194" e_stop="65226"/>
          <exon e_start="65344" e_stop="65441"/>
          <exon e_start="69948" e_stop="70135"/>
          <exon e_start="70288" e_stop="70567"/>
          <exon e_start="70635" e_stop="70691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGTACGTCCTTTTTATCATATCTGGATTTCGATTTTATTCATAGAGATCTCAACTAGTTTGGGATTAAATTTTTGTTTGATTGATTTAGTAGAAAATTAGCTAATTCTTATGATTTTAATAAAACAGGTTTCGGAAAGAAGATCAGGATAGGGCTCGATGGTATAAACTCATCACCATTCATGGATTTCCTTACATTTTTATTAGTTTTATCAAATTTTGCTCATCATTTACACCTGAAACTGTAAAGTTTGTTGCTTTATTTGTTTATAAATTCAGGGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCAAGCACTGTGCTTAAGACTTCCACCTTTAAGGTATTTTTATATATGCCCCACAGTTAAATGCTACAACTTAGAGGAAACAAAGGATCATATAGGGGAATCAATTAGGTGGGATTACGATTTTGTTGTTGTCACACTTACATTAGAAATGCTTTATCCAAGCCGAGGGTTATCAAGGACAACCTCTCTATCCGTATGAAGTAGGCGTAAGGTCTCCGTATACTCTATCCTCCCCATTTACAAGCTTGTATACTAGTATAGGAATGTCAATTGTCAAGCTATTTGTCACTGTTGGGAATAGGGTGCAATGTATATAGAGGGTTCATATAGACAATTTAAGTAGTTTGTGGTTGAGATGTAGTTGATTGATGAGTCTAGAGCCTAAAGGGCAAACAAATTGTTAAAGAAACCAAAGGGGCAAAGGTGCAGCCCCCCGACCTTGGCTTCTGTCCCTTAACAGATGTGAAATAAACATCAAAAGGAAGGCACATGGCCCCACACGCCTTATAAGGCATTGAGGCCCTTGGGCTTTACACCTTATTGGTGGGCCCCTTTCCCTTCTTTACCTAAGGCTTCCTCTTTCCCAAACCCTCCTCCCACCCATAATTTGTTCCAATGTCTCCGTGTAGGGTAAGAACTATATCATGTTAATAGATTAACATAAACGCCATGTCAAGTCTTGTAGCATTAGCAAGAGACGTAAGTCCACCAATTGCACTAAGACGTGGTACAAAAGGATCAAGAGGTTCCTTATTCTCTTCTTGAGGTTGAAACGGATCTTTACTTCAAGTGATCGAACAACAGACAACAATTGGAGTACTTAAAGGATGTGTCTTGTCCATGTAAAATCGTTTCAAAATTTTCTTAGTATAGACAAATTGATGGATAAAGACCCCGTGTGCTAAATGTTCAATATGCTGACCAATACTAAGTTTTTTATTTCCAAAATATATGAAATTCTTTCTTTAGATACTCAATTGCTTTTTGGACCTCTTTTGTAGTTCCAATGAGATTTATGTCATCAATATAAATAAAAAGTACTCCTAACAAATTCTAATGTTCTTTTCTTGATAAAAATATAAGGACAAATGACACCATTTATATAACCTTCTTTTATCAATTATGGACTGAGGCGATTATAACTGTATAATGAATTTTGTAATCTGATTGAGTATTTCTTGAGACTTTGAACTATATGCTTTAGGAATTTTTAATCCTTTTAGGATTTTAATATAAATTTCATTATGAAGCTGTAACCACATCCATTAGGTTTATTTCAAGCTTTTCATGTAGAACTAAATTGATGAGATATCCAAAAGTTATTGTAATAATCGGTGAATGTGACACTGAGTCTTTGAAAGAATCCTTGCGTAACAAGGCATGCCTTGTATCTTACAATTTTATATTTCTCATTTCTTTTTCGCTTGAGGACCCATTTATAGCCAACTGATTTTACACTATTAGGCGTTTGGAAACATGTTCCCAAAATCTCACATTTAGCAAGTGAGTTCAACTCTAATTGAATTGCCTCTTGCCATTTTGGCCAATCACAACTATGTCAGCATTCTTCGACAAATAGAGGTTCAAGATCCTCAATGTCTTGCATATTATTTAGTGCAACATTGTATGCAAAAACATTATCCACCATAATTTTCAATCAATTTAATTCTATCCAATCACCAGTAAAATATATTGATAATTCTTTATTCACTTCAGTCTCAAGTTCATTGATTTCTTTAGAAATATCAAGATTAATCAAATCTTGAATCTCTTTATGAGATTTTTTATGGTGTCATATGATCATTTTTCGTACTTCTTTTTCTAGGATTTTTATCCTTTGAACCCAATGGTGTACCACATTTCAAATGTGTTGAAGATTCAGAAGCTCTCACACTAGTAGATAGATGAAACTTTCGGAACATCAATTTCGATAGGCAATTCTCTGCTCGAATATGTGACTTAGTTATCCTTTTCAAATCAGTAAACACGTCCGGCATTTGATTTGCTATTTTCTGTATTGGATGATCTTTTGGACCTTACGTTCACATATAGGGGAACTGCTATATCATGGTGATCACGGAGCAGGCTATTGTTGCCACTTCTCTAAATCTTGCTGAAATAATAGCTATTCATAAAACAAGCAGCGAATGTGTATGGTTGAGATTAGTAATACATTTCATCAAAGAAAAATGTAGTCTGGAGTATGATATTAAGGTGTCCACAATCTTACTAGAAGACAATGTTGTAGACATAACCCAAGTAAAATGAGGGTTCATTGAAGGAGATAGAACAAAATATATTTCACCAAAATTATTCTTCAGACATGATCTCCAGAAGAACAGTGATGTTGATGTGCAACATTTCCGTTCAAGCAATAATCCAATGGATACATTCACCAATCCTTACCAACTTCAACTTTTGAAAAGATGGTATACAAGATTGGGATGCGAAGACTTAACCAACTGTATTGTGTTCTTTATTCGGGGTAGTACAATACACAGTGTACTCTTTTTTTCTTAACCAAGGTTTTAGCCCTTTGGGTTTTCTTAGTAAGATATTTAGTGAGGTAGCAAACTATGCGTATTAAGTATAACTATATATATTTGTCCTTTCACTAGAACTTCTCTTTTACATGAACATCCAAGGGAGAGTGTTGTAAAAGATATGGATGCTCATGGGACCTACTAATGTTTACTTCTTGCTTTCACTTTGGCTATAAATAGCCTTTTCAAACGAACAAAAGATATACAAGAACAACTTTTTCTCTTACTCTCCCCCCCTTTTGTTAAGAATAGTTCTCTCCCTCTCTCCTTCTTGTTATTTTAGTTTATCACTTCTGTATTTATTTTAATACCAACAAATGATAGTGATAAACTAAATTAACAAAAAGTTGAGTGAGGTAGAGAACAATCTGTTCTTGTTTTTCTTTTGTTTGTTTGAAAAGACTATTTATAGCCAAAGTGAAAGAAACAAACTTGTTTCTTGGCCACCAATGAGGAGATTGATCGGGTAAGTGAAAATAGGCCATAAATGGGTGGGTCTCATACATGACATCCACCCTTATTTTACAACACTCCCCCTTGAATGTCTAGGTAAAAGAAAGGTTCTAGTGAAAGTTTACCATTATATGTGCAATTTCTTTTAGTAAGCTTCAGGTTTACCATGACATGAATTTCATATTAATAAACGTCTAGTTTACTGTGGCATGTGATTTCATCATGCTTATATTTGTAGTACATTAGCTCTTCTGGTGTCCTTGATAATTAATTTTGTACTATCAAATATTACTTGGATACTGCTGGTACCATAAAAGAAGCTTAACTAGAAGGGCAGTGCAAACCTGAAAGGATAGTGGAGAGTTGGATCATGGTTTTTGACTCCTAAGGGAAGTGAGTTTTCCATATACTTTCTGCAAACAATCTTCTCGCATAGTTGTTCAAAGAACCTGGTTCTTTGAGTGCTTAATATGCAGCCAAACTAACACTACGGATACTACATGATATTTCATGTATTCCTATAGTTAGCTAGAGAAAGCGATGATGGATCTCGATGCATGGTAGAAGAGCTACTTGACCATGTTTCAATATCTCAAAATGAAACTAAAGAACTTGATTTCCATTTTCTTGTGGTGGGTCTGCCATAAGAATAAACGTGAACCCAGCGCTGCATTTACCCCTGGCAGAGACTAGTAACTATTTGTCCTACAATCTGCACATCATTAGTTTCACAAGAAAATATTAAATAAGAGTGGTGAAGAGGAACTTGAGATGTTTCGAAGACAAATACAGTTCCATCCAGATGATAAAGGCTAACAACTTTTTGGTTTAATAGAACTACTGGAATCCCTACATGTTTAAGTATGTGATGCACTTTTGTATCGTTATACTTTCCACATTGTGCAGACTGCAGAGTTCCCAGCACACTCTTACTGCTGTTTTGAATACAATCCTAACCATTTCAGAAAGAGTAAAAAGCAATGCATAGTGGTAGATGGTTCAAACGTGTCAGTAGACATCGCAAATTTCACTATCAGTTTTGTGAATCGCTTGAGACTTATTGTTGTGCCCAGTTTGGTTTACATGATTTGATTCTTCAGATCCCATATTTCTTTGGTGAATATAATTGAGAGTGTCATTCATATAACTACTAATTCATATATCTATGAGGATGTAAACTATGCAAAATTAGTTTCTCATGCCATTTCATCCCACAAGGAGCAAAATTTCTTATTGGAAGAGCCATCATGCAGGTGAACCTCTAATACGAGTAAAATAATGTGTATCCTAGTGGTGCAGGGTATAAACAATTGTAATGTACCCTTTAATTGTCTTTTTTTCTATCTTTTTGGTGTTATATGAACATATGCTAATGACTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGCTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGTTCTGTTGAATCCTTTACATTAGCGTTGTATGGTCAATAAATTTTATGATCATGGAATAATTTACAACTGATTAAATTACTTTGTTATTTGTTTCAAAGCATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTCGTGAGTATATGCTGTGCTGCCACATGATAATTAAAGTTCATTGGAGGCTACAGAAAACATTTCAACCTTTTGTTTATTCAAAACTAAATTTAGCATGAGTCTTCAATGAAATGGATACCCCATTTAGTTTAACGCCTTTATTTGCCTGACAGGATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCT</genome_strand>
        <mrna_strand>AATGA..............................................................................................................................GTTTCGGAAAGAAGATCAGGATAGGGCTCGATG.....................................................................................................................GGTTTGGAAGAATTAAGTCGTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCCAGCACTGTGCTTAAGACTTCCACCTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTC........................................................................................................................................................GATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCATCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG...................................................................GCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739579" ref_strand="+" ref_description="SGN-E739579 [LC18AA10]">
      <seq>gtttcggaaagaagatcaggatagggctcgatgggtttggaagaattaatcgtttcatcgcgagagcagctcacagagacgaaaacaagctttcaaatgccagcactgtgcttaagacttccacctttaagcatgactcagatggttttggatctgctgggttaaagtctttcagagcatttgcagtggttggtgctggaatctctgggctacttagctttgcaggagttgcttattctgatgaggccgaacatggcttagagtgtccgagctatccttggcctcacgaaggcattctcagctcttatgaccatgcttcgatacgtcgaggtcatcaggtttaccagcaagtgtgtgcgtcctgccactcaatgtcgctaatttcctaccgtgatcttgttggtgttgcatacactgaagaagaaactaaggccatggcagcagaaattgaggtggttgatggccctaatgatgagggtgagatgttcatccgccctgggaagttgagtgatcgttttccacagccttacccaaatgaagcagctgcaaggtttgcaaatggtggggcttatcctcctgatctaagtcttatcactaaggcccggcataacggtcaaaactatgtttttgctcttctaactggctaccgggaccctcctgctggtgtttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgncacagaagctcagatggggaaagatgtggtgtcatttttaacttgngctgctgaaccagaaatggaagagagaaaactgatggggctcaagtggatatttgtactgtcccttgcactgcttcaagctgcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64894" stop="71508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65194" g_stop="65226" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65227" i_stop="65343" i_length="117">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65344" g_stop="65441" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="131" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65442" i_stop="69947" i_length="4506">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69948" g_stop="70135" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="319" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70136" i_stop="70287" i_length="152">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70288" g_stop="70567" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="599" r_length="280" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="671" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70935" g_stop="71051" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="788" r_length="117" r_score="0.872"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71132" g_stop="71197" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="854" r_length="66" r_score="0.848"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159">
            <donor d_prob="0.960" d_score="0.84"/>
            <acceptor a_prob="0.988" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71357" g_stop="71411" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="855" r_stop="909" r_length="55" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E739579" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65194" e_stop="65226"/>
          <exon e_start="65344" e_stop="65441"/>
          <exon e_start="69948" e_stop="70135"/>
          <exon e_start="70288" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71051"/>
          <exon e_start="71132" e_stop="71197"/>
          <exon e_start="71357" e_stop="71411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCGGAAAGAAGATCAGGATAGGGCTCGATGGTATAAACTCATCACCATTCATGGATTTCCTTACATTTTTATTAGTTTTATCAAATTTTGCTCATCATTTACACCTGAAACTGTAAAGTTTGTTGCTTTATTTGTTTATAAATTCAGGGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCAAGCACTGTGCTTAAGACTTCCACCTTTAAGGTATTTTTATATATGCCCCACAGTTAAATGCTACAACTTAGAGGAAACAAAGGATCATATAGGGGAATCAATTAGGTGGGATTACGATTTTGTTGTTGTCACACTTACATTAGAAATGCTTTATCCAAGCCGAGGGTTATCAAGGACAACCTCTCTATCCGTATGAAGTAGGCGTAAGGTCTCCGTATACTCTATCCTCCCCATTTACAAGCTTGTATACTAGTATAGGAATGTCAATTGTCAAGCTATTTGTCACTGTTGGGAATAGGGTGCAATGTATATAGAGGGTTCATATAGACAATTTAAGTAGTTTGTGGTTGAGATGTAGTTGATTGATGAGTCTAGAGCCTAAAGGGCAAACAAATTGTTAAAGAAACCAAAGGGGCAAAGGTGCAGCCCCCCGACCTTGGCTTCTGTCCCTTAACAGATGTGAAATAAACATCAAAAGGAAGGCACATGGCCCCACACGCCTTATAAGGCATTGAGGCCCTTGGGCTTTACACCTTATTGGTGGGCCCCTTTCCCTTCTTTACCTAAGGCTTCCTCTTTCCCAAACCCTCCTCCCACCCATAATTTGTTCCAATGTCTCCGTGTAGGGTAAGAACTATATCATGTTAATAGATTAACATAAACGCCATGTCAAGTCTTGTAGCATTAGCAAGAGACGTAAGTCCACCAATTGCACTAAGACGTGGTACAAAAGGATCAAGAGGTTCCTTATTCTCTTCTTGAGGTTGAAACGGATCTTTACTTCAAGTGATCGAACAACAGACAACAATTGGAGTACTTAAAGGATGTGTCTTGTCCATGTAAAATCGTTTCAAAATTTTCTTAGTATAGACAAATTGATGGATAAAGACCCCGTGTGCTAAATGTTCAATATGCTGACCAATACTAAGTTTTTTATTTCCAAAATATATGAAATTCTTTCTTTAGATACTCAATTGCTTTTTGGACCTCTTTTGTAGTTCCAATGAGATTTATGTCATCAATATAAATAAAAAGTACTCCTAACAAATTCTAATGTTCTTTTCTTGATAAAAATATAAGGACAAATGACACCATTTATATAACCTTCTTTTATCAATTATGGACTGAGGCGATTATAACTGTATAATGAATTTTGTAATCTGATTGAGTATTTCTTGAGACTTTGAACTATATGCTTTAGGAATTTTTAATCCTTTTAGGATTTTAATATAAATTTCATTATGAAGCTGTAACCACATCCATTAGGTTTATTTCAAGCTTTTCATGTAGAACTAAATTGATGAGATATCCAAAAGTTATTGTAATAATCGGTGAATGTGACACTGAGTCTTTGAAAGAATCCTTGCGTAACAAGGCATGCCTTGTATCTTACAATTTTATATTTCTCATTTCTTTTTCGCTTGAGGACCCATTTATAGCCAACTGATTTTACACTATTAGGCGTTTGGAAACATGTTCCCAAAATCTCACATTTAGCAAGTGAGTTCAACTCTAATTGAATTGCCTCTTGCCATTTTGGCCAATCACAACTATGTCAGCATTCTTCGACAAATAGAGGTTCAAGATCCTCAATGTCTTGCATATTATTTAGTGCAACATTGTATGCAAAAACATTATCCACCATAATTTTCAATCAATTTAATTCTATCCAATCACCAGTAAAATATATTGATAATTCTTTATTCACTTCAGTCTCAAGTTCATTGATTTCTTTAGAAATATCAAGATTAATCAAATCTTGAATCTCTTTATGAGATTTTTTATGGTGTCATATGATCATTTTTCGTACTTCTTTTTCTAGGATTTTTATCCTTTGAACCCAATGGTGTACCACATTTCAAATGTGTTGAAGATTCAGAAGCTCTCACACTAGTAGATAGATGAAACTTTCGGAACATCAATTTCGATAGGCAATTCTCTGCTCGAATATGTGACTTAGTTATCCTTTTCAAATCAGTAAACACGTCCGGCATTTGATTTGCTATTTTCTGTATTGGATGATCTTTTGGACCTTACGTTCACATATAGGGGAACTGCTATATCATGGTGATCACGGAGCAGGCTATTGTTGCCACTTCTCTAAATCTTGCTGAAATAATAGCTATTCATAAAACAAGCAGCGAATGTGTATGGTTGAGATTAGTAATACATTTCATCAAAGAAAAATGTAGTCTGGAGTATGATATTAAGGTGTCCACAATCTTACTAGAAGACAATGTTGTAGACATAACCCAAGTAAAATGAGGGTTCATTGAAGGAGATAGAACAAAATATATTTCACCAAAATTATTCTTCAGACATGATCTCCAGAAGAACAGTGATGTTGATGTGCAACATTTCCGTTCAAGCAATAATCCAATGGATACATTCACCAATCCTTACCAACTTCAACTTTTGAAAAGATGGTATACAAGATTGGGATGCGAAGACTTAACCAACTGTATTGTGTTCTTTATTCGGGGTAGTACAATACACAGTGTACTCTTTTTTTCTTAACCAAGGTTTTAGCCCTTTGGGTTTTCTTAGTAAGATATTTAGTGAGGTAGCAAACTATGCGTATTAAGTATAACTATATATATTTGTCCTTTCACTAGAACTTCTCTTTTACATGAACATCCAAGGGAGAGTGTTGTAAAAGATATGGATGCTCATGGGACCTACTAATGTTTACTTCTTGCTTTCACTTTGGCTATAAATAGCCTTTTCAAACGAACAAAAGATATACAAGAACAACTTTTTCTCTTACTCTCCCCCCCTTTTGTTAAGAATAGTTCTCTCCCTCTCTCCTTCTTGTTATTTTAGTTTATCACTTCTGTATTTATTTTAATACCAACAAATGATAGTGATAAACTAAATTAACAAAAAGTTGAGTGAGGTAGAGAACAATCTGTTCTTGTTTTTCTTTTGTTTGTTTGAAAAGACTATTTATAGCCAAAGTGAAAGAAACAAACTTGTTTCTTGGCCACCAATGAGGAGATTGATCGGGTAAGTGAAAATAGGCCATAAATGGGTGGGTCTCATACATGACATCCACCCTTATTTTACAACACTCCCCCTTGAATGTCTAGGTAAAAGAAAGGTTCTAGTGAAAGTTTACCATTATATGTGCAATTTCTTTTAGTAAGCTTCAGGTTTACCATGACATGAATTTCATATTAATAAACGTCTAGTTTACTGTGGCATGTGATTTCATCATGCTTATATTTGTAGTACATTAGCTCTTCTGGTGTCCTTGATAATTAATTTTGTACTATCAAATATTACTTGGATACTGCTGGTACCATAAAAGAAGCTTAACTAGAAGGGCAGTGCAAACCTGAAAGGATAGTGGAGAGTTGGATCATGGTTTTTGACTCCTAAGGGAAGTGAGTTTTCCATATACTTTCTGCAAACAATCTTCTCGCATAGTTGTTCAAAGAACCTGGTTCTTTGAGTGCTTAATATGCAGCCAAACTAACACTACGGATACTACATGATATTTCATGTATTCCTATAGTTAGCTAGAGAAAGCGATGATGGATCTCGATGCATGGTAGAAGAGCTACTTGACCATGTTTCAATATCTCAAAATGAAACTAAAGAACTTGATTTCCATTTTCTTGTGGTGGGTCTGCCATAAGAATAAACGTGAACCCAGCGCTGCATTTACCCCTGGCAGAGACTAGTAACTATTTGTCCTACAATCTGCACATCATTAGTTTCACAAGAAAATATTAAATAAGAGTGGTGAAGAGGAACTTGAGATGTTTCGAAGACAAATACAGTTCCATCCAGATGATAAAGGCTAACAACTTTTTGGTTTAATAGAACTACTGGAATCCCTACATGTTTAAGTATGTGATGCACTTTTGTATCGTTATACTTTCCACATTGTGCAGACTGCAGAGTTCCCAGCACACTCTTACTGCTGTTTTGAATACAATCCTAACCATTTCAGAAAGAGTAAAAAGCAATGCATAGTGGTAGATGGTTCAAACGTGTCAGTAGACATCGCAAATTTCACTATCAGTTTTGTGAATCGCTTGAGACTTATTGTTGTGCCCAGTTTGGTTTACATGATTTGATTCTTCAGATCCCATATTTCTTTGGTGAATATAATTGAGAGTGTCATTCATATAACTACTAATTCATATATCTATGAGGATGTAAACTATGCAAAATTAGTTTCTCATGCCATTTCATCCCACAAGGAGCAAAATTTCTTATTGGAAGAGCCATCATGCAGGTGAACCTCTAATACGAGTAAAATAATGTGTATCCTAGTGGTGCAGGGTATAAACAATTGTAATGTACCCTTTAATTGTCTTTTTTTCTATCTTTTTGGTGTTATATGAACATATGCTAATGACTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGCTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGTTCTGTTGAATCCTTTACATTAGCGTTGTATGGTCAATAAATTTTATGATCATGGAATAATTTACAACTGATTAAATTACTTTGTTATTTGTTTCAAAGCATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTCGTGAGTATATGCTGTGCTGCCACATGATAATTAAAGTTCATTGGAGGCTACAGAAAACATTTCAACCTTTTGTTTATTCAAAACTAAATTTAGCATGAGTCTTCAATGAAATGGATACCCCATTTAGTTTAACGCCTTTATTTGCCTGACAGGATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTGGTAAGTCGCAATCTTCCATTTGGTCCTTCTCTTGCAGTATGATAGTCACTATATTCAACCTCTGCATTTTGAATGTTGAACTGATATTGGATCCTCATTGACAGTTGAATGTGCCATTAAATGAATTTACTGACCTCTTGGGTATTGTAATTTCTACAGATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACT</genome_strand>
        <mrna_strand>GTTTCGGAAAGAAGATCAGGATAGGGCTCGATG.....................................................................................................................GGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCCAGCACTGTGCTTAAGACTTCCACCTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTC........................................................................................................................................................GATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCATCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG...................................................................GCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTTTCG....................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGNCACAGAAGCTCAG................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGNGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG...............................................................................................................................................................ATGGGGCTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737149" ref_strand="+" ref_description="SGN-E737149 [LC08CF05]">
      <seq>gtttcggaaagaagatcaggatagggctcgatgggtttggaagaattaatcgtttcatcgcgagagcagctcacagagacgaaaacaagctttcaaatgccagcactgtgcttaagacttccacctttaagcatgactcagatggttttggatctgctgggttaaagtctttcagagcatttgcagtggttggtgctggaatctctgggctacttagctttgcaggagttgcttattctgatgaggccgaacatggcttagagtgtccgagctatccttggcctcacgaaggcattctcagctcttatgaccatgcttcgatacgtcgaggtcatcaggtttaccagcaagtgtgtgcgtcctgccactcaatgtcgctaatttcctaccgtgatcttgttggtgttgcatacactgaagaagaaactaaggccatggcagcagaaattgaggtggttgatggccctaatgatgagggtgagatgttcatccgccctgggaagttgagtgatcgttttccacagccttacccaaatgaagcagctgcaaggtttgcaaatggtggggcttatcctcctgatctaagtcttatcactaaggcccggcataacggtcaaaactatgtttttgctcttctaactggctaccgggaccctcctgctggtgtttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64894" stop="71350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65194" g_stop="65226" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65227" i_stop="65343" i_length="117">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65344" g_stop="65441" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="131" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65442" i_stop="69947" i_length="4506">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69948" g_stop="70135" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="319" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70136" i_stop="70287" i_length="152">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70288" g_stop="70567" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="599" r_length="280" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="671" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70935" g_stop="71051" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="788" r_length="117" r_score="0.889"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71132" g_stop="71175" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="832" r_length="44" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E737149" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65194" e_stop="65226"/>
          <exon e_start="65344" e_stop="65441"/>
          <exon e_start="69948" e_stop="70135"/>
          <exon e_start="70288" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71051"/>
          <exon e_start="71132" e_stop="71175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCGGAAAGAAGATCAGGATAGGGCTCGATGGTATAAACTCATCACCATTCATGGATTTCCTTACATTTTTATTAGTTTTATCAAATTTTGCTCATCATTTACACCTGAAACTGTAAAGTTTGTTGCTTTATTTGTTTATAAATTCAGGGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCAAGCACTGTGCTTAAGACTTCCACCTTTAAGGTATTTTTATATATGCCCCACAGTTAAATGCTACAACTTAGAGGAAACAAAGGATCATATAGGGGAATCAATTAGGTGGGATTACGATTTTGTTGTTGTCACACTTACATTAGAAATGCTTTATCCAAGCCGAGGGTTATCAAGGACAACCTCTCTATCCGTATGAAGTAGGCGTAAGGTCTCCGTATACTCTATCCTCCCCATTTACAAGCTTGTATACTAGTATAGGAATGTCAATTGTCAAGCTATTTGTCACTGTTGGGAATAGGGTGCAATGTATATAGAGGGTTCATATAGACAATTTAAGTAGTTTGTGGTTGAGATGTAGTTGATTGATGAGTCTAGAGCCTAAAGGGCAAACAAATTGTTAAAGAAACCAAAGGGGCAAAGGTGCAGCCCCCCGACCTTGGCTTCTGTCCCTTAACAGATGTGAAATAAACATCAAAAGGAAGGCACATGGCCCCACACGCCTTATAAGGCATTGAGGCCCTTGGGCTTTACACCTTATTGGTGGGCCCCTTTCCCTTCTTTACCTAAGGCTTCCTCTTTCCCAAACCCTCCTCCCACCCATAATTTGTTCCAATGTCTCCGTGTAGGGTAAGAACTATATCATGTTAATAGATTAACATAAACGCCATGTCAAGTCTTGTAGCATTAGCAAGAGACGTAAGTCCACCAATTGCACTAAGACGTGGTACAAAAGGATCAAGAGGTTCCTTATTCTCTTCTTGAGGTTGAAACGGATCTTTACTTCAAGTGATCGAACAACAGACAACAATTGGAGTACTTAAAGGATGTGTCTTGTCCATGTAAAATCGTTTCAAAATTTTCTTAGTATAGACAAATTGATGGATAAAGACCCCGTGTGCTAAATGTTCAATATGCTGACCAATACTAAGTTTTTTATTTCCAAAATATATGAAATTCTTTCTTTAGATACTCAATTGCTTTTTGGACCTCTTTTGTAGTTCCAATGAGATTTATGTCATCAATATAAATAAAAAGTACTCCTAACAAATTCTAATGTTCTTTTCTTGATAAAAATATAAGGACAAATGACACCATTTATATAACCTTCTTTTATCAATTATGGACTGAGGCGATTATAACTGTATAATGAATTTTGTAATCTGATTGAGTATTTCTTGAGACTTTGAACTATATGCTTTAGGAATTTTTAATCCTTTTAGGATTTTAATATAAATTTCATTATGAAGCTGTAACCACATCCATTAGGTTTATTTCAAGCTTTTCATGTAGAACTAAATTGATGAGATATCCAAAAGTTATTGTAATAATCGGTGAATGTGACACTGAGTCTTTGAAAGAATCCTTGCGTAACAAGGCATGCCTTGTATCTTACAATTTTATATTTCTCATTTCTTTTTCGCTTGAGGACCCATTTATAGCCAACTGATTTTACACTATTAGGCGTTTGGAAACATGTTCCCAAAATCTCACATTTAGCAAGTGAGTTCAACTCTAATTGAATTGCCTCTTGCCATTTTGGCCAATCACAACTATGTCAGCATTCTTCGACAAATAGAGGTTCAAGATCCTCAATGTCTTGCATATTATTTAGTGCAACATTGTATGCAAAAACATTATCCACCATAATTTTCAATCAATTTAATTCTATCCAATCACCAGTAAAATATATTGATAATTCTTTATTCACTTCAGTCTCAAGTTCATTGATTTCTTTAGAAATATCAAGATTAATCAAATCTTGAATCTCTTTATGAGATTTTTTATGGTGTCATATGATCATTTTTCGTACTTCTTTTTCTAGGATTTTTATCCTTTGAACCCAATGGTGTACCACATTTCAAATGTGTTGAAGATTCAGAAGCTCTCACACTAGTAGATAGATGAAACTTTCGGAACATCAATTTCGATAGGCAATTCTCTGCTCGAATATGTGACTTAGTTATCCTTTTCAAATCAGTAAACACGTCCGGCATTTGATTTGCTATTTTCTGTATTGGATGATCTTTTGGACCTTACGTTCACATATAGGGGAACTGCTATATCATGGTGATCACGGAGCAGGCTATTGTTGCCACTTCTCTAAATCTTGCTGAAATAATAGCTATTCATAAAACAAGCAGCGAATGTGTATGGTTGAGATTAGTAATACATTTCATCAAAGAAAAATGTAGTCTGGAGTATGATATTAAGGTGTCCACAATCTTACTAGAAGACAATGTTGTAGACATAACCCAAGTAAAATGAGGGTTCATTGAAGGAGATAGAACAAAATATATTTCACCAAAATTATTCTTCAGACATGATCTCCAGAAGAACAGTGATGTTGATGTGCAACATTTCCGTTCAAGCAATAATCCAATGGATACATTCACCAATCCTTACCAACTTCAACTTTTGAAAAGATGGTATACAAGATTGGGATGCGAAGACTTAACCAACTGTATTGTGTTCTTTATTCGGGGTAGTACAATACACAGTGTACTCTTTTTTTCTTAACCAAGGTTTTAGCCCTTTGGGTTTTCTTAGTAAGATATTTAGTGAGGTAGCAAACTATGCGTATTAAGTATAACTATATATATTTGTCCTTTCACTAGAACTTCTCTTTTACATGAACATCCAAGGGAGAGTGTTGTAAAAGATATGGATGCTCATGGGACCTACTAATGTTTACTTCTTGCTTTCACTTTGGCTATAAATAGCCTTTTCAAACGAACAAAAGATATACAAGAACAACTTTTTCTCTTACTCTCCCCCCCTTTTGTTAAGAATAGTTCTCTCCCTCTCTCCTTCTTGTTATTTTAGTTTATCACTTCTGTATTTATTTTAATACCAACAAATGATAGTGATAAACTAAATTAACAAAAAGTTGAGTGAGGTAGAGAACAATCTGTTCTTGTTTTTCTTTTGTTTGTTTGAAAAGACTATTTATAGCCAAAGTGAAAGAAACAAACTTGTTTCTTGGCCACCAATGAGGAGATTGATCGGGTAAGTGAAAATAGGCCATAAATGGGTGGGTCTCATACATGACATCCACCCTTATTTTACAACACTCCCCCTTGAATGTCTAGGTAAAAGAAAGGTTCTAGTGAAAGTTTACCATTATATGTGCAATTTCTTTTAGTAAGCTTCAGGTTTACCATGACATGAATTTCATATTAATAAACGTCTAGTTTACTGTGGCATGTGATTTCATCATGCTTATATTTGTAGTACATTAGCTCTTCTGGTGTCCTTGATAATTAATTTTGTACTATCAAATATTACTTGGATACTGCTGGTACCATAAAAGAAGCTTAACTAGAAGGGCAGTGCAAACCTGAAAGGATAGTGGAGAGTTGGATCATGGTTTTTGACTCCTAAGGGAAGTGAGTTTTCCATATACTTTCTGCAAACAATCTTCTCGCATAGTTGTTCAAAGAACCTGGTTCTTTGAGTGCTTAATATGCAGCCAAACTAACACTACGGATACTACATGATATTTCATGTATTCCTATAGTTAGCTAGAGAAAGCGATGATGGATCTCGATGCATGGTAGAAGAGCTACTTGACCATGTTTCAATATCTCAAAATGAAACTAAAGAACTTGATTTCCATTTTCTTGTGGTGGGTCTGCCATAAGAATAAACGTGAACCCAGCGCTGCATTTACCCCTGGCAGAGACTAGTAACTATTTGTCCTACAATCTGCACATCATTAGTTTCACAAGAAAATATTAAATAAGAGTGGTGAAGAGGAACTTGAGATGTTTCGAAGACAAATACAGTTCCATCCAGATGATAAAGGCTAACAACTTTTTGGTTTAATAGAACTACTGGAATCCCTACATGTTTAAGTATGTGATGCACTTTTGTATCGTTATACTTTCCACATTGTGCAGACTGCAGAGTTCCCAGCACACTCTTACTGCTGTTTTGAATACAATCCTAACCATTTCAGAAAGAGTAAAAAGCAATGCATAGTGGTAGATGGTTCAAACGTGTCAGTAGACATCGCAAATTTCACTATCAGTTTTGTGAATCGCTTGAGACTTATTGTTGTGCCCAGTTTGGTTTACATGATTTGATTCTTCAGATCCCATATTTCTTTGGTGAATATAATTGAGAGTGTCATTCATATAACTACTAATTCATATATCTATGAGGATGTAAACTATGCAAAATTAGTTTCTCATGCCATTTCATCCCACAAGGAGCAAAATTTCTTATTGGAAGAGCCATCATGCAGGTGAACCTCTAATACGAGTAAAATAATGTGTATCCTAGTGGTGCAGGGTATAAACAATTGTAATGTACCCTTTAATTGTCTTTTTTTCTATCTTTTTGGTGTTATATGAACATATGCTAATGACTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGCTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGTTCTGTTGAATCCTTTACATTAGCGTTGTATGGTCAATAAATTTTATGATCATGGAATAATTTACAACTGATTAAATTACTTTGTTATTTGTTTCAAAGCATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTCGTGAGTATATGCTGTGCTGCCACATGATAATTAAAGTTCATTGGAGGCTACAGAAAACATTTCAACCTTTTGTTTATTCAAAACTAAATTTAGCATGAGTCTTCAATGAAATGGATACCCCATTTAGTTTAACGCCTTTATTTGCCTGACAGGATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCC</genome_strand>
        <mrna_strand>GTTTCGGAAAGAAGATCAGGATAGGGCTCGATG.....................................................................................................................GGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCCAGCACTGTGCTTAAGACTTCCACCTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTC........................................................................................................................................................GATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCATCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG...................................................................GCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTTTCG....................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727358" ref_strand="+" ref_description="SGN-E727358 [LA14BH07]">
      <seq>atcaggatagggctcgatgggtttggaagaattaatcgtttcatcgcgagagcagctcacagagacgaaaacaagctttcaaatgccagcactgtgcttaagacttccacctttaagcatgactcagatggttttggatctgctgggttaaagtctttcagagcatttgcagtggttggtgctggaatctctgggctacttagctttgcaggagttgcttattctgatgaggccgaacatggcttagagcgtccgagctatccttggcctcacgaaggcattctcagctcttatgaccatgcttcgatacgtcgaggtcatcaggtttaccagcaagtgtgtgcgtcctgccactcaatgtcgctaatttcctaccgtgatcttgttggtgttgcatacactgaagaagaaactaaggccatggcagcagaaattgaggtggttgatggccctaatgatgagggtgagatgttcatccgccctgggaagttgagtgatcgttttccacagccttacccaaatgaagcagctgcaaggtttgcaaatggtggggcttatcctcctgatctaagtcttatcactaaggcccggcataacggtcaaaactatgtttttgctcttctaactggctaccgggaccctcctgctggtgtctcgattcgggaaggtcttcactataacccttacttccctggtggagctatagcaatgcctaaaatgcttaatgatggtgctgttgagtatgaagatggtatacctgcaactgaggcacaaatgggaaaagatgttgtgtcgttcttgtcatgggctgctgagccagaaatggaagagagaaagctgatgggtttcaaatggatatttgtcttatcacttgcactttctccagcagcttactaccgtcgcctgagatggtctgtcctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64908" stop="71740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65208" g_stop="65226" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65227" i_stop="65343" i_length="117">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65344" g_stop="65441" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="117" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65442" i_stop="69947" i_length="4506">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69948" g_stop="70135" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="305" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70136" i_stop="70287" i_length="152">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70288" g_stop="70567" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="585" r_length="280" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="657" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70935" g_stop="71051" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="774" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71132" g_stop="71197" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="840" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71357" g_stop="71440" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="841" r_stop="924" r_length="84" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E727358" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>924</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65208" e_stop="65226"/>
          <exon e_start="65344" e_stop="65441"/>
          <exon e_start="69948" e_stop="70135"/>
          <exon e_start="70288" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71051"/>
          <exon e_start="71132" e_stop="71197"/>
          <exon e_start="71357" e_stop="71440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGGATAGGGCTCGATGGTATAAACTCATCACCATTCATGGATTTCCTTACATTTTTATTAGTTTTATCAAATTTTGCTCATCATTTACACCTGAAACTGTAAAGTTTGTTGCTTTATTTGTTTATAAATTCAGGGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCAAGCACTGTGCTTAAGACTTCCACCTTTAAGGTATTTTTATATATGCCCCACAGTTAAATGCTACAACTTAGAGGAAACAAAGGATCATATAGGGGAATCAATTAGGTGGGATTACGATTTTGTTGTTGTCACACTTACATTAGAAATGCTTTATCCAAGCCGAGGGTTATCAAGGACAACCTCTCTATCCGTATGAAGTAGGCGTAAGGTCTCCGTATACTCTATCCTCCCCATTTACAAGCTTGTATACTAGTATAGGAATGTCAATTGTCAAGCTATTTGTCACTGTTGGGAATAGGGTGCAATGTATATAGAGGGTTCATATAGACAATTTAAGTAGTTTGTGGTTGAGATGTAGTTGATTGATGAGTCTAGAGCCTAAAGGGCAAACAAATTGTTAAAGAAACCAAAGGGGCAAAGGTGCAGCCCCCCGACCTTGGCTTCTGTCCCTTAACAGATGTGAAATAAACATCAAAAGGAAGGCACATGGCCCCACACGCCTTATAAGGCATTGAGGCCCTTGGGCTTTACACCTTATTGGTGGGCCCCTTTCCCTTCTTTACCTAAGGCTTCCTCTTTCCCAAACCCTCCTCCCACCCATAATTTGTTCCAATGTCTCCGTGTAGGGTAAGAACTATATCATGTTAATAGATTAACATAAACGCCATGTCAAGTCTTGTAGCATTAGCAAGAGACGTAAGTCCACCAATTGCACTAAGACGTGGTACAAAAGGATCAAGAGGTTCCTTATTCTCTTCTTGAGGTTGAAACGGATCTTTACTTCAAGTGATCGAACAACAGACAACAATTGGAGTACTTAAAGGATGTGTCTTGTCCATGTAAAATCGTTTCAAAATTTTCTTAGTATAGACAAATTGATGGATAAAGACCCCGTGTGCTAAATGTTCAATATGCTGACCAATACTAAGTTTTTTATTTCCAAAATATATGAAATTCTTTCTTTAGATACTCAATTGCTTTTTGGACCTCTTTTGTAGTTCCAATGAGATTTATGTCATCAATATAAATAAAAAGTACTCCTAACAAATTCTAATGTTCTTTTCTTGATAAAAATATAAGGACAAATGACACCATTTATATAACCTTCTTTTATCAATTATGGACTGAGGCGATTATAACTGTATAATGAATTTTGTAATCTGATTGAGTATTTCTTGAGACTTTGAACTATATGCTTTAGGAATTTTTAATCCTTTTAGGATTTTAATATAAATTTCATTATGAAGCTGTAACCACATCCATTAGGTTTATTTCAAGCTTTTCATGTAGAACTAAATTGATGAGATATCCAAAAGTTATTGTAATAATCGGTGAATGTGACACTGAGTCTTTGAAAGAATCCTTGCGTAACAAGGCATGCCTTGTATCTTACAATTTTATATTTCTCATTTCTTTTTCGCTTGAGGACCCATTTATAGCCAACTGATTTTACACTATTAGGCGTTTGGAAACATGTTCCCAAAATCTCACATTTAGCAAGTGAGTTCAACTCTAATTGAATTGCCTCTTGCCATTTTGGCCAATCACAACTATGTCAGCATTCTTCGACAAATAGAGGTTCAAGATCCTCAATGTCTTGCATATTATTTAGTGCAACATTGTATGCAAAAACATTATCCACCATAATTTTCAATCAATTTAATTCTATCCAATCACCAGTAAAATATATTGATAATTCTTTATTCACTTCAGTCTCAAGTTCATTGATTTCTTTAGAAATATCAAGATTAATCAAATCTTGAATCTCTTTATGAGATTTTTTATGGTGTCATATGATCATTTTTCGTACTTCTTTTTCTAGGATTTTTATCCTTTGAACCCAATGGTGTACCACATTTCAAATGTGTTGAAGATTCAGAAGCTCTCACACTAGTAGATAGATGAAACTTTCGGAACATCAATTTCGATAGGCAATTCTCTGCTCGAATATGTGACTTAGTTATCCTTTTCAAATCAGTAAACACGTCCGGCATTTGATTTGCTATTTTCTGTATTGGATGATCTTTTGGACCTTACGTTCACATATAGGGGAACTGCTATATCATGGTGATCACGGAGCAGGCTATTGTTGCCACTTCTCTAAATCTTGCTGAAATAATAGCTATTCATAAAACAAGCAGCGAATGTGTATGGTTGAGATTAGTAATACATTTCATCAAAGAAAAATGTAGTCTGGAGTATGATATTAAGGTGTCCACAATCTTACTAGAAGACAATGTTGTAGACATAACCCAAGTAAAATGAGGGTTCATTGAAGGAGATAGAACAAAATATATTTCACCAAAATTATTCTTCAGACATGATCTCCAGAAGAACAGTGATGTTGATGTGCAACATTTCCGTTCAAGCAATAATCCAATGGATACATTCACCAATCCTTACCAACTTCAACTTTTGAAAAGATGGTATACAAGATTGGGATGCGAAGACTTAACCAACTGTATTGTGTTCTTTATTCGGGGTAGTACAATACACAGTGTACTCTTTTTTTCTTAACCAAGGTTTTAGCCCTTTGGGTTTTCTTAGTAAGATATTTAGTGAGGTAGCAAACTATGCGTATTAAGTATAACTATATATATTTGTCCTTTCACTAGAACTTCTCTTTTACATGAACATCCAAGGGAGAGTGTTGTAAAAGATATGGATGCTCATGGGACCTACTAATGTTTACTTCTTGCTTTCACTTTGGCTATAAATAGCCTTTTCAAACGAACAAAAGATATACAAGAACAACTTTTTCTCTTACTCTCCCCCCCTTTTGTTAAGAATAGTTCTCTCCCTCTCTCCTTCTTGTTATTTTAGTTTATCACTTCTGTATTTATTTTAATACCAACAAATGATAGTGATAAACTAAATTAACAAAAAGTTGAGTGAGGTAGAGAACAATCTGTTCTTGTTTTTCTTTTGTTTGTTTGAAAAGACTATTTATAGCCAAAGTGAAAGAAACAAACTTGTTTCTTGGCCACCAATGAGGAGATTGATCGGGTAAGTGAAAATAGGCCATAAATGGGTGGGTCTCATACATGACATCCACCCTTATTTTACAACACTCCCCCTTGAATGTCTAGGTAAAAGAAAGGTTCTAGTGAAAGTTTACCATTATATGTGCAATTTCTTTTAGTAAGCTTCAGGTTTACCATGACATGAATTTCATATTAATAAACGTCTAGTTTACTGTGGCATGTGATTTCATCATGCTTATATTTGTAGTACATTAGCTCTTCTGGTGTCCTTGATAATTAATTTTGTACTATCAAATATTACTTGGATACTGCTGGTACCATAAAAGAAGCTTAACTAGAAGGGCAGTGCAAACCTGAAAGGATAGTGGAGAGTTGGATCATGGTTTTTGACTCCTAAGGGAAGTGAGTTTTCCATATACTTTCTGCAAACAATCTTCTCGCATAGTTGTTCAAAGAACCTGGTTCTTTGAGTGCTTAATATGCAGCCAAACTAACACTACGGATACTACATGATATTTCATGTATTCCTATAGTTAGCTAGAGAAAGCGATGATGGATCTCGATGCATGGTAGAAGAGCTACTTGACCATGTTTCAATATCTCAAAATGAAACTAAAGAACTTGATTTCCATTTTCTTGTGGTGGGTCTGCCATAAGAATAAACGTGAACCCAGCGCTGCATTTACCCCTGGCAGAGACTAGTAACTATTTGTCCTACAATCTGCACATCATTAGTTTCACAAGAAAATATTAAATAAGAGTGGTGAAGAGGAACTTGAGATGTTTCGAAGACAAATACAGTTCCATCCAGATGATAAAGGCTAACAACTTTTTGGTTTAATAGAACTACTGGAATCCCTACATGTTTAAGTATGTGATGCACTTTTGTATCGTTATACTTTCCACATTGTGCAGACTGCAGAGTTCCCAGCACACTCTTACTGCTGTTTTGAATACAATCCTAACCATTTCAGAAAGAGTAAAAAGCAATGCATAGTGGTAGATGGTTCAAACGTGTCAGTAGACATCGCAAATTTCACTATCAGTTTTGTGAATCGCTTGAGACTTATTGTTGTGCCCAGTTTGGTTTACATGATTTGATTCTTCAGATCCCATATTTCTTTGGTGAATATAATTGAGAGTGTCATTCATATAACTACTAATTCATATATCTATGAGGATGTAAACTATGCAAAATTAGTTTCTCATGCCATTTCATCCCACAAGGAGCAAAATTTCTTATTGGAAGAGCCATCATGCAGGTGAACCTCTAATACGAGTAAAATAATGTGTATCCTAGTGGTGCAGGGTATAAACAATTGTAATGTACCCTTTAATTGTCTTTTTTTCTATCTTTTTGGTGTTATATGAACATATGCTAATGACTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGCTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGTTCTGTTGAATCCTTTACATTAGCGTTGTATGGTCAATAAATTTTATGATCATGGAATAATTTACAACTGATTAAATTACTTTGTTATTTGTTTCAAAGCATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTCGTGAGTATATGCTGTGCTGCCACATGATAATTAAAGTTCATTGGAGGCTACAGAAAACATTTCAACCTTTTGTTTATTCAAAACTAAATTTAGCATGAGTCTTCAATGAAATGGATACCCCATTTAGTTTAACGCCTTTATTTGCCTGACAGGATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTGGTAAGTCGCAATCTTCCATTTGGTCCTTCTCTTGCAGTATGATAGTCACTATATTCAACCTCTGCATTTTGAATGTTGAACTGATATTGGATCCTCATTGACAGTTGAATGTGCCATTAAATGAATTTACTGACCTCTTGGGTATTGTAATTTCTACAGATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAA</genome_strand>
        <mrna_strand>ATCAGGATAGGGCTCGATG.....................................................................................................................GGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCCAGCACTGTGCTTAAGACTTCCACCTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGCGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTC........................................................................................................................................................GATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCATCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG...................................................................GCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCG....................................................................................................................................................................................................................................ATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAA................................................................................ATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTG...............................................................................................................................................................ATGGGTTTCAAATGGATATTTGTCTTATCACTTGCACTTTCTCCAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729639" ref_strand="+" ref_description="SGN-E729639 [LA21CF05]">
      <seq>gcttaagacttccacctttaagcatgactcagatggttttggatctgctgggttaaagtctttcagagcatttgcagtggttggtgctggaatctctgggctacttagctttgcaggagttgcttattctgatgaggccgaacatggcttagagtgtccgagctatccttggcctcacgaaggcattctcagctcttatgaccatgcttcgatacgtcgaggtcatcaggtttaccagcaagtgtgtgcgtcctgccactcaatgtcgctaatttcctaccgtgatcttgttggtgttgcatacactgaagaagaaactaaggccatggcagcagaaattgaggtggttgatggccctaatgatgagggtgagatgttcatccgccctgggaagttgagtgatcgttttccacagccttacccaaatgaagcagctgcaaggtttgcaaatggtggggcttatcctcctgatctaagtcttatcactaaggcccggcataacggtcaaaactatgtttttgctcttctaactggctaccgggaccctcctgctggtgtctcgattcgggaaggtcttcactataacccttacttccctggtggagctatagcaatgcctaaaatgcttaatgatggtgctgttgagtatgaagatggtatacctgcaactgaggcacaaatgggaaaagatgttgtgtcgttcttgtcatgggctgctgagccagaaatggaagagagaaagctgatgggtttcaaatggatatttgtcttatcacttgcacttctccaagcagcttactaccgtcgcctgagatggtctgtcctgaaatctcgcaaattggtcctcgatgttgtcaactgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65120" stop="71776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65420" g_stop="65441" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65442" i_stop="69947" i_length="4506">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69948" g_stop="70135" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="210" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70136" i_stop="70287" i_length="152">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70288" g_stop="70567" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="490" r_length="280" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="562" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70935" g_stop="71051" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="679" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71132" g_stop="71197" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="745" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71357" g_stop="71476" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="865" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E729639" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65420" e_stop="65441"/>
          <exon e_start="69948" e_stop="70135"/>
          <exon e_start="70288" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71051"/>
          <exon e_start="71132" e_stop="71197"/>
          <exon e_start="71357" e_stop="71476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAAGACTTCCACCTTTAAGGTATTTTTATATATGCCCCACAGTTAAATGCTACAACTTAGAGGAAACAAAGGATCATATAGGGGAATCAATTAGGTGGGATTACGATTTTGTTGTTGTCACACTTACATTAGAAATGCTTTATCCAAGCCGAGGGTTATCAAGGACAACCTCTCTATCCGTATGAAGTAGGCGTAAGGTCTCCGTATACTCTATCCTCCCCATTTACAAGCTTGTATACTAGTATAGGAATGTCAATTGTCAAGCTATTTGTCACTGTTGGGAATAGGGTGCAATGTATATAGAGGGTTCATATAGACAATTTAAGTAGTTTGTGGTTGAGATGTAGTTGATTGATGAGTCTAGAGCCTAAAGGGCAAACAAATTGTTAAAGAAACCAAAGGGGCAAAGGTGCAGCCCCCCGACCTTGGCTTCTGTCCCTTAACAGATGTGAAATAAACATCAAAAGGAAGGCACATGGCCCCACACGCCTTATAAGGCATTGAGGCCCTTGGGCTTTACACCTTATTGGTGGGCCCCTTTCCCTTCTTTACCTAAGGCTTCCTCTTTCCCAAACCCTCCTCCCACCCATAATTTGTTCCAATGTCTCCGTGTAGGGTAAGAACTATATCATGTTAATAGATTAACATAAACGCCATGTCAAGTCTTGTAGCATTAGCAAGAGACGTAAGTCCACCAATTGCACTAAGACGTGGTACAAAAGGATCAAGAGGTTCCTTATTCTCTTCTTGAGGTTGAAACGGATCTTTACTTCAAGTGATCGAACAACAGACAACAATTGGAGTACTTAAAGGATGTGTCTTGTCCATGTAAAATCGTTTCAAAATTTTCTTAGTATAGACAAATTGATGGATAAAGACCCCGTGTGCTAAATGTTCAATATGCTGACCAATACTAAGTTTTTTATTTCCAAAATATATGAAATTCTTTCTTTAGATACTCAATTGCTTTTTGGACCTCTTTTGTAGTTCCAATGAGATTTATGTCATCAATATAAATAAAAAGTACTCCTAACAAATTCTAATGTTCTTTTCTTGATAAAAATATAAGGACAAATGACACCATTTATATAACCTTCTTTTATCAATTATGGACTGAGGCGATTATAACTGTATAATGAATTTTGTAATCTGATTGAGTATTTCTTGAGACTTTGAACTATATGCTTTAGGAATTTTTAATCCTTTTAGGATTTTAATATAAATTTCATTATGAAGCTGTAACCACATCCATTAGGTTTATTTCAAGCTTTTCATGTAGAACTAAATTGATGAGATATCCAAAAGTTATTGTAATAATCGGTGAATGTGACACTGAGTCTTTGAAAGAATCCTTGCGTAACAAGGCATGCCTTGTATCTTACAATTTTATATTTCTCATTTCTTTTTCGCTTGAGGACCCATTTATAGCCAACTGATTTTACACTATTAGGCGTTTGGAAACATGTTCCCAAAATCTCACATTTAGCAAGTGAGTTCAACTCTAATTGAATTGCCTCTTGCCATTTTGGCCAATCACAACTATGTCAGCATTCTTCGACAAATAGAGGTTCAAGATCCTCAATGTCTTGCATATTATTTAGTGCAACATTGTATGCAAAAACATTATCCACCATAATTTTCAATCAATTTAATTCTATCCAATCACCAGTAAAATATATTGATAATTCTTTATTCACTTCAGTCTCAAGTTCATTGATTTCTTTAGAAATATCAAGATTAATCAAATCTTGAATCTCTTTATGAGATTTTTTATGGTGTCATATGATCATTTTTCGTACTTCTTTTTCTAGGATTTTTATCCTTTGAACCCAATGGTGTACCACATTTCAAATGTGTTGAAGATTCAGAAGCTCTCACACTAGTAGATAGATGAAACTTTCGGAACATCAATTTCGATAGGCAATTCTCTGCTCGAATATGTGACTTAGTTATCCTTTTCAAATCAGTAAACACGTCCGGCATTTGATTTGCTATTTTCTGTATTGGATGATCTTTTGGACCTTACGTTCACATATAGGGGAACTGCTATATCATGGTGATCACGGAGCAGGCTATTGTTGCCACTTCTCTAAATCTTGCTGAAATAATAGCTATTCATAAAACAAGCAGCGAATGTGTATGGTTGAGATTAGTAATACATTTCATCAAAGAAAAATGTAGTCTGGAGTATGATATTAAGGTGTCCACAATCTTACTAGAAGACAATGTTGTAGACATAACCCAAGTAAAATGAGGGTTCATTGAAGGAGATAGAACAAAATATATTTCACCAAAATTATTCTTCAGACATGATCTCCAGAAGAACAGTGATGTTGATGTGCAACATTTCCGTTCAAGCAATAATCCAATGGATACATTCACCAATCCTTACCAACTTCAACTTTTGAAAAGATGGTATACAAGATTGGGATGCGAAGACTTAACCAACTGTATTGTGTTCTTTATTCGGGGTAGTACAATACACAGTGTACTCTTTTTTTCTTAACCAAGGTTTTAGCCCTTTGGGTTTTCTTAGTAAGATATTTAGTGAGGTAGCAAACTATGCGTATTAAGTATAACTATATATATTTGTCCTTTCACTAGAACTTCTCTTTTACATGAACATCCAAGGGAGAGTGTTGTAAAAGATATGGATGCTCATGGGACCTACTAATGTTTACTTCTTGCTTTCACTTTGGCTATAAATAGCCTTTTCAAACGAACAAAAGATATACAAGAACAACTTTTTCTCTTACTCTCCCCCCCTTTTGTTAAGAATAGTTCTCTCCCTCTCTCCTTCTTGTTATTTTAGTTTATCACTTCTGTATTTATTTTAATACCAACAAATGATAGTGATAAACTAAATTAACAAAAAGTTGAGTGAGGTAGAGAACAATCTGTTCTTGTTTTTCTTTTGTTTGTTTGAAAAGACTATTTATAGCCAAAGTGAAAGAAACAAACTTGTTTCTTGGCCACCAATGAGGAGATTGATCGGGTAAGTGAAAATAGGCCATAAATGGGTGGGTCTCATACATGACATCCACCCTTATTTTACAACACTCCCCCTTGAATGTCTAGGTAAAAGAAAGGTTCTAGTGAAAGTTTACCATTATATGTGCAATTTCTTTTAGTAAGCTTCAGGTTTACCATGACATGAATTTCATATTAATAAACGTCTAGTTTACTGTGGCATGTGATTTCATCATGCTTATATTTGTAGTACATTAGCTCTTCTGGTGTCCTTGATAATTAATTTTGTACTATCAAATATTACTTGGATACTGCTGGTACCATAAAAGAAGCTTAACTAGAAGGGCAGTGCAAACCTGAAAGGATAGTGGAGAGTTGGATCATGGTTTTTGACTCCTAAGGGAAGTGAGTTTTCCATATACTTTCTGCAAACAATCTTCTCGCATAGTTGTTCAAAGAACCTGGTTCTTTGAGTGCTTAATATGCAGCCAAACTAACACTACGGATACTACATGATATTTCATGTATTCCTATAGTTAGCTAGAGAAAGCGATGATGGATCTCGATGCATGGTAGAAGAGCTACTTGACCATGTTTCAATATCTCAAAATGAAACTAAAGAACTTGATTTCCATTTTCTTGTGGTGGGTCTGCCATAAGAATAAACGTGAACCCAGCGCTGCATTTACCCCTGGCAGAGACTAGTAACTATTTGTCCTACAATCTGCACATCATTAGTTTCACAAGAAAATATTAAATAAGAGTGGTGAAGAGGAACTTGAGATGTTTCGAAGACAAATACAGTTCCATCCAGATGATAAAGGCTAACAACTTTTTGGTTTAATAGAACTACTGGAATCCCTACATGTTTAAGTATGTGATGCACTTTTGTATCGTTATACTTTCCACATTGTGCAGACTGCAGAGTTCCCAGCACACTCTTACTGCTGTTTTGAATACAATCCTAACCATTTCAGAAAGAGTAAAAAGCAATGCATAGTGGTAGATGGTTCAAACGTGTCAGTAGACATCGCAAATTTCACTATCAGTTTTGTGAATCGCTTGAGACTTATTGTTGTGCCCAGTTTGGTTTACATGATTTGATTCTTCAGATCCCATATTTCTTTGGTGAATATAATTGAGAGTGTCATTCATATAACTACTAATTCATATATCTATGAGGATGTAAACTATGCAAAATTAGTTTCTCATGCCATTTCATCCCACAAGGAGCAAAATTTCTTATTGGAAGAGCCATCATGCAGGTGAACCTCTAATACGAGTAAAATAATGTGTATCCTAGTGGTGCAGGGTATAAACAATTGTAATGTACCCTTTAATTGTCTTTTTTTCTATCTTTTTGGTGTTATATGAACATATGCTAATGACTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGCTCCGAGCAATTAAAGTTTTTATCACTAAGTGTGTTCTGTTGAATCCTTTACATTAGCGTTGTATGGTCAATAAATTTTATGATCATGGAATAATTTACAACTGATTAAATTACTTTGTTATTTGTTTCAAAGCATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTCGTGAGTATATGCTGTGCTGCCACATGATAATTAAAGTTCATTGGAGGCTACAGAAAACATTTCAACCTTTTGTTTATTCAAAACTAAATTTAGCATGAGTCTTCAATGAAATGGATACCCCATTTAGTTTAACGCCTTTATTTGCCTGACAGGATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTGGTAAGTCGCAATCTTCCATTTGGTCCTTCTCTTGCAGTATGATAGTCACTATATTCAACCTCTGCATTTTGAATGTTGAACTGATATTGGATCCTCATTGACAGTTGAATGTGCCATTAAATGAATTTACTGACCTCTTGGGTATTGTAATTTCTACAGATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGATTT</genome_strand>
        <mrna_strand>GCTTAAGACTTCCACCTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTC........................................................................................................................................................GATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCATCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG...................................................................GCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCG....................................................................................................................................................................................................................................ATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAA................................................................................ATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTG...............................................................................................................................................................ATGGGTTTCAAATGGATATTTGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553071" ref_strand="+" ref_description="SGN-E553071 [cTSB-5-O9]">
      <seq>agtctttcagagcatttgcagtggttggtgctggaatctctgggctacttagctttgcaggagttgcttattctgatgaggccgaacatggcttagagtgtccgagctatccttggcctcacgaaggcattctcagctcttatgaccatgcttcgatacgtcgaggtcatcaggtttaccagcaagtgtgtgcgtcctgccactcaatgtcgctaatttcctaccgtgatcttgttggtgttgcatacactgaagaagaaactaaggccatggcagcagaaattgaggtggttgatggccctaatgatgagggtgagatgttcacccgccctgggaagttgagtgatcgttttccacagccttacccaaatgaagcagctgcaaggtttgcaaatggtggggcttatcctcctgatctaagtcttatcactaaggcccggcataacggtcaaaactatgtttttgctcttctaactggctaccgggaccctcctgcttgtgtctcgattcgggaaggtcttcactataacccttacttccctggtggagctatagcaatgcctaaaatgcttaatgatggtgctgttgagtatgaagatggtatacctgcaactgaggcacaaatgggaaaagatgttgtgtcgttcttgtcatgggctgctgagccagaaatggaagagagaaagctgatgggtttcaaatggatattcgtcttatcacttgcacttctccaagcagcttactaccgtcgcctgagatggtctgtcctgaaatctcgcaaattggtcctcgatgttgtcaactgatttcattcaaatcacactacgtgaactaatagtaagcgtttccttttgtgtactgtatgtgatggggggcacaaggaatactgatattattgcccaatgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="69682" stop="71876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69982" g_stop="70135" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70136" i_stop="70287" i_length="152">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70288" g_stop="70567" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="434" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="506" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70935" g_stop="71051" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="623" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71132" g_stop="71197" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="689" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71357" g_stop="71576" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="910" r_length="221" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E553071" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69982" e_stop="70135"/>
          <exon e_start="70288" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71051"/>
          <exon e_start="71132" e_stop="71197"/>
          <exon e_start="71357" e_stop="71576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTCGTGAGTATATGCTGTGCTGCCACATGATAATTAAAGTTCATTGGAGGCTACAGAAAACATTTCAACCTTTTGTTTATTCAAAACTAAATTTAGCATGAGTCTTCAATGAAATGGATACCCCATTTAGTTTAACGCCTTTATTTGCCTGACAGGATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTGGTAAGTCGCAATCTTCCATTTGGTCCTTCTCTTGCAGTATGATAGTCACTATATTCAACCTCTGCATTTTGAATGTTGAACTGATATTGGATCCTCATTGACAGTTGAATGTGCCATTAAATGAATTTACTGACCTCTTGGGTATTGTAATTTCTACAGATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGATTTCATTCAAATCACACTACGTGAACTAATAGTAAGCGTTTCCTTTTGTGTACTGTATGTGAT-GGGGGCACAAGGAATACTGATATTATTGCCCAATGATTTG</genome_strand>
        <mrna_strand>AGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTC........................................................................................................................................................GATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG...................................................................GCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTTGTGTCTCG....................................................................................................................................................................................................................................ATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAA................................................................................ATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTG...............................................................................................................................................................ATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGATTTCATTCAAATCACACTACGTGAACTAATAGTAAGCGTTTCCTTTTGTGTACTGTATGTGATGGGGGGCACAAGGAATACTGATATTATTGCCCAATGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725521" ref_strand="+" ref_description="SGN-E725521 [LA03DF03]">
      <seq>gtctttcagagcatttgcagtgggtggtgctggaatctctgggctacttagctttgcaggagttgcttattctgatgaggccgaacatggcttagagtgtccgagctatccttggcctcacgaaggcattctcagctcttatgaccatgcttcgatacgtggaggtcatcaggtttaccagcaagtgtgtgcgtcctgccactcaatgtcgctaatttcctaccgcgatcttgttggtgttgcatacactgaagaagaaactaaggccatggcagcagaaattgaggtggttgatggccctaatgatgagggtgagatgttcatccgccctgggaagttgagtgatcgttttccacagccttacccaaatgaagcagctgcaaggtttgcaaatggtggggcttatcctcctgatctaagtcttatcactaaggcccggcataacggtcaaactatgnttgtgctcttctaactgcctaccggacctcctgctggtgtctcgattcgggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="69683" stop="71008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69983" g_stop="70135" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70136" i_stop="70287" i_length="152">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70288" g_stop="70567" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="433" r_length="280" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="502" r_length="69" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70935" g_stop="70944" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="512" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E725521" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69983" e_stop="70135"/>
          <exon e_start="70288" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="70944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTCGTGAGTATATGCTGTGCTGCCACATGATAATTAAAGTTCATTGGAGGCTACAGAAAACATTTCAACCTTTTGTTTATTCAAAACTAAATTTAGCATGAGTCTTCAATGAAATGGATACCCCATTTAGTTTAACGCCTTTATTTGCCTGACAGGATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAG</genome_strand>
        <mrna_strand>GTCTTTCAGAGCATTTGCAGTGGGTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTC........................................................................................................................................................GATACGTGGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGCGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCATCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG...................................................................GCCCGGCATAACGGTC-AAACTATGNTTGTGCTCTTCTAACTGCCTACC-GGA-CCTCCTGCTGGTGTCTCG....................................................................................................................................................................................................................................ATTCGGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340342" ref_strand="+" ref_description="SGN-E340342 [cTOF-2-O18]">
      <seq>ctcaatgtcgctaatttcctaccgtgatcttgttggtgttgcatacactgaagaagaaactaaggccatggcagcagaaattgaggtggttgatggccctaatgatgagggtgagatgttcacccgccctgggaaagtgagtgatcgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="70036" stop="70786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70336" g_stop="70486" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E340342" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>151</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70336" e_stop="70486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTT</genome_strand>
        <mrna_strand>CTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAAGTGAGTGATCGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369272" ref_strand="+" ref_description="SGN-E369272 [TUS-25-K10](-)">
      <seq>gccctgggaagttgagtgatcgttttccacagccttacccaaatgaagcagctgcaaggtttgcaaatggtggggcttatcctcctgatctaagtcttatcactaaggcccggcataacggtcaaaactatgtttttgctcttctaactggctaccgggaccctcctgcttgtgtctcgattcgggaaggtcttcactataacccttacttccctggtggagctatagcaatgcctaaaatgcttaatgatggtgctgttgagtatgaagatggtatacctgcaactgaggcacaaatgggaaaagatgttgtgtcgttcttgtcatgggctgctgagccagaaatggaagagagaaagctgatgggtttcaaatggatattcgtcttatcacttgcacttctccaagcagcttactaccgtcgcctgagatggtctgtcctgaaatctcgcaaattggtcctcgatgttgtcaactgatttcattcaaatcacactacgtgaactaatagtaagcgtttccttttgtgtactgtatgtgatgggggcacaaggaatactgatattattgcccaatgatttgaattatcagtgttataatatacaatgtagactctagacaatagatcagccacttggagctattcttttgaggggaaaataaatagccgatgtactatttacagtattgtctataataaatctttgttataggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="70161" stop="72010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70461" g_stop="70567" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="179" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70935" g_stop="71051" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="296" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71132" g_stop="71197" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="362" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71357" g_stop="71717" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="723" r_length="361" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E369272" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70461" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71051"/>
          <exon e_start="71132" e_stop="71197"/>
          <exon e_start="71357" e_stop="71717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTGGTAAGTCGCAATCTTCCATTTGGTCCTTCTCTTGCAGTATGATAGTCACTATATTCAACCTCTGCATTTTGAATGTTGAACTGATATTGGATCCTCATTGACAGTTGAATGTGCCATTAAATGAATTTACTGACCTCTTGGGTATTGTAATTTCTACAGATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGATTTCATTCAAATCACACTACGTGAACTAATAGTAAGCGTTTCCTTTTGTGTACTGTATGTGATGGGGGCACAAGGAATACTGATATTATTGCCCAATGATTTGAATTATCAGTGTTATAATATACAATGTAGACTCTAGACAATAGATCAGCCACTTGGAGCTATTCTTTTGAGGGGAAAATAAATAGCCGATGTACTATTTACAGTATTGTCTATAATAAATCTTTGTTATAGGAATTCCAAG</genome_strand>
        <mrna_strand>GCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG...................................................................GCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTTGTGTCTCG....................................................................................................................................................................................................................................ATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAA................................................................................ATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTG...............................................................................................................................................................ATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGATTTCATTCAAATCACACTACGTGAACTAATAGTAAGCGTTTCCTTTTGTGTACTGTATGTGATGGGGGCACAAGGAATACTGATATTATTGCCCAATGATTTGAATTATCAGTGTTATAATATACAATGTAGACTCTAGACAATAGATCAGCCACTTGGAGCTATTCTTTTGAGGGGAAAATAAATAGCCGATGTACTATTTACAGTATTGTCTATAATAAATCTTTGTTATAGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213490" ref_strand="+" ref_description="SGN-E213490 [cLEC-71-J10]">
      <seq>aaatggtggggcttatcctcctgatctaagtcttatcactaaggcccggcataacggtcaaaactatgtttttgctcttctaactggctaccgggaccctcctgcttgtgtctcgattcgggaaggtcttcactataacccttacttccctggtggagctatagcaatgcctaaaatgcttaatgatggtgctgttgagtatgaagatggtatacctgcaactgaggcacaaatgggaaaagatgttgtgtcgttcttgtcatgggctgctgagccagaaatggaagagagaaagctgatgggtttcaaatggatattcgtcttatcacttgcacttctccaagcagcttactaccgtcgcctgagatggtctgtcctgaaatctcgcaaattggtcctcgatgttgtcaactgatttcattcaaatcacactacgtgaactaatagtaagcgtttccttttgtgtactgtatgtgatgggggcacaaggaatactgatattattgcccaatgatttgaattatcagtgttataatatacaatgtagactctagacaatagatcagccacttggagctattcttttgaggggaaaataaatagccgatgtactatttacagtattgtctataataaatctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="70225" stop="72001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70525" g_stop="70567" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="115" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70935" g_stop="71051" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="232" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71132" g_stop="71197" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="298" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71357" g_stop="71701" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="643" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E213490" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70525" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71051"/>
          <exon e_start="71132" e_stop="71197"/>
          <exon e_start="71357" e_stop="71701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTGGTAAGTCGCAATCTTCCATTTGGTCCTTCTCTTGCAGTATGATAGTCACTATATTCAACCTCTGCATTTTGAATGTTGAACTGATATTGGATCCTCATTGACAGTTGAATGTGCCATTAAATGAATTTACTGACCTCTTGGGTATTGTAATTTCTACAGATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGATTTCATTCAAATCACACTACGTGAACTAATAGTAAGCGTTTCCTTTTGTGTACTGTATGTGATGGGGGCACAAGGAATACTGATATTATTGCCCAATGATTTGAATTATCAGTGTTATAATATACAATGTAGACTCTAGACAATAGATCAGCCACTTGGAGCTATTCTTTTGAGGGGAAAATAAATAGCCGATGTACTATTTACAGTATTGTCTATAATAAATCTTTG</genome_strand>
        <mrna_strand>AAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG...................................................................GCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTTGTGTCTCG....................................................................................................................................................................................................................................ATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAA................................................................................ATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTG...............................................................................................................................................................ATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGATTTCATTCAAATCACACTACGTGAACTAATAGTAAGCGTTTCCTTTTGTGTACTGTATGTGATGGGGGCACAAGGAATACTGATATTATTGCCCAATGATTTGAATTATCAGTGTTATAATATACAATGTAGACTCTAGACAATAGATCAGCCACTTGGAGCTATTCTTTTGAGGGGAAAATAAATAGCCGATGTACTATTTACAGTATTGTCTATAATAAATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292276" ref_strand="+" ref_description="SGN-E292276 [cLET-1-C11](-)">
      <seq>tggaggagcctatcctcctgatctaagtctaattactaaggctcgtcataatggtcaaaactatgtttttgctcttctaactggctaccgcgaccctcctgctggtgttttgattcgagaaggacttcactataatccttacttccctggtggagctatagcaatgcctaaaatgcttaatgatggagccgttgagtatgaggacggcatccctgcgactgaggcacagatgggaaaagatgttgtctcattcttgtcatgggctgctgagccggagatggaagagagaaagctgatgggtttcaaatggatatttgttttatctctcgcacttctacaagcagcttactaccgtcgtttgagatggtctgtcctcaaatctcgtaagttggtccttgatgttgtcaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="70228" stop="71773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70528" g_stop="70567" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="112" r_length="72" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70935" g_stop="71051" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="229" r_length="117" r_score="0.906"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71132" g_stop="71197" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="295" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159">
            <donor d_prob="0.960" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71357" g_stop="71473" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="412" r_length="117" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E292276" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70528" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71051"/>
          <exon e_start="71132" e_stop="71197"/>
          <exon e_start="71357" e_stop="71473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTGGTAAGTCGCAATCTTCCATTTGGTCCTTCTCTTGCAGTATGATAGTCACTATATTCAACCTCTGCATTTTGAATGTTGAACTGATATTGGATCCTCATTGACAGTTGAATGTGCCATTAAATGAATTTACTGACCTCTTGGGTATTGTAATTTCTACAGATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGA</genome_strand>
        <mrna_strand>TGGAGGAGCCTATCCTCCTGATCTAAGTCTAATTACTAAG...................................................................GCTCGTCATAATGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGCGACCCTCCTGCTGGTGTTTTG....................................................................................................................................................................................................................................ATTCGAGAAGGACTTCACTATAATCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGAGCCGTTGAGTATGAGGACGGCATCCCTGCGACTGAGGCACAG................................................................................ATGGGAAAAGATGTTGTCTCATTCTTGTCATGGGCTGCTGAGCCGGAGATGGAAGAGAGAAAGCTG...............................................................................................................................................................ATGGGTTTCAAATGGATATTTGTTTTATCTCTCGCACTTCTACAAGCAGCTTACTACCGTCGTTTGAGATGGTCTGTCCTCAAATCTCGTAAGTTGGTCCTTGATGTTGTCAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372598" ref_strand="+" ref_description="SGN-E372598 [TUS-31-K7](-)">
      <seq>tggaggagcctatcctcctgatctaagtctaattactaaggctcgtcataatggtcaaaactatgtttttgctcttctaactggctaccgcgaccctcctgctggtgttttgattcgagaaggacttcactataatccttacttccctggtggagctatagcaatgcctaaaatgcttaatgatggagccgttgagtatgaggacggcatccctgcgactgaggcacagatgggaaaagatgttgtctcattcttgtcatgggctgctgagccggagatggaagagagaaagctgatgggtttcaaatggatatttgttttatctctcgcacttctacaagcagcttactaccgtcgtttgagatggtctgtcctcaaatctcgtaagttggtccttgatgttgtcaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="70228" stop="71773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70528" g_stop="70567" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="112" r_length="72" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70935" g_stop="71051" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="229" r_length="117" r_score="0.906"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71132" g_stop="71197" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="295" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159">
            <donor d_prob="0.960" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71357" g_stop="71473" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="412" r_length="117" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E372598" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70528" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71051"/>
          <exon e_start="71132" e_stop="71197"/>
          <exon e_start="71357" e_stop="71473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTGGTAAGTCGCAATCTTCCATTTGGTCCTTCTCTTGCAGTATGATAGTCACTATATTCAACCTCTGCATTTTGAATGTTGAACTGATATTGGATCCTCATTGACAGTTGAATGTGCCATTAAATGAATTTACTGACCTCTTGGGTATTGTAATTTCTACAGATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGA</genome_strand>
        <mrna_strand>TGGAGGAGCCTATCCTCCTGATCTAAGTCTAATTACTAAG...................................................................GCTCGTCATAATGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGCGACCCTCCTGCTGGTGTTTTG....................................................................................................................................................................................................................................ATTCGAGAAGGACTTCACTATAATCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGAGCCGTTGAGTATGAGGACGGCATCCCTGCGACTGAGGCACAG................................................................................ATGGGAAAAGATGTTGTCTCATTCTTGTCATGGGCTGCTGAGCCGGAGATGGAAGAGAGAAAGCTG...............................................................................................................................................................ATGGGTTTCAAATGGATATTTGTTTTATCTCTCGCACTTCTACAAGCAGCTTACTACCGTCGTTTGAGATGGTCTGTCCTCAAATCTCGTAAGTTGGTCCTTGATGTTGTCAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290049" ref_strand="+" ref_description="SGN-E290049 [cLET-5-A18]">
      <seq>ggaggagcctatcctcctgatctaagtctaattactaaggctcgtcataatggtcaaaactatgtttttgctcttctaactggctaccgcgaccctcctgctggtgttttgattcgagaaggacttcactataatccttacttccctggtggagctatagcaatgcctaaaatgcttaatgatggagccgttgagtatgaggacggcatccctgcgactgaggcacagatgggaaaagatgttgtctcattcttgtcatgggctgctgagccggagatggaagagagaaagctgatgggtttcaaatggatatttgttttatctctcgcacttctacaagcagcttactaccgtcgtttgagatggtctgtcctcaaatctcgtaagttggtccttgatgttgtcaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="70229" stop="71774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70529" g_stop="70567" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="111" r_length="72" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70935" g_stop="71051" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="228" r_length="117" r_score="0.906"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71132" g_stop="71197" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="294" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159">
            <donor d_prob="0.960" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71357" g_stop="71474" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="412" r_length="118" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E290049" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70529" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71051"/>
          <exon e_start="71132" e_stop="71197"/>
          <exon e_start="71357" e_stop="71474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTGGTAAGTCGCAATCTTCCATTTGGTCCTTCTCTTGCAGTATGATAGTCACTATATTCAACCTCTGCATTTTGAATGTTGAACTGATATTGGATCCTCATTGACAGTTGAATGTGCCATTAAATGAATTTACTGACCTCTTGGGTATTGTAATTTCTACAGATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGAT</genome_strand>
        <mrna_strand>GGAGGAGCCTATCCTCCTGATCTAAGTCTAATTACTAAG...................................................................GCTCGTCATAATGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGCGACCCTCCTGCTGGTGTTTTG....................................................................................................................................................................................................................................ATTCGAGAAGGACTTCACTATAATCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGAGCCGTTGAGTATGAGGACGGCATCCCTGCGACTGAGGCACAG................................................................................ATGGGAAAAGATGTTGTCTCATTCTTGTCATGGGCTGCTGAGCCGGAGATGGAAGAGAGAAAGCTG...............................................................................................................................................................ATGGGTTTCAAATGGATATTTGTTTTATCTCTCGCACTTCTACAAGCAGCTTACTACCGTCGTTTGAGATGGTCTGTCCTCAAATCTCGTAAGTTGGTCCTTGATGTTGTCAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292275" ref_strand="+" ref_description="SGN-E292275 [cLET-1-C11]">
      <seq>ggaggagcctatcctcctgatctaagtctaattactaaggctcgtcataatggtcaaaactatgtttttgctcttctaactggctaccgcgaccctcctgctggtgttttgattcgagaaggacttcactataatccttacttccctggtggagctatagcaatgcctaaaatgcttaatgatggagccgttgagtatgaggacggcatccctgcgactgaggcacagatgggaaaagatgttgtctcattcttgtcatgggctgctgagccggagatggaagagagaaagctgatgggtttcaaatggatatttgttttatctctcgcacttctacaagcagcttactaccgtcgtttgagatggtctgtcctcaaatctcgtaagttggtccttgatgttgtcaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="70229" stop="71774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70529" g_stop="70567" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="111" r_length="72" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70935" g_stop="71051" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="228" r_length="117" r_score="0.906"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71132" g_stop="71197" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="294" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159">
            <donor d_prob="0.960" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71357" g_stop="71474" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="412" r_length="118" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E292275" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70529" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71051"/>
          <exon e_start="71132" e_stop="71197"/>
          <exon e_start="71357" e_stop="71474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTGGTAAGTCGCAATCTTCCATTTGGTCCTTCTCTTGCAGTATGATAGTCACTATATTCAACCTCTGCATTTTGAATGTTGAACTGATATTGGATCCTCATTGACAGTTGAATGTGCCATTAAATGAATTTACTGACCTCTTGGGTATTGTAATTTCTACAGATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGAT</genome_strand>
        <mrna_strand>GGAGGAGCCTATCCTCCTGATCTAAGTCTAATTACTAAG...................................................................GCTCGTCATAATGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGCGACCCTCCTGCTGGTGTTTTG....................................................................................................................................................................................................................................ATTCGAGAAGGACTTCACTATAATCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGAGCCGTTGAGTATGAGGACGGCATCCCTGCGACTGAGGCACAG................................................................................ATGGGAAAAGATGTTGTCTCATTCTTGTCATGGGCTGCTGAGCCGGAGATGGAAGAGAGAAAGCTG...............................................................................................................................................................ATGGGTTTCAAATGGATATTTGTTTTATCTCTCGCACTTCTACAAGCAGCTTACTACCGTCGTTTGAGATGGTCTGTCCTCAAATCTCGTAAGTTGGTCCTTGATGTTGTCAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295184" ref_strand="+" ref_description="SGN-E295184 [cLET-20-N3]">
      <seq>ggaggagcctatcctcctgatctaagtctaattactaaggctcgtcataatggtcaaaactatgtttttgctcttctaactggctaccgcgaccctcctgctggtgttttgattcgagaaggacttcactataatccttacttccctggtggagctatagcaatgcctaaaatgcttaatgatggagccgttgagtatgaggacggcatccctgcgactgaggcacagatgggaaaagatgttgtctcattcttgtcatgggctgctgagccggagatggaagagagaaagctgatgggtttcaaatggatatttgttttatctctcgcacttctacaagcagcttactaccgtcgtttgagatggtctgtcctcaaatctcgtaagttggtccttgatgttgtcaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="70229" stop="71774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70529" g_stop="70567" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="111" r_length="72" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70935" g_stop="71051" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="228" r_length="117" r_score="0.906"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71132" g_stop="71197" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="294" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159">
            <donor d_prob="0.960" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71357" g_stop="71474" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="412" r_length="118" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E295184" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70529" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71051"/>
          <exon e_start="71132" e_stop="71197"/>
          <exon e_start="71357" e_stop="71474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTGGTAAGTCGCAATCTTCCATTTGGTCCTTCTCTTGCAGTATGATAGTCACTATATTCAACCTCTGCATTTTGAATGTTGAACTGATATTGGATCCTCATTGACAGTTGAATGTGCCATTAAATGAATTTACTGACCTCTTGGGTATTGTAATTTCTACAGATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGAT</genome_strand>
        <mrna_strand>GGAGGAGCCTATCCTCCTGATCTAAGTCTAATTACTAAG...................................................................GCTCGTCATAATGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGCGACCCTCCTGCTGGTGTTTTG....................................................................................................................................................................................................................................ATTCGAGAAGGACTTCACTATAATCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGAGCCGTTGAGTATGAGGACGGCATCCCTGCGACTGAGGCACAG................................................................................ATGGGAAAAGATGTTGTCTCATTCTTGTCATGGGCTGCTGAGCCGGAGATGGAAGAGAGAAAGCTG...............................................................................................................................................................ATGGGTTTCAAATGGATATTTGTTTTATCTCTCGCACTTCTACAAGCAGCTTACTACCGTCGTTTGAGATGGTCTGTCCTCAAATCTCGTAAGTTGGTCCTTGATGTTGTCAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372599" ref_strand="+" ref_description="SGN-E372599 [TUS-31-K7]">
      <seq>ggaggagcctatcctcctgatctaagtctaattactaaggctcgtcataatggtcaaaactatgtttttgctcttctaactggctaccgcgaccctcctgctggtgttttgattcgagaaggacttcactataatccttacttccctggtggagctatagcaatgcctaaaatgcttaatgatggagccgttgagtatgaggacggcatccctgcgactgaggcacagatgggaaaagatgttgtctcattcttgtcatgggctgctgagccggagatggaagagagaaagctgatgggtttcaaatggatatttgttttatctctcgcacttctacaagcagcttactaccgtcgtttgagatggtctgtcctcaaatctcgtaagttggtccttgatgttgtcaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="70229" stop="71774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70529" g_stop="70567" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70635" g_stop="70706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="111" r_length="72" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70935" g_stop="71051" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="228" r_length="117" r_score="0.906"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71132" g_stop="71197" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="294" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159">
            <donor d_prob="0.960" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71357" g_stop="71474" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="412" r_length="118" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E372599" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70529" e_stop="70567"/>
          <exon e_start="70635" e_stop="70706"/>
          <exon e_start="70935" e_stop="71051"/>
          <exon e_start="71132" e_stop="71197"/>
          <exon e_start="71357" e_stop="71474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAGGTATTGCCTTGGTCCTCTTCTTTCAGCTATATTTATCTGCATTGCCTGATTTTCTTTCTTCTTTCAGGCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCGGTAATTTCTGCCCCTCGGACTTCTTTTGGTTTGTGACCATCTTTTGTTTGTTTAGAACAGGGGAAGCATCAAACAGAAAAATTGTGTACATCTGAAGATGTAGTTGTGAAGAGATATGCTCCATTTTTAATTGGTTGTTACCTAAGAGTAACACTGTACTAGCTTGTTGTTATCACAATTTTATATTGGAAGTTGAGAACCATAATAACTTCTCAACTCTTATTGTAGATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTGGTAAGTCGCAATCTTCCATTTGGTCCTTCTCTTGCAGTATGATAGTCACTATATTCAACCTCTGCATTTTGAATGTTGAACTGATATTGGATCCTCATTGACAGTTGAATGTGCCATTAAATGAATTTACTGACCTCTTGGGTATTGTAATTTCTACAGATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGAT</genome_strand>
        <mrna_strand>GGAGGAGCCTATCCTCCTGATCTAAGTCTAATTACTAAG...................................................................GCTCGTCATAATGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGCGACCCTCCTGCTGGTGTTTTG....................................................................................................................................................................................................................................ATTCGAGAAGGACTTCACTATAATCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGAGCCGTTGAGTATGAGGACGGCATCCCTGCGACTGAGGCACAG................................................................................ATGGGAAAAGATGTTGTCTCATTCTTGTCATGGGCTGCTGAGCCGGAGATGGAAGAGAGAAAGCTG...............................................................................................................................................................ATGGGTTTCAAATGGATATTTGTTTTATCTCTCGCACTTCTACAAGCAGCTTACTACCGTCGTTTGAGATGGTCTGTCCTCAAATCTCGTAAGTTGGTCCTTGATGTTGTCAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732004" ref_strand="+" ref_description="SGN-E732004 [LB01AB01]">
      <seq>ggtaaggtcttcactataacccttacttccctggtggagctatagcaatgcctaaaatgcttaatgatggtgctgttgagtatgaagatggtatacctgcaactgaggcacaaatgggaaaagatgttgtgtcgttcttgtcatgggctgctgagccagaaatggaagagagaaagctgatgggtttcaaatggatatttgtcttatcacttgcacttctccaagcagcttactaccgtcgcctgagatggtctgtcctgaaatctcgcaaattggtcctcgatgttgtcaactgatttcattcaaatcacactacgtgaactaatagtaagcgtttccttttgtgtactgtatgtgatgggggcacaaggaatactgatattattgcccaatgatttgaattatctgtgttataatatacaatgtagactctagacaatagatcagccacttggagctattcttttgaggggaaaataaatagccgatgtactatttacagtatcgtctataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaantttcgggggggggggccggaacccatttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0038P06-ET5ts/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0038P06.1" temp_strand="+" temp_description="C12SLe0038P06.1  AC216402.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0038P06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="70640" stop="86437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70939" g_stop="71051" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71132" g_stop="71197" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="179" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71357" g_stop="71694" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="517" r_length="338" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71695" i_stop="75129" i_length="3435">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75130" g_stop="75210" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="598" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0038P06.1" gen_strand="+" ref_id="SGN-E732004" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0038P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70939" e_stop="71051"/>
          <exon e_start="71132" e_stop="71197"/>
          <exon e_start="71357" e_stop="71694"/>
          <exon e_start="75130" e_stop="75210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAAGTAATATGTCTTGCTCTCTTTCTGCTTTATGTGTTGATCCATTATAAAGAGATAGAAGTAATTTTTCTCTAACTGTGCAGATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTGGTAAGTCGCAATCTTCCATTTGGTCCTTCTCTTGCAGTATGATAGTCACTATATTCAACCTCTGCATTTTGAATGTTGAACTGATATTGGATCCTCATTGACAGTTGAATGTGCCATTAAATGAATTTACTGACCTCTTGGGTATTGTAATTTCTACAGATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGATTTCATTCAAATCACACTACGTGAACTAATAGTAAGCGTTTCCTTTTGTGTACTGTATGTGATGGGGGCACAAGGAATACTGATATTATTGCCCAATGATTTGAATTATCAGTGTTATAATATACAATGTAGACTCTAGACAATAGATCAGCCACTTGGAGCTATTCTTTTGAGGGGAAAATAAATAGCCGATGTACTATTTACAGTATTGTCTATAATAAATCTTTGTTATAGGAATTCCAAGTGCGAGTGGTATCACCCCCACCCCTCCTTTTTCTAAAGTCACCAGGAGATGCGACTTTTGCTGTTTTGGATGGTGGAATAACTTATCCCGGGAGATAACTTGTTCCCACCAACCAAATGACCTAAAGTTTTAGGCTATTGAAAATTACAAGTCTTTTTCACAAGGACTTTTAACTATAAAATGATGATTTCTGTTTGTCATGAATATAATTTCTCCACACTAGTTCTCTCAAAGTTTTAGATTTGATGCTCAAATTCCTTAACAAATCACCTTGTGTTATACTATCTAATTCTAATGTAGCTGGAGGTACACAATGCAGGATCCTCAATTTTTTACCAATGGTATTAGAATGTTGAGTAATATATGCTCAGATATTCTTTCACCTATCTGTTTTTCCATTTCTTATCCTTATTCCATTTCACATTAATTAGCTAATAGAGTGGATAGAGTTACCTTGCTGGAGGAGGTAGCGCAGGTATCTCGTGGAATAAATAGACTAACATAACTTCATTTGATTTCTTGAAATTTTGATAAGTACATGTAAGACGTTACACTGAAACACCAAATAATTTAAATCTCTTGCTTAGTAACAATTGCACTATAATATAGATGATGATTTCAAAGAGGCACACATATAACGTAGTAAATTGACCTATGGGATACGTGGATTGCGAACGCTGACTAACCTAACATCATCGATGACAGGACCACACAAGGAGCCAGAGTTGTCACTCTTCATATGATAATAGGAGCTCAAGAACCTAACCCTAGTGCGTTGAGACATTGCTGTAAACCTAAGCTTAGCACGTTTGAACCCACCTTTGCCTTTAGACACATATTGAAACTGTAATGCAACATTGCCAGCAAATGCCTCAACAACCATAGACCCTTCACAAGCATTGTTAGCATCACCAACTGAGAATATGAGATCATAAATCCTTCCGGTTTTAGTGATCACTTGTTGTGCTATTGCACTTTCTCGTCCCGCGACTAGCTCGATGGCTCGCTTGCCCTCGGGAACCGTGAAGTGATCGGCGTCGACGTATTTTACGGCCTTGAGAGACTCAACTATCCATCCAGGCAATGGACAATGATCATCTTCTATGTTGGGAGGAATTAGAACACCCCAACTTGTGTTAGGGAAGATGTATGGACCCTCCTCAAAGTTTCCATTTTTCAACATGTTGTCTGCACACATTTATGTAACTAGAGTTTAAATTCTGACGTAAGGAAAATATTTACACAATCTGATCATGTAAGAGGTAGTAGTAGTTATGGGCAACTTTATTTAATAGGTATTAAAAGGATTTAATAACAAGTGCATGTGCATATTATGGTACTAGCTAGGTTTCGTAGAAATAAAGAGTAGTATCTTTCTAAATTTGAAAATAATTTAATTTAAACTTTCTATATATCCATTGAATGATTACCATCGATATAAATGTTATAACAGATTTAGAACCACAAGTCTCAAAAGACCTTGAACAAGTTGGACACGATTACAAAGTGTGAACAAATTTATGTTCGTATTTTTGGGGAGTCTAAATTTCTAATTTTGATCATAAATTTAGATATAAAATTTTGAAACAAAAAACACATATTTGGGAGTATAAGTTAGCATAAGTAACATTCAAAATATTAAAAGTAGTACTCCCTCTATCCTAGTTTATATGATTGACTCACTTTAGTCTCAAAAGAAATAATACATTTCAATATTAATTACATAATAATTTAACTTTAAAATATCTATTTTATCTTAATGAAATGATTTATATCCACACAAACACGTCACTTATTTTAGACCACTAGTTTCAAAAGTCTTCCTTTCTTTTTTTAAACTCCATTTCAAGTCAAACTAACTCATATAAAATGAGACAGATGAAGTATATGAAAAAAATTATGGTTTATGAAAAAAGTTGTTTGCTTCTTTAAATTTGAATGATATCACATAAATTAAAAGACGCACAAATAAAATCGACGATACGGTGAATGTGAGGAGTTATACCTTTTGGTCTATGTGTTGTTTTCAAAGCCTTGAGAGCAACAAAATCAATAAGTGGTCCACAAGCAGGGTCCTTCTCATGAGCAATAGGATTATGTAACACAATATCAATCTCATTAGCCTCAGCCAAAAAACCCCATGAATAAGTATCCCATCCATCACTACTATACATTGTTTGTAATGGCAACATACCCCAATCTTTTGGTTCACTATTAGGTGAAACTGACACATTAAGTCTCTCTTCTTGAGCACAAGTCCTAGCAAACACAAAAGATAGGGAGTAAAATGTTCCTTTTGTGACACTTGTGACTTTGGTTTTGAGTGATGCACCTTCACCTAGCCTAACAGCATAATCCCCTTGTGGTACTGGAAGTAACATGTCACCTTGCATTTGTCCTGATTTTATGTACTCTACATAACCTGAGAGTTCCCAATGAGGTATAGCATGAGGATCTATTACTCTTGTATTCTTCATTTGTGATGATTTTGGACCTTGCTCAAAGTTACCATTTGGTAATAATCCTGGTATGAGTTAGAAAACCGCAGAGTGAGGGTAGTGACAGAATCAAAATTTTCATTGAAAAATTCACAATATAACAAAATGAACATACGAAGAAGTCGAATACAGCTGAACCCTACATCCTTACTAGTTCCGCCCCAGAAGTGAGGATCCATCATCACTCTTGTGTGTATGCATTTGGTAACCAAAAAAAAAGTGTTTATAATATTTTCATTATTTGTCCTTTTTTTTATATGAAAATACCTTCAAATTTATATTATTGGTACATAAATTTAAGGATATTTCAATCATTTTTATAAAAAAAATGCTTATAAATATATTTATACCGAAAACACTAACTAGTTAATCAATCTCAATATTTCTATATCACATAATTATTTATAAAATTAATTTTAATTATCGATATTTATCAACTATTTTTAATCAGCTGCCTTGTACTAAAACTAAAAACTGAAGTAATTGTGAGTTAGGAGCATTGAATGACATTTGCGAACTTGGTGCCTAAAGTTTGCTGACAACTAATAATAACTCATGCAAAATGGTACTCTAACAAGGAGCAAGTTAATTTATTGTCACAACTCCCAAATACTTTTAAATATGTCTACATTTTTTATAATAGTAAGAGCTTCACCTTAAACATTTAAAATGAAAAATCTAAATTTAAAATTTTCCCACAACCTTTTAAAAATAAATTAAAGAGGAAAAAGACCTAGCTAGCCTTGTGAAAATGAATAGAAAAAATAGTAAGTAATATTTTCATACGGAAAATATAGAATTTTTTTTACTATTTTAATGAGTTTTCGTTTTCATTTCCTATCATATATTTTCTCAGTAACCTGATTCGGTGGAAAATAAATGAAAAAAATCACATTCCGTAACATAAATTTTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GGTAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAA................................................................................ATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTG...............................................................................................................................................................ATGGGTTTCAAATGGATATTTGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGATTTCATTCAAATCACACTACGTGAACTAATAGTAAGCGTTTCCTTTTGTGTACTGTATGTGATGGGGGCACAAGGAATACTGATATTATTGCCCAATGATTTGAATTATCTGTGTTATAATATACAATGTAGACTCTAGACAATAGATCAGCCACTTGGAGCTATTCTTTTGAGGGGAAAATAAATAGCCGATGTACTATTTACAGTATCGTCTATAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANTTTCGGGGGGGGGGGCCGGAACCCATTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>101</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5797" PGL_stop="6191"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5797" e_stop="6191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="5797" e_stop="6191" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5797" stop="6191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5801" stop="6163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAGTAAAACTGTTGGATCACAAGTCCAAGAACTTCAACTTATTCTCCATGATCTCATTGCTGAAGATATGGTAGTAAATGAAGTTTTTCAAGTGACTGCAATGATCAAGAAGTTCCCTGCTTCGTGGAACGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGGCTCAAGATTAAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCACTGGAGTTAATATTGTTGAAGAAGCTCCAACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGGTCTTCTAA</gDNA_template>
            <first_frame> D  S  K  T  V  G  S  Q  V  Q  E  L  Q  L  I  L  H  D  L  I  A  E  D  M  V  V  N  E  V  F  Q  V  T  A  M  I  K  K  F  P  A  S  W  N  D  F  K  N  Y  L  K  H  K  R  K  E  M  K  L  E  D  L  V  I  R  L  K  I  K  E  D  N  R  N  A  E  K  K  S  R  K  S  S  T  I  T  G  V  N  I  V  E  E  A  P  T  K  D  K  K  R  K  K  S  N  G  Q  K  S  E  Q  A  K  K  K  F  K  G  N  C  Y  N  C  G  K  A  G  H  R  S  S   </first_frame>
            <second_frame>  I  V  K  L  L  D  H  K  S  K  N  F  N  L  F  S  M  I  S  L  L  K  I  W  *  *  M  K  F  F  K  *  L  Q  *  S  R  S  S  L  L  R  G  T  I  S  R  I  I  *  S  T  S  V  K  K  *  S  L  K  I  L  *  F  G  S  R  L  R  K  I  T  E  M  P  K  R  S  R  V  R  V  Q  Q  S  L  E  L  I  L  L  K  K  L  Q  P  K  T  K  R  E  R  S  P  T  G  R  S  Q  N  R  P  R  R  N  S  K  A  T  V  I  I  V  A  R  L  V  I  G  L  L  </second_frame>
            <third_frame>   *  *  N  C  W  I  T  S  P  R  T  S  T  Y  S  P  *  S  H  C  *  R  Y  G  S  K  *  S  F  S  S  D  C  N  D  Q  E  V  P  C  F  V  E  R  F  Q  E  L  S  K  A  Q  A  *  R  N  E  A  *  R  S  C  D  S  A  Q  D  *  G  R  *  Q  K  C  R  K  E  V  A  *  E  F  N  N  H  W  S  *  Y  C  *  R  S  S  N  Q  R  Q  K  E  K  E  V  Q  R  A  E  V  R  T  G  Q  E  E  I  Q  R  Q  L  L  *  L  W  Q  G  W  S  *  V  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5797" stop="6189"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKTVGSQVQELQLILHDLIAEDMVVNEVFQVTAMIKKFPASWNDFKNYLKHKRKEMKLEDLVIRLKIKEDNRNAEKKSRKSSTITGVNIVEEAPTKDKKRKKSNGQKSEQAKKKFKGNCYNCGKAGHRSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="9985" PGL_stop="10161"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9985" e_stop="10161"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="9985" e_stop="10161" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9985" stop="10161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  Y  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  D  H  Q  T  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   I  S  P  T  I  Q  C  F  K  W  S  H  I  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0038P06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="11466" PGL_stop="14176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11466" e_stop="14176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="11466" e_stop="14176" e_length="2711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11466" stop="12178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11466" stop="12061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11466" stop="11990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11537" stop="12216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11537" stop="11895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11986" stop="12644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12055" stop="12816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12055" stop="12715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12665" stop="13223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12669" stop="13432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12749" stop="13538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12751" stop="13284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12825" stop="13522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13386" stop="14105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13389" stop="14052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13744" stop="14176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCTTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCCTCCTTATAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTTCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACCACAATTTCGTAATGTCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTATTCAGTTGTCTGTAGTCTATGAACATCCGAAAACTCCCATCCTTCTTCTTCACAAAAAAAACCGGGGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCGACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACGAACTACTGAAACCGACTCAATCGCAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCTTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAATGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCGACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGAAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTCCCCCTACCATGTTGTGATGTGGTGGCCCCATTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCCCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCAGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACCTCCCATTCGAAACCTTTTTGATGTTGATGTCGTAGTGAAGTAGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATTTGCTCTTGGGGACTAAAACATAATTGAGTGGCATATCTGGATAGTGCGTGAAACCTAGCCTCGTAAGCATTTACCGACATCATACCTTGCTCTAGGCTCAAGAACTAATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAATTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGCTGGGGTGGCAGTTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCATGACCCCTACCACGGCCTCTTGCCGCTGCTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  V  A  S  *  P  N  K  A  L  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  L  L  I  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  S  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  H  N  F  V  M  S  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  N  S  Y  L  I  Q  L  S  V  V  Y  E  H  P  K  T  P  I  L  L  L  H  K  K  N  R  G  T  P  R  R  C  T  W  S  N  E  A  F  V  R  Q  L  L  K  L  G  L  *  L  P  *  L  Y  G  S  H  S  I  R  G  Y  R  N  G  A  C  A  R  F  K  I  D  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  F  P  H  *  R  V  C  P  R  L  G  *  C  H  H  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  S  H  T  Q  N  H  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  Y  Q  T  R  P  I  Y  L  F  D  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  K  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  E  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  P  P  T  M  L  *  C  G  G  P  I  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  G  T  I  F  P  N  M  S  N  P  P  T  S  I  T  F  S  G  V  K  H  R  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  S  T  I  K  L  T  S  H  S  K  P  F  *  C  *  C  R  S  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  L  L  L  G  T  K  T  *  L  S  G  I  S  G  *  C  V  K  P  S  L  V  S  I  Y  R  H  H  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  R  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  F  *  N  R  R  C  W  R  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  E  I  G  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  F  L  I  L  H  L  F  I  L  P  F  L  T  L  S  Y  Y  L  L  S  R  W  R  S  H  C  P  S  I  R  W  T  R  C  S  S  S  S  P  R  G  R  P  P  M  T  P  T  T  A  S  C  R  C  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  F  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  *  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  F  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  V  G  A  F  V  R  P  K  D  I  T  T  I  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  L  I  V  T  L  F  S  C  L  *  S  M  N  I  R  K  L  P  S  F  F  F  T  K  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  D  N  S  *  S  W  A  F  N  S  L  N  S  T  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  R  T  T  E  T  D  S  I  A  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  A  R  R  K  E  T  M  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  I  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  R  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  K  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  F  P  L  P  C  C  D  V  V  A  P  F  C  P  L  P  L  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  F  L  I  C  P  I  P  P  H  P  *  H  S  L  E  S  S  I  G  P  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  Q  T  E  *  L  P  E  P  C  P  L  V  *  V  P  L  N  S  P  P  I  R  N  L  F  D  V  D  V  V  V  K  *  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  C  S  W  G  L  K  H  N  *  V  A  Y  L  D  S  A  *  N  L  A  S  *  A  F  T  D  I  I  P  C  S  R  L  K  N  *  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  S  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  *  P  L  P  R  P  L  A  A  A  L  </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  P  P  Y  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  F  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  *  G  H  S  *  D  Q  K  T  S  P  Q  F  R  N  V  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  I  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  *  *  L  P  Y  S  V  V  C  S  L  *  T  S  E  N  S  H  P  S  S  S  Q  K  K  P  G  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  P  L  T  P  L  T  L  R  E  P  F  Y  K  G  V  *  K  W  G  V  C  P  V  Q  D  R  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  K  T  H  E  L  L  K  P  T  Q  S  Q  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  S  F  S  *  H  E  E  R  R  R  C  G  P  D  W  K  C  S  H  L  P  T  L  T  G  L  S  Q  A  W  L  M  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  P  E  S  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  L  P  N  K  T  Y  I  P  F  R  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  E  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  R  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  R  S  P  Y  H  V  V  M  W  W  P  H  F  A  H  Y  L  C  R  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  W  S  Q  A  *  A  P  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  R  L  S  N  F  P  N  P  V  L  *  C  K  Y  H  *  T  H  L  P  F  E  T  F  L  M  L  M  S  *  *  S  S  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  F  A  L  G  D  *  N  I  I  E  W  H  I  W  I  V  R  E  T  *  P  R  K  H  L  P  T  S  Y  L  A  L  G  S  R  T  N  P  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  Y  V  T  A  T  T  F  W  R  S  L  E  I  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  P  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  L  L  K  P  E  V  L  A  Q  K  T  L  E  V  P  D  L  D  Q  T  T  H  *  D  R  R  E  P  D  *  S  S  L  G  *  A  G  V  A  V  P  H  F  A  L  V  H  S  P  L  P  H  P  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  D  *  V  L  V  L  F  P  *  R  T  S  S  H  D  P  Y  H  G  L  L  P  L  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13899" stop="14174"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWRRKHWRCLTLIRQPTEIGENLIDHLWGRLGWQFLILHLFILPFLTLSYYLLSRWRSHCPSIRWTRCSSSSPRGRPPMTPTTASCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12897" stop="13151"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGGPILPITSAVLVTTITSTTTSSRITASTMTTSTSSYWGSITLSGTIFPNMSNPPTSITFSGVKHRPLGEVLTGLRWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12193" stop="12438"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSKNSRTTETDSIAGTWVVSSLRCAKKAKHPLLIIFLARRKETMRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11730" stop="11969"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSRGIRKTKRHHHNFVMSIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13698" stop="13898"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNQKIISILRFSTLEDRRFQFQELTEKFMLIICHYRPSSQTWKRAYFQWNIHAGSHSSRMLYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12806" stop="13006"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHQMPPLQTAQGKRNNGPYRSSVRSPYHVVMWWPHFAHYLCRFGDHHYLDHHVLQNNGLYHDHLYL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11662" stop="11859"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFFLFEYTNISSINTITKRSKYGLKIPFIKLMNAVGAFVRPKDITTIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="14109" PGL_stop="13556"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14109" e_stop="13556"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="14109" e_stop="13556" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14109" stop="13556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAACTGCCACCCCAGCCTACCCCAGAGATGATCAATCAGGTTCTCGCCTATCTCAGTGGGTTGTCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCGCCAACACCTCCGGTTTCAGAAGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAATTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  S  I  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  G  *  G  R  G  E  *  T  S  A  K  *  G  T  A  T  P  A  Y  P  R  D  D  Q  S  G  S  R  L  S  Q  W  V  V  *  S  R  S  G  T  S  S  V  F  C  A  N  T  S  G  F  R  S  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  G  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  I  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  E  G  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  V  H  L  I  L  G  Q  *  L  L  H  R  L  R  R  *  *  E  R  V  R  K  G  R  M  N  K  C  K  M  R  N  C  H  P  S  L  P  Q  R  *  S  I  R  F  S  P  I  S  V  G  C  L  I  K  V  R  H  L  Q  C  F  L  R  Q  H  L  R  F  Q  K  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  R  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  N  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14108" stop="13557"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVIREGEEGENEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPPVSEVQHAATMAPRMDVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHIECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="14895" PGL_stop="14183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14895" e_stop="14183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="14895" e_stop="14183" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14895" stop="14183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14865" stop="14618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCAAACGTGCCGTCGTCTTCGACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTCGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTCTTAGAATACTCTTAGTTTAGTAATTTGATTATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATAGAAGTTGATTATTGATTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTATATTGAAATGTTAAGGTCCAGATTGGTTGGTTCGCTCACACAGGAGGGTAAGTGTGGGTACCAGTCGCGGCCCGGTTTTGGGTCATGACAAGACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTGAGGATTAGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAGGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATTTTCACTCTCTTTCGTAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCACCAGCGGGACAGGGTGTGTCTGAGCCAGCCAATGGGGCTGTAG</gDNA_template>
            <first_frame> Q  Q  T  C  R  R  L  R  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  W  I  F  F  F  K  S  R  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  L  E  Y  S  *  F  S  N  L  I  I  D  V  L  V  M  M  T  S  R  F  W  G  M  I  S  F  E  L  *  K  L  I  I  D  F  Y  *  *  V  *  V  F  R  I  T  L  C  *  Y  Y  I  E  M  L  R  S  R  L  V  G  S  L  T  Q  E  G  K  C  G  Y  Q  S  R  P  G  F  G  S  *  Q  D  L  V  S  E  H  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  L  V  G  G  R  L  Y  F  S  L  R  G  Y  R  T  L  G  K  F  H  S  F  F  L  S  C  Y  Y  L  N  P  I  G  I  *  V  I  Q  I  G  I  *  P  F  S  L  S  F  V  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  S  T  S  G  T  G  C  V  *  A  S  Q  W  G  C   </first_frame>
            <second_frame>  S  K  R  A  V  V  F  D  S  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  S  *  N  T  L  S  L  V  I  *  L  *  M  F  L  *  *  *  L  P  D  F  G  E  *  *  V  L  S  Y  R  S  *  L  L  I  F  I  N  E  F  K  S  S  A  L  L  Y  V  D  I  I  L  K  C  *  G  P  D  W  L  V  R  S  H  R  R  V  S  V  G  T  S  R  G  P  V  L  G  H  D  K  T  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  E  D  *  *  G  D  A  F  T  F  L  *  E  A  I  G  L  *  E  N  S  I  L  S  F  F  R  A  T  T  *  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  F  H  S  L  S  *  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  P  A  G  Q  G  V  S  E  P  A  N  G  A  V  </second_frame>
            <third_frame>   A  N  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G  L  D  L  L  L  Q  V  S  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  L  R  I  L  L  V  *  *  F  D  Y  R  C  S  C  D  D  D  F  Q  I  L  G  N  D  K  F  *  V  I  E  V  D  Y  *  F  L  L  M  S  L  S  L  P  H  Y  F  M  L  I  L  Y  *  N  V  K  V  Q  I  G  W  F  A  H  T  G  G  *  V  W  V  P  V  A  A  R  F  W  V  M  T  R  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  I  S  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  Q  H  Q  R  D  R  V  C  L  S  Q  P  M  G  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14377" stop="14183"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFRKIPFFLSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHQHQRDRVCLSQPMGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="15779" PGL_stop="14901"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15779" e_stop="15587"/>
            <exon e_start="15318" e_stop="14901"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.943"/>
          <exon-only e_score="0.899"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="15779" e_stop="15587" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15586" i_stop="15319" i_length="268"/>
          </intron>
          <exon e_serial="2" e_score="0.899">
            <gDNA_exon_boundary e_start="15318" e_stop="14901" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15779" stop="15587"/>
              <exon start="15318" stop="14993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15137" stop="14901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGTTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACTAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATACGGATCAGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGG : GTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGTATATTGAGGGGTGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAGTCTTGAAAGATGATAATATATTCAAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGCTGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGTTGCATGCTAAAGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGGTTATTTGTG</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T  F  R  Y  *  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  N  T  D  Q  V  P  R  S  G  T  R  I  E  Y  G  S   : G  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  V  Y  *  G  V  E  C  H  V  P  T  R  G  E  *  R  *  *  V  L  K  D  D  N  I  F  K  S  N  E  P  N  S  Q  M  S  M  M  R  R  R  E  S  S  L  L  C  L  V  L  *  P  R  V  M  V  T  V  N  V  A  C  *  R  Y  *  L  I  L  *  Y  C  L  I  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  C  F  L  L  G  Y  L   </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  V  *  *  M  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  R  I  R  I  R  C  H  V  P  V  P  G  *  N  M  D  R  :  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  Y  I  E  G  W  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  K  M  I  I  Y  S  N  L  M  N  L  I  P  K  *  V  *  *  G  G  V  S  P  H  C  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  I  V  F  F  L  V  I  C  </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  F  D  E  *  K  *  *  D  *  G  I  G  C  H  V  P  V  L  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G :   C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  S  I  L  R  G  G  V  S  R  T  D  T  R  G  I  K  I  M  S  L  E  R  *  *  Y  I  Q  I  *  *  T  *  F  P  N  E  Y  D  E  E  A  *  V  L  I  A  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  K  I  L  V  D  F  M  I  L  L  N  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  L  F  S  S  W  L  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0038P06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="19175" PGL_stop="19460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19175" e_stop="19460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="19175" e_stop="19460" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19175" stop="19460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGAGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTTCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCGACAACCGCGCCAACATCAACATCGACAAGACAAGAAGCATCTGAGCAAGCCACTGGGGATGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  S  I  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  S  T  S  T  R  Q  E  A  S  E  Q  A  T  G  D  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  E  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  R  Q  P  R  Q  H  Q  H  R  Q  D  K  K  H  L  S  K  P  L  G  M  * </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  R  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  S  F  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  D  N  R  A  N  I  N  I  D  K  T  R  S  I  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19224" stop="19460"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVEGRLYFSLRGYKTLGKFHSFFLSFVLLLGSNWYLGDTNWYLTIFTLFRRWLELERQPRQHQHRQDKKHLSKPLGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="19534" PGL_stop="20087"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19534" e_stop="20087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="19534" e_stop="20087" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19534" stop="20087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGACAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATAAATCGGGTGCTTGATTATCTTAGCGGGCTATCTGATCAAGGCCAAGTGCCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCGTGGATGCCTCATTGGAAATAGGCATGTTTCCTCGTCTGACTACAGGGCTGATAATGACAAATGATCAGCATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGATGCTGAATTGGAAGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCGCCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  G  D  S  S  T  D  *  R  S  S  K  T  G  *  G  R  G  N  *  A  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  K  S  G  A  *  L  S  *  R  A  I  *  S  R  P  S  A  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  R  G  C  L  I  G  N  R  H  V  S  S  S  D  Y  R  A  D  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  G  R  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  A  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  Q  G  E  E  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  R  V  L  D  Y  L  S  G  L  S  D  Q  G  Q  V  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  V  D  A  S  L  E  I  G  M  F  P  R  L  T  T  G  L  I  M  T  N  D  Q  H  K  L  F  S  K  F  L  K  L  K  P  P  V  F  K  D  A  E  L  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  R  *  L  L  H  R  L  K  K  *  *  D  R  V  R  K  G  K  L  S  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  *  I  G  C  L  I  I  L  A  G  Y  L  I  K  A  K  C  L  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  C  F  L  V  *  L  Q  G  *  *  *  Q  M  I  S  I  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  M  L  N  W  K  M  L  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  R  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19535" stop="20086"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVVRQGEEGETEQVQNEGLPPQPTPEMINRVLDYLSGLSDQGQVPPVFSAPAPQAPEVQHAATMAPRVDASLEIGMFPRLTTGLIMTNDQHKLFSKFLKLKPPVFKDAELEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="21185" PGL_stop="20855"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21185" e_stop="20855"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="21185" e_stop="20855" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21185" stop="20855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGGGAAAGACAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAAAAGGTATGTCAAGCAATTCACAATGTAAATTAAGAACATTAGCAAATACAGAAGATACATTTGAAAATGTGGAGCCAGGATCAAATAATACAGAAGCCATGCAATCACAAATCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  L  Q  N  L  G  K  D  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  S  L  H  K  Y  C  S  P  Q  K  L  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  K  V  C  Q  A  I  H  N  V  N  *  E  H  *  Q  I  Q  K  I  H  L  K  M  W  S  Q  D  Q  I  I  Q  K  P  C  N  H  K  S  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  C  K  I  W  G  K  T  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  I  S  I  A  P  H  K  S  Y  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  K  R  Y  V  K  Q  F  T  M  *  I  K  N  I  S  K  Y  R  R  Y  I  *  K  C  G  A  R  I  K  *  Y  R  S  H  A  I  T  N  Q </second_frame>
            <third_frame>   F  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  R  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  K  G  M  S  S  N  S  Q  C  K  L  R  T  L  A  N  T  E  D  T  F  E  N  V  E  P  G  S  N  N  T  E  A  M  Q  S  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21054" stop="20857"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTKVTRQDLYTFSTITDSPTGVETRKGMSSNSQCKLRTLANTEDTFENVEPGSNNTEAMQSQI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="25945" PGL_stop="26163"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25945" e_stop="26163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="25945" e_stop="26163" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25945" stop="26163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTACTCCGGATTTCAGGGTGAGCTAATGCTTCTAGCTTGGATTGGATCCTCCTCTTCATGTCTTGATGCCTTGATGTTCCGGCATGGACTAGCCGTTTATGTATTTTAGTTTCTTAGATACTCTTAGATTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAA</gDNA_template>
            <first_frame> S  L  L  R  I  S  G  *  A  N  A  S  S  L  D  W  I  L  L  F  M  S  *  C  L  D  V  P  A  W  T  S  R  L  C  I  L  V  S  *  I  L  L  D  L  V  I  *  S  R  C  S  C  D  D  D  F  Q  I  L  G  I  I  I  V  V  E  F  L  E  V  I  E </first_frame>
            <second_frame>  H  Y  S  G  F  Q  G  E  L  M  L  L  A  W  I  G  S  S  S  S  C  L  D  A  L  M  F  R  H  G  L  A  V  Y  V  F  *  F  L  R  Y  S  *  I  *  *  F  E  V  D  V  L  V  M  M  T  S  R  F  W  G  *  *  *  L  L  S  F  *  K  L  L   </second_frame>
            <third_frame>   I  T  P  D  F  R  V  S  *  C  F  *  L  G  L  D  P  P  L  H  V  L  M  P  *  C  S  G  M  D  *  P  F  M  Y  F  S  F  L  D  T  L  R  F  S  N  L  K  *  M  F  L  *  *  *  L  P  D  F  G  D  N  N  S  C  *  V  F  R  S  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0038P06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="41299" PGL_stop="33546"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37856" e_stop="36506"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="37856" e_stop="36506" e_length="1351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37856" stop="37144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37856" stop="37261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37856" stop="37331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37785" stop="37106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37785" stop="37427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37336" stop="36678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37267" stop="36506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37267" stop="36607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAGACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATATGATCACAAAGAGATCCAAGTATGGCTTAAAAATTCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTTGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAATCAGTCTTCGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGAGGAAGAGGATACATGTTCTTTATGGTTACCTTGTTCAATTGCCGGTAGTCCATGCATATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCATTTGGTATAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCATGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATATGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAACATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCGACTATCACAGACTCACCCACCGTAGTAGAAACACGAATAGGTATATCAAGTAATTCGCAATGTAAATTTAGACCATTAGCAAATGCGGAAGATACATATGTAAATGTAGAGCCAGAGTCAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGAT</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  V  W  L  K  N  S  V  H  Q  T  H  E  R  S  R  G  I  C  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  I  S  L  R  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  *  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  R  K  R  I  H  V  L  Y  G  Y  L  V  Q  L  P  V  V  H  A  Y  P  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  I  W  Y  N  E  A  F  V  Q  Q  L  L  K  L  G  F  *  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  M  E  H  I  Q  K  L  T  N  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  M  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  N  I  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  I  H  Q  T  R  P  I  Y  F  F  D  Y  H  R  L  T  H  R  S  R  N  T  N  R  Y  I  K  *  F  A  M  *  I  *  T  I  S  K  C  G  R  Y  I  C  K  C  R  A  R  V  K  Q  Y  K  S  H  A  I  T  N  R  K  I  T  C  D  D  S  I  *  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  R  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  I  S  S  I  N  M  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  S  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  M  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  F  G  I  M  K  P  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  W  N  T  S  K  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  C  T  G  L  E  V  *  S  P  S  H  T  N  G  F  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  T  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  V  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  A  E  D  T  Y  V  N  V  E  P  E  S  N  N  T  K  A  M  Q  S  Q  T  E  R  L  P  V  M  T  A  S  D </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  S  *  L  D  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  Y  H  Q  *  I  *  S  Q  R  D  P  S  M  A  *  K  F  R  S  S  N  S  *  T  Q  Q  G  H  L  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  N  Q  S  S  A  H  P  L  P  V  F  S  I  D  D  N  R  I  L  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  I  A  G  S  P  C  I  S  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  L  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  H  G  T  H  P  K  T  H  E  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  H  S  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  N  S  P  N  K  T  Y  I  L  F  R  L  S  Q  T  H  P  P  *  *  K  H  E  *  V  Y  Q  V  I  R  N  V  N  L  D  H  *  Q  M  R  K  I  H  M  *  M  *  S  Q  S  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37691" stop="37386"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVYQYIINKYDHKEIQVWLKNSVHQTHERSRGICKTKRHHYKFVMPIPGSKISLRHIRCPYFQLMITGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37129" stop="36884"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAWNTSKNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMICTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36733" stop="36506"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTKFTKQDLYTFSTITDSPTVVETRIGISSNSQCKFRPLANAEDTYVNVEPESNNTKAMQSQTERLPVMTASD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37856" e_stop="36755"/>
            <exon e_start="36022" e_stop="35229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.941"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="37856" e_stop="36755" e_length="1102"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36754" i_stop="36023" i_length="732"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="36022" e_stop="35229" e_length="794"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37856" stop="37144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37856" stop="37261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37856" stop="37331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37785" stop="37106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37785" stop="37427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37241" stop="36755"/>
              <exon start="36022" stop="35852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35948" stop="35229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35945" stop="35282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAGACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATATGATCACAAAGAGATCCAAGTATGGCTTAAAAATTCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTTGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAATCAGTCTTCGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTTAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGAGGAAGAGGATACATGTTCTTTATGGTTACCTTGTTCAATTGCCGGTAGTCCATGCATATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCATTTGGTATAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCATGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATATGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAACATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCT : TGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGTGGGATATACTTCTCCATAAACAAACCAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACGCTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGTTGATCATTTGTCATTATAGGCCCGGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTGGTACCTCTGGAGCCTGAGGTGCTGGTGTAGAAAACACTAGAGGCGTTTGACCTTGATCAGATAACCCACTAAGATAAGCAAGCACCTGATTTATCATCTCTGGGATAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTAGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  V  W  L  K  N  S  V  H  Q  T  H  E  R  S  R  G  I  C  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  I  S  L  R  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  *  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  R  K  R  I  H  V  L  Y  G  Y  L  V  Q  L  P  V  V  H  A  Y  P  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  I  W  Y  N  E  A  F  V  Q  Q  L  L  K  L  G  F  *  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  M  E  H  I  Q  K  L  T  N  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  M  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  N  I  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F   : L  E  G  F  C  R  S  R  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  G  G  I  P  *  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  W  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  G  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  W  Y  L  W  S  L  R  C  W  C  R  K  H  *  R  R  L  T  L  I  R  *  P  T  K  I  S  K  H  L  I  Y  H  L  W  D  R  L  G  W  Q  S  L  I  L  H  L  F  I  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  R  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  I  S  S  I  N  M  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  S  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  M  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  F  G  I  M  K  P  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  W  N  T  S  K  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  C  T  G  L  E  V  *  S  P  S  H  T  N  G  F  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  T  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  :  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  P  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  R  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  G  T  S  G  A  *  G  A  G  V  E  N  T  R  G  V  *  P  *  S  D  N  P  L  R  *  A  S  T  *  F  I  I  S  G  I  G  W  G  G  N  P  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G   </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  S  *  L  D  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  Y  H  Q  *  I  *  S  Q  R  D  P  S  M  A  *  K  F  R  S  S  N  S  *  T  Q  Q  G  H  L  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  N  Q  S  S  A  H  P  L  P  V  F  S  I  D  D  N  R  I  L  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  I  A  G  S  P  C  I  S  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  L  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  H  G  T  H  P  K  T  H  E  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  H  S  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L :   G  R  I  L  P  *  P  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  G  W  H  T  L  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  V  G  Y  T  S  P  *  T  N  Q  R  M  R  P  K  S  *  V  V  P  L  L  V  D  A  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  H  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  V  D  H  L  S  L  *  A  R  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  E  P  E  V  L  V  *  K  T  L  E  A  F  D  L  D  Q  I  T  H  *  D  K  Q  A  P  D  L  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  H  F  P  H  P  P  L  L  L  L  L  P  Q  *  V  E  E  S  L  P  *  Y  Q  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36883" stop="36755"/>
                    <exon start="36022" stop="35738"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSHTNGFVPGLANVTVLALQSKIATFGESQVIPRITSKSTISWKDFAVAATCKAEIRNSDLNPFTKRRIRSCGLKQSWVAYLDSARNLASYALTDILPCSRLKNSSLFLSLKVRGIYFSINKPENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37691" stop="37386"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVYQYIINKYDHKEIQVWLKNSVHQTHERSRGICKTKRHHYKFVMPIPGSKISLRHIRCPYFQLMITGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37129" stop="36884"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAWNTSKNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMICTGLEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="34399" e_stop="34062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="34399" e_stop="34062" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34399" stop="34062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAATAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTAATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  Q  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  T  C  R  F  V  T  P  D   </first_frame>
            <second_frame>  L  N  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  *  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  N  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G  S  *  H  P  I  </second_frame>
            <third_frame>   *  I  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  N  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  V  R  D  T  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0038P06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="39337" e_stop="39161"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="39337" e_stop="39161" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39337" stop="39161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGCATGAAAATTCCACTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCATACATGCGCGAAGCATATCCTCCAACACTTGAATCGTTCTCTCAGACTGACCGTCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  H  E  N  S  T  K  G  K  K  L  S  Q  W  P  P  N  S  I  I  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  I  P  L  R  V  R  S  Y  P  N  G  H  Q  T  L  S  Y  M  R  E  A  Y  P  P  T  L  E  S  F  S  Q  T  D  R   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  A  *  K  F  H  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  A  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0038P06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="41299" e_stop="41151"/>
            <exon e_start="34115" e_stop="33546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.933"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="41299" e_stop="41151" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41150" i_stop="34116" i_length="7035"/>
          </intron>
          <exon e_serial="2" e_score="0.923">
            <gDNA_exon_boundary e_start="34115" e_stop="33546" e_length="570"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41299" stop="41151"/>
              <exon start="34115" stop="33546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCTTAAATCTACGTGTCG : GTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCGTAATTCTACGTGTCGGTTCGTGACACTCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACATGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTAATCTCCTTCTATCAATTCATCAAGCCTTCTTTCTTACCAAGGCATCATCAATCCCATTATTTTAGTTCATCACACCTTCTTTACCAAGGCCTCATTATTAACAAAGAGATTAGGATTTTGCAAGATTTGGGATTCAATAACTTCATCACGCTTATATAATCACAATTATATAATTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTGCAATATTATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACCATAACCTACCTCCACCGATGATTA</gDNA_template>
            <first_frame> S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  Q  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  L  K  S  T  C  R :   Y  V  T  L  R  S  P  K  S  T  C  R  F  V  T  P  D  P  V  I  L  R  V  G  S  *  H  S  I  P  *  F  Y  V  S  V  R  D  T  R  S  P  N  T  T  C  R  F  V  T  P  D  P  L  I  L  H  V  G  S  *  H  P  I  P  *  Y  Y  V  S  V  R  D  T  R  S  P  N  T  T  C  R  F  V  T  P  D  P  L  I  S  F  Y  Q  F  I  K  P  S  F  L  P  R  H  H  Q  S  H  Y  F  S  S  S  H  L  L  Y  Q  G  L  I  I  N  K  E  I  R  I  L  Q  D  L  G  F  N  N  F  I  T  L  I  *  S  Q  L  Y  N  Y  I  H  A  S  I  Q  L  S  T  *  Q  G  L  Q  Y  Y  Q  Y  I  S  F  A  I  K  S  L  L  R  I  S  *  E  K  P  *  P  T  S  T  D  D   </first_frame>
            <second_frame>  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  N  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V   : G  T  *  H  S  D  P  L  N  L  R  V  G  S  *  H  P  I  P  *  F  Y  V  S  V  R  D  T  R  S  P  N  S  T  C  R  F  V  T  P  D  P  L  I  L  R  V  G  S  *  H  P  I  P  *  Y  Y  M  S  V  R  D  T  R  S  P  N  T  T  C  R  F  V  T  P  D  P  L  I  L  R  V  G  S  *  H  P  I  P  *  S  P  S  I  N  S  S  S  L  L  S  Y  Q  G  I  I  N  P  I  I  L  V  H  H  T  F  F  T  K  A  S  L  L  T  K  R  L  G  F  C  K  I  W  D  S  I  T  S  S  R  L  Y  N  H  N  Y  I  I  T  F  M  Q  A  Y  N  *  A  H  S  R  V  C  N  I  I  N  T  Y  H  S  L  L  R  V  Y  Y  E  Y  R  K  R  N  H  N  L  P  P  P  M  I  </second_frame>
            <third_frame>   M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  :  V  R  D  T  P  I  P  *  I  Y  V  S  V  R  D  T  R  S  R  N  S  T  C  R  F  V  T  L  D  P  L  I  L  R  V  G  S  *  H  P  I  P  *  Y  Y  V  S  V  R  D  T  R  S  P  N  T  T  C  R  F  V  T  P  D  P  L  I  L  R  V  G  S  *  H  P  I  P  *  Y  Y  V  S  V  R  D  T  R  S  P  N  L  L  L  S  I  H  Q  A  F  F  L  T  K  A  S  S  I  P  L  F  *  F  I  T  P  S  L  P  R  P  H  Y  *  Q  R  D  *  D  F  A  R  F  G  I  Q  *  L  H  H  A  Y  I  I  T  I  I  *  L  H  S  C  K  H  T  I  K  H  I  A  G  F  A  I  L  S  I  H  I  I  R  Y  *  E  F  T  T  N  I  V  R  E  T  I  T  Y  L  H  R  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33916" stop="33689"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYVSVRDTRSPNTTCRFVTPDPLISFYQFIKPSFLPRHHQSHYFSSSHLLYQGLIINKEIRILQDLGFNNFITLI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41272" stop="41151"/>
                    <exon start="34115" stop="34037"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLSRFIIFISLVSVRDTPLPQYSLILLCRYVTLRSLKSTCRYVTLRSPKSTCRFVTPDPVILRVGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33846" stop="33649"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSINSSSLLSYQGIINPIILVHHTFFTKASLLTKRLGFCKIWDSITSSRLYNHNYIITFMQAYN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="34072" PGL_stop="34552"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34072" e_stop="34552"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="34072" e_stop="34552" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34072" stop="34310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34073" stop="34552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATTAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTATTCAGTACCCGTGTTTTGTACTGACCCCTGCTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCACTACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  I  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  L  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  I  Q  Y  P  C  F  V  L  T  P  A  F  M  F  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  H  Y  I  G  S  S  G  *  A  N  A  S  S  L  D  </first_frame>
            <second_frame>  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  L  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  *  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  F  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  *  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  T  T  S  D  L  Q  G  E  L  M  L  L  A  W  T </second_frame>
            <third_frame>   T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  I  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  C  F  Y  V  F  F  L  F  N  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  H  R  I  F  R  V  S  *  C  F  *  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34336" stop="34530"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISIQYPCFVLTPAFMFSSCLIVECSKRAVIFDSTVTLASLHYIGSSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="40722" PGL_stop="41122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40722" e_stop="41122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="40722" e_stop="41122" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40722" stop="41122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATCATCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGCAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCGTGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTAAAGAAGGCATGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATAAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCAACACGTAGTATTAGGGGATCGGGTGTCACGAATCGACACG</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  V  M  K  L  L  N  P  K  S  C  K  I  L  I  S  L  L  I  M  R  P  W  *  R  R  H  D  E  L  K  *  W  D  *  *  C  L  G  K  K  E  G  L  I  N  *  *  K  E  I  R  G  S  G  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  N  T  *  Y  *  G  I  G  C  H  E  S  T   </first_frame>
            <second_frame>  N  H  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  A  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  S  *  S  L  C  *  *  *  G  L  G  K  E  G  M  M  N  *  N  N  G  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  P  T  R  S  I  R  G  S  G  V  T  N  R  H  </second_frame>
            <third_frame>   I  I  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  Q  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  R  D  E  V  I  E  S  Q  I  L  Q  N  P  N  L  F  V  N  N  E  A  L  V  K  K  A  *  *  T  K  I  M  G  L  M  M  P  W  *  E  R  R  L  D  K  L  I  E  G  D  *  G  I  G  C  H  E  P  T  R  S  I  R  G  S  G  V  T  N  Q  H  V  V  L  G  D  R  V  S  R  I  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0038P06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="41143" PGL_stop="41381"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41143" e_stop="41381"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="41143" e_stop="41381" e_length="239"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41143" stop="41381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAACCGACACGTAGATTTAAGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  I  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L   </first_frame>
            <second_frame>  H  E  P  T  R  R  F  K  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  L  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  </second_frame>
            <third_frame>   T  N  R  H  V  D  L  R  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0038P06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="45765" PGL_stop="43399"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45765" e_stop="45396"/>
            <exon e_start="43994" e_stop="43399"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45765" e_stop="45396" e_length="370"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45395" i_stop="43995" i_length="1401"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="43994" e_stop="43399" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45765" stop="45396"/>
              <exon start="43994" stop="43446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45763" stop="45396"/>
              <exon start="43994" stop="43497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45753" stop="45396"/>
              <exon start="43994" stop="43403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45741" stop="45396"/>
              <exon start="43994" stop="43856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45741" stop="45396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45738" stop="45396"/>
              <exon start="43994" stop="43399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45721" stop="45396"/>
              <exon start="43994" stop="43959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45626" stop="45396"/>
              <exon start="43994" stop="43583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45625" stop="45396"/>
              <exon start="43994" stop="43599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45585" stop="45396"/>
              <exon start="43994" stop="43452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260600" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCCTTCTCATCATAGAAATCAGAAAAGCTAATCGGTGAGTGTTTCTTATTAAAGTACACATAAGAAAATTTCAATTAATTTATTAGCAATGTCTTTGTCAGGCTTAGTTTTGAAAAATATCTATAAAAAATCGAATGCAAGTGTGAGGCATTTGAGTAATAATGTGCAGAAACAGGGCTGGTGCTCTGAACTTGTACGTCGTTTTTCTACAGAGTCTGAGAAACAACAAGTAGATGGCAGTGGAAAATCGGAGAAACAAGAAGTAGCTGTTTCCGACAGTGGCAAACAATCGAAGCTATTTCAAAGAAGACGCCGCCGTGGTAATCTTTGGAGACGCAATGAATACGACTTTGCACCTGCTCTTGTCG : AAAACTTACCAACGGGACTTGGCAATGCATTATTGCAAGCCACACAGAACATCAACAAGATATTTGATAATTTCAACTTGAATCCCTCACAATTACTGGGAAGGTACAAAGAGGATGATAAGAATTACAAAATCCGTTACGACGTGCCAGGACTCGGCAAGAAGGACGTGAAGATCATGGTTGAGGATGGAATTTTGACAATAAAAGGTGAACACAAACAAGAGAAGGAAGAAGAAGGATCAGATGATGAGTTTTGGTCATCAACAAGTTATGGTTACTATAATAATAGCATTGTGTTGCCTCAAGATGCTAAGGTTGATGAAATTAAAGCTGAGATGAAAGATGGTGTTTTGACAATTACTATTCCTAAAAGTGACAAACCTAAGAAAGATGTTAAGGAAATTGAAGTTTTGTGAGGTTTTTCTTTGGCAGTATTACCTCTGACATGTTTGTGAGTGTCTTCATAATAATAATTTAAGTTTTCTTCAGTTTCAAGAGGGTGTGACAAGAATGGCTTTGCTTTATTCGAAAAAATTGGCCATAATTTTGGCCAAGAATTGTTTCAAAATAAAATCTATCGTTTTGTTATTTTATAA</gDNA_template>
            <first_frame> I  P  S  H  H  R  N  Q  K  S  *  S  V  S  V  S  Y  *  S  T  H  K  K  I  S  I  N  L  L  A  M  S  L  S  G  L  V  L  K  N  I  Y  K  K  S  N  A  S  V  R  H  L  S  N  N  V  Q  K  Q  G  W  C  S  E  L  V  R  R  F  S  T  E  S  E  K  Q  Q  V  D  G  S  G  K  S  E  K  Q  E  V  A  V  S  D  S  G  K  Q  S  K  L  F  Q  R  R  R  R  R  G  N  L  W  R  R  N  E  Y  D  F  A  P  A  L  V   : E  N  L  P  T  G  L  G  N  A  L  L  Q  A  T  Q  N  I  N  K  I  F  D  N  F  N  L  N  P  S  Q  L  L  G  R  Y  K  E  D  D  K  N  Y  K  I  R  Y  D  V  P  G  L  G  K  K  D  V  K  I  M  V  E  D  G  I  L  T  I  K  G  E  H  K  Q  E  K  E  E  E  G  S  D  D  E  F  W  S  S  T  S  Y  G  Y  Y  N  N  S  I  V  L  P  Q  D  A  K  V  D  E  I  K  A  E  M  K  D  G  V  L  T  I  T  I  P  K  S  D  K  P  K  K  D  V  K  E  I  E  V  L  *  G  F  S  L  A  V  L  P  L  T  C  L  *  V  S  S  *  *  *  F  K  F  S  S  V  S  R  G  C  D  K  N  G  F  A  L  F  E  K  I  G  H  N  F  G  Q  E  L  F  Q  N  K  I  Y  R  F  V  I  L  * </first_frame>
            <second_frame>  F  L  L  I  I  E  I  R  K  A  N  R  *  V  F  L  I  K  V  H  I  R  K  F  Q  L  I  Y  *  Q  C  L  C  Q  A  *  F  *  K  I  S  I  K  N  R  M  Q  V  *  G  I  *  V  I  M  C  R  N  R  A  G  A  L  N  L  Y  V  V  F  L  Q  S  L  R  N  N  K  *  M  A  V  E  N  R  R  N  K  K  *  L  F  P  T  V  A  N  N  R  S  Y  F  K  E  D  A  A  V  V  I  F  G  D  A  M  N  T  T  L  H  L  L  L  S  :  K  T  Y  Q  R  D  L  A  M  H  Y  C  K  P  H  R  T  S  T  R  Y  L  I  I  S  T  *  I  P  H  N  Y  W  E  G  T  K  R  M  I  R  I  T  K  S  V  T  T  C  Q  D  S  A  R  R  T  *  R  S  W  L  R  M  E  F  *  Q  *  K  V  N  T  N  K  R  R  K  K  K  D  Q  M  M  S  F  G  H  Q  Q  V  M  V  T  I  I  I  A  L  C  C  L  K  M  L  R  L  M  K  L  K  L  R  *  K  M  V  F  *  Q  L  L  F  L  K  V  T  N  L  R  K  M  L  R  K  L  K  F  C  E  V  F  L  W  Q  Y  Y  L  *  H  V  C  E  C  L  H  N  N  N  L  S  F  L  Q  F  Q  E  G  V  T  R  M  A  L  L  Y  S  K  K  L  A  I  I  L  A  K  N  C  F  K  I  K  S  I  V  L  L  F  Y   </second_frame>
            <third_frame>   S  F  S  S  *  K  S  E  K  L  I  G  E  C  F  L  L  K  Y  T  *  E  N  F  N  *  F  I  S  N  V  F  V  R  L  S  F  E  K  Y  L  *  K  I  E  C  K  C  E  A  F  E  *  *  C  A  E  T  G  L  V  L  *  T  C  T  S  F  F  Y  R  V  *  E  T  T  S  R  W  Q  W  K  I  G  E  T  R  S  S  C  F  R  Q  W  Q  T  I  E  A  I  S  K  K  T  P  P  W  *  S  L  E  T  Q  *  I  R  L  C  T  C  S  C  R :   K  L  T  N  G  T  W  Q  C  I  I  A  S  H  T  E  H  Q  Q  D  I  *  *  F  Q  L  E  S  L  T  I  T  G  K  V  Q  R  G  *  *  E  L  Q  N  P  L  R  R  A  R  T  R  Q  E  G  R  E  D  H  G  *  G  W  N  F  D  N  K  R  *  T  Q  T  R  E  G  R  R  R  I  R  *  *  V  L  V  I  N  K  L  W  L  L  *  *  *  H  C  V  A  S  R  C  *  G  *  *  N  *  S  *  D  E  R  W  C  F  D  N  Y  Y  S  *  K  *  Q  T  *  E  R  C  *  G  N  *  S  F  V  R  F  F  F  G  S  I  T  S  D  M  F  V  S  V  F  I  I  I  I  *  V  F  F  S  F  K  R  V  *  Q  E  W  L  C  F  I  R  K  N  W  P  *  F  W  P  R  I  V  S  K  *  N  L  S  F  C  Y  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45711" stop="45396"/>
                    <exon start="43994" stop="43579"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STHKKISINLLAMSLSGLVLKNIYKKSNASVRHLSNNVQKQGWCSELVRRFSTESEKQQVDGSGKSEKQEVAVSDSGKQSKLFQRRRRRGNLWRRNEYDFAPALVENLPTGLGNALLQATQNINKIFDNFNLNPSQLLGRYKEDDKNYKIRYDVPGLGKKDVKIMVEDGILTIKGEHKQEKEEEGSDDEFWSSTSYGYYNNSIVLPQDAKVDEIKAEMKDGVLTITIPKSDKPKKDVKEIEVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="48904" PGL_stop="50752"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48904" e_stop="49259"/>
            <exon e_start="50448" e_stop="50519"/>
            <exon e_start="50692" e_stop="50752"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.972" e_score="0.997"/>
          <exon-intron don_prob="0.985" acc_prob="0.873" e_score="0.972"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="48904" e_stop="49259" e_length="356"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.972">
            <gDNA_intron_boundary i_start="49260" i_stop="50447" i_length="1188"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="50448" e_stop="50519" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.873">
            <gDNA_intron_boundary i_start="50520" i_stop="50691" i_length="172"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50692" e_stop="50752" e_length="61"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48904" stop="49259"/>
              <exon start="50448" stop="50519"/>
              <exon start="50692" stop="50752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310244" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATAACCGTTTAAATAAATTCTCTTTTTCTTCATTTCTCTGTAAAATCATCTATGGCTTCTGGAGCGAACTCTTTGATGTGGTTCAGGAAGGGTTTGAGACTCCATGATAATCCAGCTTTGGAATATGCAGCTAAAGGATCGAAGTTTTTGTACCCTGTTTTCGTGATTGATCCACACTATATGGACCCTGATCCGACTGCATTTTCTCTGGGTTCATCTAAAGCCGGGTTGAACCGGATACAGTTTTTGCTTGAAAGCCTTGCTGATCTCGATTTGAGTCTTAAGAAGGTTGGTTCACGTTTGTTGGTGCTCAAGGGTGACCCTGGTGAGCTCTTGATTCGCTGCTTGAAGGAG : TGGAGCATAGGCAAACTTTGCTTTGAGTACGACACAGAGCCCTACTATCAAGCTTTAGATGAAAAAGTTAAG : GGCTATGTTTCTGGAACTGGTGTAGAGATTTTCTCTCCTGTGAGCCATACCCTCTACAATC</gDNA_template>
            <first_frame> P  *  P  F  K  *  I  L  F  F  F  I  S  L  *  N  H  L  W  L  L  E  R  T  L  *  C  G  S  G  R  V  *  D  S  M  I  I  Q  L  W  N  M  Q  L  K  D  R  S  F  C  T  L  F  S  *  L  I  H  T  I  W  T  L  I  R  L  H  F  L  W  V  H  L  K  P  G  *  T  G  Y  S  F  C  L  K  A  L  L  I  S  I  *  V  L  R  R  L  V  H  V  C  W  C  S  R  V  T  L  V  S  S  *  F  A  A  *  R  S :   G  A  *  A  N  F  A  L  S  T  T  Q  S  P  T  I  K  L  *  M  K  K  L  R :   A  M  F  L  E  L  V  *  R  F  S  L  L  *  A  I  P  S  T  I </first_frame>
            <second_frame>  H  N  R  L  N  K  F  S  F  S  S  F  L  C  K  I  I  Y  G  F  W  S  E  L  F  D  V  V  Q  E  G  F  E  T  P  *  *  S  S  F  G  I  C  S  *  R  I  E  V  F  V  P  C  F  R  D  *  S  T  L  Y  G  P  *  S  D  C  I  F  S  G  F  I  *  S  R  V  E  P  D  T  V  F  A  *  K  P  C  *  S  R  F  E  S  *  E  G  W  F  T  F  V  G  A  Q  G  *  P  W  *  A  L  D  S  L  L  E  G   : V  E  H  R  Q  T  L  L  *  V  R  H  R  A  L  L  S  S  F  R  *  K  S  *   : G  L  C  F  W  N  W  C  R  D  F  L  S  C  E  P  Y  P  L  Q   </second_frame>
            <third_frame>   I  T  V  *  I  N  S  L  F  L  H  F  S  V  K  S  S  M  A  S  G  A  N  S  L  M  W  F  R  K  G  L  R  L  H  D  N  P  A  L  E  Y  A  A  K  G  S  K  F  L  Y  P  V  F  V  I  D  P  H  Y  M  D  P  D  P  T  A  F  S  L  G  S  S  K  A  G  L  N  R  I  Q  F  L  L  E  S  L  A  D  L  D  L  S  L  K  K  V  G  S  R  L  L  V  L  K  G  D  P  G  E  L  L  I  R  C  L  K  E  :  W  S  I  G  K  L  C  F  E  Y  D  T  E  P  Y  Y  Q  A  L  D  E  K  V  K  :  G  Y  V  S  G  T  G  V  E  I  F  S  P  V  S  H  T  L  Y  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48918" stop="49259"/>
                    <exon start="50448" stop="50519"/>
                    <exon start="50692" stop="50751"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INSLFLHFSVKSSMASGANSLMWFRKGLRLHDNPALEYAAKGSKFLYPVFVIDPHYMDPDPTAFSLGSSKAGLNRIQFLLESLADLDLSLKKVGSRLLVLKGDPGELLIRCLKEWSIGKLCFEYDTEPYYQALDEKVKGYVSGTGVEIFSPVSHTLYN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="55276" PGL_stop="63689"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55276" e_stop="55604"/>
            <exon e_start="55781" e_stop="55860"/>
            <exon e_start="55967" e_stop="56017"/>
            <exon e_start="61189" e_stop="61255"/>
            <exon e_start="61377" e_stop="61456"/>
            <exon e_start="63299" e_stop="63484"/>
            <exon e_start="63568" e_stop="63689"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.942" e_score="0.901"/>
          <exon-only e_score="0.458"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55276" e_stop="55604" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55781" e_stop="55860" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55967" e_stop="56017" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61189" e_stop="61255" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="61256" i_stop="61376" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61377" e_stop="61456" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61457" i_stop="63298" i_length="1842"/>
          </intron>
          <exon e_serial="6" e_score="0.901">
            <gDNA_exon_boundary e_start="63299" e_stop="63484" e_length="186"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.942">
            <gDNA_intron_boundary i_start="63485" i_stop="63567" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="0.458">
            <gDNA_exon_boundary e_start="63568" e_stop="63689" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55276" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55278" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55279" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55279" stop="55503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55284" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="55997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55315" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55368" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55368" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55369" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55369" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55375" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55407" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55436" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63484"/>
              <exon start="63568" stop="63689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55452" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55468" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55980" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305790" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTGAGTCAACCTTGGCCGAAGCCGCCGGCCAGTGGCACCCTTATTTGCCATTTCATTTCCACAAAAAAGAGAAGATACAGAGCGTTGATAAGAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG : AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA : GGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG : GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAG : AAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTG : TTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATAGTCCGTCTTGCAATTTTTTGTCGGAATAATTTTGGTGAAAAAAATAGAAAATTCCTCCTTTTATAAACTGAGAATTCCAAAGCTTGGTTCTTTCTTTGCCTTTACCGGATAATTGTTT : AGAAGATGGGTGGGGGGGGCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> S  E  S  T  L  A  E  A  A  G  Q  W  H  P  Y  L  P  F  H  F  H  K  K  E  K  I  Q  S  V  D  K  N  K  S  P  S  I  Y  T  H  R  G  *  P  E  I  Q  L  N  T  H  Y  V  E  K  T  L  F  A  P  P  N  P  T  P  T  S  I  Y  S  Q  N  Q  F  I  R  R  R  R  R  R  H  H  L  R  I  F  F  S  I  S  G  S  L  P  F  V  G  H  F  L  P  S  P  L  Q  Y  R  I  R :   E  C  C  *  E  S  G  G  C  N  A  D  C  N  W  S  *  A  *  G  A  *  S  *  A  P   : R  K  G  Y  S  *  H  *  L  S  *  R  S  F  W  Y  K   : G  S  A  C  C  C  Q  I  L  L  *  *  K  S  C  R  M  P  W  R  *  R  R :   R  *  A  *  C  C  L  V  L  A  R  E  G  Q  A  T  *  M  P  S  M  L  T  V  F  C   : V  G  S  G  W  T  W  R  T  S  *  W  T  W  Q  *  *  *  G  S  S  L  I  V  R  L  A  I  F  C  R  N  N  F  G  E  K  N  R  K  F  L  L  L  *  T  E  N  S  K  A  W  F  F  L  C  L  Y  R  I  I  V   : *  K  M  G  G  G  G  P  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  V  S  Q  P  W  P  K  P  P  A  S  G  T  L  I  C  H  F  I  S  T  K  K  R  R  Y  R  A  L  I  R  T  S  L  H  L  Y  T  H  T  G  A  D  L  R  S  N  *  T  H  T  M  S  R  K  L  S  S  H  L  R  T  L  H  L  L  R  S  T  P  K  T  N  S  F  A  A  A  A  A  A  T  T  S  V  S  S  S  Q  S  P  A  A  F  R  S  S  V  T  F  F  P  R  H  F  S  T  V  S   : E  N  V  V  K  K  V  E  D  V  M  P  I  A  T  G  H  E  R  E  E  L  E  A  E  L  Q  :  G  R  D  I  L  D  I  N  F  P  E  G  P  F  G  T  K  :  E  A  P  A  V  V  K  S  Y  Y  D  R  R  V  V  G  C  P  G  D  E  G   : E  D  E  H  D  V  V  W  F  W  L  E  K  G  K  P  H  E  C  P  V  C  S  Q  Y  F  V  :  L  E  V  V  G  P  G  G  P  P  D  G  H  G  S  D  D  E  G  H  H  *  *  S  V  L  Q  F  F  V  G  I  I  L  V  K  K  I  E  N  S  S  F  Y  K  L  R  I  P  K  L  G  S  F  F  A  F  T  G  *  L  F  :  R  R  W  V  G  G  A  P  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   *  V  N  L  G  R  S  R  R  P  V  A  P  L  F  A  I  S  F  P  Q  K  R  E  D  T  E  R  *  *  E  Q  V  S  I  Y  I  H  T  Q  G  L  T  *  D  P  T  E  H  T  L  C  R  E  N  S  L  R  T  S  E  P  Y  T  Y  F  D  L  L  P  K  P  I  H  S  P  P  P  P  P  P  P  P  P  Y  L  L  L  N  L  R  Q  P  S  V  R  R  S  L  S  S  L  A  T  S  V  P  Y  Q  :  R  M  L  L  R  K  W  R  M  *  C  R  L  Q  L  V  M  S  V  R  S  L  K  L  S  S  K :   E  G  I  F  L  T  L  T  F  L  K  V  L  L  V  Q  R :   K  R  L  L  L  S  N  P  T  M  I  E  E  L  *  D  A  L  E  M  K  E  :  K  M  S  M  M  L  F  G  S  G  S  R  R  A  S  H  M  N  A  Q  Y  A  H  S  I  L  C :   W  K  W  L  D  L  E  D  L  L  M  D  M  A  V  M  M  R  V  I  I  D  S  P  S  C  N  F  L  S  E  *  F  W  *  K  K  *  K  I  P  P  F  I  N  *  E  F  Q  S  L  V  L  S  L  P  L  P  D  N  C  L :   E  D  G  W  G  G  P  H  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55421" stop="55604"/>
                    <exon start="55781" stop="55860"/>
                    <exon start="55967" stop="56017"/>
                    <exon start="61189" stop="61255"/>
                    <exon start="61377" stop="61456"/>
                    <exon start="63299" stop="63364"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THTMSRKLSSHLRTLHLLRSTPKTNSFAAAAAATTSVSSSQSPAAFRSSVTFFPRHFSTVSENVVKKVEDVMPIATGHEREELEAELQGRDILDINFPEGPFGTKEAPAVVKSYYDRRVVGCPGDEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHGSDDEGHH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="55276" e_stop="55604"/>
            <exon e_start="55781" e_stop="55860"/>
            <exon e_start="55967" e_stop="56017"/>
            <exon e_start="61189" e_stop="61255"/>
            <exon e_start="61377" e_stop="61456"/>
            <exon e_start="63299" e_stop="63508"/>
            <exon e_start="63568" e_stop="63683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.942" e_score="0.901"/>
          <exon-only e_score="0.375"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55276" e_stop="55604" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55781" e_stop="55860" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55967" e_stop="56017" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61189" e_stop="61255" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="61256" i_stop="61376" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61377" e_stop="61456" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61457" i_stop="63298" i_length="1842"/>
          </intron>
          <exon e_serial="6" e_score="0.901">
            <gDNA_exon_boundary e_start="63299" e_stop="63508" e_length="210"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.942">
            <gDNA_intron_boundary i_start="63509" i_stop="63567" i_length="59"/>
          </intron>
          <exon e_serial="7" e_score="0.375">
            <gDNA_exon_boundary e_start="63568" e_stop="63683" e_length="116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55276" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55278" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55279" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55279" stop="55503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55284" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="55997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55315" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55368" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55368" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55369" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55369" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55375" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55407" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55452" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55468" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55541" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63508"/>
              <exon start="63568" stop="63683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55980" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305790" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTGAGTCAACCTTGGCCGAAGCCGCCGGCCAGTGGCACCCTTATTTGCCATTTCATTTCCACAAAAAAGAGAAGATACAGAGCGTTGATAAGAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG : AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA : GGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG : GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAG : AAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTG : TTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATAGTCCGTCTTGCAATTTTTTGTCGGAATAATTTTGGTGAAAAAAATAGAAAATTCCTCCTTTTATAAACTGAGAATTCCAAAGCTTGGTTCTTTCTTTGCCTTTACCGGATAATTGTTTCTTTTTCTTTTGCTGGGGAAAACC : AGAAGATGGGTGGGGGGGGCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> S  E  S  T  L  A  E  A  A  G  Q  W  H  P  Y  L  P  F  H  F  H  K  K  E  K  I  Q  S  V  D  K  N  K  S  P  S  I  Y  T  H  R  G  *  P  E  I  Q  L  N  T  H  Y  V  E  K  T  L  F  A  P  P  N  P  T  P  T  S  I  Y  S  Q  N  Q  F  I  R  R  R  R  R  R  H  H  L  R  I  F  F  S  I  S  G  S  L  P  F  V  G  H  F  L  P  S  P  L  Q  Y  R  I  R :   E  C  C  *  E  S  G  G  C  N  A  D  C  N  W  S  *  A  *  G  A  *  S  *  A  P   : R  K  G  Y  S  *  H  *  L  S  *  R  S  F  W  Y  K   : G  S  A  C  C  C  Q  I  L  L  *  *  K  S  C  R  M  P  W  R  *  R  R :   R  *  A  *  C  C  L  V  L  A  R  E  G  Q  A  T  *  M  P  S  M  L  T  V  F  C   : V  G  S  G  W  T  W  R  T  S  *  W  T  W  Q  *  *  *  G  S  S  L  I  V  R  L  A  I  F  C  R  N  N  F  G  E  K  N  R  K  F  L  L  L  *  T  E  N  S  K  A  W  F  F  L  C  L  Y  R  I  I  V  S  F  S  F  A  G  E  N   : Q  K  M  G  G  G  G  P  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  V  S  Q  P  W  P  K  P  P  A  S  G  T  L  I  C  H  F  I  S  T  K  K  R  R  Y  R  A  L  I  R  T  S  L  H  L  Y  T  H  T  G  A  D  L  R  S  N  *  T  H  T  M  S  R  K  L  S  S  H  L  R  T  L  H  L  L  R  S  T  P  K  T  N  S  F  A  A  A  A  A  A  T  T  S  V  S  S  S  Q  S  P  A  A  F  R  S  S  V  T  F  F  P  R  H  F  S  T  V  S   : E  N  V  V  K  K  V  E  D  V  M  P  I  A  T  G  H  E  R  E  E  L  E  A  E  L  Q  :  G  R  D  I  L  D  I  N  F  P  E  G  P  F  G  T  K  :  E  A  P  A  V  V  K  S  Y  Y  D  R  R  V  V  G  C  P  G  D  E  G   : E  D  E  H  D  V  V  W  F  W  L  E  K  G  K  P  H  E  C  P  V  C  S  Q  Y  F  V  :  L  E  V  V  G  P  G  G  P  P  D  G  H  G  S  D  D  E  G  H  H  *  *  S  V  L  Q  F  F  V  G  I  I  L  V  K  K  I  E  N  S  S  F  Y  K  L  R  I  P  K  L  G  S  F  F  A  F  T  G  *  L  F  L  F  L  L  L  G  K  T  :  R  R  W  V  G  G  A  P  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   *  V  N  L  G  R  S  R  R  P  V  A  P  L  F  A  I  S  F  P  Q  K  R  E  D  T  E  R  *  *  E  Q  V  S  I  Y  I  H  T  Q  G  L  T  *  D  P  T  E  H  T  L  C  R  E  N  S  L  R  T  S  E  P  Y  T  Y  F  D  L  L  P  K  P  I  H  S  P  P  P  P  P  P  P  P  P  Y  L  L  L  N  L  R  Q  P  S  V  R  R  S  L  S  S  L  A  T  S  V  P  Y  Q  :  R  M  L  L  R  K  W  R  M  *  C  R  L  Q  L  V  M  S  V  R  S  L  K  L  S  S  K :   E  G  I  F  L  T  L  T  F  L  K  V  L  L  V  Q  R :   K  R  L  L  L  S  N  P  T  M  I  E  E  L  *  D  A  L  E  M  K  E  :  K  M  S  M  M  L  F  G  S  G  S  R  R  A  S  H  M  N  A  Q  Y  A  H  S  I  L  C :   W  K  W  L  D  L  E  D  L  L  M  D  M  A  V  M  M  R  V  I  I  D  S  P  S  C  N  F  L  S  E  *  F  W  *  K  K  *  K  I  P  P  F  I  N  *  E  F  Q  S  L  V  L  S  L  P  L  P  D  N  C  F  F  F  F  C  W  G  K  P :   E  D  G  W  G  G  P  H  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55421" stop="55604"/>
                    <exon start="55781" stop="55860"/>
                    <exon start="55967" stop="56017"/>
                    <exon start="61189" stop="61255"/>
                    <exon start="61377" stop="61456"/>
                    <exon start="63299" stop="63364"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THTMSRKLSSHLRTLHLLRSTPKTNSFAAAAAATTSVSSSQSPAAFRSSVTFFPRHFSTVSENVVKKVEDVMPIATGHEREELEAELQGRDILDINFPEGPFGTKEAPAVVKSYYDRRVVGCPGDEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHGSDDEGHH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63433" stop="63508"/>
                    <exon start="63568" stop="63683"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TENSKAWFFLCLYRIIVSFSFAGENQKMGGGGPIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="55276" e_stop="55604"/>
            <exon e_start="55781" e_stop="55860"/>
            <exon e_start="55967" e_stop="56017"/>
            <exon e_start="61189" e_stop="61255"/>
            <exon e_start="61377" e_stop="61456"/>
            <exon e_start="63299" e_stop="63466"/>
            <exon e_start="63547" e_stop="63566"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.910"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55276" e_stop="55604" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55781" e_stop="55860" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55967" e_stop="56017" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61189" e_stop="61255" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="61256" i_stop="61376" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61377" e_stop="61456" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61457" i_stop="63298" i_length="1842"/>
          </intron>
          <exon e_serial="6" e_score="0.910">
            <gDNA_exon_boundary e_start="63299" e_stop="63466" e_length="168"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63467" i_stop="63546" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.950">
            <gDNA_exon_boundary e_start="63547" e_stop="63566" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55276" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55278" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55279" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55279" stop="55503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55284" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="55997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55315" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55343" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63466"/>
              <exon start="63547" stop="63566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55368" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55368" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55369" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55375" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55407" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55452" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55468" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55980" stop="56017"/>
              <exon start="61189" stop="61255"/>
              <exon start="61377" stop="61456"/>
              <exon start="63299" stop="63444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305790" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTGAGTCAACCTTGGCCGAAGCCGCCGGCCAGTGGCACCCTTATTTGCCATTTCATTTCCACAAAAAAGAGAAGATACAGAGCGTTGATAAGAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG : AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA : GGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG : GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAG : AAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTG : TTGGAAGTGGTTGGACCTGGAGGACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATAGTCCGTCTTGCAATTTTTTGTCGGAATAATTTTGGTGAAAAAAATAGAAAATTCCTCCTTTTATAAACTGAGAATTCCAAAGCTTGGTTCTTTCTTTGCC : TTTAAAAAAAAAAAAAAACA</gDNA_template>
            <first_frame> S  E  S  T  L  A  E  A  A  G  Q  W  H  P  Y  L  P  F  H  F  H  K  K  E  K  I  Q  S  V  D  K  N  K  S  P  S  I  Y  T  H  R  G  *  P  E  I  Q  L  N  T  H  Y  V  E  K  T  L  F  A  P  P  N  P  T  P  T  S  I  Y  S  Q  N  Q  F  I  R  R  R  R  R  R  H  H  L  R  I  F  F  S  I  S  G  S  L  P  F  V  G  H  F  L  P  S  P  L  Q  Y  R  I  R :   E  C  C  *  E  S  G  G  C  N  A  D  C  N  W  S  *  A  *  G  A  *  S  *  A  P   : R  K  G  Y  S  *  H  *  L  S  *  R  S  F  W  Y  K   : G  S  A  C  C  C  Q  I  L  L  *  *  K  S  C  R  M  P  W  R  *  R  R :   R  *  A  *  C  C  L  V  L  A  R  E  G  Q  A  T  *  M  P  S  M  L  T  V  F  C   : V  G  S  G  W  T  W  R  T  S  *  W  T  W  Q  *  *  *  G  S  S  L  I  V  R  L  A  I  F  C  R  N  N  F  G  E  K  N  R  K  F  L  L  L  *  T  E  N  S  K  A  W  F  F  L  C   : L  *  K  K  K  K  T </first_frame>
            <second_frame>  V  S  Q  P  W  P  K  P  P  A  S  G  T  L  I  C  H  F  I  S  T  K  K  R  R  Y  R  A  L  I  R  T  S  L  H  L  Y  T  H  T  G  A  D  L  R  S  N  *  T  H  T  M  S  R  K  L  S  S  H  L  R  T  L  H  L  L  R  S  T  P  K  T  N  S  F  A  A  A  A  A  A  T  T  S  V  S  S  S  Q  S  P  A  A  F  R  S  S  V  T  F  F  P  R  H  F  S  T  V  S   : E  N  V  V  K  K  V  E  D  V  M  P  I  A  T  G  H  E  R  E  E  L  E  A  E  L  Q  :  G  R  D  I  L  D  I  N  F  P  E  G  P  F  G  T  K  :  E  A  P  A  V  V  K  S  Y  Y  D  R  R  V  V  G  C  P  G  D  E  G   : E  D  E  H  D  V  V  W  F  W  L  E  K  G  K  P  H  E  C  P  V  C  S  Q  Y  F  V  :  L  E  V  V  G  P  G  G  P  P  D  G  H  G  S  D  D  E  G  H  H  *  *  S  V  L  Q  F  F  V  G  I  I  L  V  K  K  I  E  N  S  S  F  Y  K  L  R  I  P  K  L  G  S  F  F  A  :  F  K  K  K  K  K   </second_frame>
            <third_frame>   *  V  N  L  G  R  S  R  R  P  V  A  P  L  F  A  I  S  F  P  Q  K  R  E  D  T  E  R  *  *  E  Q  V  S  I  Y  I  H  T  Q  G  L  T  *  D  P  T  E  H  T  L  C  R  E  N  S  L  R  T  S  E  P  Y  T  Y  F  D  L  L  P  K  P  I  H  S  P  P  P  P  P  P  P  P  P  Y  L  L  L  N  L  R  Q  P  S  V  R  R  S  L  S  S  L  A  T  S  V  P  Y  Q  :  R  M  L  L  R  K  W  R  M  *  C  R  L  Q  L  V  M  S  V  R  S  L  K  L  S  S  K :   E  G  I  F  L  T  L  T  F  L  K  V  L  L  V  Q  R :   K  R  L  L  L  S  N  P  T  M  I  E  E  L  *  D  A  L  E  M  K  E  :  K  M  S  M  M  L  F  G  S  G  S  R  R  A  S  H  M  N  A  Q  Y  A  H  S  I  L  C :   W  K  W  L  D  L  E  D  L  L  M  D  M  A  V  M  M  R  V  I  I  D  S  P  S  C  N  F  L  S  E  *  F  W  *  K  K  *  K  I  P  P  F  I  N  *  E  F  Q  S  L  V  L  S  L  P :   L  K  K  K  K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55421" stop="55604"/>
                    <exon start="55781" stop="55860"/>
                    <exon start="55967" stop="56017"/>
                    <exon start="61189" stop="61255"/>
                    <exon start="61377" stop="61456"/>
                    <exon start="63299" stop="63364"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THTMSRKLSSHLRTLHLLRSTPKTNSFAAAAAATTSVSSSQSPAAFRSSVTFFPRHFSTVSENVVKKVEDVMPIATGHEREELEAELQGRDILDINFPEGPFGTKEAPAVVKSYYDRRVVGCPGDEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHGSDDEGHH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="55279" e_stop="55604"/>
            <exon e_start="55781" e_stop="55860"/>
            <exon e_start="55967" e_stop="56017"/>
            <exon e_start="61189" e_stop="61595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.997"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="55279" e_stop="55604" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55605" i_stop="55780" i_length="176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55781" e_stop="55860" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55861" i_stop="55966" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55967" e_stop="56017" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56018" i_stop="61188" i_length="5171"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="61189" e_stop="61595" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55279" stop="55503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55284" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="55997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55407" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55452" stop="55604"/>
              <exon start="55781" stop="55860"/>
              <exon start="55967" stop="56017"/>
              <exon start="61189" stop="61224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301036" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTCAACCTTGGCCGAAGCCGCCGGCCAGTGGCACCCTTATTTGCCATTTCATTTCCACAAAAAAGAGAAGATACAGAGCGTTGATAAGAACAAGTCTCCATCTATATACACACACAGGGGCTGACCTGAGATCCAACTGAACACACACTATGTCGAGAAAACTCTCTTCGCACCTCCGAACCCTACACCTACTTCGATCTACTCCCAAAACCAATTCATTCGCCGCCGCCGCCGCCGCCACCACCTCCGTATCTTCTTCTCAATCTCCGGCAGCCTTCCGTTCGTCGGTCACTTTCTTCCCTCGCCACTTCAGTACCGTATCAG : AGAATGTTGTTAAGAAAGTGGAGGATGTAATGCCGATTGCAACTGGTCATGAGCGTGAGGAGCTTGAAGCTGAGCTCCAA : GGAAGGGATATTCTTGACATTAACTTTCCTGAAGGTCCTTTTGGTACAAAG : GAAGCGCCTGCTGTTGTCAAATCCTACTATGATAGAAGAGTTGTAGGATGCCCTGGAGATGAAGGAGGTAAGTTTCCATTATTTATTTGACAAGTCTCCATCATACATTAATTCCTTTAGTCAGTTGACTTCAATCTTTAGTTGGTTTCTAGTCATGTCCTCTTTCATTTTCTATTCTAATTCAACAGAAGATGAGCATGATGTTGTTTGGTTCTGGCTCGAGAAGGGCAAGCCACATGAATGCCCAGTATGCTCACAGTATTTTGTGGTAAGTACAGGATATCAATTAATTCATAGTTAGTCCTGTGGTTTGTTATTGATTAAATCTAGGTGAGTTTGTAGGCTGTTGAGGAATTTGCTAGACATGAATCTGTACTCCCTGCTTTTCTAAATCTAGGTTAATTTTG</gDNA_template>
            <first_frame> E  S  T  L  A  E  A  A  G  Q  W  H  P  Y  L  P  F  H  F  H  K  K  E  K  I  Q  S  V  D  K  N  K  S  P  S  I  Y  T  H  R  G  *  P  E  I  Q  L  N  T  H  Y  V  E  K  T  L  F  A  P  P  N  P  T  P  T  S  I  Y  S  Q  N  Q  F  I  R  R  R  R  R  R  H  H  L  R  I  F  F  S  I  S  G  S  L  P  F  V  G  H  F  L  P  S  P  L  Q  Y  R  I  R :   E  C  C  *  E  S  G  G  C  N  A  D  C  N  W  S  *  A  *  G  A  *  S  *  A  P   : R  K  G  Y  S  *  H  *  L  S  *  R  S  F  W  Y  K   : G  S  A  C  C  C  Q  I  L  L  *  *  K  S  C  R  M  P  W  R  *  R  R  *  V  S  I  I  Y  L  T  S  L  H  H  T  L  I  P  L  V  S  *  L  Q  S  L  V  G  F  *  S  C  P  L  S  F  S  I  L  I  Q  Q  K  M  S  M  M  L  F  G  S  G  S  R  R  A  S  H  M  N  A  Q  Y  A  H  S  I  L  W  *  V  Q  D  I  N  *  F  I  V  S  P  V  V  C  Y  *  L  N  L  G  E  F  V  G  C  *  G  I  C  *  T  *  I  C  T  P  C  F  S  K  S  R  L  I  L </first_frame>
            <second_frame>  S  Q  P  W  P  K  P  P  A  S  G  T  L  I  C  H  F  I  S  T  K  K  R  R  Y  R  A  L  I  R  T  S  L  H  L  Y  T  H  T  G  A  D  L  R  S  N  *  T  H  T  M  S  R  K  L  S  S  H  L  R  T  L  H  L  L  R  S  T  P  K  T  N  S  F  A  A  A  A  A  A  T  T  S  V  S  S  S  Q  S  P  A  A  F  R  S  S  V  T  F  F  P  R  H  F  S  T  V  S   : E  N  V  V  K  K  V  E  D  V  M  P  I  A  T  G  H  E  R  E  E  L  E  A  E  L  Q  :  G  R  D  I  L  D  I  N  F  P  E  G  P  F  G  T  K  :  E  A  P  A  V  V  K  S  Y  Y  D  R  R  V  V  G  C  P  G  D  E  G  G  K  F  P  L  F  I  *  Q  V  S  I  I  H  *  F  L  *  S  V  D  F  N  L  *  L  V  S  S  H  V  L  F  H  F  L  F  *  F  N  R  R  *  A  *  C  C  L  V  L  A  R  E  G  Q  A  T  *  M  P  S  M  L  T  V  F  C  G  K  Y  R  I  S  I  N  S  *  L  V  L  W  F  V  I  D  *  I  *  V  S  L  *  A  V  E  E  F  A  R  H  E  S  V  L  P  A  F  L  N  L  G  *  F   </second_frame>
            <third_frame>   V  N  L  G  R  S  R  R  P  V  A  P  L  F  A  I  S  F  P  Q  K  R  E  D  T  E  R  *  *  E  Q  V  S  I  Y  I  H  T  Q  G  L  T  *  D  P  T  E  H  T  L  C  R  E  N  S  L  R  T  S  E  P  Y  T  Y  F  D  L  L  P  K  P  I  H  S  P  P  P  P  P  P  P  P  P  Y  L  L  L  N  L  R  Q  P  S  V  R  R  S  L  S  S  L  A  T  S  V  P  Y  Q  :  R  M  L  L  R  K  W  R  M  *  C  R  L  Q  L  V  M  S  V  R  S  L  K  L  S  S  K :   E  G  I  F  L  T  L  T  F  L  K  V  L  L  V  Q  R :   K  R  L  L  L  S  N  P  T  M  I  E  E  L  *  D  A  L  E  M  K  E  V  S  F  H  Y  L  F  D  K  S  P  S  Y  I  N  S  F  S  Q  L  T  S  I  F  S  W  F  L  V  M  S  S  F  I  F  Y  S  N  S  T  E  D  E  H  D  V  V  W  F  W  L  E  K  G  K  P  H  E  C  P  V  C  S  Q  Y  F  V  V  S  T  G  Y  Q  L  I  H  S  *  S  C  G  L  L  L  I  K  S  R  *  V  C  R  L  L  R  N  L  L  D  M  N  L  Y  S  L  L  F  *  I  *  V  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55421" stop="55604"/>
                    <exon start="55781" stop="55860"/>
                    <exon start="55967" stop="56017"/>
                    <exon start="61189" stop="61278"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THTMSRKLSSHLRTLHLLRSTPKTNSFAAAAAATTSVSSSQSPAAFRSSVTFFPRHFSTVSENVVKKVEDVMPIATGHEREELEAELQGRDILDINFPEGPFGTKEAPAVVKSYYDRRVVGCPGDEGGKFPLFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="64907" PGL_stop="75210"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64907" e_stop="65067"/>
            <exon e_start="65194" e_stop="65226"/>
            <exon e_start="65344" e_stop="65441"/>
            <exon e_start="69948" e_stop="70135"/>
            <exon e_start="70288" e_stop="70567"/>
            <exon e_start="70635" e_stop="70706"/>
            <exon e_start="70935" e_stop="71051"/>
            <exon e_start="71132" e_stop="71197"/>
            <exon e_start="71357" e_stop="71717"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64907" e_stop="65067" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65068" i_stop="65193" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65194" e_stop="65226" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65227" i_stop="65343" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65344" e_stop="65441" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.904">
            <gDNA_intron_boundary i_start="65442" i_stop="69947" i_length="4506"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69948" e_stop="70135" e_length="188"/>
          </exon>
          <intron i_serial="4" don_prob="0.903" acc_prob="0.975">
            <gDNA_intron_boundary i_start="70136" i_stop="70287" i_length="152"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70288" e_stop="70567" e_length="280"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70635" e_stop="70706" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70935" e_stop="71051" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="71132" e_stop="71197" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.960" acc_prob="0.988">
            <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="71357" e_stop="71717" e_length="361"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64907" stop="65067"/>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64916" stop="65067"/>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="70970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64974" stop="65067"/>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64999" stop="65067"/>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65035" stop="65067"/>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65038" stop="65067"/>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65043" stop="65067"/>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65049" stop="65067"/>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65063" stop="65067"/>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65208" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65420" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69982" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69983" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="70944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70336" stop="70486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70461" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70525" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70528" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70528" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70529" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70529" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70529" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70529" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372599" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACAAATTCCTGATTTTTTTATTCTCAAGATGCTCTGAGCCACACGCGCTTCTCCCTCTCCCACCACAATTTCTTCTCCTAAAACACGCAGTGCAGCCATTGCAGCGCTACACCATTTTCCTCTGCATAGTGTCCTCTCTCACAGTCTCGTCAGATAATGA : GTTTCGGAAAGAAGATCAGGATAGGGCTCGATG : GGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCAAGCACTGTGCTTAAGACTTCCACCTTTAAG : CATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTC : GATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG : GCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCG : ATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAA : ATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTG : ATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGATTTCATTCAAATCACACTACGTGAACTAATAGTAAGCGTTTCCTTTTGTGTACTGTATGTGATGGGGGCACAAGGAATACTGATATTATTGCCCAATGATTTGAATTATCAGTGTTATAATATACAATGTAGACTCTAGACAATAGATCAGCCACTTGGAGCTATTCTTTTGAGGGGAAAATAAATAGCCGATGTACTATTTACAGTATTGTCTATAATAAATCTTTGTTATAGGAATTCCAAG</gDNA_template>
            <first_frame> D  K  F  L  I  F  L  F  S  R  C  S  E  P  H  A  L  L  P  L  P  P  Q  F  L  L  L  K  H  A  V  Q  P  L  Q  R  Y  T  I  F  L  C  I  V  S  S  L  T  V  S  S  D  N  E :   F  R  K  E  D  Q  D  R  A  R  W :   V  W  K  N  *  S  F  H  R  E  S  S  S  Q  R  R  K  Q  A  F  K  C  K  H  C  A  *  D  F  H  L  *   : A  *  L  R  W  F  W  I  C  W  V  K  V  F  Q  S  I  C  S  G  W  C  W  N  L  W  A  T  *  L  C  R  S  C  L  F  *  *  G  R  T  W  L  R  V  S  E  L  S  L  A  S  R  R  H  S  Q  L  L  *  P  C  F  :  D  T  S  R  S  S  G  L  P  A  S  V  C  V  L  P  L  N  V  A  N  F  L  P  *  S  C  W  C  C  I  H  *  R  R  N  *  G  H  G  S  R  N  *  G  G  *  W  P  *  *  *  G  *  D  V  H  P  P  W  E  V  E  *  S  F  S  T  A  L  P  K  *  S  S  C  K  V  C  K  W  W  G  L  S  S  *  S  K  S  Y  H  *   : G  P  A  *  R  S  K  L  C  F  C  S  S  N  W  L  P  G  P  S  C  W  C  L   : D  S  G  R  S  S  L  *  P  L  L  P  W  W  S  Y  S  N  A  *  N  A  *  *  W  C  C  *  V  *  R  W  Y  T  C  N  *  G  T   : N  G  K  R  C  C  V  V  L  V  M  G  C  *  A  R  N  G  R  E  K  A   : D  G  F  Q  M  D  I  R  L  I  T  C  T  S  P  S  S  L  L  P  S  P  E  M  V  C  P  E  I  S  Q  I  G  P  R  C  C  Q  L  I  S  F  K  S  H  Y  V  N  *  *  *  A  F  P  F  V  Y  C  M  *  W  G  H  K  E  Y  *  Y  Y  C  P  M  I  *  I  I  S  V  I  I  Y  N  V  D  S  R  Q  *  I  S  H  L  E  L  F  F  *  G  E  N  K  *  P  M  Y  Y  L  Q  Y  C  L  *  *  I  F  V  I  G  I  P   </first_frame>
            <second_frame>  T  N  S  *  F  F  Y  S  Q  D  A  L  S  H  T  R  F  S  L  S  H  H  N  F  F  S  *  N  T  Q  C  S  H  C  S  A  T  P  F  S  S  A  *  C  P  L  S  Q  S  R  Q  I  M   : S  F  G  K  K  I  R  I  G  L  D   : G  F  G  R  I  N  R  F  I  A  R  A  A  H  R  D  E  N  K  L  S  N  A  S  T  V  L  K  T  S  T  F  K  :  H  D  S  D  G  F  G  S  A  G  L  K  S  F  R  A  F  A  V  V  G  A  G  I  S  G  L  L  S  F  A  G  V  A  Y  S  D  E  A  E  H  G  L  E  C  P  S  Y  P  W  P  H  E  G  I  L  S  S  Y  D  H  A  S :   I  R  R  G  H  Q  V  Y  Q  Q  V  C  A  S  C  H  S  M  S  L  I  S  Y  R  D  L  V  G  V  A  Y  T  E  E  E  T  K  A  M  A  A  E  I  E  V  V  D  G  P  N  D  E  G  E  M  F  T  R  P  G  K  L  S  D  R  F  P  Q  P  Y  P  N  E  A  A  A  R  F  A  N  G  G  A  Y  P  P  D  L  S  L  I  T  K  :  A  R  H  N  G  Q  N  Y  V  F  A  L  L  T  G  Y  R  D  P  P  A  G  V  S  :  I  R  E  G  L  H  Y  N  P  Y  F  P  G  G  A  I  A  M  P  K  M  L  N  D  G  A  V  E  Y  E  D  G  I  P  A  T  E  A  Q  :  M  G  K  D  V  V  S  F  L  S  W  A  A  E  P  E  M  E  E  R  K  L  :  M  G  F  K  W  I  F  V  L  S  L  A  L  L  Q  A  A  Y  Y  R  R  L  R  W  S  V  L  K  S  R  K  L  V  L  D  V  V  N  *  F  H  S  N  H  T  T  *  T  N  S  K  R  F  L  L  C  T  V  C  D  G  G  T  R  N  T  D  I  I  A  Q  *  F  E  L  S  V  L  *  Y  T  M  *  T  L  D  N  R  S  A  T  W  S  Y  S  F  E  G  K  I  N  S  R  C  T  I  Y  S  I  V  Y  N  K  S  L  L  *  E  F  Q  </second_frame>
            <third_frame>   Q  I  P  D  F  F  I  L  K  M  L  *  A  T  R  A  S  P  S  P  T  T  I  S  S  P  K  T  R  S  A  A  I  A  A  L  H  H  F  P  L  H  S  V  L  S  H  S  L  V  R  *  *  :  V  S  E  R  R  S  G  *  G  S  M  :  G  L  E  E  L  I  V  S  S  R  E  Q  L  T  E  T  K  T  S  F  Q  M  Q  A  L  C  L  R  L  P  P  L  S :   M  T  Q  M  V  L  D  L  L  G  *  S  L  S  E  H  L  Q  W  L  V  L  E  S  L  G  Y  L  A  L  Q  E  L  L  I  L  M  R  P  N  M  A  *  S  V  R  A  I  L  G  L  T  K  A  F  S  A  L  M  T  M  L   : R  Y  V  E  V  I  R  F  T  S  K  C  V  R  P  A  T  Q  C  R  *  F  P  T  V  I  L  L  V  L  H  T  L  K  K  K  L  R  P  W  Q  Q  K  L  R  W  L  M  A  L  M  M  R  V  R  C  S  P  A  L  G  S  *  V  I  V  F  H  S  L  T  Q  M  K  Q  L  Q  G  L  Q  M  V  G  L  I  L  L  I  *  V  L  S  L  R :   P  G  I  T  V  K  T  M  F  L  L  F  *  L  A  T  G  T  L  L  L  V  S  R :   F  G  K  V  F  T  I  T  L  T  S  L  V  E  L  *  Q  C  L  K  C  L  M  M  V  L  L  S  M  K  M  V  Y  L  Q  L  R  H  K :   W  E  K  M  L  C  R  S  C  H  G  L  L  S  Q  K  W  K  R  E  S  * :   W  V  S  N  G  Y  S  S  Y  H  L  H  F  S  K  Q  L  T  T  V  A  *  D  G  L  S  *  N  L  A  N  W  S  S  M  L  S  T  D  F  I  Q  I  T  L  R  E  L  I  V  S  V  S  F  C  V  L  Y  V  M  G  A  Q  G  I  L  I  L  L  P  N  D  L  N  Y  Q  C  Y  N  I  Q  C  R  L  *  T  I  D  Q  P  L  G  A  I  L  L  R  G  K  *  I  A  D  V  L  F  T  V  L  S  I  I  N  L  C  Y  R  N  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65037" stop="65067"/>
                    <exon start="65194" stop="65226"/>
                    <exon start="65344" stop="65441"/>
                    <exon start="69948" stop="70135"/>
                    <exon start="70288" stop="70567"/>
                    <exon start="70635" stop="70706"/>
                    <exon start="70935" stop="71051"/>
                    <exon start="71132" stop="71197"/>
                    <exon start="71357" stop="71473"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CPLSQSRQIMSFGKKIRIGLDGFGRINRFIARAAHRDENKLSNASTVLKTSTFKHDSDGFGSAGLKSFRAFAVVGAGISGLLSFAGVAYSDEAEHGLECPSYPWPHEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYPNEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGIPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="64916" e_stop="65067"/>
            <exon e_start="65194" e_stop="65226"/>
            <exon e_start="65344" e_stop="65441"/>
            <exon e_start="69948" e_stop="70135"/>
            <exon e_start="70288" e_stop="70567"/>
            <exon e_start="70635" e_stop="70706"/>
            <exon e_start="70935" e_stop="71051"/>
            <exon e_start="71132" e_stop="71197"/>
            <exon e_start="71357" e_stop="71694"/>
            <exon e_start="75130" e_stop="75210"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.904" e_score="0.990"/>
          <exon-intron don_prob="0.903" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64916" e_stop="65067" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65068" i_stop="65193" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65194" e_stop="65226" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65227" i_stop="65343" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="65344" e_stop="65441" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.904">
            <gDNA_intron_boundary i_start="65442" i_stop="69947" i_length="4506"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69948" e_stop="70135" e_length="188"/>
          </exon>
          <intron i_serial="4" don_prob="0.903" acc_prob="0.975">
            <gDNA_intron_boundary i_start="70136" i_stop="70287" i_length="152"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70288" e_stop="70567" e_length="280"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="70568" i_stop="70634" i_length="67"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70635" e_stop="70706" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="70707" i_stop="70934" i_length="228"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70935" e_stop="71051" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71052" i_stop="71131" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="71132" e_stop="71197" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.960" acc_prob="0.988">
            <gDNA_intron_boundary i_start="71198" i_stop="71356" i_length="159"/>
          </intron>
          <exon e_serial="9" e_score="0.988">
            <gDNA_exon_boundary e_start="71357" e_stop="71694" e_length="338"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71695" i_stop="75129" i_length="3435"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="75130" e_stop="75210" e_length="81"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64916" stop="65067"/>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="70970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64974" stop="65067"/>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64999" stop="65067"/>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
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              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65035" stop="65067"/>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65038" stop="65067"/>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65043" stop="65067"/>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
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              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65049" stop="65067"/>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65063" stop="65067"/>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65194" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
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              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65208" stop="65226"/>
              <exon start="65344" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
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              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65420" stop="65441"/>
              <exon start="69948" stop="70135"/>
              <exon start="70288" stop="70567"/>
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              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69982" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69983" stop="70135"/>
              <exon start="70288" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="70944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70336" stop="70486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70528" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70528" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70529" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70529" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70529" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70529" stop="70567"/>
              <exon start="70635" stop="70706"/>
              <exon start="70935" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70939" stop="71051"/>
              <exon start="71132" stop="71197"/>
              <exon start="71357" stop="71694"/>
              <exon start="75130" stop="75210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGATTTTTTTATTCTCAAGATGCTCTGAGCCACACGCGCTTCTCCCTCTCCCACCACAATTTCTTCTCCTAAAACACGCAGTGCAGCCATTGCAGCGCTACACCATTTTCCTCTGCATAGTGTCCTCTCTCACAGTCTCGTCAGATAATGA : GTTTCGGAAAGAAGATCAGGATAGGGCTCGATG : GGTTTGGAAGAATTAATCGTTTCATCGCGAGAGCAGCTCACAGAGACGAAAACAAGCTTTCAAATGCAAGCACTGTGCTTAAGACTTCCACCTTTAAG : CATGACTCAGATGGTTTTGGATCTGCTGGGTTAAAGTCTTTCAGAGCATTTGCAGTGGTTGGTGCTGGAATCTCTGGGCTACTTAGCTTTGCAGGAGTTGCTTATTCTGATGAGGCCGAACATGGCTTAGAGTGTCCGAGCTATCCTTGGCCTCACGAAGGCATTCTCAGCTCTTATGACCATGCTTC : GATACGTCGAGGTCATCAGGTTTACCAGCAAGTGTGTGCGTCCTGCCACTCAATGTCGCTAATTTCCTACCGTGATCTTGTTGGTGTTGCATACACTGAAGAAGAAACTAAGGCCATGGCAGCAGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGGAAGTTGAGTGATCGTTTTCCACAGCCTTACCCAAATGAAGCAGCTGCAAGGTTTGCAAATGGTGGGGCTTATCCTCCTGATCTAAGTCTTATCACTAAG : GCCCGGCATAACGGTCAAAACTATGTTTTTGCTCTTCTAACTGGCTACCGGGACCCTCCTGCTGGTGTCTCG : ATTCGGGAAGGTCTTCACTATAACCCTTACTTCCCTGGTGGAGCTATAGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTATACCTGCAACTGAGGCACAA : ATGGGAAAAGATGTTGTGTCGTTCTTGTCATGGGCTGCTGAGCCAGAAATGGAAGAGAGAAAGCTG : ATGGGTTTCAAATGGATATTCGTCTTATCACTTGCACTTCTCCAAGCAGCTTACTACCGTCGCCTGAGATGGTCTGTCCTGAAATCTCGCAAATTGGTCCTCGATGTTGTCAACTGATTTCATTCAAATCACACTACGTGAACTAATAGTAAGCGTTTCCTTTTGTGTACTGTATGTGATGGGGGCACAAGGAATACTGATATTATTGCCCAATGATTTGAATTATCAGTGTTATAATATACAATGTAGACTCTAGACAATAGATCAGCCACTTGGAGCTATTCTTTTGAGGGGAAAATAAATAGCCGATGTACTATTTACAGTATTGTCTATAATAA : AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> L  I  F  L  F  S  R  C  S  E  P  H  A  L  L  P  L  P  P  Q  F  L  L  L  K  H  A  V  Q  P  L  Q  R  Y  T  I  F  L  C  I  V  S  S  L  T  V  S  S  D  N  E :   F  R  K  E  D  Q  D  R  A  R  W :   V  W  K  N  *  S  F  H  R  E  S  S  S  Q  R  R  K  Q  A  F  K  C  K  H  C  A  *  D  F  H  L  *   : A  *  L  R  W  F  W  I  C  W  V  K  V  F  Q  S  I  C  S  G  W  C  W  N  L  W  A  T  *  L  C  R  S  C  L  F  *  *  G  R  T  W  L  R  V  S  E  L  S  L  A  S  R  R  H  S  Q  L  L  *  P  C  F  :  D  T  S  R  S  S  G  L  P  A  S  V  C  V  L  P  L  N  V  A  N  F  L  P  *  S  C  W  C  C  I  H  *  R  R  N  *  G  H  G  S  R  N  *  G  G  *  W  P  *  *  *  G  *  D  V  H  P  P  W  E  V  E  *  S  F  S  T  A  L  P  K  *  S  S  C  K  V  C  K  W  W  G  L  S  S  *  S  K  S  Y  H  *   : G  P  A  *  R  S  K  L  C  F  C  S  S  N  W  L  P  G  P  S  C  W  C  L   : D  S  G  R  S  S  L  *  P  L  L  P  W  W  S  Y  S  N  A  *  N  A  *  *  W  C  C  *  V  *  R  W  Y  T  C  N  *  G  T   : N  G  K  R  C  C  V  V  L  V  M  G  C  *  A  R  N  G  R  E  K  A   : D  G  F  Q  M  D  I  R  L  I  T  C  T  S  P  S  S  L  L  P  S  P  E  M  V  C  P  E  I  S  Q  I  G  P  R  C  C  Q  L  I  S  F  K  S  H  Y  V  N  *  *  *  A  F  P  F  V  Y  C  M  *  W  G  H  K  E  Y  *  Y  Y  C  P  M  I  *  I  I  S  V  I  I  Y  N  V  D  S  R  Q  *  I  S  H  L  E  L  F  F  *  G  E  N  K  *  P  M  Y  Y  L  Q  Y  C  L  *  *  :  N  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  *  F  F  Y  S  Q  D  A  L  S  H  T  R  F  S  L  S  H  H  N  F  F  S  *  N  T  Q  C  S  H  C  S  A  T  P  F  S  S  A  *  C  P  L  S  Q  S  R  Q  I  M   : S  F  G  K  K  I  R  I  G  L  D   : G  F  G  R  I  N  R  F  I  A  R  A  A  H  R  D  E  N  K  L  S  N  A  S  T  V  L  K  T  S  T  F  K  :  H  D  S  D  G  F  G  S  A  G  L  K  S  F  R  A  F  A  V  V  G  A  G  I  S  G  L  L  S  F  A  G  V  A  Y  S  D  E  A  E  H  G  L  E  C  P  S  Y  P  W  P  H  E  G  I  L  S  S  Y  D  H  A  S :   I  R  R  G  H  Q  V  Y  Q  Q  V  C  A  S  C  H  S  M  S  L  I  S  Y  R  D  L  V  G  V  A  Y  T  E  E  E  T  K  A  M  A  A  E  I  E  V  V  D  G  P  N  D  E  G  E  M  F  T  R  P  G  K  L  S  D  R  F  P  Q  P  Y  P  N  E  A  A  A  R  F  A  N  G  G  A  Y  P  P  D  L  S  L  I  T  K  :  A  R  H  N  G  Q  N  Y  V  F  A  L  L  T  G  Y  R  D  P  P  A  G  V  S  :  I  R  E  G  L  H  Y  N  P  Y  F  P  G  G  A  I  A  M  P  K  M  L  N  D  G  A  V  E  Y  E  D  G  I  P  A  T  E  A  Q  :  M  G  K  D  V  V  S  F  L  S  W  A  A  E  P  E  M  E  E  R  K  L  :  M  G  F  K  W  I  F  V  L  S  L  A  L  L  Q  A  A  Y  Y  R  R  L  R  W  S  V  L  K  S  R  K  L  V  L  D  V  V  N  *  F  H  S  N  H  T  T  *  T  N  S  K  R  F  L  L  C  T  V  C  D  G  G  T  R  N  T  D  I  I  A  Q  *  F  E  L  S  V  L  *  Y  T  M  *  T  L  D  N  R  S  A  T  W  S  Y  S  F  E  G  K  I  N  S  R  C  T  I  Y  S  I  V  Y  N  K :   I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   D  F  F  I  L  K  M  L  *  A  T  R  A  S  P  S  P  T  T  I  S  S  P  K  T  R  S  A  A  I  A  A  L  H  H  F  P  L  H  S  V  L  S  H  S  L  V  R  *  *  :  V  S  E  R  R  S  G  *  G  S  M  :  G  L  E  E  L  I  V  S  S  R  E  Q  L  T  E  T  K  T  S  F  Q  M  Q  A  L  C  L  R  L  P  P  L  S :   M  T  Q  M  V  L  D  L  L  G  *  S  L  S  E  H  L  Q  W  L  V  L  E  S  L  G  Y  L  A  L  Q  E  L  L  I  L  M  R  P  N  M  A  *  S  V  R  A  I  L  G  L  T  K  A  F  S  A  L  M  T  M  L   : R  Y  V  E  V  I  R  F  T  S  K  C  V  R  P  A  T  Q  C  R  *  F  P  T  V  I  L  L  V  L  H  T  L  K  K  K  L  R  P  W  Q  Q  K  L  R  W  L  M  A  L  M  M  R  V  R  C  S  P  A  L  G  S  *  V  I  V  F  H  S  L  T  Q  M  K  Q  L  Q  G  L  Q  M  V  G  L  I  L  L  I  *  V  L  S  L  R :   P  G  I  T  V  K  T  M  F  L  L  F  *  L  A  T  G  T  L  L  L  V  S  R :   F  G  K  V  F  T  I  T  L  T  S  L  V  E  L  *  Q  C  L  K  C  L  M  M  V  L  L  S  M  K  M  V  Y  L  Q  L  R  H  K :   W  E  K  M  L  C  R  S  C  H  G  L  L  S  Q  K  W  K  R  E  S  * :   W  V  S  N  G  Y  S  S  Y  H  L  H  F  S  K  Q  L  T  T  V  A  *  D  G  L  S  *  N  L  A  N  W  S  S  M  L  S  T  D  F  I  Q  I  T  L  R  E  L  I  V  S  V  S  F  C  V  L  Y  V  M  G  A  Q  G  I  L  I  L  L  P  N  D  L  N  Y  Q  C  Y  N  I  Q  C  R  L  *  T  I  D  Q  P  L  G  A  I  L  L  R  G  K  *  I  A  D  V  L  F  T  V  L  S  I  I   : K  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0038P06.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65037" stop="65067"/>
                    <exon start="65194" stop="65226"/>
                    <exon start="65344" stop="65441"/>
                    <exon start="69948" stop="70135"/>
                    <exon start="70288" stop="70567"/>
                    <exon start="70635" stop="70706"/>
                    <exon start="70935" stop="71051"/>
                    <exon start="71132" stop="71197"/>
                    <exon start="71357" stop="71473"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CPLSQSRQIMSFGKKIRIGLDGFGRINRFIARAAHRDENKLSNASTVLKTSTFKHDSDGFGSAGLKSFRAFAVVGAGISGLLSFAGVAYSDEAEHGLECPSYPWPHEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYPNEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGIPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 382 chains have been computed
$ 
$ memory statistics:
$ 444520 bytes spliced alignments in total
$ 101 spliced alignments have been stored
$ 4401 bytes was the average size of a spliced alignment
$ 28208 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1567 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 462 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-28 10:23:56
-->
