<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 23:36:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U564903" ref_strand="+" ref_description="SGN-U564903 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157342485|emb|CAO65197.1| (e_value=8e-46) unnamed; (*ATH) AT5G20740.1 (e_value=4e-38)  Symbol: None | invertase/pectin methylesterase inhibitor family protein, low similarity to pectinesterase from Arabidopsis thaliana SP:Q42534, Lycopersicon esculentum SP:Q43143; contains Pfam profile PF04043: Plant invertase/pectin methylesterase in... ; (*SWP) sp|P17407|21KD_DAUCA (e_value=6e-30) 21 kDa protein OS=Daucus carota; ">
      <seq>cgttttcttccccttctcctcctcattctccatttctctcacttcacaagtggaaaaaacacaataacttcatattccacaaatcatcttgtttacacatcttgcaccaaagcaagttaccctaaaatttgcattagaaccctctcatcatactcaaccataaaaacaccaaaagacttagcaaaagcatcactaaatgtgagtatttcaagatccaacaaagcatcaaaattcctcaaaaatctcaaagtgaatagcaaaagagaaaaaggggcacttgttgattgtatagagcaaataggtgactctatacatgagcttagaaagtcactttttgagctaaaacacttgcataaagggattggctttaggttccaaatgagtaatttggagacttggattagtgcttctttgacaaatgatgatacttgtcttgatggtttcaaagaaattgatggaaaagttaggtatgatgtgaagagaaggatttctaatgttgcaaaggttacaagtaatgctctttacctcatcaatctactgggcggattcagaatctgaaactcacgctagtcttaaagcatatttttatcatattcgagtatttttaataataaattttatgtatatctttgtttttcgngttgaaaatattgaattcagttcataaattctacttganctgtcgantcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="3840" stop="5129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4140" g_stop="4829" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-U564903" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4140" e_stop="4829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTTCTTCCCCTTCTCCTCCTCATTCTCCATTTCTCTCACTTCACAAGTGGAAAAAACACAATAACTTCATATTCCACAAATCATCTTGTTTACACATCTTGCACCAAAGCAAGTTACCCTAAAATTTGCATTAGAACCCTCTCATCATACTCAACCATAAAAACACCAAAAGACTTAGCAAAAGCATCACTAAATGTGAGTATTTCAAGATCCAACAAAGCATCAAAATTCCTCAAAAATCTCAAAGTGAATAGCAAAAGAGAAAAAGGGGCACTTGTTGATTGTATAGAGCAAATAGGTGACTCTATACATGAGCTTAGAAAGTCACTTTTTGAGCTAAAACACTTGCATAAAGGGATTGGCTTTAGGTTCCAAATGAGTAATTTGGAGACTTGGATTAGTGCTTCTTTGACAAATGATGATACTTGTCTTGATGGTTTCAAAGAAATTGATGGAAAAGTTAGGTATGATGTGAAGAGAAGGATTTCTAATGTTGCAAAGGTTACAAGTAATGCTCTTTACCTCATCAATCTACTGGGCGGATTCAGAATCTGAAACTCACGCTAGTCTTAAAGCATATTTTTATCATATTCGAGTATTTTTAATAATAAATTTTATGTATATCTTTGTTTTTCGTGTTGAAAATATTGAATTCAGTTCATAAATTCTACTTGATCTGTCGATTCG</genome_strand>
        <mrna_strand>CGTTTTCTTCCCCTTCTCCTCCTCATTCTCCATTTCTCTCACTTCACAAGTGGAAAAAACACAATAACTTCATATTCCACAAATCATCTTGTTTACACATCTTGCACCAAAGCAAGTTACCCTAAAATTTGCATTAGAACCCTCTCATCATACTCAACCATAAAAACACCAAAAGACTTAGCAAAAGCATCACTAAATGTGAGTATTTCAAGATCCAACAAAGCATCAAAATTCCTCAAAAATCTCAAAGTGAATAGCAAAAGAGAAAAAGGGGCACTTGTTGATTGTATAGAGCAAATAGGTGACTCTATACATGAGCTTAGAAAGTCACTTTTTGAGCTAAAACACTTGCATAAAGGGATTGGCTTTAGGTTCCAAATGAGTAATTTGGAGACTTGGATTAGTGCTTCTTTGACAAATGATGATACTTGTCTTGATGGTTTCAAAGAAATTGATGGAAAAGTTAGGTATGATGTGAAGAGAAGGATTTCTAATGTTGCAAAGGTTACAAGTAATGCTCTTTACCTCATCAATCTACTGGGCGGATTCAGAATCTGAAACTCACGCTAGTCTTAAAGCATATTTTTATCATATTCGAGTATTTTTAATAATAAATTTTATGTATATCTTTGTTTTTCGNGTTGAAAATATTGAATTCAGTTCATAAATTCTACTTGANCTGTCGANTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U582703" ref_strand="-" ref_description="SGN-U582703 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|56900833|gb|AAW31716.1| (e_value=4e-54) plastid beta-ketoacyl ACP synthase [Betula pendula]; (*ATH) AT1G74960.1 (e_value=6e-52)  Symbol: None | 3-ketoacyl-ACP synthase, putative, similar to 3-ketoacyl-ACP synthase (Cuphea pulcherrima) gi:3800747:gb:AAC68860; identical to cDNA beta-ketoacyl-ACP synthetase 2 nuclear gene for plastid product GI:14582700 | chr1:28156033-28159872 ... ; (*SWP) sp|P23902|KASC1_HORVU (e_value=9e-26) 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Hordeum vulgare GN=KAS12; ">
      <seq>tgactgagcctcatcctgaaggagctggtgtaatcttatgcatagaaaaggcattagctcagtctggtgtatccaaggaagatgtgaactacattaatgcgcatggcacttccacaccagcaggggatctcaaagagtaccacgcgattgtacattgttttggccagaacccagagttacgaattaactccacgaagtctatgattggtcacctgctaggagctgctggtgctgttgaagctgtagcaactattcaggcaatacgaactggatgggttcatccgaatataaatcttgataccccagatgagggtgtggatacaaatgtacttgtgggttcgaaaaaagaaagattggatattaaggtggcaatatcgaattcatttggatttggtggccataattcatcgatattatttgctccctacaagtaaatatattgtccatcccaacaaacctaaggtaaattgaattagggtccttgatttcgagttacatggagtcaaaattgccgatgacttctctagtggaagaaggtatttgtagtagccggtagataattgttggagcaagcacgtgaaagggaaaatcgcgtagaattttccttttcgatcatggctactatagcattcttggtttcgatcataagatatatataggttgatccgatatctgattcaaatccaatatagttttcaaaaattattgtatcaaaattgttgttactatagaacatttctaataatagcatactattattctcttcaaaaaaaaaaaaaaaaaactcgagatagttcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="8971" stop="5602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8671" g_stop="8651" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8650" i_stop="7999" i_length="652">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7998" g_stop="7844" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="176" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7843" i_stop="7752" i_length="92">
            <donor d_prob="0.695" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7751" g_stop="7671" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="257" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7670" i_stop="7347" i_length="324">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7346" g_stop="7287" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="317" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7286" i_stop="6812" i_length="475">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6811" g_stop="6667" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="462" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6666" i_stop="6209" i_length="458">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6208" g_stop="5902" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="771" r_length="309" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="772" polyA_stop="785"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-U582703" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582703" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8671" e_stop="8651"/>
          <exon e_start="7998" e_stop="7844"/>
          <exon e_start="7751" e_stop="7671"/>
          <exon e_start="7346" e_stop="7287"/>
          <exon e_start="6811" e_stop="6667"/>
          <exon e_start="6208" e_stop="5902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTGAGCCTCATCCTGAAGGTACTTTCTTCTCTCAATTTTTCAATTCCCCTATCCAGAAGATGGGGAAACTAGGCAGCTCCGGATACGGACTATAATATGGAGGATCCTAAGTGCAAAAATGTCTTATATAGAGTCGGACGTATTTCAACTTGTTAACCAGTCTTATTAGATTGGTATAGCAGTTTTGTTGCTTAATCTATTATCTTTTTGGGTGGCAATCAATTGTTGAGCATGCAAACATCTTTATGGATCCATCTGGCCACCCTTTTCAGTATTAACTTTTAGGTAAGGCGCAATACATAAACAAACTCTCAAACTTGGCCTCAACTAGAAAGTAAGCACTCCAATTTTGAAAATGCACATCTAGACACCTCAACTTGGTCTCAAATGGGAACTAAACATTCCAACTTGTCCCGAATGTGTCTCGTGGACACCCGATGTCAGTGTTTTACTGACACAACGGGGACGAGTTAAGGTGTCTAGATGTGAGTGCTTACATGCCAGCGGAGGCCAAGTTTTAGTGTTTGTTTATGTATTATGCCTTTAGGTAATATTGCTTTGTGTTTATTATTATTTACGAGAAAAATGCGTGATATCTTGTTTTTGTGTAATGTAGATTGAATTATAATACGGACATAACTTTATCTCTGCATTTTCCACAAATAAACAGGAGCTGGTGTTATCTTATGCATAGAGAAGGCATTAGCTCAGTCTGGTGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGGCACTTCCACACCGGCAGGGGATCTCAAAGAGTACCAAGCGATTGTACATTGTTTTGGCCAGAACCCAGAGGTTAGAGGTTCTCCGAACGACTGTTGTTTATGCCTGTTCCTTCAGTTTCCTTTTTCCAGGTACTTAATCAATTGCTACTCCACGTTTTACAGTTACGAGTGAACTCCACGAAGTCTATGATTGGTCACCTACTAGGAGCTGCTGGTGCTGTTGAAGCTGTAGCAATTATTCAGGTAACGTTGTATTTCGTATGCCTTGAAGTAGTGTTGCAACTTGACTTCTGTTGCTTTTAGTTTCTCGTTTAACAAATCGTCTACATAATTTACACGTTTACACAAACATAGAGTTACAGGGCGTGGATTCTCCTATTGCGACATGTATAGGTTATCATGCCATTTAGGTTCAATTTATCATAGATCACTCATTCTGGCTTATTTACATTAAAAAGAAAGCATGTATAGGCTATCATGCCAATTTCGAAAGATTTTCCTTTGTGCTGATCATCCTAAAGATTCTGTTGCTCGAGTCTTGACAGAGGGTTCATACGGATTTTGCAGGCAATACGAACTGGATGGGTTCATCCGAATATAAATCTTGATACCCCAGATGAGGGTGTGGTATGGCTCCCTTTTCGTTGCATTTTCAATTGTGTATTGTTCTTTTGAGCATGATCTAGTATCCTAGACTTTTATTAAACTACCAAGTCGATTGACATCACTTGCATTGGTCTTTTATCTCAAATTTTCTATTCCCTTCGTTTCAATTCGTTCGTCATACTTTCCTCTTTCAAAAAGAATGGCTCTTTCCATTTTTGGCAACTCTTGGATTTCAACTTTCCGTCTGACATGTAGGATTAAAGTACAGTCTACGTGCCTTTAGTCTAAGACCCCAAGAATCAAAATGTCTTTTTTTTTAAAACTCCGTGCCAAATCAAAATCAGGTAAACAAATTGAAACGGAGGGAGAATCATATTACAAATAAGTCTCTTATATGATATGAGGTTGAATCATCTCTTTCTTGGTTCACTGTTGCGACAATTTAGTGTTGAAAATCAACGATTTGATGATATATATATATCCATATGCATAACAGGATACAAATGTACTTGTGGGTTCGAAAAAAGAAAGATTGGATATTAAGGTGGCGATATCGAATTCTTTTGGATTTGGTGGCCATAATTCATCGATATTATTTGCTCCCTACAAGTAAATATATTGTCCATCCCAACAAACCTAAGGTATGTATGGTTGTTGATTTTGAATGTAAAGTTCAGTTATGAGTGTTATGACTTCGTAGATTGAAACAACCTGTCCTTTGCGTGTCAAGGAAGACGAAAATAATAAGCACGAAAAGAGGGCGTTTAGAGTAATTGAAGAGATTAAGACATCTCTTCTAGTCGGAGTCTGTCACTATCTGTTGTTTCTTGTACTTCGATTATCGTATTATGTTTGCTTTGTTATGCTTTCACTTTCGTTACTCTTGAACCAAAGGTCTATTAGAGACAACCTCTCTACCTCTTGAGGTAGAGTTAAGGTTTCTGTATACTCTACCTTCCTTAAACCCCGCGTTGTGAGACTACACTGGGTATGTTGTTGTTGTCGCTGCTCTCTCTCCTTCATTTTTTATCGTTTCTACGTGAAAGCACTTGTTTTGATTCTTATCTTCGTTGTAAGGATACGCTTCATTTTTTGTCAGGTAAATTGAAATAGGGTCCTTGATTTCGAGTTACATGGAGTCAAAATTGACGATGACTTCTCTAGTGGAAGAAGGTATTTGTAGTAACCGGTAGATAATTGTTGGAGCAAGCACGTGAAAGGGAAAATCGCGTAGGATTTTCCTTTTCGATCATGGCTACTATAGCATTCTTGGTTTCGATCAT-A-ATATATATAGATTGATCCGATATCTGATTCAAATCCAATATAGTTTTCAAAAATTATTGTATCAAAATTGTTGTTACTATAGAACATTTCTAATAATAGCATACTATTATTCTCTTCAAAAA</genome_strand>
        <mrna_strand>TGACTGAGCCTCATCCTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGGTGTAATCTTATGCATAGAAAAGGCATTAGCTCAGTCTGGTGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGGCACTTCCACACCAGCAGGGGATCTCAAAGAGTACCACGCGATTGTACATTGTTTTGGCCAGAACCCAGAG............................................................................................TTACGAATTAACTCCACGAAGTCTATGATTGGTCACCTGCTAGGAGCTGCTGGTGCTGTTGAAGCTGTAGCAACTATTCAG....................................................................................................................................................................................................................................................................................................................................GCAATACGAACTGGATGGGTTCATCCGAATATAAATCTTGATACCCCAGATGAGGGTGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAAATGTACTTGTGGGTTCGAAAAAAGAAAGATTGGATATTAAGGTGGCAATATCGAATTCATTTGGATTTGGTGGCCATAATTCATCGATATTATTTGCTCCCTACAAGTAAATATATTGTCCATCCCAACAAACCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATTGAATTAGGGTCCTTGATTTCGAGTTACATGGAGTCAAAATTGCCGATGACTTCTCTAGTGGAAGAAGGTATTTGTAGTAGCCGGTAGATAATTGTTGGAGCAAGCACGTGAAAGGGAAAATCGCGTAGAATTTTCCTTTTCGATCATGGCTACTATAGCATTCTTGGTTTCGATCATAAGATATATATAGGTTGATCCGATATCTGATTCAAATCCAATATAGTTTTCAAAAATTATTGTATCAAAATTGTTGTTACTATAGAACATTTCTAATAATAGCATACTATTATTCTCTTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U564581" ref_strand="+" ref_description="SGN-U564581 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|2921211|gb|AAC04692.1| (e_value=1e-41) beta-ketoacyl-ACP synthase II [Perilla frutescens]; (*ATH) AT1G74960.1 (e_value=3e-37)  Symbol: None | 3-ketoacyl-ACP synthase, putative, similar to 3-ketoacyl-ACP synthase (Cuphea pulcherrima) gi:3800747:gb:AAC68860; identical to cDNA beta-ketoacyl-ACP synthetase 2 nuclear gene for plastid product GI:14582700 | chr1:28156033-28159872 ... ; (*SWP) sp|P52410|KASC1_ARATH (e_value=2e-18) 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1; ">
      <seq>gaagtggtacatattgtggcagtgcaagacaaggtggcgtaagggccactgcggtaccaccagtgattgaaggtacatctaagaagaaaccaccaactaaggaaaggactcaaaggcgagtggttgttacaggaatggatgtgatcacaccaaatggttaggatcccgatgtgttctatgaaaacttgcttcaaggtgtcagtggcataagtgagataaaatcttttgattgttcacaatttccaacaagaattgctggagagatcaagtctttctcaagtgatggctggatttcacctaaactttctaaacgaatggacaagttcatgctttacgctctaacagctggtaagaaggcattgataaatggcggaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="13004" stop="10198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12704" g_stop="12672" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="10916" i_length="1756">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10915" g_stop="10701" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="248" r_length="215" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10700" i_stop="10628" i_length="73">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10627" g_stop="10498" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="378" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-U564581" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12704" e_stop="12672"/>
          <exon e_start="10915" e_stop="10701"/>
          <exon e_start="10627" e_stop="10498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGGTACATATAGTGGCAGTGCAAGACAAGGTAAAAATTTCATTTTTAATCTTATTATTTTTTTATTTTTTTGGTGTTTGCTTGTACCGATCGATTATCGCATTATTTTGTTGTCATAACTGTTCTTTTAATTTGTATGTTGTGTATTGCTTTTCATTTCATATTATTTCATTGTAGTTACCTTTTCATAACTGTTTGGATAGAATTTTTGACCAAAATAGGTTATTATTAAAATCAATTTATCAAAGATAATATGTTTATTTGAAATTTTACAAAGTTAGTATAAACGTAGTTCTAAGTAAACAGACATAAAACGTTATTGTTAGTAACGTTTTATAATTCCTTACTCCGAAGCACGTTTATAGCTAAAACGTGACTCGCAGTAACGTTTCTCTGTAATTGTCTCATTCATTATTCAAATTTCCACTACTAAATTGTGTGTGTGTATATATCTATTGAAAAGTTTAATAAAGTTGTATGGAGCATTTACAAGATTGAATTTTAATTTTTAGTCATTCTAGAGAAAAGTTATTGTGAGTCACGTTTTATGTATGTTTATTTTGTCAGATTTTTGTCTTTTAGTTATTGAATTTTTTTGAATAAAATATTACCTAAAACGTTACTGAGAACTACGTTTATACTAGTTTTGTAAAATTTCAAAAAAATGTATTATCTTGGTAAATTGATTTTCATAATGACTTACTTTGGTCAAAACTTCGTTTGGATATGCTTAATTTTAAGCTGAGGGTCTATCGGAAACAACCTCTCGAGCAACGAGGCTGCGTACACACCACTCTACTCACTGGTTATGTTGTTGGGAGCTCATAGGTCATACTCCCTCAGTTTCAATTTGATTGTTTGGTTTTGACATGACACACAGTTAAAGAAAGTGAAGAAAACTTTTGAATCTTTTGTTTTTTAAATCAAAAATACCTAAAACGTACCATAATACTCTTTAATCTTGCGTTTTTAAACAGATCTTGTGTAAAGTTAGTCATAGAGTTGCCAAAATTGTAAAGATTTTTGTAAAAAAAATGGATTAAAAAGAAAAGTAAGGCAAATAAATCGACACGGACGGAGTAGTGCTTCATTATTTGTGTGTCCCATTTAATCTATGCATGGCATATTCTCAGAGTGGGATATTCTGTCATAGTCCATAAATTCAAAAATAATACAGGTGCTGCTACTGTTCTGTTTTTTTTTCTTATCATTTCCCACCTTTTTACAACTTCAAAAAGCAAATCTTGAAGTTGTTTACGGCTTTTAGCCTCTGGCAATGGTAGATTTTAGCCTTACCTACGAAAGTTGTCATGTCTTGCGATGGTATATGACTGAATGCGAAGTTTAGAAGAAAATTTAATTTGGTTGAGAGAACATCACGTCTAAGTCTGAGTTGTTTAATGAGTTTGAGTTCTTGATGTTTGCAAACTTTATAGAAATGAGATGGTGTCTAATCTTTTGGAGTGACCCGTTATGGGAAGATTGTTATATAAATTTGGAACTGATGTAGTACCTTGTTCTTTTGTTGACACCATTGCAAGTTATCATGTAGTTTGTTTGTAGTTTCGTTTCTGTGTTTAATTGGCTTTTTCTTCACCCTATCTCTAATGTGTATTCTCATACATAAGAAGGAATTGATTTTCAAATATTTTTTTCTTTTTGCGAAATAACTGTTTATAATCAAGTTTCAGTATGTGATTTCAATGTCATTGTTCTAATAGAAATTCCCTTAAATATATCTACTACTCTACATATATTTTGACGTTCTGCGCCCATCTTGTATTAGGTGGCGTAAGGGCCACTGCGGTACCACCAGTGATTGAAGGTACATCTAAGAAGAAACCACCAACTAAGGAAAGGACTCAAAGGCGAGTGGTTGTTACAGGAATGGATGTGATCACACCAAATGGTCAGGATCCCGATGTGTTCTATGAAAACTTGCTTCAAGGTGTCAGTGGCATAAGTGAGATAGAATCTTTTGATTGTTCACAATTTCCAACAGTACGTCTTCTTCTTTGGTTAGTTTTTCTCTAAATGTAATATTTTAGATGTTAAAAAAGGGGTACAATTGCAGAGAATTGCTGGAGAGATCAAGTCTTTCTCAAGTGATGGCTGGATTTCACCTAAACTTTCTAAACGAATGGACAAGTTCATGCTTTACGCTCTAACAGCTGGTAAGAAGGCATTGATAAATGGCGGAATTA</genome_strand>
        <mrna_strand>GAAGTGGTACATATTGTGGCAGTGCAAGACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCGTAAGGGCCACTGCGGTACCACCAGTGATTGAAGGTACATCTAAGAAGAAACCACCAACTAAGGAAAGGACTCAAAGGCGAGTGGTTGTTACAGGAATGGATGTGATCACACCAAATGGTTAGGATCCCGATGTGTTCTATGAAAACTTGCTTCAAGGTGTCAGTGGCATAAGTGAGATAAAATCTTTTGATTGTTCACAATTTCCAACA.........................................................................AGAATTGCTGGAGAGATCAAGTCTTTCTCAAGTGATGGCTGGATTTCACCTAAACTTTCTAAACGAATGGACAAGTTCATGCTTTACGCTCTAACAGCTGGTAAGAAGGCATTGATAAATGGCGGAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U580587" ref_strand="+" ref_description="SGN-U580587 Tomato 200607#2 [53 ESTs aligned] (*GB) gi|7331143|gb|AAF60293.1| (e_value=2e-110) chaperonin 21 precursor [Lycopersicon esculentum]; (*ATH) AT5G20720.2 (e_value=7e-93)  Symbol: None | 20 kDa chaperonin, chloroplast (CPN21) (CHCPN10) (CPN20), identical to chloroplast 20 kDa chaperonin, chloroplast precursor (Protein Cpn21), chloroplast protein Cpn10, chloroplast chaperonin 10 (Ch-CPN10), SP:O65282 from (Arabidopsis ... ; (*SWP) sp|O65282|CH10C_ARATH (e_value=6e-92) 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21; ">
      <seq>ggttatccttaacagctctacacattttatctacaatagtctaaagtctaaacacacaccttcagtccatagtagagaaaacctctccattgctattaaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcataccagtattttgcagtgtagtatagaaaagaggagattgttgtaaccattttggaataaaacttttgcaaattaatggtcaatttctagtgcagaatccagtctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22462" stop="18513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22163" g_stop="22041" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="296" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="476" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="632" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="710" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19131" g_stop="18813" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="1029" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-U580587" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1029</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22163" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTATCCTTAACAGCTCTACACATTTTATCTACAATAGTCTAAAGTCTAAACACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGAATCCAGTCTGG</genome_strand>
        <mrna_strand>GGTTATCCTTAACAGCTCTACACATTTTATCTACAATAGTCTAAAGTCTAAACACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGAATCCAGTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U580372" ref_strand="+" ref_description="SGN-U580372 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>cttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtaataatatgctccctgcagttcagctagtattattactctcattatacttgttgatagaatatacttgttatctatgttgctcagaatctttgaaaatgtcaatgagtgcctgttgaatcctctaagaatagtatacttttagaggaatgtcaacggatgcttgtcgaaccctctaagaatagtatattattcgaggacccccgacacatgtgcagcaacattttcaaaaagtactagcaaggtatatatttatacagtttgaaataaccaattccaacataaaattggcatgtgttggctttatgtaataatagctacattacataaaatgtgaaataagactacacgtatttacaatgcgctgggaagtctcgttgctctaactaaaacaagaacgaaacatattcttgcattatagtttctcatacaactatcatgtgagccaaatgacttgtgacagtgaaagaatttacaccctaatcaacatgtagttctcttttaggtgacgtgttagtcgaaaacgttagtgtataaaaatcttaattcttgttgaatatcgtcaccttttccgtggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="20074" stop="18840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19774" g_stop="19140" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-U580372" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19774" e_stop="19140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGA-TATCGTTCACCTTTTCCGTGGTT</genome_strand>
        <mrna_strand>CTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAAAAATCTTAATTCTTGTTGAATATCG-TCACCTTTTCCGTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U593451" ref_strand="+" ref_description="SGN-U593451 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ggagaaaacctctccattgctattaaggctcatcaattttgccaataaaggtgcttccttttttatcatttgattcaaattcttgaatttttgtctttaaatttactattttttgcttctggtttgctgttcttgttaccacttctgttgtggggttcaaactttgtggttcttatctagagaaaacttctcctttgttattagtgaaaccaatctcccaataataaaggtgcaatctttattatcattgttgaaattcttgaatttttgtcttccaatttaggatattttttgcttctgctgtggtatttttgttgtggggttcttgatttagttgagaattttatggttcttatctgtaactgttcctctttttgcttctgctggtgctactctttatctttaattctatagcttgtcacaatttttactatttttgcttgtggggagctgctgtttaccctttttgtaagtgggaattatggtttagttcacaattatatgtttcttaccgtcagttttactcttttttgcttgtggggttccatttctgttgtagggttctggattacattcagaattcttgagtttttatctatggttgtactctttttgcttctgggatatgagtatattgactatttctgttgtggggtttcttgattgagctcagaaaggaatggcgacaactcagctgactgcgtcatccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22389" stop="21078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22090" g_stop="21377" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-U593451" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U593451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22090" e_stop="21377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGT-AGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATC</genome_strand>
        <mrna_strand>GGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAATTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTTACCACTTCTGTTGTGGGGTTCA-AACTTTGTGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACCAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACA--ATTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAAGTGGGAATTATGGTTTAGTTCACAATTATATGTTTCTTACCGTCAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATATGAGTATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCAGAAAGGAATGGCGACAACTCAGCTGACTGCGTCATCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U590977" ref_strand="+" ref_description="SGN-U590977 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>agaaaacctctccattgctattaaggctcatcaatggtgccaataaaggtgcttccttttttatcatttgattcaaattcttgaatttttgcctttaaattcactattttttgcttctggtttgctgctcttgttaccacttctgttgtggggttcaaactttgtggttcttatctagagaaaacttctcctttgttattagtgaaaccaatctcccaataataaaggtgcaatctttattatcattggtgaaatacttgaattttcgccttccaatttaggatattttttgctcctgctgtggtatttttgtggaggggttcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22388" stop="21460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22088" g_stop="21760" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-U590977" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22088" e_stop="21760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGAT</genome_strand>
        <mrna_strand>AGAAAACCTCTCCATTGCTATTAAGGCTCATCAATGGTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAATTTTTGCCTTTAAATTCACTATTTTTTGCTTCTGGTTTGCTGCTCTTGTTACCACTTCTGTTGTGGGGTTCA-AACTTTGTGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACCAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGGTGAAATACTTGAATTTTCGCCTTCCAATTTAGGATATTTTTTGCTCCTGCTGTGGTATTTTTGTGGAGGGGTTCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U562994" ref_strand="+" ref_description="SGN-U562994 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|156571764|gb|ABU84809.1| (e_value=1e-49) putative; (*ATH) AT1G19210.1 (e_value=4e-44)  Symbol: None | encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. | chr1:6626813-6627521 REVERSE | Alia... ; (*SWP) sp|Q84QC2|ERF17_ARATH (e_value=4e-43) Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017; ">
      <seq>gcaagattcatcaatttaacttcaatttcacaaaagaaaatttaaaatttgattaaaaatggtgaaacccaattcgaaagatactgaattttcacagtcgtcatcgtcgtcgttgtatcggggagtacggaagaggaaatgggggaaatgggtatcggaaattagattacctaatagtagagaaaggatttggttgggttcttatgatacgccggaaaaagctgctaaagcatttgacgccgcacttttttgtttgcggggtaaaggggctaatttcaatttcccggaaaatccgccggagattaggaacggaaggacgatgactccgtcggagattcaatcggcggcggcgcagtttgcgaataatacagaacccgaacttatccgggtcgggccaagggagaattcggatctttcttcttcctcatcggaaatatttcgagcggaatcaccgtcggtgtcagtttccgatagagtagaaagtgaaaagacggaaataaccttgggtaacgattttatcgatgtgtatcgggtggagtctagagtggaaagtgaaaagacggaaatgtccttggataacggatttgttgacatgttttcgtcgttaggaacggttaatgatatgtctgattttggaatttttccggggttcgatgacttatcgggtgaattttttataccaccaccatcgtcaccacaaccatcaccactgcaaatgcctaantnggaatcnttagaanannnannatttgaactatgatggatttcnntcncngggant</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="30153" stop="31535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30452" g_stop="31235" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="781" r_length="781" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-U562994" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U562994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30452" e_stop="31235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGATTCATCAATTTAACTTCAATTTCACAAAAGAAAATTTAAAATTTGATTAAAAATGGTGAAACCCAATTCGAAAGATACTGAATTTTCACAGTCGTCATCGTCGTCGTTGTATCGGGGAGTACGGAAGAGGAAATGGGGGAAATGGGTATCGGAAATTAGATTACCTAATAGTAGAGAAAGGATTTGGTTGGGTTCTTATGATACGCCGGAAAAAGCTGCTAAAGCATTTGACGCCGCACTTTTTTGTTTGCGGGGTAAAGGGGCTAATTTCAATTTCCCGGAAAATCCGCCGGAGATTAGGAACGGAAGGACGATGACTCCGTCGGAGATTCAATCGGCGGCGGCGCAGTTTGCGAATAATACAGAACCCGAACTTATCCGGGTCGGGCCAAGGGAGAATTCGGATCTTTCTTCTTCCTCATCGGAAATATTTCGAGCGGAATCACCGTCGGTGTCAGTTTCCGATAGAGTAGAAAGTGAAAAGACGGAAATAACCTTGGGTAACGATTTTATCGATGTGTATCGGGTGGAGTCTAGAGTGGAAAGTGAAAAGACGGAAATGTCCTTGGATAACGGATTTGTTGACATGTTTTCGTCGTTAGGAACGGTTAATGATATGTCTGATTTTGGAATTTTTCCGGGGTTCGATGACTTATCGGGTGAATTTTTTATACCACCACCATCGTCACCACAACCATCACCACTGCAAATGCCTAATTTGGAATCATTAGAAGAAGAGAATTATTTGAACTATGATGGATTTCAATCACAGGGGACT</genome_strand>
        <mrna_strand>GCAAGATTCATCAATTTAACTTCAATTTCACAAAAGAAAATTTAAAATTTGATTAAAAATGGTGAAACCCAATTCGAAAGATACTGAATTTTCACAGTCGTCATCGTCGTCGTTGTATCGGGGAGTACGGAAGAGGAAATGGGGGAAATGGGTATCGGAAATTAGATTACCTAATAGTAGAGAAAGGATTTGGTTGGGTTCTTATGATACGCCGGAAAAAGCTGCTAAAGCATTTGACGCCGCACTTTTTTGTTTGCGGGGTAAAGGGGCTAATTTCAATTTCCCGGAAAATCCGCCGGAGATTAGGAACGGAAGGACGATGACTCCGTCGGAGATTCAATCGGCGGCGGCGCAGTTTGCGAATAATACAGAACCCGAACTTATCCGGGTCGGGCCAAGGGAGAATTCGGATCTTTCTTCTTCCTCATCGGAAATATTTCGAGCGGAATCACCGTCGGTGTCAGTTTCCGATAGAGTAGAAAGTGAAAAGACGGAAATAACCTTGGGTAACGATTTTATCGATGTGTATCGGGTGGAGTCTAGAGTGGAAAGTGAAAAGACGGAAATGTCCTTGGATAACGGATTTGTTGACATGTTTTCGTCGTTAGGAACGGTTAATGATATGTCTGATTTTGGAATTTTTCCGGGGTTCGATGACTTATCGGGTGAATTTTTTATACCACCACCATCGTCACCACAACCATCACCACTGCAAATGCCTAANTNGGAATCNTTAGAA-NA-NNNANNATTTGAACTATGATGGATTTCNNTCNC-NGGGANT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U578541" ref_strand="+" ref_description="SGN-U578541 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>ctaatttgaaatcattacaaaaagagaattatttgaactatgatggatttcaatcacaggggacttcatttctttggaatttttgaaggatataaaaatgttacattatattcattaatggttaataatataagtttataaaattagaaatagtactaaaaattagtattaagtaggattaagagaacttatttgaattttaaaacttcatttgatgattttgtagacaattctagacattttttttggttgctagaattgttacaacatatgtgatttgtacacataataaagagaatgtattttttgactaatcgctggaactcaaaatgaggatgaccctactaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="30871" stop="31789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31171" g_stop="31487" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-U578541" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31171" e_stop="31487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTTGGAATCATTAGAAGAAGAGAATTATTTGAACTATGATGGATTTCAATCACAGGGGACTTCATTTCTTTGGAATTTTTGAAGGATATAAAAATGTTACATTATATTCATTAATGGTTAATAATATAAGTTTATAAAATTAGAAATAGTACTAAAAATTAGTATTAAGTAGGATTAAGAGAACTTATTTGAATTTTAAAACTTCATTTGATGATTTTGTAGACAATTCTAGACATTTTTTTTGGTTGCTAGAATTGTTACAACATATGTGATTTGTACACATAATAAAGAGAATGTATTTTTTGACTAATCG</genome_strand>
        <mrna_strand>CTAATTTGAAATCATTACAAAAAGAGAATTATTTGAACTATGATGGATTTCAATCACAGGGGACTTCATTTCTTTGGAATTTTTGAAGGATATAAAAATGTTACATTATATTCATTAATGGTTAATAATATAAGTTTATAAAATTAGAAATAGTACTAAAAATTAGTATTAAGTAGGATTAAGAGAACTTATTTGAATTTTAAAACTTCATTTGATGATTTTGTAGACAATTCTAGACATTTTTTTTGGTTGCTAGAATTGTTACAACATATGTGATTTGTACACATAATAAAGAGAATGTATTTTTTGACTAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U571879" ref_strand="+" ref_description="SGN-U571879 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|6996560|emb|CAB75429.1| (e_value=9e-177) oligouridylate binding protein [Nicotiana plumbaginifolia]; (*ATH) AT1G17370.1 (e_value=3e-151)  Symbol: None | oligouridylate-binding protein, putative, similar to oligouridylate binding protein (Nicotiana plumbaginifolia) GI:6996560; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) | chr1:5951535-59550... ; (*SWP) sp|Q01085|TIAR_HUMAN (e_value=2e-54) Nucleolysin TIAR OS=Homo sapiens GN=TIAL1; ">
      <seq>caatttaaagtttgcatttatttttttttttggttgaagatgatgcaacagcaaaggctgaaacaacagcaaggattgatgcaacaatccctttatcatcctggtctcatagcatcccctcaaataaagcccatcttgagtggaaatctgcctcctggatttgattcaactacttgcaggagtgtgtatgttggaaacatcagttctcaagtcacggaacaacttcttcaagaggttttctcaagtaccggtccccttgagggttgtaagcttataaggaaggacaagtcgtcctatgggtttgtggattattttgatcgccaatcagctgcgcttgctattgtgagcctcaatggaaggcaattgtttggacagtgtataaaagttaactgggcttatgccagtgctaaaagagaggacacatcaaatcattttagcatatttgttggtgatcttagtccggaggttacagattccacactgtttgcgtgcttttcagtataccctagctgctcagatgcaagagtgatgtgggatcagaaaataggccggtctagagggtttgggtttgtttcctttcgtgatcagcaggaagcccaaagtgcaatagatgacttgaatggaaagtggcttggaagccgacaaatccgctgcaactgggcagcaaaaggtgctggagccagtaatgacaaccggagttcagatgctaaaagtgctgttgagttgacaactggaacatcagatgatggtcaactgaaggccaacgaagacgctccagaaaataatccgcagtacacaactgtatatgttggcaaccttgctcctgatgtcactaccattgacctccatcgttattttcatgctcttggggctggtgttattgctgatgtccgtattcagcgagacagaggatttggctttgtacgatacagcaatcatgctgaagcagctcgagcaatccaattaggaaatgctcgaatcctctttggtaaacctattaagtgctcatggggaagcaagccaactccaccaggaagcagcacgaaccctctaccacctcctgttatcagacaactccctggtatttcagccatgggtcttgcgatgtacgagaggcaggttgctttggctaggatgactggtatgcagactctcatgcaacaccagggacagcgaattggcgttgctagtcaggttctgtatgatggtggcattgcttccccgcagccaccggtatactactagttgttgattcaataaaaacttgtaaacacctgttgttgttagttctctgtgctattttaagtgatagaatcctcctctctttttttttatctattgttagttttctttagcttcctttaataccatcagacagaatgtattggatatgtagtctgtattctgtttgagaatgaaagttataatatctctttggaaatacaatcacttcattggattatcagtttctttttttcaaaaaaattattcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="34551" stop="41300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34851" g_stop="34972" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34973" i_stop="36523" i_length="1551">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36524" g_stop="36585" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="185" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36586" i_stop="37349" i_length="764">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37350" g_stop="37452" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="288" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37453" i_stop="38132" i_length="680">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38133" g_stop="38209" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="365" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38210" i_stop="38283" i_length="74">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38284" g_stop="38345" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="427" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38346" i_stop="38432" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38433" g_stop="38520" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="515" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38521" i_stop="38624" i_length="104">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38625" g_stop="38700" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="591" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="38701" i_stop="38808" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="38809" g_stop="38839" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="622" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="38840" i_stop="39563" i_length="724">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="39564" g_stop="39683" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="742" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="39684" i_stop="40049" i_length="366">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="40050" g_stop="40135" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="828" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="40136" i_stop="40243" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="40244" g_stop="40417" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="829" r_stop="1002" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="40418" i_stop="40506" i_length="89">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="40507" g_stop="41000" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1003" r_stop="1496" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-U571879" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1495</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34851" e_stop="34972"/>
          <exon e_start="36524" e_stop="36585"/>
          <exon e_start="37350" e_stop="37452"/>
          <exon e_start="38133" e_stop="38209"/>
          <exon e_start="38284" e_stop="38345"/>
          <exon e_start="38433" e_stop="38520"/>
          <exon e_start="38625" e_stop="38700"/>
          <exon e_start="38809" e_stop="38839"/>
          <exon e_start="39564" e_stop="39683"/>
          <exon e_start="40050" e_stop="40135"/>
          <exon e_start="40244" e_stop="40417"/>
          <exon e_start="40507" e_stop="41000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTAAAGTTTGCATTT-TTTTTTTTTTTGGTTGAAGATGATGCAACAGCAAAGGCTGAAACAACAGCAAGGATTGATGCAACAATCCCTTTATCATCCTGGTCTCATAGCATCCCCTCAGGTAAATTTTCCATTTTTGCCTTTTCAAAGTTTTCATTTTTTTTTTCCTTTTTTGCAATTTCATGTTTTGGTTTTAGTTGCTATTAGCTACTTAGCATTGTTGTTTTTGTTTGTGCTATGGTTATCCCATTATTTTTGTTGTTGTTGTTGTTACTGTTTTTGGTTATGTATGTGTTTTGTTTTTCATTTTGCATTGTTTTGGTGTTGTTATGCTTTCATTTCTGTATTCCCTTTTCTCAAATTTGCTTATTATAAGCTGAGCATTTATTGAAGCAACTTCTCTATGTGTTTTGAGTATCGGTCTAGGCGGTTAGGAAGGCTTGCTAGGCCAGTAACCGGACCAAAGAATGAATGTGTAATGATAGTGTTTTCACACCATGCTTAATAAATAATTGAATGTAGAAAGGGGATTGTACACTGAAGAAAAGTAGTCCATGGCCCTCTTTTAGAGTGTATAATGGGAGGTTGAATGTCAAACTGGTTCTCTCGAGTATACCCATTATCAAAAAATATACGTCACTTTGGGACACATGTGCATAGCCGCTGCGTGTGGCTAAAAGTCAACCAAAATCTGCATACTCACTATCTTTTGTGGGATTACATCCAGTTGGTTGTTACTGTTGTTTGTTTGTTTACGTAGGAGTTTGTGATTCTGGGTCATTTTTCATTGTTTCTTAGTTTGTTTGGCAGTTTCTCTTTGTTTATTCTTTCAAAGATTCATTTTTATCTATTATTCAAGGAGGTATTTGTCATCTGTAGGTATTGACCTCTATATATGTATCGGATTTTATATGTCCTCTTTTCGAAATGAATTTGTATGAAGTACTACTAAGCACTAGTTTTTCATACATGGCCAGCTGCTTTCACTTGTTCTAAAATCTGTTATGGCCATATGTGAAAGAGTAGTACTTTGTAGCATTTCATACAAATTCATTTTGTGTTAAAGGATTTTAATAGCATGCGGGGACATTACTGTGTCGTATGCCTTTAGTTTCTATTAACATTTTATCCATTGTTGATGTTTGGCTTTCGAAAAATTTAGGTGGTTATATCTCTGTTTGACATCTGGAGTTTCTATTCTCGTTGATACAAGTGGGGATAATCTGGTCTGGCTTCTAGTCATTAAAGGAGTAAAGTTGGAAGGCCACTGTTAGACTCCTCGGGTTGGGGGATGGGATACTGTTGTCATTTGAAAAGATTATCTTTTAGTTTTTGAAGTGTAGGATCCATACATGTTTAGATTTTCCTTTTCTTCTTTGTAGATGTAATTTCATGATTTCCTAAAATTATTTATTAAAAAACAAATTTTGTGAAATCCTTGGGATGGGGTATAGCAATTAACGGTCATTCTTATGTCCTTTCCTTCTTCCTTTCTCCCCCTCCAAATCTTTATGTAACTCGTATATGTGAAGAGTATTTTGTATGTTCACAATGCACACTGTCATTCTTTTATCGTACCCTAAATCACTGGTCATAAATTTTTACTCGACTGAATATTAGCATTTACTTCCTTTTTCACTGTCACTGACATTCTACTACTATTTTTTCATAGATAGAGCCCATCTTGAGTGGAAATCTGCCTCCTGGATTTGATTCAACTACTTGCAGGAGTGTGTGAGTGCCTTACACATTTTGTATTAATAATTATTTCTTGTCCAACTTTTTTGCAGTTATAACTTATAAGATACCTTTCTCGGCCTCATGGCCAAGATAAAGTGTAGTATATGTTCTTATCAGTCTTGAGGTTATAAGAGTGATAGTTTGAACTTTGAACAATCACGCGTCATGACTTACTTGCATTGGGAAATGATTAACTCGCTAATTACCCCTATGCTAGCTTATTTTATTCTTCTTAATTGTCTCGAATTACCTACGGAGTTTGAGGGGTTCAGTTTTATCCATGTAGTGAATAGCTCGGAATAAAATAAAGAAGGCCCGCTTCGTTTCAGAAGTCTTAAATGATTTGAGGCACAAAATCTGTCGTAGATGTGAACATGCCACCGAAGGGAAGACAGTGACCATGACTTGCCACTTGACATTCCCCAAAAAGAAGCCGAACACTAGCCTTTTCCCAATTAACCTATCAACTATTGGCGAAGCCTGAAGATGAAATTACAGCCTGATCATTTAATCATCGTTCCAAATTGCTGCTGCTTGGAAATAGAAAATGCCATTCTGGCAATCTACCCTTATGTGTGACAATATACTCATTTGTATCTCAATATTGATGCAAGCACCCACATACAAGTTGATAATTGTTCTTTTATCTATTCCTTCTATGAATTTTATTTCTAAAGCAAGCTGTTCTTATACTTGCATGAGGAATGGTTATTGTTGATATATGATAACCTGTTTGCTTTTGACATTATCAAATACAGGTATGTTGGAAACATCAGTTCTCAAGTCACGGAACAACTTCTTCAAGAGGTTTTCTCAAGTACCGGTCCCCTTGAGGGTTGTAAGCTTATAAGGAAGGACAAGGTATGATCTTGTTTTACTTGCTATAAAAATCTCACTCAACTACAATAGTACATTTGATCAATGTGATAGTTCTTTACCTCATCAAACATGTTATGTTTTTGTTATTTGGTATGTGTTATTTTATGGTACTTGTGCATTGGAGAAAGTCTAAATTGTGATGGGAGTTCAAAATTTACACATCACTTTTGAGCTCTTGTAGATGAAAGTATGACAGTCTGAATCCATTGTTGTTTTTCTTTTAACAAGTTATTCATCGCAATATTATTGGTCTTTTCCTTGATTTTCTGTTTCTGAGTTAACTTGTCTAGCCAGAACAAGGTAGATTGGGAAGGATGGGCAATAAACAAACCAAAACTGACCTAACTTGGCCTTGTAGCAGTCCTGTATTTCTTAGTATTGACTGTTGAATCTAGTTCAGAAGATATTTTTAAAGCGGAAAACATCATTGTTGGACTTGGATGTCTCGCAATTATTTTTAAAAAATTCAATCGTTAATTGTAATATATTATTAATTACATGCATTTTTTTGCAATTCAGGTTGCCCGTAGAATACTGATTCATAAATGTATAAACCAGTAGTTCATCTCATGTCTGAAAATGGTTTTAGATTATCCCTTTGGTTGTTGTGTGATTAGTAATTACTAGAGTGATAGATCGATGATGATTCTCTTAAAATGCAGTCGTCCTATGGGTTTGTGGATTATTTTGATCGCCAATCAGCTGCGCTTGCTATTGTGAGCCTCAATGGAAGGCAATTGTAAGAGCTTAAACAAAATATTTACTTCATAGTTCAATATTTGCTGCATGGTTTGGCTAACTTGTAAACTGCAGGTTTGGACAGTGTATAAAAGTTAACTGGGCTTATGCCAGTGCTAAAAGAGAGGACACATCAAGTACGTGTCTTACACACCTCCATTTTCGACCCTCTTAATTTTTTTATTATTTTGTCAAATACTAAAACTGTTACTTCTCACTTGCAGATCATTTTAGCATATTTGTTGGTGATCTTAGTCCGGAGGTTACAGATTCCACACTGTTTGCGTGCTTTTCAGTATACCCTAGCTGCTCGTACGTCCACTCTCTGTTTATTTTGTACTATACACGGTCTGCTGGCATTCATATTCTGAAAATGGATGATAATACACAATGCTACATTAATGTTTTTCTTGTAGAGATGCAAGAGTGATGTGGGATCAGAAAATAGGCCGGTCTAGAGGGTTTGGGTTTGTTTCCTTTCGTGATCAGCAGGTATTAAGCTAGCTAAATACTATCTTACGATCTTTGCTATTATTGCTCCTCTTTACAACCCCCCTAAACAAAAAAAATGAAAGTACTCGTTATGTTTGTTTTGTGCAGGAAGCCCAAAGTGCAATAGATGACTTGAATGGTAAGATCAAATGTTTGGTCTATACTCTATATCTTGCTTCGCCATTATATTTGTATGCCGATCTCTACAATTTCATCAGATTAAGACCACGATGTCAGTAGTCATTTCTTTTAACCATCCATATTCTATTGGAAAAATGCAGTTGGGTTTATTTATATTACTTACGTGATACGTCGGTTAGATGGTTGACATATATGTGAATTGGGAAAAATGTAGTTGTGCCAGTTCCCCAAAAAAATGCGGTGGTGCCTATTTATATTTCATATGTTGGTTTGATGGTAGATATATATGTGAAACCACGGTGAGTGAAGGTGTTATAAGGGACGAGGCAGTCTTAATGACTGAAGTCAAGAAGGGACGAAAGTTTTTCAGGGATCCATGTAGACTTAGCGAGAGATACAGTGAATTTTATTGAAGACGCCCCTGGTTTTATTTATTACATATTGAAACTTACGGTGCGGACAAAGTTATCCCGGTATTATAGTTCTGGGTTCACCTCCCAATTGGGATAATAAAATAACACCAAGTTTGAGGTATTAATTTTGTCCCCGGATTAGTTACACCTTCAACCAAAGTATAAATTTTATTACAAACTTAGTCTTGGGATATCCCACCTTATCCCATGAACCAAATGACCCCTAATAGTGTATTCTATCGAGGACTCCTATGGTTTTCTTTCTTTTATTGTTACCTAATTGAATTTTTTTGTTTATTAAAACAAAAGGAAAGTGGCTTGGAAGCCGACAAATCCGCTGCAACTGGGCAGCAAAAGGTGCTGGAGCCAGTAATGACAACCGGAGTTCAGATGCTAAAAGTGCTGTTGAGTTGACAACTGGAACATCAGGTGGGTTATGTTACATGCTTATTTTGGCTACTACTGCTTTTGTCTTCTCCGCATACTATTTCAACTTCTGATGGTTGAGAGTCTCTACTCATTTATATTTTAAAACATCTGTGTGTTTCCAGTGTTTTCCGTTTCAATTAGCTTCAGATTTCATGTAGGATCTTTGAGTGTAGACCAGAGCACGTGCCATATGATATGAATTCCATGCTAATATACATAAAAATCTTCTATCAAGCTAATGTGAGGTTATGAACTATAAATATGAAATGAAGTGTTTAGATATGCTTGATAGTCGGCCTATCCTTGTTTATTATGAGAACTTGTATTACGAATATCTTCATATCATCTATTTTTTCATATATGTAGATGATGGTCAACTGAAGGCCAACGAAGACGCTCCAGAAAATAATCCGCAGTACACAACTGTATATGTTGGCAACCTTGCTCCTGATGTAAGTACCGGTTGGGACAGGGGGAGTATCACTTCAGCTTTAGTCGGGAGGAATTTATTTGCGATTATTTAGAATATCTTCTTGTTCTGACATCCAGTTATGTTCCAGGTCACTACCATTGACCTCCATCGTTATTTTCATGCTCTTGGGGCTGGTGTTATTGCTGATGTCCGTATTCAGCGAGACAGAGGATTTGGCTTTGTACGATACAGCAATCATGCTGAAGCAGCTCGAGCAATTCAATTAGGAAATGCTCGAATCCTCTTTGGTAAACCTATTAAGGTACTATGTTATACCATGACATGAATTTTTCGGACGTTCATCAATATAATACGTCTAGCTACCTATTGAGGTACTGTGTCCATCTGCAGTGCTCATGGGGAAGCAAGCCAACTCCACCAGGAAGCAGCACGAACCCTCTACCACCTCCTGTTATCAGACAACTCCCTGGTATTTCAGCCATGGGTCTTGCGATGTACGAGAGGCAGGTTGCTTTGGCTAGGATGACTGGTATGCAGACTCTCATGCAACACCAGGGACAGCGAATTGGCGTTGCTAGTCAGGTTCTGTATGATGGTGGCATTGCTTCCCCGCAGCCACCGGTATACTACTAGTTGTTGATTCAATAAAAACTTGTAAACACCTGTTGTTGTTAGTTCTCTGTGCTATTTTAAGTGATAGAATCCTCCTCTCTTTTTTTTTATCTATTGTTAGTTTTCTTTAGCTTCCTTTAATACCATCAGACAGAATGTATTGGATATGTAGTCTGTATTCTGTTTGAGAATGAAAGTTATAATATCTCTTTGGAAATACAATCACTTCATTGGATTATCAGTTTCTTTTTTTCAAAAAAATTATTCTTTTT</genome_strand>
        <mrna_strand>CAATTTAAAGTTTGCATTTATTTTTTTTTTTGGTTGAAGATGATGCAACAGCAAAGGCTGAAACAACAGCAAGGATTGATGCAACAATCCCTTTATCATCCTGGTCTCATAGCATCCCCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGCCCATCTTGAGTGGAAATCTGCCTCCTGGATTTGATTCAACTACTTGCAGGAGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTGGAAACATCAGTTCTCAAGTCACGGAACAACTTCTTCAAGAGGTTTTCTCAAGTACCGGTCCCCTTGAGGGTTGTAAGCTTATAAGGAAGGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTCCTATGGGTTTGTGGATTATTTTGATCGCCAATCAGCTGCGCTTGCTATTGTGAGCCTCAATGGAAGGCAATT..........................................................................GTTTGGACAGTGTATAAAAGTTAACTGGGCTTATGCCAGTGCTAAAAGAGAGGACACATCAA.......................................................................................ATCATTTTAGCATATTTGTTGGTGATCTTAGTCCGGAGGTTACAGATTCCACACTGTTTGCGTGCTTTTCAGTATACCCTAGCTGCTC........................................................................................................AGATGCAAGAGTGATGTGGGATCAGAAAATAGGCCGGTCTAGAGGGTTTGGGTTTGTTTCCTTTCGTGATCAGCAG............................................................................................................GAAGCCCAAAGTGCAATAGATGACTTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGCTTGGAAGCCGACAAATCCGCTGCAACTGGGCAGCAAAAGGTGCTGGAGCCAGTAATGACAACCGGAGTTCAGATGCTAAAAGTGCTGTTGAGTTGACAACTGGAACATCAG..............................................................................................................................................................................................................................................................................................................................................................................ATGATGGTCAACTGAAGGCCAACGAAGACGCTCCAGAAAATAATCCGCAGTACACAACTGTATATGTTGGCAACCTTGCTCCTGAT............................................................................................................GTCACTACCATTGACCTCCATCGTTATTTTCATGCTCTTGGGGCTGGTGTTATTGCTGATGTCCGTATTCAGCGAGACAGAGGATTTGGCTTTGTACGATACAGCAATCATGCTGAAGCAGCTCGAGCAATCCAATTAGGAAATGCTCGAATCCTCTTTGGTAAACCTATTAAG.........................................................................................TGCTCATGGGGAAGCAAGCCAACTCCACCAGGAAGCAGCACGAACCCTCTACCACCTCCTGTTATCAGACAACTCCCTGGTATTTCAGCCATGGGTCTTGCGATGTACGAGAGGCAGGTTGCTTTGGCTAGGATGACTGGTATGCAGACTCTCATGCAACACCAGGGACAGCGAATTGGCGTTGCTAGTCAGGTTCTGTATGATGGTGGCATTGCTTCCCCGCAGCCACCGGTATACTACTAGTTGTTGATTCAATAAAAACTTGTAAACACCTGTTGTTGTTAGTTCTCTGTGCTATTTTAAGTGATAGAATCCTCCTCTCTTTTTTTTTATCTATTGTTAGTTTTCTTTAGCTTCCTTTAATACCATCAGACAGAATGTATTGGATATGTAGTCTGTATTCTGTTTGAGAATGAAAGTTATAATATCTCTTTGGAAATACAATCACTTCATTGGATTATCAGTTTCTTTTTTTCAAAAAAATTATTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U591506" ref_strand="+" ref_description="SGN-U591506 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|156619491|gb|ABU88421.1| (e_value=1e-24) jasmonate; ">
      <seq>aaccttaatgaatttaaataatattacatatatatatataaatataataaagtacttaataacaaacatagtcttgattacaaaaaaaaaaatgttaaaaatagtatttcatagttagatcaaagtggcttcaatcaatctcgaaaccaactaaaaaaaaccaaaaacttggttatctaatagtagtatatcaaagcaataggcctataatcatcagggcagtctggtgtactaagctctctgtgacagtccttttgctttccacagctcgaacctgttacctcctggtccacataacactaacttttaccagttacgtcacaccaagacttcccttcttcaataatcaaaaatgaaaacaaaacaaaaaaaaaacaagaatagtaactagaaatattgctcagttttaacaaattgagcacctaatcccaaccatgctttgttatcctcattcttggatttcttgttgttggagatttggtatggtgcaattgatgttactctatctttccttttctccaagaatcttgtaagtgaattccgtctcgcgattggtaaatcagcaacagaaggctgtggcattgacagtttaggaagttcttgaatcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="45817" stop="47025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46117" g_stop="46725" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-U591506" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46117" e_stop="46725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTTAATGAATTTAAATAATATTACATATATATATATAAATATAATAAAGTACTTAATAACAAACATAGTCTTGATTAC-AAAAAAAAAATGTTAAAAATAGTATTTCATAGTTAGATCAAAGTGGCTTCAATCAATCTCGAAACCAACTAAAAAAAACCAAAAACTTGGTTATCTAATAGTAGTATATCAAAGCAATAGGCCTATAATCATCAGGGCAGTCTGGTGTACTAAGCTCTCTGTGACAGTCCTTTTGCTTTCCACAGCTCGAACCTGTTACCTCCTGGTCCACATAACACTAACTTTTACCAGTTACGTCACACCAAGACTTCCCTTCTTCAATAATCAAAAATGAAAACAAAAC-AAAAAAAAACAAGAATAGTAACTAGAAATATTGCTCAGTTTTAACAAATTGAGCACCTAATCCCAACCATGCTTTGTTATCCTCATTCTTGGATTTCTTGTTGTTGGAGATTTGGTATGGTGCAATTGATGTTACTCTATCTTTCCTTTTCTCCAAGAATCTTGTAAGTGAATTCCGTCTCGCGATTGGTAAATCAGCAACAGAAGGCTGTGGCATTGACAGTTTAGGAAGTTCTTGAATCAATT</genome_strand>
        <mrna_strand>AACCTTAATGAATTTAAATAATATTACATATATATATATAAATATAATAAAGTACTTAATAACAAACATAGTCTTGATTACAAAAAAAAAAATGTTAAAAATAGTATTTCATAGTTAGATCAAAGTGGCTTCAATCAATCTCGAAACCAACTAAAAAAAACCAAAAACTTGGTTATCTAATAGTAGTATATCAAAGCAATAGGCCTATAATCATCAGGGCAGTCTGGTGTACTAAGCTCTCTGTGACAGTCCTTTTGCTTTCCACAGCTCGAACCTGTTACCTCCTGGTCCACATAACACTAACTTTTACCAGTTACGTCACACCAAGACTTCCCTTCTTCAATAATCAAAAATGAAAACAAAACAAAAAAAAAACAAGAATAGTAACTAGAAATATTGCTCAGTTTTAACAAATTGAGCACCTAATCCCAACCATGCTTTGTTATCCTCATTCTTGGATTTCTTGTTGTTGGAGATTTGGTATGGTGCAATTGATGTTACTCTATCTTTCCTTTTCTCCAAGAATCTTGTAAGTGAATTCCGTCTCGCGATTGGTAAATCAGCAACAGAAGGCTGTGGCATTGACAGTTTAGGAAGTTCTTGAATCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U579837" ref_strand="+" ref_description="SGN-U579837 Tomato 200607#2 [55 ESTs aligned] (*GB) gi|156619491|gb|ABU88421.1| (e_value=7e-120) jasmonate; (*ATH) AT1G19180.1 (e_value=3e-30) | Symbol: None | expressed protein | chr1:6622085-6623611 FORWARD | Aliases: T29M8.5, T29M8_5; (*SWP) sp|Q9LMA8|TI10A_ARATH (e_value=2e-29) Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A; ">
      <seq>cgggccggggattattcatccaaacagttcacaaaaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagattcttggagaaaaggaaagatagagtaacatcaattgcaccataccaaatctccaacaacaagaaatccaagaatgaggataacaaagcatggttgggattaggtgctcaatttgttaaaactgagcaatatttctagttactattcttgttttttttttgttttgttttcatttttgattattgaagaaaggaagtcttggtgtgacgtaactggtaaaagttagtgttatgtggaccaggaggtaacaggttcgagctgtggaaagcaaaaggactgtcacagagagcttagtacaccagactgccctgatgattataggcctattgctttgatatactactattagataaccaagtttttggttttttttagttggtttcgagattgattgaagccactttgatctaactatgaaatactatttttaacatttttttttttgtaatcaagactatgtttgttattaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48950" stop="45869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48650" g_stop="48408" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="253" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46169" g_length="935"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="1190" r_length="937" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-U579837" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1178</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48650" e_stop="48408"/>
          <exon e_start="47103" e_stop="46169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTCATCCAAACAGTTCACAAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTG-TTTTTTTTTGTTTTGTTTTCATTTTTGATTATTGAAGAAGGGAAGTCTTGGTGTGACGTAACTGGTAAAAGTTAGTGTTATGTGGACCAGGAGGTAACAGGTTCGAGCTGTGGAAAGCAAAAGGACTGTCACAGAGAGCTTAGTACACCAGACTGCCCTGATGATTATAGGCCTATTGCTTTGATATACTACTATTAGATAACCAAGTTTTTGGTTTTTTTTAGTTGGTTTCGAGATTGATTGAAGCCACTTTGATCTAACTATGAAATACTATTTTTAACA-TTTTTTTTTTGTAATCAAGACTATGTTTGTTATTAAGTA</genome_strand>
        <mrna_strand>ATTATTCATCCAAACAGTTCACAAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTGTTTTTTTTTTGTTTTGTTTTCATTTTTGATTATTGAAGAAAGGAAGTCTTGGTGTGACGTAACTGGTAAAAGTTAGTGTTATGTGGACCAGGAGGTAACAGGTTCGAGCTGTGGAAAGCAAAAGGACTGTCACAGAGAGCTTAGTACACCAGACTGCCCTGATGATTATAGGCCTATTGCTTTGATATACTACTATTAGATAACCAAGTTTTTGGTTTTTTTTAGTTGGTTTCGAGATTGATTGAAGCCACTTTGATCTAACTATGAAATACTATTTTTAACATTTTTTTTTTTGTAATCAAGACTATGTTTGTTATTAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U590133" ref_strand="+" ref_description="SGN-U590133 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ttttaccagttacgtcacaccaagaattcccttcttcttttttcaaaaatgaaaacaaaacaataaaaaaccaagattagtaactagaatttttgctcagttttaacaaattgagcacctattcccaaccatgctttgttatcctcattcttggatttcttgttgttggagattgggtatggggcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="46120" stop="46906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46420" g_stop="46606" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-U590133" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>187</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46420" e_stop="46606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACCAGTTACGTCACACCAAGACTTCCCTTCTTCAATAATCAAAAATGAAAACAAAACAA-AAAAAAACAAGAATAGTAACTAGAAATATTGCTCAGTTTTAACAAATTGAGCACCTAATCCCAACCATGCTTTGTTATCCTCATTCTTGGATTTCTTGTTGTTGGAGATTTGGTATGGTGCAAT</genome_strand>
        <mrna_strand>TTTTACCAGTTACGTCACACCAAGAATTCCCTTCTTCTTTTTTCAAAAATGAAAACAAAACAATAAAAAACCAAGATTAGTAACTAGAATTTTTGCTCAGTTTTAACAAATTGAGCACCTATTCCCAACCATGCTTTGTTATCCTCATTCTTGGATTTCTTGTTGTTGGAGATTGGGTATGGGGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U590351" ref_strand="+" ref_description="SGN-U590351 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|156619491|gb|ABU88421.1| (e_value=2e-21) jasmonate; ">
      <seq>tccaggttcacaaaaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcacacttgtaaccttttgagtcaattcttgaagaaaaaaggctctgttggagatcttaataatcttggtctctacaaaactacttctgaatcaactggatctcaacaaacagctactaccaccacgactactctgagtatgttaccactgattgataaatcaagtgactcatcgtcgacatcatcgtccgatgtaacacatcctcaaacacccatgaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48936" stop="46679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48638" g_stop="48408" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46979" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="357" r_length="125" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-U590351" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48638" e_stop="48408"/>
          <exon e_start="47103" e_stop="46979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACA-GTTCACAAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTT</genome_strand>
        <mrna_strand>TCCAGGTTCACAAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCACACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGCTCTGTTGGAGATCTTAATAATCTTGGTCTCTACAAAACTACTTCTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACGACTACTCTGAGTATGTTACCACTGATTGATAAATCAAGTGACTCATCGTCGACATCATCGTCCGATGTAACACATCCTCAAACACCCATGAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U585088" ref_strand="+" ref_description="SGN-U585088 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157342499|emb|CAO65211.1| (e_value=6e-153) unnamed; (*ATH) AT3G42950.1 (e_value=3e-149)  Symbol: None | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein, weak similarity to polygalacturonase precursor (Cucumis melo) GI:3320460; contains PF00295: Glycosyl hydrolases family 28 | chr3:15026128-15029059 F... ; (*SWP) sp|Q9LW07|PGLRL_ARATH (e_value=3e-23) Putative polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720; ">
      <seq>aagatgcaggtaatcacagggcataatggtacaattaatgggcagggtcaagcatggtggaagaaattccggcagaagcttcttaaccattcccgaggaccgctcgtgcagatcatgtggtctactgacatcctaatatcaaatataactttacaagattctcccttttggacactccatccatatgactgcaagaatgtaacaatcaggaatgttacaatcctggcacccattgctggggctccgaatactgatggcatagatccagattcttgtgaagatgtgttgatagagaactgttacatcagcgttggtgatgatggcatcgcaataaagagtggatgggatcagtatggaattgcttatggacgaccttcaaagaatatactcattcgaaaccttgtcattcgttccaatgtcagtgctggtgtatcaataggaagtgagatgtctggtggagtgtcaaatgtcactgtggaaaacctctttatctggaactcaagacgtgctgtacgcatcaaaacagcacctggaagaggaggatacgttcgagatataacatacaagaacttgacatttgaaaacgttagggtgggaatcgtcatcaaaacagattacaatgaacatgctgacgagagttttgaccccaaagctgtcccattactggaaaacataagctacacaacaatccacggtgagggagttcgcgtgcctgttcaaatccacggtagcaaagaaatctgggtgagaaacgtcacttttagagatatgtcgattgggttaacatacaagaagaagcatatattccagtgtgcttacgttcaaggtcgtgttatagggactatcttccctgctccttgcaagaacctcgatctatatgacgaacaaggacatctgatcagacgttctgatgctcaaaacgcaacagacatagattatgacatttgaactgattccacggaatgccttcatagcgggagcttatgcaccgggcagtgttttattttattttctcattacattttgttctctgcattatacatacagaaccaagtcccttttgatgtattcaaaaaacccacagatccaatgtaaagaacacttcctttgttcctgtacagaatcttagttccatcaaagtaatgtttttaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="56552" stop="53770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56244" g_stop="55996" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="268" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55995" i_stop="55552" i_length="444">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55551" g_stop="55398" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="422" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55397" i_stop="54803" i_length="595">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54802" g_stop="54070" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="1154" r_length="732" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-U585088" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1136</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56244" e_stop="55996"/>
          <exon e_start="55551" e_stop="55398"/>
          <exon e_start="54802" e_stop="54070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATAATGGTACAATTAATGGGCAGGGTCAAGCATGGTGGAAGAAATTCCGGCAGAAGCTTCTTAACCATTCCCGAGGACCGCTCGTGCAGATCATGTGGTCTACTGACATCCTAATATCAAATATAACTTTACAAGATTCTCCCTTTTGGACACTCCATCCATATGACTGCAAGAATGTAACAATCAGGAATGTTACAATCCTGGCACCCATTGCTGGGGCTCCGAATACTGATGGCATAGATCCAGGTGAGTCTTTGATAGGTTTAAATATATCTTAGGGTTAGTTAAGACATAGCCAACATAGATATATCTATTTTGCTATCATATTTTCCCTGCTTCAAAAACTTCTCTTCTGAATCGAGGGTCTATTGGAAACAGCCACCCTACCCCACAAAGGTAGGGGTAAGGTCTGCGTACATTCTACCCTTCCCAGACCCCACTTGTGGGACTTCATTGGGTATGTTGTTGTTAGTTAAGCAGCTCAAGTTTTGACATATTAATTTGCTATATCTTTCAGTTCAATGCGATCCTTTTTTGCAAAAAAATTAAGTTCTGAACAGGGTTTTGCTGAAATGTGAATCTGATGTTGACATTACTCTAATATCCACTCTTGATACTTTCTTATACTTCTTATTTTCTGTTACCAGCCCCTCAGTATAAGCTTCTAATGTATTTTAATGGAGTGATCAGATTCTTGTGAAGATGTGTTGATAGAGAACTGTTACATCAGCGTTGGTGATGATGGCATCGCAATAAAGAGTGGATGGGATCAGTATGGAATTGCTTATGGACGACCTTCAAAGAATATACTCATTCGAAACCTTGTCATTCGTTCCAATGTCAGGTGAGGTTTCCATATAGGCATGATCATTTACATTGCTTTCATGATTGGATGTGTCTGAGAACAATTGCATCCGGGGGTGTTATAGATGTTCAAAAAATCAAATCCCTTTTTTCCTTTCGTACATTTGAGCAAATGTTCTTTGAACATTGACAGTTGGCCTGCTGGTCAGCCACTTGTTGGTTTGATGAGGCATAACCTTTTTTTGGTCAACGATCATTTTAGTAACGTCTTGCAACTATTACCGGACTGAAGTTGAGTTGATTGATGATTGAAGGCGTAACACATAAAGAGACACTCAGACTTCAAACTTTGAGAGTACACATATAGACACCTCAACATGTATTCCATTGTGTCAGTTAAACACTCCAACTTACAAAGTGATCATCTAGACACCTCCAAAAATTGTGTCACGTCAGCTTAGGGTGTCCGCGAGACATAATGGGGGACGAGTTGGAGTATTTAGTTGTCAGTTGAGGTGTCTAGATGTGCCCTCTCAAAGTTGGATGGCTTGCCAGTGGAGGCCATGTTTGAGTACATATTTATGATTTATGCCAATATATTACTAGGATCTAACTCTGGGTGAGCTACATTGCAGTGCTGGTGTATCAATAGGAAGTGAGATGTCTGGTGGAGTGTCAAATGTCACTGTGGAAAACCTCTTTATCTGGAACTCAAGACGTGCTGTACGCATCAAAACAGCACCTGGAAGAGGAGGATACGTTCGAGATATAACATACAAGAACTTGACATTTGAAAACGTTAGGGTGGGAATCGTCATCAAAACAGATTACAATGAACATGCTGACGAGAGTTTTGACCCCAAAGCTGTCCCATTACTGGAAAACATAAGCTACACAACAATCCACGGTGAGGGAGTTCGCGTGCCTGTTCAAATCCACGGTAGCAAAGAAATCTGGGTGAGAAACGTCACTTTTAGAGATATGTCGATTGGGTTAACATACAAGAAGAAGCATATATTCCAGTGTGCTTACGTTCAAGGTCGTGTTATAGGGACTATCTTCCCTGCTCCTTGCAAGAACCTCGATCTATATGACGAACAAGGACATCTGATCAGACGTTCTGATGCTCAAAACGCAACAGACATAGATTATGACATTTGAACTGATTCCACGGAATGCCTTCATAGCGGGAGCTTAGTGCACCGGGCAGTGTTTTATTTTATTTTCTCATTACATTTTGTTCTCTGCATTATACATACAGAACCAAGTCCCTTTTGATGTATTCAAAAAACCCACAGATCCAATGTAAAGAACACTTCCTTTGTTCCTGTACAGAATCTTAGTTCCATCAAAGTAATGTTTTTAACT</genome_strand>
        <mrna_strand>GGCATAATGGTACAATTAATGGGCAGGGTCAAGCATGGTGGAAGAAATTCCGGCAGAAGCTTCTTAACCATTCCCGAGGACCGCTCGTGCAGATCATGTGGTCTACTGACATCCTAATATCAAATATAACTTTACAAGATTCTCCCTTTTGGACACTCCATCCATATGACTGCAAGAATGTAACAATCAGGAATGTTACAATCCTGGCACCCATTGCTGGGGCTCCGAATACTGATGGCATAGATCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGTGAAGATGTGTTGATAGAGAACTGTTACATCAGCGTTGGTGATGATGGCATCGCAATAAAGAGTGGATGGGATCAGTATGGAATTGCTTATGGACGACCTTCAAAGAATATACTCATTCGAAACCTTGTCATTCGTTCCAATGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGTGTATCAATAGGAAGTGAGATGTCTGGTGGAGTGTCAAATGTCACTGTGGAAAACCTCTTTATCTGGAACTCAAGACGTGCTGTACGCATCAAAACAGCACCTGGAAGAGGAGGATACGTTCGAGATATAACATACAAGAACTTGACATTTGAAAACGTTAGGGTGGGAATCGTCATCAAAACAGATTACAATGAACATGCTGACGAGAGTTTTGACCCCAAAGCTGTCCCATTACTGGAAAACATAAGCTACACAACAATCCACGGTGAGGGAGTTCGCGTGCCTGTTCAAATCCACGGTAGCAAAGAAATCTGGGTGAGAAACGTCACTTTTAGAGATATGTCGATTGGGTTAACATACAAGAAGAAGCATATATTCCAGTGTGCTTACGTTCAAGGTCGTGTTATAGGGACTATCTTCCCTGCTCCTTGCAAGAACCTCGATCTATATGACGAACAAGGACATCTGATCAGACGTTCTGATGCTCAAAACGCAACAGACATAGATTATGACATTTGAACTGATTCCACGGAATGCCTTCATAGCGGGAGCTTA-TGCACCGGGCAGTGTTTTATTTTATTTTCTCATTACATTTTGTTCTCTGCATTATACATACAGAACCAAGTCCCTTTTGATGTATTCAAAAAACCCACAGATCCAATGTAAAGAACACTTCCTTTGTTCCTGTACAGAATCTTAGTTCCATCAAAGTAATGTTTTTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U575278" ref_strand="+" ref_description="SGN-U575278 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|147795580|emb|CAN69988.1| (e_value=1e-26) hypothetical; (*ATH) AT1G19170.1 (e_value=4e-22)  Symbol: None | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein, low similarity to SP:P27644 Polygalacturonase (EC 3.2.1.15) (Pectinase) {Agrobacterium tumefaciens}; contains PF00295: Glycosyl hydrolases family 28... ; ">
      <seq>ttaggcgccttgattaacactaaacctttttgtgttaatcaaaaatcaattaaccatcaaaactatattgttctagtcttcttcttcttcctttgaatgtactcaaccattccactaatcctgaccactacacttcaccttccaattcttgaaactccattaatgaatctttaaaccccatttgatttcttgatgtttcccacttagcaatttatagaaagtttaaaaattgaatctttgattggttctaggaattgggttgttcataattttctgtattaagatcccaagattaattcttttttggtatattatatggtggaaacagtgacatcgtcgttttggtggcggtggacgcaaccccatcaccacccacgtcgatgggtgccgtcagttttcaccacccacaaagccattatcactgctgtgtggatcgctttcttggtaaccgttttctggtggcaggttgatgctaccgccggaatcttgattttccggcgggttttcccggcgagggaggtgccgaagttccggccggtggcgtttaacttgacggactttggtggggttggggatggtgtaactgttaatacggaggcgtttgagaaggcaatattagctattgctaaacttgggaagaaaggtggagggcagctcaatgtgccaccgggatattggctgacggctccgtttaatcttactagccatatgactctgttccttgctgagggagctgntatattgggtattgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="60999" stop="59646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60699" g_stop="59947" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-U575278" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60699" e_stop="59947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGCGCCTTGATTAACACTAAACCTTTTTGTGTTAATCAAAAATCAATTAACCATCAAAACTATATTGTTCTAGTCTTCTTCTTCTTCCTTTGAATGTACTCAACCATTCCACTAATCCTGACCACTACACTTCACCTTCCAATTCTTGAAACTCCATTAATGAATCTTTAAACCCCATTTGATTTCTTGATGTTTCCCACTTAGCAATTTATAGAAAGTTTAAAAATTGAATCTTTGATTGGTTCTAGGAATTGGGTTGTTCATAATTTTCTGTATTAAGATCCCAAGATTAATTCTTTTTTGGTATATTATATGGTGGAAACAGTGACATCGTCGTTTTGGTGGCGGTGGACGCAACCCCATCACCACCCACGTCGATGGGTGCCGTCAGTTTTCACCACCCACAAAGCCATTATCACTGCTGTGTGGATCGCTTTCTTGGTAACCGTTTTCTGGTGGCAGGTTGATGCTACCGCCGGAATCTTGATTTTCCGGCGGGTTTTCCCGGCGAGGGAGGTGCCGAAGTTCCGGCCGGTGGCGTTTAACTTGACGGACTTTGGTGGGGTTGGGGATGGTGTAACTGTTAATACGGAGGCGTTTGAGAAGGCAATATTAGCTATTGCTAAACTTGGGAAGAAAGGTGGAGGGCAGCTCAATGTGCCACCGGGATATTGGCTGACGGCTCCGTTTAATCTTACTAGCCATATGACTCTGTTCCTTGCTGAGGGAGCTGTTATATTGGGTATTGAT</genome_strand>
        <mrna_strand>TTAGGCGCCTTGATTAACACTAAACCTTTTTGTGTTAATCAAAAATCAATTAACCATCAAAACTATATTGTTCTAGTCTTCTTCTTCTTCCTTTGAATGTACTCAACCATTCCACTAATCCTGACCACTACACTTCACCTTCCAATTCTTGAAACTCCATTAATGAATCTTTAAACCCCATTTGATTTCTTGATGTTTCCCACTTAGCAATTTATAGAAAGTTTAAAAATTGAATCTTTGATTGGTTCTAGGAATTGGGTTGTTCATAATTTTCTGTATTAAGATCCCAAGATTAATTCTTTTTTGGTATATTATATGGTGGAAACAGTGACATCGTCGTTTTGGTGGCGGTGGACGCAACCCCATCACCACCCACGTCGATGGGTGCCGTCAGTTTTCACCACCCACAAAGCCATTATCACTGCTGTGTGGATCGCTTTCTTGGTAACCGTTTTCTGGTGGCAGGTTGATGCTACCGCCGGAATCTTGATTTTCCGGCGGGTTTTCCCGGCGAGGGAGGTGCCGAAGTTCCGGCCGGTGGCGTTTAACTTGACGGACTTTGGTGGGGTTGGGGATGGTGTAACTGTTAATACGGAGGCGTTTGAGAAGGCAATATTAGCTATTGCTAAACTTGGGAAGAAAGGTGGAGGGCAGCTCAATGTGCCACCGGGATATTGGCTGACGGCTCCGTTTAATCTTACTAGCCATATGACTCTGTTCCTTGCTGAGGGAGCTGNTATATTGGGTATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U603903" ref_strand="+" ref_description="SGN-U603903 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157342500|emb|CAO65212.1| (e_value=3e-48) unnamed; (*ATH) AT1G19150.1 (e_value=1e-45)  Symbol: None | chlorophyll A-B binding protein, putative / LHCI type II, putative, very strong similarity to PSI type II chlorophyll a/b-binding protein Lhca2*1 GI:541565 from (Arabidopsis thaliana); contains Pfam profile: PF00504 chlorophyll A-B bi... ; (*SWP) sp|P13869|CB12_PETHY (e_value=1e-31) Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida; ">
      <seq>tccacagctttttctagcatcccaatcagggagctacctacaaaaactttttcagggaaatttacaacatgtatgttgtctagaaaaagtagattgtatgctggtaaagaagtgtcaagtgtttgtgaaccacttcctccagataggccactatggtttcctggaagttcacctcctgaatggcttgatggcagtttgcctggagattttggctttgatccactgggactagggtctgatccagagtcactgaaatggtttgctcaagctgagctaatacacagcagatgggcaatgttagcagtatctggaattctaatcccagaatggttagaaagtcttggattcatcgacaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="63186" stop="65849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63486" g_stop="63514" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63515" i_stop="64056" i_length="542">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64057" g_stop="64221" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="194" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64222" i_stop="64896" i_length="675">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64897" g_stop="64934" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="232" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64935" i_stop="65421" i_length="487">
            <donor d_prob="0.965" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65422" g_stop="65549" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="360" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-U603903" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63486" e_stop="63514"/>
          <exon e_start="64057" e_stop="64221"/>
          <exon e_start="64897" e_stop="64934"/>
          <exon e_start="65422" e_stop="65549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACAGCTTTTTCTAGCATCCCAATCAGGTTAGTACCATAAATTTAACACTTTTTCTACTTTTTTTTTGGTTGCACGAATTAAATATTTGTTAAATTGCGTAACTATCTTATCTTAAAGTTTAAGTTAGTAGAGAAAACGCTTTTTTAGTTGCTTAATAATGCATAAACATGCTCTTAACCTGATTTCAGTGGATAATTATGTCCTCTAACTTTCAGTGTGCATAGTAGACACTTAAGTTGGACACAAAATTATCATATAGAACAGATGTGTTTATTTGTTTAATTTTATAAATGTTTAGGTGTATACTCGTGCACACCCAAAGTTAAAAGATCATAGTTGTCAACTGACGCCAATTTAAAGGTCATGTTTATGTATTATGTCACTGTGTTATATATATTTCAATTTGCCACGCTTCTGCGCCTCACATGTGACTCTGATTCTTTTTTATTAATCAAATGTTGAAATGCATTTTTGCCTTTTAGGCCTGTATAATGATTAAACTAATAGATTGTTAATTACTTAATTATATTACGTCTCAACGGATTCTGATTTTTTTTTCTTGATTCAGGGAGCTACCTACAAAAACTTTTTCAGGGAAATTTACAACATGTATGTTGTCTAGAAAAAGTAGATTGTATGCTGGTAAAGAAGTGTCAAGTGTTTGTGAACCACTTCCTCCAGATAGGCCACTATGGTTTCCTGGAAGTTCACCTCCAGAATGGCTTGATGGCAGGTCACATTAACCTCGCATTCTCTCTGTTTCAATTTATTTGTCTTACTTTTTTTTTAGTCTGTTTTTAAAAAATGAGAAAAAGGACAAATATATCCCAAACTATCGTAAATGGTATGCAGATATCTTTCGTTATACTTTTGGGGCGTTGATGCCCCTGACCTTAAAAAATTAGAGCATATATATCCTTCACTCTAACGGAAGACTAAATAGGGAGACGTGACATGGTTTTATCTTTCAAACCGATGTTTAATAAATGTCGGCTCCGCGGATAAGATTATGACATGTGTATGTCTGTTAGTATAAATGGTATATATGCTTTAGTTTTTAAACGGCAGGGAGTGTCGTAAAAGTATGACGGAGAGTATCTGCATACTATTACCGATAGTTCGGGGGTATATTTGTCTCTTTTTTTTTCTAAAAATAAAAGAATGTCTCTTTCCTTTTTTAACAACTAGAACTTTCCACATGACATGTTTAAGACCGTGATATTAAAGAACATTTAATATGTACTACGGATGTTTAATTTAAAATCACAAGATTAAAAAATCGTATTTACTTTCTTAAATTCTGCGTTAAGTCAAAACCAGACAGACAAATGTTTTTTTAGTGTATTTTCCTCTTTCTAATTGCTTCATTTGCAAATTTTTGATTTGTTTTCTTGTTCTTGAATTGCAGTTTGCCTGGAGATTTTGGCTTTGATCCACTGGGACTAGGTACATAACATATAAGTTACTATTGAAAATTATGAGAAAGATTGAATTTTGATGCAATTCTTGGAGTAAAATGAGGAAGACTACATGTCAGATTCAAGTTTTAGTAGGGTCGGAACTTATCCAACGAAGAATTTCACTACCTTAGGACCGTTATAGTTACAATTTAGTCACTACCTCCCCTGTTTTAGCAGGGTCGGAACTTACCCAACGAGGAATTTCACTACCTTAGGACCGTTACAGTTACAATTTGGTCACTAGCTCCCATGTTATCAGGTTACCAACTTCCTTGACCTTCGGGCACTGAGTAGGCATTAGCCTCTATACATGGTCTTACCACTTTACGGTGGCTTGTGTTTTTGGCAAACAATCGCCCAGACATGGTCACTCCTACTTTTTGACGAGACGTTACATCCAGATAACTGTTTTCGTTCTCTTTTTTCATTTCGTTATATTCTTTTAATGACCGATAACTTTTTCGTTCTTTCAGGGTCTGATCCAGAGTCACTGAAATGGTTTGCTCAAGCTGAGCTAATACACAGCAGATGGGCAATGTTAGCAGTATCTGGAATTCTAATCCCAGAATGGTTAGAAAGTCTTGGATTCATCGACAACTTT</genome_strand>
        <mrna_strand>TCCACAGCTTTTTCTAGCATCCCAATCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTACCTACAAAAACTTTTTCAGGGAAATTTACAACATGTATGTTGTCTAGAAAAAGTAGATTGTATGCTGGTAAAGAAGTGTCAAGTGTTTGTGAACCACTTCCTCCAGATAGGCCACTATGGTTTCCTGGAAGTTCACCTCCTGAATGGCTTGATGGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCTGGAGATTTTGGCTTTGATCCACTGGGACTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGATCCAGAGTCACTGAAATGGTTTGCTCAAGCTGAGCTAATACACAGCAGATGGGCAATGTTAGCAGTATCTGGAATTCTAATCCCAGAATGGTTAGAAAGTCTTGGATTCATCGACAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U582191" ref_strand="+" ref_description="SGN-U582191 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|13506810|gb|AAK28345.1|AF243040_1 (e_value=4e-48) receptor-like; (*ATH) AT1G72460.1 (e_value=4e-37) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, contains Pfam profiles: PF00560 leucine rich repeat (5 copies), PF00069 eukaryotic protein kinase domain | chr1:27283172-27285195 FORWARD | Aliases: T10D10.7, T10D10_7; ">
      <seq>gcatacacctatccctccacacaaatctttgtcaaaacaacaacaccccaccctcacccccaccacacatgatcattccagggtccaaaacaaccaaaccaatatcaagaaaattatcaaacaccttcaaagaaaagaaaaagagaagcatttgcagattgtttctataaggggaaggtggacatgtctagtaacaaacatggccgccgttcccctaacccttcatctccttcctcgagcatcgtctcctaaaaaacaccatcttttccttattcatatatccattttcttcctcattactctatgtaatccacaattttctttctccatttccgaggacgatgccttgatcaaattcaaaaaatctttaaagaacaccacatctctagattcatcttgggttaaaggtactaatccatgtgaaaaaaacaagagatgggctcgtgttcaatgcgaacgtaacgtggttgaaggcctccttttaggtgaagctggcttatcaggagaacttgatattgatccattgattgcacttccaggcctccgagttcttgatatcgcgaataattcattttcaggcttaatccctgaattcttcttgcttggtgcacttaaatctatatatatagatggaaaccaattctcaggtgagattcctaaagatttctttgccaaaatggggtctcttaagaagatatggcttgcacgaaacaaattttccggagcaattcctgaatcattagccagcttgaagtacttgatggaacttcgacttgaaagtaatgcattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="66370" stop="67759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66669" g_stop="67459" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="791" r_length="791" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-U582191" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66669" e_stop="67459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACACCTATCCCTCCACACAAATCTTTGTCAAAACAACAACACCCCACCCCCACCCCCACCACACATGATCATTCCAGGGTCCAAAACAACCAAACCAATATCAAGAAAATTATCAAACACCTTCAAAGAAAAGAAAAAGAGAAGCATTTGCAGATTGTTTCTATAAGGGGGAGGTGGACATGTCTAGTAACAAACATGGCCGCCGTTCCCCTAACCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTTCTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAGTCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTGAAGGCCTCCTTTTAGGTGAAGCTGGCTTATCAGGAGAACTTGATATTGATCCATTGATTGCACTTCCAGGCCTCCGAGTTCTTGATATCGCGAATAATTCATTTTCAGGCTTAATCCCTGAATTCTTCTTGCTTGGTGCACTTAAATCTATATATATAGATGGAAACCAATTCTCAGGTGAGATTCCTAAAGATTTCTTTGCCAAAATGGGGTCTCTTAAGAAGATATGGCTTGCACGAAACAAATTTTCCGGAGCAATTCCTGAATCATTAGCCAGCTTGAAGTACTTGATGGAACTTCGACTTGAAAGTAATGCATTTA</genome_strand>
        <mrna_strand>GCATACACCTATCCCTCCACACAAATCTTTGTCAAAACAACAACACCCCACCCTCACCCCCACCACACATGATCATTCCAGGGTCCAAAACAACCAAACCAATATCAAGAAAATTATCAAACACCTTCAAAGAAAAGAAAAAGAGAAGCATTTGCAGATTGTTTCTATAAGGGGAAGGTGGACATGTCTAGTAACAAACATGGCCGCCGTTCCCCTAACCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTACTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAATCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTGAAGGCCTCCTTTTAGGTGAAGCTGGCTTATCAGGAGAACTTGATATTGATCCATTGATTGCACTTCCAGGCCTCCGAGTTCTTGATATCGCGAATAATTCATTTTCAGGCTTAATCCCTGAATTCTTCTTGCTTGGTGCACTTAAATCTATATATATAGATGGAAACCAATTCTCAGGTGAGATTCCTAAAGATTTCTTTGCCAAAATGGGGTCTCTTAAGAAGATATGGCTTGCACGAAACAAATTTTCCGGAGCAATTCCTGAATCATTAGCCAGCTTGAAGTACTTGATGGAACTTCGACTTGAAAGTAATGCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U602074" ref_strand="+" ref_description="SGN-U602074 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|13924730|gb|AAK49115.1|AF252415_1 (e_value=2e-16) receptor-like; ">
      <seq>cttgggaaagagaaccttgatgaggggttgcacattgcaagctcgattaggaagagcatgagtattcatagcaaaggaggtgattctattcgtggaggatcaacacgaaggggaggaggatcacaaagtggtaaggctatgggagatctcgtgttagtgaacaacgaaaatggtacattcggattgcctgatttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="67447" stop="68244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67747" g_stop="67944" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-U602074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67747" e_stop="67944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGGAAAGAGAACCTTGATGAGGGGTTGCACATTGCAAGCTCGATTAGGAAGAGCATGAGTATTCATAGCAAAGGAGGTGATTCTATTCGTGGAGGATCAACACGAAGGGGAGGAGGATCACAAAGTGGTAAGGCTATGGGAGATCTCGTGTTAGTGAACAACGAAAATGGTACATTCGGATTGCCTGATTTGATG</genome_strand>
        <mrna_strand>CTTGGGAAAGAGAACCTTGATGAGGGGTTGCACATTGCAAGCTCGATTAGGAAGAGCATGAGTATTCATAGCAAAGGAGGTGATTCTATTCGTGGAGGATCAACACGAAGGGGAGGAGGATCACAAAGTGGTAAGGCTATGGGAGATCTCGTGTTAGTGAACAACGAAAATGGTACATTCGGATTGCCTGATTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U584522" ref_strand="+" ref_description="SGN-U584522 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|13506810|gb|AAK28345.1|AF243040_1 (e_value=2e-49) receptor-like; (*ATH) AT5G20690.1 (e_value=1e-48) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, receptor-like protein kinase PRK1, tomato, PIR:T07865 | chr5:7002455-7004553 FORWARD | Aliases: T1M15.90, T1M15_90; (*SWP) sp|Q9M8T0|Y3288_ARATH (e_value=1e-22) Probable inactive receptor kinase At3g02880 OS=Arabidopsis thaliana GN=At3g02880; ">
      <seq>gatacagtaaactctgttttgtttggcaaatgaagtgagtcgagagacgttgtagagtttaactgagataaaacggaatcaaatgaggctataaggatcgctctcttctggcatgtaacgtaactaaagctttcacacgaaaatctactaacctttcgtgttatgttcattatcatattaaacttatctcttctatcctccttaatgcttccttcatatcaatcctcttatccggatcgcttatagtacaagcagctcctacatgaaggagtttcaccatttgttcaacggaatctgttgcagacgctatctctggatcaatcaattcggattctctttggtcagctatagctgattgcacccattgaacaacatccggtccacctttttgattgttgagatactgagaaggaaatttccctgtaaggatttctagtattatgattccaagacaatatatgtcacattttggagtgagatgttgatgttgtgtggcttctggtgctttatacgcgaaaagggattgaactatttgtgtgttgttgatcagtggatagaaggcgtaatctgataaaagtggctcgtattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="69819" stop="68629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69519" g_stop="68929" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-U584522" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69519" e_stop="68929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACAGTAAACTCTGTTTTGTTTGGCAAATGAAGTGAGTCGAGAGACGTTGTAGAGTTTAACTGAGATAAAACGGAATCAAATGAGGCTATAAGGATCGCTCTCTTCTGGCATGTAACGTAACTAAAGCTTTCACACGAAAATCTACTAACCTTTCGTGTTATGTTCATTATCATATTAAACTTATCTCTTCTATCCTCCTTAATGCTTCCTTCATATCAATCCTCTTATCCGGATCGCTTATAGTACAAGCAGCTCCTACATGAAGGAGTTTCACCATTTGTTCAACGGAATCTGTTGCAGACGCTATCTCTGGATCAATCAATTCGGATTCTCTTTGGTCAGCTATAGCTGATTGCACCCATTGAACAACATCCGTTCCACCTTTTTGATTGTTGAGATACTGAGAAGGAAATTTCCCTGTAAGGATTTCTAGTATTATGATTCCAAGACAATATATGTCACATTTTGGAGTGAGATGTTGATGTTGTGTGGCTTCTGGTGCTTTATACGCGAAAAGGGATTGAACTATTTGTGTGTTGTTGATCAGTGGATAGAAGGCGTAATCTGATAGAAGTGGCTCGTATTTTC</genome_strand>
        <mrna_strand>GATACAGTAAACTCTGTTTTGTTTGGCAAATGAAGTGAGTCGAGAGACGTTGTAGAGTTTAACTGAGATAAAACGGAATCAAATGAGGCTATAAGGATCGCTCTCTTCTGGCATGTAACGTAACTAAAGCTTTCACACGAAAATCTACTAACCTTTCGTGTTATGTTCATTATCATATTAAACTTATCTCTTCTATCCTCCTTAATGCTTCCTTCATATCAATCCTCTTATCCGGATCGCTTATAGTACAAGCAGCTCCTACATGAAGGAGTTTCACCATTTGTTCAACGGAATCTGTTGCAGACGCTATCTCTGGATCAATCAATTCGGATTCTCTTTGGTCAGCTATAGCTGATTGCACCCATTGAACAACATCCGGTCCACCTTTTTGATTGTTGAGATACTGAGAAGGAAATTTCCCTGTAAGGATTTCTAGTATTATGATTCCAAGACAATATATGTCACATTTTGGAGTGAGATGTTGATGTTGTGTGGCTTCTGGTGCTTTATACGCGAAAAGGGATTGAACTATTTGTGTGTTGTTGATCAGTGGATAGAAGGCGTAATCTGATAAAAGTGGCTCGTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U572921" ref_strand="+" ref_description="SGN-U572921 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|118485340|gb|ABK94529.1| (e_value=3e-75) unknown; (*ATH) AT1G19130.1 (e_value=7e-30) | Symbol: None | expressed protein | chr1:6609360-6610593 REVERSE | Aliases: F14D16.29, F14D16_29; ">
      <seq>gaggagccaaaaacttaaaaaaaataaaacaaaaatggcatcaaattctacagagcctacagcttcaaaaattgttgctaagctaaacttgaaggtacatccagaagggggattttactcagaaacatttagagataactcagttattctctccagatctcatcttccatctacatataaggttgatcgacctgtcagtacatgcatctacttcttgctaccttctggaagtgcgtctcatcttcaccggataccttgtgcagaaacatggcatttttatatgggagagccaatcactgtgatggagctaaacgaaactgatggcaaggtgaagttaacttgcgttggacccgatcccctcgtagatgatcaattcgtgcagtatacagtacctccaaatgtatggtttggcgcatttcccacgaaggattacaacatatcttccgatatgcaagtaacgaaagcacctacaagagatggtgagaaacatttctctctagttggatgcacttgtgctccagcattccagtttgaagattttgaattagcaaaacgttctgatcttgtctcgcgttttcctgcccacgaatcccttgtctctttgctagccttccctgatctgtgagagatatgtattcaatggcggatctagagcataatctacgggttttacataacctagtagctttttcgcggaccttgtaaaatatctatatatatttgattcttgtttcctgtttcatcttattacttgtgtgttatgtgttcagagtggcaataaaaggcaatgagtagagttattttgtgtaagttcagaatgctttgttttgctttcacttccgtttattctttttcggaatattggttttccctgaatcgaggtatatcagaaacagtctctctctacctatgaggtaaggtaaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="70199" stop="73950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70499" g_stop="70674" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70675" i_stop="72192" i_length="1518">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72193" g_stop="72314" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="298" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72315" i_stop="73020" i_length="706">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73021" g_stop="73650" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="928" r_length="630" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-U572921" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>928</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70499" e_stop="70674"/>
          <exon e_start="72193" e_stop="72314"/>
          <exon e_start="73021" e_stop="73650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGCCAAAAACTTAAAAAAAATAAAACAAAAATGGCATCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACATGTAAGTTTTTTTTTTTTTTTTTGTATAAATTTAATTTACTTTTTGGATCTTGAATTTCTTAGATCCCTCATGAGATTTTTGGATCTTAGATCTGTTTTTCATCCATATGTTTTTAGGATGTTTACTTGGATATTGCTATATGAAGTGTGATGGATATGTGATTTGGACTTTTAGGATCTCAAATTGCCCCCAAAAACCATGATTTGGAAATGGTAGTAACAAAAGAAATTTAATATGTAAAAAATTAGACGTAATACGTAAATATACCCTTTATTTTAACTTCATTTTACATTTACGCCCTTTAATTTTGATTGTGCACAAATCGACACTTAAACTCTTATAAAGTTAAACAAATAGACACACGAGTCCTACATGTCACAATACACGTAGGACACAAATTTTCATGGGCATAATACATAAATATGCCCTTTAACTTGGCTTCGAATCACATATATGCCCTTCAATTTTTGGTTTACACAAGTAGACACTTAAACTTGTATAAAGTAGAACAAGTAGACACACACGTCCTACATGTCATTTTTTGTCCTATGTGGTGTCCTACGTGTATTTTGCAATGTAAGACTCATGTGTTTATTTATTAGTTGGATAGTTAAAGTGTCTGTTTGTGCATTATGAAAGTTAGAGGACAAAGTTAAAATTTGAAACCAAGTTTAGGGTCCATTATATGTATTATGCCTATATAGGATGTCATGCAGGACGTTTGTGTCTATTTGTTTAATTTTATACAAGTTTAAGTGTCTGCTTGTGCACACCCAAAGTTGGAGGGCATAAATCAGAGTGCATGTTAATTTTATGTATTATGCCTAAAAAAAATTAACATGCACTCTGATTTTGCTATTTTGGGTGTGTACAAGCAGTTAATTGAACTTTTATAAAATTGAACAGTAGACACATGAGCATTCTGTGACATAATACGCATAGGACACTACATAGAATTGTTCGTTTTTATACAAGTGTATACCTGTGCGCATTCAATGTTGAAGGGCATAAATGTGAAATGATGCTAAGTTAAAAGGGCATATTTATGTATTATGCCTATTTTAAATTTTGTAGAAAGATATTCGTGTTCGGTTGTTTGAATTATATACAAGGAATAACTAGTTACTACTTTTATTGATTTGTAGATCTTTATGACATTATGCGTACTTAGAAGTTCGTCATCACAAATATCTATTTATAAAAGAAACATGAAGATATGTAATTTATTTATGGGCTTAAGATATTTCGATATTCTGTTTCTTAATTTTACTATCTCATATGTATCACCAGCAACATTTGCAGTGGTGTAACCAGTATTTCATTAAGCAAATGAAAAGCATAAGGAGGTTCAATATCTGCTATATATATCTGCATAAACCGTATAACTTTCCGCGATCTGAACCCCTTGACCTCACCGACCTCACCTGGTTCCGTCCTTGAGCATTTGCTTCATAAGATAGAGTACTATCAAATTAGTTAGTTGTTTTTTCCCTGATGTTTCGGGTTTCACCATTGCAGATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACTGTGAGATCATCTTTCCCGCAGTCTACTTTATGCACCAGATTAGGATTATCTCTGTGCTGTTCTGTATATTTATGTCATGCGTTGTGTGTTAAGGCTTAATACGTAAACAAACACTTAAACTTGGCCTCAGCTGGGAAGTAAACACTCCAACTTTGAGAGTGCACATCTACACGTGCACCTCAGACTCGTCTCCATTGTGTCATTTGAGCCACTCCAACTTACGAAATGATCATCTAGACACCCTCCAATATTTATATCTCACGTCAACTTGGATGTTCCATAAGACACGGTTATGACGAGTTTGAGTGATAAGTTATAAGTTGAAACCAAATTGAGGAATCTCTCTAAGTTGGAGTACTAAATTGTTAGCTGAGCCCGAGGCCAAGTTTGGATATATGTTTATGTATTATGCCTTGTGTTTTGGTGTGAACTGAAAGGGATTTGACTAACACTCAAAAGTGTTAATAAAACTTGTAAGGACTATAAGGGTCGTTAAGATTCGTTGCCTAAATAGGAAAGAGACCGCCTTTCTGAAACAGACTAAAAAGGAAAGTAATACAGGCAAATTGATACATTGGATCTTCATAATCATCTTGTTCTTTACGATAATTGAACATTTGTTGCTCCCCGGTAAGAGTGATGAACTAGTCATTCACCAATGTTTTCCTAGAAATGACGATAATGACAACACTTCTTGTGCTTTCAGGTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAGATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGCCCACGAATCCCTTGTCTCTTTGCTAGCCTTCCCTGATCTGTGAGAGATATGTATTCAATGGCGGATCTAGAGCATAATCTACGGGTTTTACATAACCTAGTAGCTTTTTCGCGGACCTTGTAAAATATCTATATATATTTGATTCTTGTTTCCTGTTTCATCTTATTACTTGTGTGTTATGTGTTCAGAGTGGCAATAAAAGGCAATGAGTAGAGTTATTTTGTGTAAGTTCAGAATGCTTTGTTTTGCTTTCACTTCCGTTTATTCTTTTTCGGAATATTGGTTTTCCCTGAGTCGAGGTATATCAGAAACAGTCTCTCTCTACCTATGAGGTAAGGTAAAGTTT</genome_strand>
        <mrna_strand>GAGGAGCCAAAAACTTAAAAAAAATAAAACAAAAATGGCATCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAGATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGCCCACGAATCCCTTGTCTCTTTGCTAGCCTTCCCTGATCTGTGAGAGATATGTATTCAATGGCGGATCTAGAGCATAATCTACGGGTTTTACATAACCTAGTAGCTTTTTCGCGGACCTTGTAAAATATCTATATATATTTGATTCTTGTTTCCTGTTTCATCTTATTACTTGTGTGTTATGTGTTCAGAGTGGCAATAAAAGGCAATGAGTAGAGTTATTTTGTGTAAGTTCAGAATGCTTTGTTTTGCTTTCACTTCCGTTTATTCTTTTTCGGAATATTGGTTTTCCCTGAATCGAGGTATATCAGAAACAGTCTCTCTCTACCTATGAGGTAAGGTAAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U567137" ref_strand="+" ref_description="SGN-U567137 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157342509|emb|CAO65221.1| (e_value=8e-46) unnamed; (*ATH) AT1G19110.1 (e_value=9e-46)  Symbol: None | inter-alpha-trypsin inhibitor heavy chain-related, similar to SP:Q61704 Inter-alpha-trypsin inhibitor heavy chain H3 precursor {Mus musculus}; contains Pfam profile PF00092: von Willebrand factor type A domain | chr1:6602117-6605899 F... ; ">
      <seq>tagtctccttactgatgtgtctggctatgatcgacagattttgtgataggtgtatcccgctcaaattccagacctttcatctgaaggacctgtagtcttatcaggtagataccaaggagtgtttcctgagatgctaaaagctaaaggaatattaacagacatgagtaatttctcggtggagctgaaaggtttcaagtccaaagccatacctcttgacaaggcaagggtgaagcagcagattgaaatactcacagctcaggcatggtttacacaaaataaggatcttgaaaaaaagatagcaaaaatgagtatacaagacgccgtcatctctgagtatacacgcatggcattggtggaggcggaaaaagtgaaaatcattaagtcaaccacaaagaggaaggttcattgtgatgatgagaagatagaagaacgcttaatacagaagacaatattactacaatacccaggcttcggttttggtaatctcactgctacaattgagaatattcctcctggagccatcgataaagaggacgaagcagagattattgcaaaagcaacgtctaattgttttgggaagttgtgtggtctatgctgctgttgcagttgctgcattacagcgtgttcgaatatgaatcatcagtgtgcaattgcactcacacaatgtctaggtgcctttggatgtttaggttgcttcgcttattgtcaatactgctgttgtgaaaatcataaataaaaaaaaaagggcagctcgatggactaagctcccactatacgcggggttcggagaatggaccggaccacaagagtctgttgtggagataatcaatgagaagaaaattacaactactcctacaacttcaactttctccccatgattttgtgtcaactaatgacagattataaagttagttgatagtgaacatattcatggttctttttttatcctctccccatatttttgtataattatttttacaatatttttcaatagatacatatttttttctaagaagttgatcatcaatttgtaaataattgtattcaattgtttttgaatgttttttattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="80892" stop="77865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80592" g_stop="80559" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80558" i_stop="80441" i_length="118">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80440" g_stop="80255" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="220" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80254" i_stop="79589" i_length="666">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79588" g_stop="79514" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="295" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79513" i_stop="79361" i_length="153">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79360" g_stop="79256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="400" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79255" i_stop="78837" i_length="419">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78836" g_stop="78165" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="1072" r_length="672" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-U567137" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1072</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80592" e_stop="80559"/>
          <exon e_start="80440" e_stop="80255"/>
          <exon e_start="79588" e_stop="79514"/>
          <exon e_start="79360" e_stop="79256"/>
          <exon e_start="78836" e_stop="78165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCTCCTTACTGATGTGTCTGGCTATGATCGAATGAATATGGAATTGTAATGATTTGTTATGAGCTCTCAGTGTCGTTTTAAAAGACTGCTATAATTAAATTGATGCAGTCTTACCTATGTAACTACATGTTTCCTGAGAAAGAACCGTTAAAATTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAGGTAAGGCAGCATACTCAGTAATAGATGCATAATCAATAGACAATGCATGTTTTGTGGCTTTTGGAATCGCCTGTCAATCTAGACTATTTATCTATATCTGATATTTGATCATAATGATAACTATCTTTCTATGTATTGTTATTGTATCATACATTAGATAAAAAATTGAAGGAGGTTGCTTTCCTTTAATTTCTCTTATATTTTCATCATGGCTTCTTCATTACTATATTCCCTTCTCTTACGTGCTTTGATATGCTATACTTGAGCTGAGGGTCTGTCGGACACAGTCTCTCTACCAGCACGAGGTAGGAGTAAGGTCTCTGTACACCACGCTCCCCAGACCCCACATCCCACTATAGAGTATGTTCTTATTGCTTTGCTTTGTAGGGCTCTTTCTTTGTCAATTTAAAATTTCCGGAGTTAATGAAACTGATCAGCGAAGGGTCACTTTCTTCAAACCATTTCATTCTAATACTAAATAAGGACTCTCTTTATCTATTAGTGCATACCATATTGAGGACAATTGCTCAGTTTATCTGTCTGTTTTCTTGATCGAACTACTGAGAACAGCTTATGGCTTTCCGCTGAACGCCCATATATTAGTGAACTTGGTTTAAGAGGATCCTCTTAAATATTAATTTAATCTCATGTATTTTGAACACGCAGGCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAGGTTACTACTTCCTACTTTTTTATGTTTGAACATGAACGGTTTATCCCGATCCTATATATGACTTCACCCTTTATATTCCTGATGTTGTTCTCAAGTAGTTTTATCAACTTAGCCCTTGTCTTCCGTTACTGAGCCCTTATACTTTGTTAGCAGATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAGGTATGATGGAATTTTTAGAGCTTCAACTTTTGTATCATATTCTGAGTAGACAGTTTGGTAATGATAGAATTCACAAATGGCTAAACTTGCTCAGTTATCACATTTAATATTAACTCATTCGTCTACATGCTAAATGAGTAATGATGATCTCTAGAAGTTCACTTCCGAGATAATGACAATCTGGATAACAAGTCAAATAACTATATCTTGGTATTAGTTTGTGGAATTGAAATCCAGCAAGGGAAATTTAACAGCCTACTAGTGATGTTGTCCTCTGTGTTCTGCCGATGTAAGACTCTTATCCTAAGTTAGGGTGTCGTAGGAAACCTCACACCAGACTAATAAGAAAACATATGGTAAAATGATTCATTTCACTATCACACTCGTCTTCTTTCTGTAACCAAAGCTTAATGAATCAGGTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCATCAGTGTGCAATTGCACTCACACAATGTCTAGGTGCCTTTGGATGTTTAGGTTGCTTCGCTTATTGTCAATACTGCTGTTGTGAAAATCATAAATAAAAAAAAAAGGGCAGCTCGATGGACTAAGCTCCCACTATACGCGGGGTTCGGAGAATGGACCGGACCACAAGAGTCTGTTGTGGAGATAATCAATGAGAAGAAAATTACAACTACTCCTACAACTTCAACTTTCTCCCCATGATTTTGTGTCAACTAATGACAGATTATAAAGTTAGTTGATAGTGAACATATTCATGGTTCTTTTTTTATCCTCTCCCCATATTTTTGTATAATTATTTTTACAATATTTTTCAATAGATACATATTTTTTTCTAAGAAGTTGATCATCAATTTGTAAATAATTGTATTCAATTGTTTTTGAATGTTTTTTATTGG</genome_strand>
        <mrna_strand>TAGTCTCCTTACTGATGTGTCTGGCTATGATCGA......................................................................................................................CAGATTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAG.........................................................................................................................................................ATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCATCAGTGTGCAATTGCACTCACACAATGTCTAGGTGCCTTTGGATGTTTAGGTTGCTTCGCTTATTGTCAATACTGCTGTTGTGAAAATCATAAATAAAAAAAAAAGGGCAGCTCGATGGACTAAGCTCCCACTATACGCGGGGTTCGGAGAATGGACCGGACCACAAGAGTCTGTTGTGGAGATAATCAATGAGAAGAAAATTACAACTACTCCTACAACTTCAACTTTCTCCCCATGATTTTGTGTCAACTAATGACAGATTATAAAGTTAGTTGATAGTGAACATATTCATGGTTCTTTTTTTATCCTCTCCCCATATTTTTGTATAATTATTTTTACAATATTTTTCAATAGATACATATTTTTTTCTAAGAAGTTGATCATCAATTTGTAAATAATTGTATTCAATTGTTTTTGAATGTTTTTTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U598734" ref_strand="+" ref_description="SGN-U598734 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157342509|emb|CAO65221.1| (e_value=2e-33) unnamed; (*ATH) AT1G19110.1 (e_value=1e-33)  Symbol: None | inter-alpha-trypsin inhibitor heavy chain-related, similar to SP:Q61704 Inter-alpha-trypsin inhibitor heavy chain H3 precursor {Mus musculus}; contains Pfam profile PF00092: von Willebrand factor type A domain | chr1:6602117-6605899 F... ; ">
      <seq>agcataagattttattgtatatggcgatttgtttattcgttcaactttattaacttttatgtaatagtgtcctctaattttttttttctgagtcaaaaatttcaaactcaagtgagaaatttgtatggcagccattgctagcaaacttgctaaccgtggcaaaaacgtgttcacttccgatactttctccggtaacaaagtttatatgataacaatatcacaccattaacgtcggccggcgatcanaaaagtttgctccgagaanaanaggaanaaacgaaatcaacatttcggaaaatcctcttcttctccattatatatatataaatattttttttgattttttttcttttattattgnacggatttacgtacaattttgatttgacnnnggcggatcaggaggaatttgtgaaatcggtggaanacgggttgaggttatcgaaacanatatattttgggaaggatcgtgcggttgcgccgccganncanatgacggcgatgganaaaacggcggaatcgtattttccgacttcgcctatgatgtatgctgtgattgagaatcctgcgtttgttgataacccgganataccgagttatcaacctcatgtgcanggaaggtgtgatcctcctgctttgattccgttacagatgaacggagtttcgattgnggcggattgttatttcnatacggcgtnnatcactgttacgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="85502" stop="84189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85202" g_stop="84489" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-U598734" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85202" e_stop="84489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATAAGATTTTATTGTATATGGCGATTTGTTTATTCGTTCAACTTTATTAACTTTTATGTAATAGTGTCCTCTAATTTTTTTTTTCTGAGTCAAAAATTTCAAACTCAAGTGAGAAATTTGTATGGCAGCCATTGCTAGCAAACTTGCTAACCGTGGCAAAAACGTGTTCACTTCCGATACTTTCTCCGGTAACAAAGTTTATATGATAACAATATCACACCATTAACGTCGGCCGGCGATCAGAAAAGTTTGCTCCGAGAAGAAGAGGAAGAAACGAAATCAACATTTCGGAAAATCCTCTTCTTCTCCATTATATATATATAAATATTTTTTTTGATTTTTTTTCTTTTATTATTGTACGGATTTACGTACAATTTTGATTTGACAATGGCGGATCAGGAGGAATTTGTGAAATCGGTGGAAGACGGGTTGAGGTTATCGAAACAGATATATTTTGGGAAGGATCGTGCGGTTGCGCCGCCGAAGCAGATGACGGCGATGGAGAAAACGGCGGAATCGTATTTTCCGACTTCGCCTATGATGTATGCTGTGATTGAGAATCCTGCGTTTGTTGATAACCCGGATATACCGAGTTATCAACCTCATGTGCATGGAAGGTGTGATCCTCCTGCTTTGATTCCGTTACAGATGAACGGAGTTTCGATTGCGGCGGATTGTTATTTCGATACGGCGTTTATCACTGTTACGGGT</genome_strand>
        <mrna_strand>AGCATAAGATTTTATTGTATATGGCGATTTGTTTATTCGTTCAACTTTATTAACTTTTATGTAATAGTGTCCTCTAATTTTTTTTTTCTGAGTCAAAAATTTCAAACTCAAGTGAGAAATTTGTATGGCAGCCATTGCTAGCAAACTTGCTAACCGTGGCAAAAACGTGTTCACTTCCGATACTTTCTCCGGTAACAAAGTTTATATGATAACAATATCACACCATTAACGTCGGCCGGCGATCANAAAAGTTTGCTCCGAGAANAANAGGAANAAACGAAATCAACATTTCGGAAAATCCTCTTCTTCTCCATTATATATATATAAATATTTTTTTTGATTTTTTTTCTTTTATTATTGNACGGATTTACGTACAATTTTGATTTGACNNNGGCGGATCAGGAGGAATTTGTGAAATCGGTGGAANACGGGTTGAGGTTATCGAAACANATATATTTTGGGAAGGATCGTGCGGTTGCGCCGCCGANNCANATGACGGCGATGGANAAAACGGCGGAATCGTATTTTCCGACTTCGCCTATGATGTATGCTGTGATTGAGAATCCTGCGTTTGTTGATAACCCGGANATACCGAGTTATCAACCTCATGTGCANGGAAGGTGTGATCCTCCTGCTTTGATTCCGTTACAGATGAACGGAGTTTCGATTGNGGCGGATTGTTATTTCNATACGGCGTNNATCACTGTTACGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U573275" ref_strand="+" ref_description="SGN-U573275 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|18420285|ref|NP_568398.1| (e_value=1e-149) expressed protein [Arabidopsis thaliana]; (*ATH) AT5G20680.1 (e_value=9e-152) | Symbol: None | expressed protein, predicted proteins, Arabidopsis thaliana | chr5:6998105-7001912 FORWARD | Aliases: T1M15.80, T1M15_80; ">
      <seq>cgcacttatgctgggggttatacatagagacaattttacagcaaccccggggagacaagattgcaactttgctaaaggcagatgggtcatagatgatagccgacctttatattctggatttggctgtaagcaatggttgtcatctatgtgggcttgtcgcttgacacaacgtacagattttgaatatgaaaagttacgttggcgacccaaaaattgtgagatggaagattttactggtgttaaatttctgaaaaggatgcaaaacaaaactctggcgtttatcggggattcgcttggtagacagcaatttcagtcacttatgtgtatgattagtggtggaaaagatagacctaatgttcttgatgtggggcatgaatatggtctagtgcaatctcgtggttctggtcgacctgatggatgggcttttcgatttccagacaccaaaacaactattctttattattggtctgctagtctctgtgacttgacacctataaatccatctgatcctgctactgattacgccatgcacctggaccgtcctccagcatttttgagtcatttccttccaaggttcgatgtccttgttctaaacacaggacaccattggaatagaggaaagcttaaggccaatcgatgggtcatgtatgtaggtggtgtccctaatacaaaccggaagattgtgactataggtggtgccaagaatttcacaatccacagtattgtcaattgggtgaactcacagctgccaaaataccctcatgtaaaagcattctatcggactatatcccccagacatttctttaacggagattggaacacaggaggtacatgtgacaacactacaccactttccgaagggaaggaggttttacaagacgaatcaagtgactatgatgcagcacgtgctgttagaggaacagacgttaagcttttggacatcactgctttatcccagctgagagatgaaggtcatatatctcgatacagcatcaaagcaacaccaggtgtccaggattgtctacattggtgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="88647" stop="86437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88348" g_stop="88290" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.797"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88289" i_stop="88125" i_length="165">
            <donor d_prob="0.995" d_score="0.86"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88124" g_stop="87929" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="255" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87928" i_stop="87518" i_length="411">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87517" g_stop="86737" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="1036" r_length="781" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-U573275" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>1036</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88348" e_stop="88290"/>
          <exon e_start="88124" e_stop="87929"/>
          <exon e_start="87517" e_stop="86737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTGAGTTCTGGGGGTGA-ACATAGTGACAATTTTACAGCAACCCCGGAAAGACAAGGTGGCCTATCTTTCCTTTTTTATCCTTATTTATCTAATCACTGATTTGCTTTGTCATTTTCTCCGACCATGCAATCGTTGATATTGTTAAACTCAGAATTTGTCTACCAGTTCTTGAGATATCCCTTCTTTGGGTCTTCTATAATATGATAAGCCTTGTTTTCAGATTGCAACTTTGCTAAAGGCAGATGGGTCATAGATGATAGCCGACCTTTATATTCTGGATTTGGCTGTAAGCAATGGTTGTCATCTATGTGGGCTTGTCGCTTGACACAACGTACAGATTTTGAATATGAAAAGTTACGTTGGCGACCCAAAAATTGTGAGATGGAAGATTTTACTGGTGTTAAATTTCTGAAAAGGTAGCGTTATTTTTCTTATGAAGTCTTTATTTCTGATCCTTGAATTCAAGTTTGAGATGTGGTCTACAAAAGAAACAAAAAGTTCTTTATTAACTTTATGAAAACCTTTTCTTTATTTGTTTCTAGCACAACTCAAGTAGTGTCTACCTTCACTCCGTTGTTATTTATCCAAGGCTAATATGACGGCGTTTGGCTTAATCAAATTATTAAGATGTTAAACCTGAAATGTATAATCTGTTACTGTAGAGCTATTTTTCGTGGCTTGTGGCTTGTTGTCATGAAAAAGTATTCACAATTCCGGAAGGTTATTTCTTATTACTTAGCATTGCTATATCTCTTCCTTGAGGTGAAATTATTTGGATTTGATTATTCTACATGTAAGAGATTCACTAAATTTGATGGTGCATCCAGGATGCAAAACAAAACTCTGGCGTTTATCGGGGATTCGCTTGGTAGACAGCAATTTCAGTCACTTATGTGTATGATTAGTGGTGGAAAAGATAGACCTAATGTTCTTGATGTGGGGCATGAATATGGTCTAGTGCAATCTCGTGGTTCTGGTCGACCTGATGGATGGGCTTTTCGATTTCCAGACACCAAAACAACTATTCTTTATTATTGGTCTGCTAGTCTCTGTGACTTGACACCTATAAATCCATCTGATCCTGCTACTGATTACGCCATGCACCTGGACCGTCCTCCAGCATTTTTGAGTCATTTCCTTCCAAGGTTCGATGTCCTTGTTCTAAACACAGGACACCATTGGAATAGAGGAAAGCTTAAGGCCAATCGATGGGTCATGTATGTAGGTGGTGTCCCTAATACAAACCGGAAGATTGTGACTATAGGTGGTGCCAAGAATTTCACAATCCACAGTATTGTCAATTGGGTGAACTCACAGCTGCCAAAATACCCTCATGTAAAAGCATTCTATCGGACTATATCCCCCAGACATTTCTTTAACGGAGATTGGAACACAGGAGGTACATGTGACAACACTACACCACTTTCCGAAGGGAAGGAGGTTTTACAAGACGAATCAAGTGACTATGATGCAGCACGTGCTGTTAGAGGAACAGACGTTAAGCTTTTGGACATCACTGCTTTATCCCAGCTGAGAGATGAAGGTCATATATCTCGATACAGCATCAAAGCAACACCAGGTGTCCAGGATTGTCTACATTGGTGCTTA</genome_strand>
        <mrna_strand>CGCACTTA-TGCTGGGGGTTATACATAGAGACAATTTTACAGCAACCCCGGGGAGACAAG.....................................................................................................................................................................ATTGCAACTTTGCTAAAGGCAGATGGGTCATAGATGATAGCCGACCTTTATATTCTGGATTTGGCTGTAAGCAATGGTTGTCATCTATGTGGGCTTGTCGCTTGACACAACGTACAGATTTTGAATATGAAAAGTTACGTTGGCGACCCAAAAATTGTGAGATGGAAGATTTTACTGGTGTTAAATTTCTGAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAAAACAAAACTCTGGCGTTTATCGGGGATTCGCTTGGTAGACAGCAATTTCAGTCACTTATGTGTATGATTAGTGGTGGAAAAGATAGACCTAATGTTCTTGATGTGGGGCATGAATATGGTCTAGTGCAATCTCGTGGTTCTGGTCGACCTGATGGATGGGCTTTTCGATTTCCAGACACCAAAACAACTATTCTTTATTATTGGTCTGCTAGTCTCTGTGACTTGACACCTATAAATCCATCTGATCCTGCTACTGATTACGCCATGCACCTGGACCGTCCTCCAGCATTTTTGAGTCATTTCCTTCCAAGGTTCGATGTCCTTGTTCTAAACACAGGACACCATTGGAATAGAGGAAAGCTTAAGGCCAATCGATGGGTCATGTATGTAGGTGGTGTCCCTAATACAAACCGGAAGATTGTGACTATAGGTGGTGCCAAGAATTTCACAATCCACAGTATTGTCAATTGGGTGAACTCACAGCTGCCAAAATACCCTCATGTAAAAGCATTCTATCGGACTATATCCCCCAGACATTTCTTTAACGGAGATTGGAACACAGGAGGTACATGTGACAACACTACACCACTTTCCGAAGGGAAGGAGGTTTTACAAGACGAATCAAGTGACTATGATGCAGCACGTGCTGTTAGAGGAACAGACGTTAAGCTTTTGGACATCACTGCTTTATCCCAGCTGAGAGATGAAGGTCATATATCTCGATACAGCATCAAAGCAACACCAGGTGTCCAGGATTGTCTACATTGGTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U573274" ref_strand="+" ref_description="SGN-U573274 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|62733284|gb|AAX95401.1| (e_value=5e-14) Arabidopsis proteins of unknown function, putative [Oryza sativa (japonica cultivar-group)]; (*ATH) AT5G20680.1 (e_value=6e-15) | Symbol: None | expressed protein, predicted proteins, Arabidopsis thaliana | chr5:6998105-7001912 FORWARD | Aliases: T1M15.80, T1M15_80; ">
      <seq>gggggaattgattcttaacttcagatgtttttcaactcaaattcatcattcttacacaatttaatctattgattaccttcataaatcatttctacatcatcaatcctacgttttccaggttcaaattcatccaatttttagatgttactctgaagcaaaaataatgtccattgtggtggaatgagttcaagtccaaacatccctaagcttcaaggatgaagggaggtttgaaggtgtcacagatctctctcatcctgatcggattcgtgtgtgcttctgttcttcttttggcatatgtgaagagcctacttctttcttcttcagtactacctcagaatcatgtcttgcagctttctccagatcttagagtgaaagatgaagaagctttgggagaaggaagcggatcggagcaatcacaagacagtgttaactttgaatctgaaaaatatcctacttatgcaaactcttcaccggtgattaaggtgactgaagagttgattactcatgaagaaagaggaggtattgctccgaatatcactgaaaaaggagattcaaaagatgtttcagacaaaaaaactggtttaatacaccaggaaattgacgtttccactgctgtgagttctgggggtgaacataatgacaattttacagcaaccccccgaaagacaagattgcaactttgctaaaggcagatgggtcatagatgatagccganctttatattctggatttggctgtaagcaanggnngtcatctatgtgggcttgtcgcttgacacaacgtacagattttgannatgaaaagttacgttngnnacccaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="91486" stop="87672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91190" g_stop="91050" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91049" i_stop="89427" i_length="1623">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89426" g_stop="89208" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="360" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89207" i_stop="88837" i_length="371">
            <donor d_prob="0.171" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88836" g_stop="88678" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="519" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88677" i_stop="88440" i_length="238">
            <donor d_prob="0.793" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88439" g_stop="88290" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="670" r_length="151" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88289" i_stop="88125" i_length="165">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88124" g_stop="87971" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="824" r_length="154" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-U573274" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91190" e_stop="91050"/>
          <exon e_start="89426" e_stop="89208"/>
          <exon e_start="88836" e_stop="88678"/>
          <exon e_start="88439" e_stop="88290"/>
          <exon e_start="88124" e_stop="87971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGAATTGATTCTTAACTTCAGATGTTTTTCAACTCAAATTCATCATTCTTACACAATTTAATCTATTGATTACCTTCATAAATCATTTCTACATCATCAATCCTACGTTTTCCAGGTTCAAATTCATCCAATTTTTAGGTATGCATTTCGTGTATATAAATCAGATTCAATACAGCATTACTCTTTATCTTTTTGGTGTTTTGTGATATTGCTATATCTATATACTGGGATATTTTAGTATTGATTTGATTCAGATTGTTTTTGGTACCTTTAAATGTCTTAAAGATCCAATCTGTATAAAGATTTTGTGCGTTACTGAGTTGGGGTTACTGGTTTCTCTTGAGTTGAGGGTTTATCGGAAACAACAAATCTACTACAGGCAGTAGGGTTAAAGTGGTAAGGTCTGCATATACTCTACTCTTTTCGGACCTCACTTGTGAGACTATACTGGTATGTTGTTGTATGTATTTCTGCAGTGAATTATTGTTTTTTGTTTCTGATTTTGCTGGAATTGACATATTCCAGATACTGGGTATTTCAAGATTTTGTTTGATTTTAGTGTTACATTTTGTTGTTGCTACTTGTTCATTTCTTAATTGTTTTCAGCAGGGCTTCTTTGCTATTGTATTTGTTCGACATACTTATTTTTTGGATATGATTTAGTTGAGCTGAGTGTTTATTGGAAACCTCCTCTTTACCTGCATAAGGTAATGGTGAGGCTGCGTAGGAACCACCCATTCCTAGACTTCATAAAGCTACTATCTTTGGTTTTTACTAGTATTTATTAGATCCAATTGTTGTATATTTGTGCTCTGAATTTTGATTATGTAACTGGATTTTGTGGTAAATTAAATGTTTTGGGTACTGGGTTTTCAAATTTAAGCTCTTCATCCGTCTTGCGGCTGGTGCTTCTCTATATTTGATTATTATTATAATTCCTTCATGTTGGTAAAGCTGCTATCTTTGTATTGCAGTCTTAGTTGATGTGTGTGTTGGATACTCCAAAAGTAGTGCATTTTGGAGAATCCGATACGGGTGCGACAAGAATTTGGAGAGTCCCAGCAACATAGTTTGCAGTAGTATTAATGTTACTTTAATTATTAGGATTAGTTCGCCAGGTAGAAAATAATAGCGAGCAGGATGGATCTGCTTCAAAGATAAAATTTGGCCCAATCTTTAGTTGAAGGTGGCCAGAAAGAAGATGCAATGCATTTTTGTTATCAGTCCATGGTTTTGCTGGAAACTATCTATTATTGCAGGACATTACTGAACCGTGAACTCTTTAGAGTTGGAGTTGGACTGCGTACAGAAATATATTGATTGGGATAACGGGTGAAGGCAGGATGTTGTTTTTTCATAAGATAAAGTGGAGGAATGAAAAAGGGTCTGTTAATAGGGATGGACTTTAATTATTGGATGATTCTTTGTTGTGCTTGGACTCAATTGATTAAAATTGTATAATTTGATCAGCATCTTATGCTCTCACATCTAGAGAAGGAAGCTTATGGAAGACAGCTATTTTTGATAGAACAGGAGTACTATTTGATGCCGCTTCTTAAAGATGCCTACTTCCTGATTTGAGCGCTTGTAGTATTTTATAAAGTATTGTTGTCCATTATAATCTGTCGAATTTCTGCTTTCTATAAGTGTCTGGTTTGTGGTCCGTATCAAGATTTGTGCCTGTGAATCTTTGCACCTTTTTTGCACCAGAAATAGCACTCTTATTTTTTCCTCAATCATTTTACTTTCACTTATTGACAGATGTTACTCTGAAGCAAAAATAATGTCCATTGTGGTGGAATGAGTTCAAGTCCAAACATCCCTAAGCTTCAAGGATGAAGGGAGGTTTGAAGGTGTCACAGATCTCTCTCATCCTGATCGGATTCGTGTGTGCTTCTGTTCTTCTTTTGGCATATGTGAAGAGCCTACTTCTTTCTTCTTCAGTACTACCTCAGAATCATGTCTTGCAGCTTTCTCCAGGTTTGCATAAACCCTCTGACGTACCATTGCTGGATGATCACCTCTGTGAGTTCTGGGGGGTGAACATAGTGACAATTTTGGTTTGGCTGGATGATTACCTTTTGTCAAATGGTTTGGCTGGATGATTACCGCTGTGATCTTACTTTATGGTGGACATATTGCTGACTTTGTTGATCTAAGTGCATTTTGCTAAGCAGTAGTTTTTTGTTCTCAACTATTTATCTCCTTTGAGAATGGTCAAGTTCGTATATTTCTGCAACTAATTTTAAGTAATAAAGGCACTATCTGAATTAGGAGTTTAGGACTCAACTCCCTGGTGGAGATGTTGCAGGATCCTGTTGAGTTACTTATTATACGCTCTTCTCTTGCAGATCTTAGAGTGAAAGATGAAGAAGCTTTGGGAGAAGGAAGCGGATCGGAGCAATCACAAGACAGTGTTAACTTTGAATCTGAAAAATATCCTACTTATGCAAACTCTTCACCGGTGATTAAGGTGACTGAAGAGTTGATTACTCATGAAGAAAGAGGAGGTAGGTGTTGTTTCAGGGCATCATAATTTTCTCATCTCAAAGTATCTAAGCCTTGATGATTTAGAGGCATCATTTAACTCATGAAAATGGCATATTGCATTGTCATATATTACATTCACAGGGTCGTCTTGACGTGCTTAAGTGAATGTACTCTTTCATTTTATTCTGAGCTTCTACTAAAGTTAACCGACTCTACTCTCTACAATTTGATATTTAATAGTTTTTTTCGGCAATGCAGGTATTGCTCCGAATATCACTGAAAAAGGAGATTCAAAAGATGTTTCAGACAAAAAAACTGGTTTAATAGAGCAGGAAATTGACGTTTCCACTGCTGTGAGTTCTGGGGGTGAACATAGTGACAATTTTACAGCAA-CCCCGGAAAGACAAGGTGGCCTATCTTTCCTTTTTTATCCTTATTTATCTAATCACTGATTTGCTTTGTCATTTTCTCCGACCATGCAATCGTTGATATTGTTAAACTCAGAATTTGTCTACCAGTTCTTGAGATATCCCTTCTTTGGGTCTTCTATAATATGATAAGCCTTGTTTTCAGATTGCAACTTTGCTAAAGGCAGATGGGTCATAGATGATAGCCGACCTTTATATTCTGGATTTGGCTGTAAGCAATGGTTGTCATCTATGTGGGCTTGTCGCTTGACACAACGTACAGATTTTGAATATGAAAAGTTACGTTGGCGACCCAAAAA</genome_strand>
        <mrna_strand>GGGGGAATTGATTCTTAACTTCAGATGTTTTTCAACTCAAATTCATCATTCTTACACAATTTAATCTATTGATTACCTTCATAAATCATTTCTACATCATCAATCCTACGTTTTCCAGGTTCAAATTCATCCAATTTTTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTACTCTGAAGCAAAAATAATGTCCATTGTGGTGGAATGAGTTCAAGTCCAAACATCCCTAAGCTTCAAGGATGAAGGGAGGTTTGAAGGTGTCACAGATCTCTCTCATCCTGATCGGATTCGTGTGTGCTTCTGTTCTTCTTTTGGCATATGTGAAGAGCCTACTTCTTTCTTCTTCAGTACTACCTCAGAATCATGTCTTGCAGCTTTCTCCAG...................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGAGTGAAAGATGAAGAAGCTTTGGGAGAAGGAAGCGGATCGGAGCAATCACAAGACAGTGTTAACTTTGAATCTGAAAAATATCCTACTTATGCAAACTCTTCACCGGTGATTAAGGTGACTGAAGAGTTGATTACTCATGAAGAAAGAGGAG..............................................................................................................................................................................................................................................GTATTGCTCCGAATATCACTGAAAAAGGAGATTCAAAAGATGTTTCAGACAAAAAAACTGGTTTAATACACCAGGAAATTGACGTTTCCACTGCTGTGAGTTCTGGGGGTGAACATAATGACAATTTTACAGCAACCCCCCGAAAGACAAG.....................................................................................................................................................................ATTGCAACTTTGCTAAAGGCAGATGGGTCATAGATGATAGCCGANCTTTATATTCTGGATTTGGCTGTAAGCAANGGNNGTCATCTATGTGGGCTTGTCGCTTGACACAACGTACAGATTTTGANNATGAAAAGTTACGTTNGNNACCCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U596853" ref_strand="+" ref_description="SGN-U596853 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aacttcagatgtttttcaactcaaattcatcattcttacacaatttaatctattgattaccttcataaatcatttctacatcatcaatcctacgttttccaggttcaaattcatccaatttttagtcttagttgatgtgtgtgttggatactccaaaagtagtgcattttggagaatccgatacgggtgcgacaagaatttggagagtcccagcaacatagtttgcagtagtattaatgttactttaattattaggattagttcgccaggtagaaaataatagcgagcaggatggatctgcttcaaagataaaatttggcccaatctttagttgaaggtggccagaaagaagatgcaatgcatttttgttatcagtccatggttttgctggaaactatctattattgcaggacattactgaaccgtgaactctttagagttggagttggactgcgtacagaaatatattgattgggataacgggtgaaggcaggatgttgttttttcataagataaagtggaggaatgaaaaagggtctgttaatagggatggactttaattattggatgattctttgttgtgcttggactcaattgattaaaattgtataatttgatcagcatcttatgctctcacatctagagaaggaagcttatggaaganagctatttttgatagaacaggagtactatttgatgncgcttcttnnnatgcctacttcctgatttgagcgcttgnagtattttataaaatgttactctgaagcaaaaannatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="91474" stop="89267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91174" g_stop="91050" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91049" i_stop="90214" i_length="836">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90213" g_stop="89586" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="752" r_length="627" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89585" i_stop="89427" i_length="159">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.790" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89426" g_stop="89401" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="778" r_length="26" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-U596853" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91174" e_stop="91050"/>
          <exon e_start="90213" e_stop="89586"/>
          <exon e_start="89426" e_stop="89401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCAGATGTTTTTCAACTCAAATTCATCATTCTTACACAATTTAATCTATTGATTACCTTCATAAATCATTTCTACATCATCAATCCTACGTTTTCCAGGTTCAAATTCATCCAATTTTTAGGTATGCATTTCGTGTATATAAATCAGATTCAATACAGCATTACTCTTTATCTTTTTGGTGTTTTGTGATATTGCTATATCTATATACTGGGATATTTTAGTATTGATTTGATTCAGATTGTTTTTGGTACCTTTAAATGTCTTAAAGATCCAATCTGTATAAAGATTTTGTGCGTTACTGAGTTGGGGTTACTGGTTTCTCTTGAGTTGAGGGTTTATCGGAAACAACAAATCTACTACAGGCAGTAGGGTTAAAGTGGTAAGGTCTGCATATACTCTACTCTTTTCGGACCTCACTTGTGAGACTATACTGGTATGTTGTTGTATGTATTTCTGCAGTGAATTATTGTTTTTTGTTTCTGATTTTGCTGGAATTGACATATTCCAGATACTGGGTATTTCAAGATTTTGTTTGATTTTAGTGTTACATTTTGTTGTTGCTACTTGTTCATTTCTTAATTGTTTTCAGCAGGGCTTCTTTGCTATTGTATTTGTTCGACATACTTATTTTTTGGATATGATTTAGTTGAGCTGAGTGTTTATTGGAAACCTCCTCTTTACCTGCATAAGGTAATGGTGAGGCTGCGTAGGAACCACCCATTCCTAGACTTCATAAAGCTACTATCTTTGGTTTTTACTAGTATTTATTAGATCCAATTGTTGTATATTTGTGCTCTGAATTTTGATTATGTAACTGGATTTTGTGGTAAATTAAATGTTTTGGGTACTGGGTTTTCAAATTTAAGCTCTTCATCCGTCTTGCGGCTGGTGCTTCTCTATATTTGATTATTATTATAATTCCTTCATGTTGGTAAAGCTGCTATCTTTGTATTGCAGTCTTAGTTGATGTGTGTGTTGGATACTCCAAAAGTAGTGCATTTTGGAGAATCCGATACGGGTGCGACAAGAATTTGGAGAGTCCCAGCAACATAGTTTGCAGTAGTATTAATGTTACTTTAATTATTAGGATTAGTTCGCCAGGTAGAAAATAATAGCGAGCAGGATGGATCTGCTTCAAAGATAAAATTTGGCCCAATCTTTAGTTGAAGGTGGCCAGAAAGAAGATGCAATGCATTTTTGTTATCAGTCCATGGTTTTGCTGGAAACTATCTATTATTGCAGGACATTACTGAACCGTGAACTCTTTAGAGTTGGAGTTGGACTGCGTACAGAAATATATTGATTGGGATAACGGGTGAAGGCAGGATGTTGTTTTTTCATAAGATAAAGTGGAGGAATGAAAAAGGGTCTGTTAATAGGGATGGACTTTAATTATTGGATGATTCTTTGTTGTGCTTGGACTCAATTGATTAAAATTGTATAATTTGATCAGCATCTTATGCTCTCACATCTAGAGAAGGAAGCTTATGGAAGACAGCTATTTTTGATAGAACAGGAGTACTATTTGATGCCGCTTCTTAAAGATGCCTACTTCCTGATTTGAGCGCTTGTAGTATTTTATAAAGTATTGTTGTCCATTATAATCTGTCGAATTTCTGCTTTCTATAAGTGTCTGGTTTGTGGTCCGTATCAAGATTTGTGCCTGTGAATCTTTGCACCTTTTTTGCACCAGAAATAGCACTCTTATTTTTTCCTCAATCATTTTACTTTCACTTATTGACAGATGTTACTCTGAAGCAAAAATAATGT</genome_strand>
        <mrna_strand>AACTTCAGATGTTTTTCAACTCAAATTCATCATTCTTACACAATTTAATCTATTGATTACCTTCATAAATCATTTCTACATCATCAATCCTACGTTTTCCAGGTTCAAATTCATCCAATTTTTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTAGTTGATGTGTGTGTTGGATACTCCAAAAGTAGTGCATTTTGGAGAATCCGATACGGGTGCGACAAGAATTTGGAGAGTCCCAGCAACATAGTTTGCAGTAGTATTAATGTTACTTTAATTATTAGGATTAGTTCGCCAGGTAGAAAATAATAGCGAGCAGGATGGATCTGCTTCAAAGATAAAATTTGGCCCAATCTTTAGTTGAAGGTGGCCAGAAAGAAGATGCAATGCATTTTTGTTATCAGTCCATGGTTTTGCTGGAAACTATCTATTATTGCAGGACATTACTGAACCGTGAACTCTTTAGAGTTGGAGTTGGACTGCGTACAGAAATATATTGATTGGGATAACGGGTGAAGGCAGGATGTTGTTTTTTCATAAGATAAAGTGGAGGAATGAAAAAGGGTCTGTTAATAGGGATGGACTTTAATTATTGGATGATTCTTTGTTGTGCTTGGACTCAATTGATTAAAATTGTATAATTTGATCAGCATCTTATGCTCTCACATCTAGAGAAGGAAGCTTATGGAAGANAGCTATTTTTGATAGAACAGGAGTACTATTTGATGNCGCTTCTT-NNNATGCCTACTTCCTGATTTGAGCGCTTGNAGTATTTTATAAA...............................................................................................................................................................ATGTTACTCTGAAGCAAAAANNATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U565096" ref_strand="+" ref_description="SGN-U565096 Tomato 200607#2 [50 ESTs aligned] (*GB) gi|12229948|sp|Q9XG77|PSA6_TOBAC (e_value=4e-134) Proteasome subunit alpha type 6 (20S proteasome alpha subunit A) (20S proteasome subunit alpha-1); (*ATH) AT2G05840.1 (e_value=2e-127) | Symbol: None | 20S proteasome alpha subunit A2 (PAA2), identical to GB:AF043519 | chr2:2234107-2236286 FORWARD | Aliases: T6P5.4, T6P5_4; (*SWP) sp|Q9XG77|PSA6_TOBAC (e_value=3e-135) Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1; ">
      <seq>gaattggaaaaaaaccctaaatcagttcgacaaaaattttcagatcgaactgagaaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgttgtgagaaaagaagatcccgtctttagagtgttaactactgaggaaatcgacgagcacttaacagccatcagtgagcgtgactgattagccacatgatacacagtccgttttctgttagaaatgtatgttttgctatcaagacttgcaaaagagatcccatttgattgttagttgctatcaatccttctgcatatgctgataaatgagtttctatttgtcgaatgtaacatttcatgggatcttcttagtttcaacaaaacgtttgaatccttctatcattatctatctacgatcttttgtactttgattatcatactattttatcattgtttttgccccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93506" stop="98543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93803" g_stop="93956" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="249" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="331" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="428" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="487" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="570" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="666" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="726" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97893" g_stop="98243" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="1077" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-U565096" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1077</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93803" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
          <exon e_start="97893" e_stop="98243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTGAAAAAAACCCTAAATCAGTTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCTATCTACGATCTTTTGTACTTTGATTATCATACTATTTTATCATTGTTTTTGCCCCCTT</genome_strand>
        <mrna_strand>GAATTGGAAAAAAACCCTAAATCAGTTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCTATCTACGATCTTTTGTACTTTGATTATCATACTATTTTATCATTGTTTTTGCCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U596136" ref_strand="+" ref_description="SGN-U596136 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|12229948|sp|Q9XG77|PSA6_TOBAC (e_value=1e-66) Proteasome subunit alpha type 6 (20S proteasome alpha subunit A) (20S proteasome subunit alpha-1); (*ATH) AT2G05840.2 (e_value=3e-66)  Symbol: None | similar to 20S proteasome alpha subunit A1 (PAA1) (PRC1) [Arabidopsis thaliana] (TAIR:At5g35590.1); similar to proteasome IOTA subunit [Glycine max] (GB:AAC28135.1); contains InterPro domain Proteasome subunit, A-type (InterPro:IPR000... ; (*SWP) sp|Q9XG77|PSA6_TOBAC (e_value=6e-68) Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1; ">
      <seq>tcagatcgaactgagattatcaaaccgtagaatcgaatatggagcccaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgctactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcgggacagtcccaggtttacacccagcatgcctatatgaaacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93542" stop="96232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93842" g_stop="93956" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="210" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="292" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="389" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95932" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="439" r_length="50" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-U596136" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93842" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCC</genome_strand>
        <mrna_strand>TCAGATCGAACTGAGATTATCAAACCGTAGAATCGAATATGGAGCCCAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGCTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGGACAGTCCCAGGTTTACACCCAGCATGCCTATATGAAACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U565095" ref_strand="+" ref_description="SGN-U565095 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|12229948|sp|Q9XG77|PSA6_TOBAC (e_value=8e-46) Proteasome subunit alpha type 6 (20S proteasome alpha subunit A) (20S proteasome subunit alpha-1); (*ATH) AT2G05840.2 (e_value=1e-43)  Symbol: None | similar to 20S proteasome alpha subunit A1 (PAA1) (PRC1) [Arabidopsis thaliana] (TAIR:At5g35590.1); similar to proteasome IOTA subunit [Glycine max] (GB:AAC28135.1); contains InterPro domain Proteasome subunit, A-type (InterPro:IPR000... ; (*SWP) sp|Q9XG77|PSA6_TOBAC (e_value=4e-47) Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1; ">
      <seq>cagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgactttcgctttaaatatggttatgaaatgccagcatgctgtgtgtaaacctgggacttggccgcgatccatttagacagtacatgcctatatgagacctcttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaacgcgaccctgctagtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactgtttggagaagaaaatgaataataaccctgcgttctcctatgaggaaactgttcagaccactatctctgctcttcaatctgttctgcaagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="95112" stop="97827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95412" g_stop="95511" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="0.82"/>
            <acceptor a_prob="0.734" a_score="0.68"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="157" r_length="57" r_score="0.729"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="0.78"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="240" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="336" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.816" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97490" g_stop="97527" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="374" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-U565095" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95412" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCA-GATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGA</genome_strand>
        <mrna_strand>CAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGACTTTCGCTTTAAATATGGTTATGAAATGCCAGCATGCTGT-GTGTAAACCTG...................................................................................................................................................................................................................................................................................................................................................................................GGACTTGGCCGCGATCCA--TTTAGACAGTACATGCCTATATGAGACCTCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAACGCGACCCTGCTAGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTGTTTGGAGAAGAAAATGAATAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATCTCTGCTCTTCAATCTGTTCTGCAAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U563788" ref_strand="+" ref_description="SGN-U563788 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|82470793|gb|ABB77433.1| (e_value=4e-64) RBX1-like; (*ATH) AT5G20570.1 (e_value=2e-60) | Symbol: None | ring-box protein-related, similar to ring-box protein 1 GI:4769004 from (Homo sapiens) | chr5:6956662-6958313 REVERSE | Aliases: F7C8.160, F7C8_160; (*SWP) sp|Q940X7|RBX1A_ARATH (e_value=2e-59) RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A; ">
      <seq>ataattttgaaaaatctgtgaactcttcgaagcttaaaaattcaatggcgtcaccggataccgatgtgccgatggttcccgccggcgagagttcaaccggagctggaacgtctaacaaaaagccgaagcgatttgagatcaaaaagtggaacgccgtttctctctgggcttgggatattgtggtagataattgtgccatctgtaggaatcacatcatggatctgtgtatcgagtgtcaagctaatcaagctagcgcaacaagtgaggaatgcacagttgcttggggtgtttgcaaccatgcattccacttccattgcattagcaggtggctcaagactcgtcaagtgtgtccacttgataacagcgagtgggagtttcagaagtatggtcactagaatttactgttggtgtacagtgaatgagaggagcttcaaaactatggtcattacagtttttctgtcatcgacgttgaaaagaacaattctgctgccttatgttcctttcgtttttgctctgcaaatatccaaagcaatgactcgaactatgtttttaattgtcgcatgtctgttttaggttgcctcaaaagaatgaaatgtgtttggagactaaccatttcttattcgaatttacatattttctttgttcttcagtgttcattactatttgttgctctatttattttgtatcgtgttttttgctgtcctattttcgtttaattgtttttcnnntctacttttcntgtganccannnnctattgatancacctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="108819" stop="105084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108695" g_stop="108522" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108521" i_stop="107680" i_length="842">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107679" g_stop="107629" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="225" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107628" i_stop="107507" i_length="122">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107506" g_stop="107447" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="285" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107446" i_stop="105907" i_length="1540">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105906" g_stop="105835" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="357" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105834" i_stop="105752" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105751" g_stop="105336" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="770" r_length="413" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-U563788" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108695" e_stop="108522"/>
          <exon e_start="107679" e_stop="107629"/>
          <exon e_start="107506" e_stop="107447"/>
          <exon e_start="105906" e_stop="105835"/>
          <exon e_start="105751" e_stop="105336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTTTGAAAAATCTGTGAACTCTTCGAAGCTTAAAAATTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGGGTGAATTTCTAACCCTAATTAATTCCATCGTATTTTATATACGTATTTATTGATGTAGATTTAACGATTTTATGCTGGATTTAAAGTAATGGAATCCGGTGATCTATTTAGATTTTAAATCAGTGATTGCGAAGTACTATTGCTAGTTTTTGCTGATGATGTTGTGAACTTAGTGCAAGTGTACGTTTAGGAACTTTATAGTTCGAATGTATGTATGTACGTTTTTCAAGGCAAAGGTAGTGAATATTCCTACGCTCGCTGCTGAAAAATTGGATGTATGATGGATGATTGTATGGAATTTGATTTGTAAACAGCAGCACTATGTGTATTGGCTTACGTGAAATTAGTAGTGAATGTCAGTCCAAAAATATGAAGTTTGTGTAATGTACTAATGGTAATATTGTTTTGTTACCTGAGCTTGTAGTTGATATCCGTGAATCGGAATTAGAAAGGAATATTGACTGGAAGATGCTTACAGCAATTTGAAGTTATTTGTATCTTCTTTTAGGAGGTGGTTTGATCATAGATGTTGACGATTTATCATCTATCTTTTAAGTTTGATCGTGTTCAATGTACTGTTCTCTTTGTAGTACTTATTGTTACTTCTATAAATAAAAATTGTTACATCTTATGTTACTATTTATGGTTTACATTCAAATATATTATGATGTATGAGCAGTTCTGTACTTCCATGATTTTGTGTTGCACATAATATACAATTATTGTATTTGTTTTGTTTGGTGTGAATTTGATTTTCTTCAACATGCTCATTGTCCGAATTGCGTTGGAGTGATCTTTCTGATTCTTTTTATCAATCTTGTGAATTGTGATTTTGGTTGCAGATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGTGTGAGTTTTGGCTCTCCTTTCACTACTGTTCAATCAATGTTTCCTTTTCTTTGGTATGATATCATCATGAAATCTTTTATCCTCTTAATAGTTGATTTAAGTTGTATGCTAATTTTGATTAGGTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGGGTATGTAGCTCTTGTTATGTGTGAGAATATCGATTTAACATTTTAGTTTGTTAATTTGCGGTGAGTTCCAAATATTGTATGACTAGTATCTTATATCTCCTCCCACTGTATCTTGCCTTATGATCTATCAACCAACAGAATGACCCACAGACGCTCCTATGCATTGCAAATCCTCCTTATTAACCATGAAACTAAGTGAATAGGAAACTACCAATATCAGTATATTACTAAAGTAAGGATGAAGTAGGAAGTCATGTAGTTACTGGGGAAAAAACGAAGAAAGCTCCTTTTTTTTTCTGAGAAAGGAAAAAAAATATTTATGTTTCGTTTTGTTTTAGCAGTTTTTTTTTTGCCAGGAGTGTACTTTCTTTTGATGCTTAGAATAATAATGAAAATGTTCTGTTTCTTCTTTTGATCCTCAATACAAAACAAAAAACCTTTTTGTGGTCACGTTTTCGAGAAAACCCCTCTTTTCTTTTTTGAGAATATTGCTTTCCTCGGATTTTGTTATTGGGGATGGTCATGTTGAAGGTTGCTGAAGAAATAGATAACTTGGAGCCATTCCATTGTGTATGAAGTACCGTAGTACTGAGTTAGCACTTTTCTGGAGCATAGGATTACAAGCTTGAGAAATTGTTCTTTCCATTCTTGAAATGAGAGTGCTCTTTGTATGAGTACGGTGTTCTCGTGCTGTATTTTCTAATTTAAGTCAGTGATTATGTCTGTTTTAAATTGGTTTTACTCGTTAGTTATCACCATATGGTAGGAAAATAACCTCCCTCCTGCAATTTGGTCAAAATTGAAATTGTGGTAGCTTGAGATATGCAAGCCATGTGTTGATGGTATTGAACTTACATCATCTAGCTGGTCACCCACTCGTATGATTCCATGTTAACAACCATGTTAAACTTTTCCTTGAGTTTCGGCGACATACCAGATATAATTGTAGTAAAAAAACCAAAATATTAATTCTGCAATTAGATTATTGTGTTATAGTGAAGTCTGGTGGCTGGAATGTCTTCTATAATTGTGTTATAGTGTTGCTACTATTTGTAGAATAAGATGTTAATCAGTAGAGGTGCAAACTGATAAGGCATTAGTCACAAAAAGTTAGAGGATCTTCATGCCTCTCCTCAAGACTTTTGTTGTAGCTAGTGTTAAGTTTATATTGTGGTAAATGTTACATTGGATTTGCTCCAACTCTCGTGCACATGTCTTTCAATCTTTGACAATTGGTAATTGTCATTACTTGAGCTTGTTATTTGCCTTCTAAGCTGGTATCAGATTTGTGCCCATAAAATATTGTGGCATCCTTCCGCAAGAATTCTGGAAGATAACAAATAAGATACTCTTGACAAGGTACAGAGTGTCAAATAGTCCTCTGTGAAAAATCTACATTTTCTATTAACTGTATGAAATTAATGTTGGCGTAAACGTTACTCTACACTCACTAAACCTGTTTACGCCATTTTGGATATGGATTGCCATCTGTTATTCATCGGAAGGTCATTTTTTTTGCCATAACTGTTGATCATTGCAGGTGTTTGCAACCATGCATTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTGGTAAGTTGTATATATATTGCCGTCTCTGCATACATAAGCTGTCATTGTACATTACCTGCTAATTAAGTACAACACACTTTCAGATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCGAATTTACATATTTTCTTTGTTCTTCAGTGTTCATTACTATTTGTTGCTCTATTTATTTTGTATCGTGTTTTTTGCTGTCCTATTTTCGTTTAATTGTTTTTCAAATTCTACTTTTCTTGTGAGCCAAGGGTCTATTGATAACAACCTCTA</genome_strand>
        <mrna_strand>ATAATTTTGAAAAATCTGTGAACTCTTCGAAGCTTAAAAATTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGT..........................................................................................................................GTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGCAACCATGCATTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTG...................................................................................ATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCGAATTTACATATTTTCTTTGTTCTTCAGTGTTCATTACTATTTGTTGCTCTATTTATTTTGTATCGTGTTTTTTGCTGTCCTATTTTCGTTTAATTGTTTTTC-NNNTCTACTTTTCNTGTGANCC-ANNNNCTATTGATANC-ACCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U588056" ref_strand="+" ref_description="SGN-U588056 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|82470793|gb|ABB77433.1| (e_value=1e-39) RBX1-like; (*ATH) AT5G20570.1 (e_value=6e-36) | Symbol: None | ring-box protein-related, similar to ring-box protein 1 GI:4769004 from (Homo sapiens) | chr5:6956662-6958313 REVERSE | Aliases: F7C8.160, F7C8_160; (*SWP) sp|Q940X7|RBX1A_ARATH (e_value=5e-35) RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A; ">
      <seq>cgatatagttttgaaaaatctgtgaactcttcgaagcttaaccttcaatggcgtcaccggataccgatgtgccgatggttcccgccggcgagagttcaaccggagctggaacgtctaacaaaaagccgaagcgatttgagatcaaaaagtggaacgccgtttctctctgggcttgggatattgtggtagataattgtgccatctgtaggaatcacatcatggatctgtgtatcgagtgtcaagctaatcaagctagcgcaacaagtgaggaatgcacagttgcttggggtggctcaagactcgtcaagtgtgtccacttgataacagcgagtgggagtttcagaagtatggtcactagaatttactgttggtgtacagtgaatgagaggagcttcaaaactatggtcattacagtttttctgtcatcgacgttgaaaagaacaattctgctgccttatgttcctttcgtttttgctctgcaaatatccaaagcaatgactcgaactatgtttttaattgtcgcatgtctgttttaggttgcctcaaaagaatgaaatgtgtttggagactaaccatttcttattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="108819" stop="105186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108699" g_stop="108522" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108521" i_stop="107680" i_length="842">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107679" g_stop="107629" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="228" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107628" i_stop="107507" i_length="122">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107506" g_stop="107447" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="288" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107446" i_stop="105867" i_length="1580">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105866" g_stop="105835" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="320" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105834" i_stop="105752" i_length="83">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105751" g_stop="105486" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="586" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-U588056" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108699" e_stop="108522"/>
          <exon e_start="107679" e_stop="107629"/>
          <exon e_start="107506" e_stop="107447"/>
          <exon e_start="105866" e_stop="105835"/>
          <exon e_start="105751" e_stop="105486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATAATTTTGAAAAATCTGTGAACTCTTCGAAGCTTAAAAATTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGGGTGAATTTCTAACCCTAATTAATTCCATCGTATTTTATATACGTATTTATTGATGTAGATTTAACGATTTTATGCTGGATTTAAAGTAATGGAATCCGGTGATCTATTTAGATTTTAAATCAGTGATTGCGAAGTACTATTGCTAGTTTTTGCTGATGATGTTGTGAACTTAGTGCAAGTGTACGTTTAGGAACTTTATAGTTCGAATGTATGTATGTACGTTTTTCAAGGCAAAGGTAGTGAATATTCCTACGCTCGCTGCTGAAAAATTGGATGTATGATGGATGATTGTATGGAATTTGATTTGTAAACAGCAGCACTATGTGTATTGGCTTACGTGAAATTAGTAGTGAATGTCAGTCCAAAAATATGAAGTTTGTGTAATGTACTAATGGTAATATTGTTTTGTTACCTGAGCTTGTAGTTGATATCCGTGAATCGGAATTAGAAAGGAATATTGACTGGAAGATGCTTACAGCAATTTGAAGTTATTTGTATCTTCTTTTAGGAGGTGGTTTGATCATAGATGTTGACGATTTATCATCTATCTTTTAAGTTTGATCGTGTTCAATGTACTGTTCTCTTTGTAGTACTTATTGTTACTTCTATAAATAAAAATTGTTACATCTTATGTTACTATTTATGGTTTACATTCAAATATATTATGATGTATGAGCAGTTCTGTACTTCCATGATTTTGTGTTGCACATAATATACAATTATTGTATTTGTTTTGTTTGGTGTGAATTTGATTTTCTTCAACATGCTCATTGTCCGAATTGCGTTGGAGTGATCTTTCTGATTCTTTTTATCAATCTTGTGAATTGTGATTTTGGTTGCAGATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGTGTGAGTTTTGGCTCTCCTTTCACTACTGTTCAATCAATGTTTCCTTTTCTTTGGTATGATATCATCATGAAATCTTTTATCCTCTTAATAGTTGATTTAAGTTGTATGCTAATTTTGATTAGGTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGGGTATGTAGCTCTTGTTATGTGTGAGAATATCGATTTAACATTTTAGTTTGTTAATTTGCGGTGAGTTCCAAATATTGTATGACTAGTATCTTATATCTCCTCCCACTGTATCTTGCCTTATGATCTATCAACCAACAGAATGACCCACAGACGCTCCTATGCATTGCAAATCCTCCTTATTAACCATGAAACTAAGTGAATAGGAAACTACCAATATCAGTATATTACTAAAGTAAGGATGAAGTAGGAAGTCATGTAGTTACTGGGGAAAAAACGAAGAAAGCTCCTTTTTTTTTCTGAGAAAGGAAAAAAAATATTTATGTTTCGTTTTGTTTTAGCAGTTTTTTTTTTGCCAGGAGTGTACTTTCTTTTGATGCTTAGAATAATAATGAAAATGTTCTGTTTCTTCTTTTGATCCTCAATACAAAACAAAAAACCTTTTTGTGGTCACGTTTTCGAGAAAACCCCTCTTTTCTTTTTTGAGAATATTGCTTTCCTCGGATTTTGTTATTGGGGATGGTCATGTTGAAGGTTGCTGAAGAAATAGATAACTTGGAGCCATTCCATTGTGTATGAAGTACCGTAGTACTGAGTTAGCACTTTTCTGGAGCATAGGATTACAAGCTTGAGAAATTGTTCTTTCCATTCTTGAAATGAGAGTGCTCTTTGTATGAGTACGGTGTTCTCGTGCTGTATTTTCTAATTTAAGTCAGTGATTATGTCTGTTTTAAATTGGTTTTACTCGTTAGTTATCACCATATGGTAGGAAAATAACCTCCCTCCTGCAATTTGGTCAAAATTGAAATTGTGGTAGCTTGAGATATGCAAGCCATGTGTTGATGGTATTGAACTTACATCATCTAGCTGGTCACCCACTCGTATGATTCCATGTTAACAACCATGTTAAACTTTTCCTTGAGTTTCGGCGACATACCAGATATAATTGTAGTAAAAAAACCAAAATATTAATTCTGCAATTAGATTATTGTGTTATAGTGAAGTCTGGTGGCTGGAATGTCTTCTATAATTGTGTTATAGTGTTGCTACTATTTGTAGAATAAGATGTTAATCAGTAGAGGTGCAAACTGATAAGGCATTAGTCACAAAAAGTTAGAGGATCTTCATGCCTCTCCTCAAGACTTTTGTTGTAGCTAGTGTTAAGTTTATATTGTGGTAAATGTTACATTGGATTTGCTCCAACTCTCGTGCACATGTCTTTCAATCTTTGACAATTGGTAATTGTCATTACTTGAGCTTGTTATTTGCCTTCTAAGCTGGTATCAGATTTGTGCCCATAAAATATTGTGGCATCCTTCCGCAAGAATTCTGGAAGATAACAAATAAGATACTCTTGACAAGGTACAGAGTGTCAAATAGTCCTCTGTGAAAAATCTACATTTTCTATTAACTGTATGAAATTAATGTTGGCGTAAACGTTACTCTACACTCACTAAACCTGTTTACGCCATTTTGGATATGGATTGCCATCTGTTATTCATCGGAAGGTCATTTTTTTTGCCATAACTGTTGATCATTGCAGGTGTTTGCAACCATGCATTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTGGTAAGTTGTATATATATTGCCGTCTCTGCATACATAAGCTGTCATTGTACATTACCTGCTAATTAAGTACAACACACTTTCAGATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCG</genome_strand>
        <mrna_strand>CGATATAGTTTTGAAAAATCTGTGAACTCTTCGAAGCTT-AACCTTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGT..........................................................................................................................GTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAAGACTCGTCAAGTGTGTCCACTTG...................................................................................ATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>31</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4140" PGL_stop="4829"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4140" e_stop="4829"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="4140" e_stop="4829" e_length="690"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4140" stop="4829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564903" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTTTTCTTCCCCTTCTCCTCCTCATTCTCCATTTCTCTCACTTCACAAGTGGAAAAAACACAATAACTTCATATTCCACAAATCATCTTGTTTACACATCTTGCACCAAAGCAAGTTACCCTAAAATTTGCATTAGAACCCTCTCATCATACTCAACCATAAAAACACCAAAAGACTTAGCAAAAGCATCACTAAATGTGAGTATTTCAAGATCCAACAAAGCATCAAAATTCCTCAAAAATCTCAAAGTGAATAGCAAAAGAGAAAAAGGGGCACTTGTTGATTGTATAGAGCAAATAGGTGACTCTATACATGAGCTTAGAAAGTCACTTTTTGAGCTAAAACACTTGCATAAAGGGATTGGCTTTAGGTTCCAAATGAGTAATTTGGAGACTTGGATTAGTGCTTCTTTGACAAATGATGATACTTGTCTTGATGGTTTCAAAGAAATTGATGGAAAAGTTAGGTATGATGTGAAGAGAAGGATTTCTAATGTTGCAAAGGTTACAAGTAATGCTCTTTACCTCATCAATCTACTGGGCGGATTCAGAATCTGAAACTCACGCTAGTCTTAAAGCATATTTTTATCATATTCGAGTATTTTTAATAATAAATTTTATGTATATCTTTGTTTTTCGTGTTGAAAATATTGAATTCAGTTCATAAATTCTACTTGATCTGTCGATTCG</gDNA_template>
            <first_frame> R  F  L  P  L  L  L  L  I  L  H  F  S  H  F  T  S  G  K  N  T  I  T  S  Y  S  T  N  H  L  V  Y  T  S  C  T  K  A  S  Y  P  K  I  C  I  R  T  L  S  S  Y  S  T  I  K  T  P  K  D  L  A  K  A  S  L  N  V  S  I  S  R  S  N  K  A  S  K  F  L  K  N  L  K  V  N  S  K  R  E  K  G  A  L  V  D  C  I  E  Q  I  G  D  S  I  H  E  L  R  K  S  L  F  E  L  K  H  L  H  K  G  I  G  F  R  F  Q  M  S  N  L  E  T  W  I  S  A  S  L  T  N  D  D  T  C  L  D  G  F  K  E  I  D  G  K  V  R  Y  D  V  K  R  R  I  S  N  V  A  K  V  T  S  N  A  L  Y  L  I  N  L  L  G  G  F  R  I  *  N  S  R  *  S  *  S  I  F  L  S  Y  S  S  I  F  N  N  K  F  Y  V  Y  L  C  F  S  C  *  K  Y  *  I  Q  F  I  N  S  T  *  S  V  D  S </first_frame>
            <second_frame>  V  F  F  P  F  S  S  S  F  S  I  S  L  T  S  Q  V  E  K  T  Q  *  L  H  I  P  Q  I  I  L  F  T  H  L  A  P  K  Q  V  T  L  K  F  A  L  E  P  S  H  H  T  Q  P  *  K  H  Q  K  T  *  Q  K  H  H  *  M  *  V  F  Q  D  P  T  K  H  Q  N  S  S  K  I  S  K  *  I  A  K  E  K  K  G  H  L  L  I  V  *  S  K  *  V  T  L  Y  M  S  L  E  S  H  F  L  S  *  N  T  C  I  K  G  L  A  L  G  S  K  *  V  I  W  R  L  G  L  V  L  L  *  Q  M  M  I  L  V  L  M  V  S  K  K  L  M  E  K  L  G  M  M  *  R  E  G  F  L  M  L  Q  R  L  Q  V  M  L  F  T  S  S  I  Y  W  A  D  S  E  S  E  T  H  A  S  L  K  A  Y  F  Y  H  I  R  V  F  L  I  I  N  F  M  Y  I  F  V  F  R  V  E  N  I  E  F  S  S  *  I  L  L  D  L  S  I   </second_frame>
            <third_frame>   F  S  S  P  S  P  P  H  S  P  F  L  S  L  H  K  W  K  K  H  N  N  F  I  F  H  K  S  S  C  L  H  I  L  H  Q  S  K  L  P  *  N  L  H  *  N  P  L  I  I  L  N  H  K  N  T  K  R  L  S  K  S  I  T  K  C  E  Y  F  K  I  Q  Q  S  I  K  I  P  Q  K  S  Q  S  E  *  Q  K  R  K  R  G  T  C  *  L  Y  R  A  N  R  *  L  Y  T  *  A  *  K  V  T  F  *  A  K  T  L  A  *  R  D  W  L  *  V  P  N  E  *  F  G  D  L  D  *  C  F  F  D  K  *  *  Y  L  S  *  W  F  Q  R  N  *  W  K  S  *  V  *  C  E  E  K  D  F  *  C  C  K  G  Y  K  *  C  S  L  P  H  Q  S  T  G  R  I  Q  N  L  K  L  T  L  V  L  K  H  I  F  I  I  F  E  Y  F  *  *  *  I  L  C  I  S  L  F  F  V  L  K  I  L  N  S  V  H  K  F  Y  L  I  C  R  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4140" stop="4697"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFLPLLLLILHFSHFTSGKNTITSYSTNHLVYTSCTKASYPKICIRTLSSYSTIKTPKDLAKASLNVSISRSNKASKFLKNLKVNSKREKGALVDCIEQIGDSIHELRKSLFELKHLHKGIGFRFQMSNLETWISASLTNDDTCLDGFKEIDGKVRYDVKRRISNVAKVTSNALYLINLLGGFRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8671" PGL_stop="5902"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8671" e_stop="8651"/>
            <exon e_start="7998" e_stop="7844"/>
            <exon e_start="7751" e_stop="7671"/>
            <exon e_start="7346" e_stop="7287"/>
            <exon e_start="6811" e_stop="6667"/>
            <exon e_start="6208" e_stop="5902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.695" acc_prob="0.979" e_score="0.974"/>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="0.951"/>
          <exon-intron don_prob="0.985" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.969" e_score="0.986"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8671" e_stop="8651" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.980">
            <gDNA_intron_boundary i_start="8650" i_stop="7999" i_length="652"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="7998" e_stop="7844" e_length="155"/>
          </exon>
          <intron i_serial="2" don_prob="0.695" acc_prob="0.979">
            <gDNA_intron_boundary i_start="7843" i_stop="7752" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.951">
            <gDNA_exon_boundary e_start="7751" e_stop="7671" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="7670" i_stop="7347" i_length="324"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7346" e_stop="7287" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.982">
            <gDNA_intron_boundary i_start="7286" i_stop="6812" i_length="475"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="6811" e_stop="6667" e_length="145"/>
          </exon>
          <intron i_serial="5" don_prob="0.937" acc_prob="0.969">
            <gDNA_intron_boundary i_start="6666" i_stop="6209" i_length="458"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="6208" e_stop="5902" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8671" stop="8651"/>
              <exon start="7998" stop="7844"/>
              <exon start="7751" stop="7671"/>
              <exon start="7346" stop="7287"/>
              <exon start="6811" stop="6667"/>
              <exon start="6208" stop="5902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582703" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGACTGAGCCTCATCCTGAAG : GAGCTGGTGTTATCTTATGCATAGAGAAGGCATTAGCTCAGTCTGGTGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGGCACTTCCACACCGGCAGGGGATCTCAAAGAGTACCAAGCGATTGTACATTGTTTTGGCCAGAACCCAGAG : TTACGAGTGAACTCCACGAAGTCTATGATTGGTCACCTACTAGGAGCTGCTGGTGCTGTTGAAGCTGTAGCAATTATTCAG : GCAATACGAACTGGATGGGTTCATCCGAATATAAATCTTGATACCCCAGATGAGGGTGTG : GATACAAATGTACTTGTGGGTTCGAAAAAAGAAAGATTGGATATTAAGGTGGCGATATCGAATTCTTTTGGATTTGGTGGCCATAATTCATCGATATTATTTGCTCCCTACAAGTAAATATATTGTCCATCCCAACAAACCTAAG : GTAAATTGAAATAGGGTCCTTGATTTCGAGTTACATGGAGTCAAAATTGACGATGACTTCTCTAGTGGAAGAAGGTATTTGTAGTAACCGGTAGATAATTGTTGGAGCAAGCACGTGAAAGGGAAAATCGCGTAGGATTTTCCTTTTCGATCATGGCTACTATAGCATTCTTGGTTTCGATCATAATATATATAGATTGATCCGATATCTGATTCAAATCCAATATAGTTTTCAAAAATTATTGTATCAAAATTGTTGTTACTATAGAACATTTCTAATAATAGCATACTATTATTCTCTTCAAAAA</gDNA_template>
            <first_frame> *  L  S  L  I  L  K  :  E  L  V  L  S  Y  A  *  R  R  H  *  L  S  L  V  Y  P  R  K  M  *  T  T  L  M  R  M  A  L  P  H  R  Q  G  I  S  K  S  T  K  R  L  Y  I  V  L  A  R  T  Q  S :   Y  E  *  T  P  R  S  L  *  L  V  T  Y  *  E  L  L  V  L  L  K  L  *  Q  L  F  R :   Q  Y  E  L  D  G  F  I  R  I  *  I  L  I  P  Q  M  R  V  W :   I  Q  M  Y  L  W  V  R  K  K  K  D  W  I  L  R  W  R  Y  R  I  L  L  D  L  V  A  I  I  H  R  Y  Y  L  L  P  T  S  K  Y  I  V  H  P  N  K  P  K  :  V  N  *  N  R  V  L  D  F  E  L  H  G  V  K  I  D  D  D  F  S  S  G  R  R  Y  L  *  *  P  V  D  N  C  W  S  K  H  V  K  G  K  I  A  *  D  F  P  F  R  S  W  L  L  *  H  S  W  F  R  S  *  Y  I  *  I  D  P  I  S  D  S  N  P  I  *  F  S  K  I  I  V  S  K  L  L  L  L  *  N  I  S  N  N  S  I  L  L  F  S  S  K  </first_frame>
            <second_frame>  D  *  A  S  S  *  R :   S  W  C  Y  L  M  H  R  E  G  I  S  S  V  W  C  I  Q  G  R  C  E  L  H  *  C  A  W  H  F  H  T  G  R  G  S  Q  R  V  P  S  D  C  T  L  F  W  P  E  P  R   : V  T  S  E  L  H  E  V  Y  D  W  S  P  T  R  S  C  W  C  C  *  S  C  S  N  Y  S   : G  N  T  N  W  M  G  S  S  E  Y  K  S  *  Y  P  R  *  G  C   : G  Y  K  C  T  C  G  F  E  K  R  K  I  G  Y  *  G  G  D  I  E  F  F  W  I  W  W  P  *  F  I  D  I  I  C  S  L  Q  V  N  I  L  S  I  P  T  N  L  R :   *  I  E  I  G  S  L  I  S  S  Y  M  E  S  K  L  T  M  T  S  L  V  E  E  G  I  C  S  N  R  *  I  I  V  G  A  S  T  *  K  G  K  S  R  R  I  F  L  F  D  H  G  Y  Y  S  I  L  G  F  D  H  N  I  Y  R  L  I  R  Y  L  I  Q  I  Q  Y  S  F  Q  K  L  L  Y  Q  N  C  C  Y  Y  R  T  F  L  I  I  A  Y  Y  Y  S  L  Q  K </second_frame>
            <third_frame>   T  E  P  H  P  E   : G  A  G  V  I  L  C  I  E  K  A  L  A  Q  S  G  V  S  K  E  D  V  N  Y  I  N  A  H  G  T  S  T  P  A  G  D  L  K  E  Y  Q  A  I  V  H  C  F  G  Q  N  P  E  :  L  R  V  N  S  T  K  S  M  I  G  H  L  L  G  A  A  G  A  V  E  A  V  A  I  I  Q  :  A  I  R  T  G  W  V  H  P  N  I  N  L  D  T  P  D  E  G  V  :  D  T  N  V  L  V  G  S  K  K  E  R  L  D  I  K  V  A  I  S  N  S  F  G  F  G  G  H  N  S  S  I  L  F  A  P  Y  K  *  I  Y  C  P  S  Q  Q  T  *   : G  K  L  K  *  G  P  *  F  R  V  T  W  S  Q  N  *  R  *  L  L  *  W  K  K  V  F  V  V  T  G  R  *  L  L  E  Q  A  R  E  R  E  N  R  V  G  F  S  F  S  I  M  A  T  I  A  F  L  V  S  I  I  I  Y  I  D  *  S  D  I  *  F  K  S  N  I  V  F  K  N  Y  C  I  K  I  V  V  T  I  E  H  F  *  *  *  H  T  I  I  L  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8669" stop="8651"/>
                    <exon start="7998" stop="7844"/>
                    <exon start="7751" stop="7671"/>
                    <exon start="7346" stop="7287"/>
                    <exon start="6811" stop="6695"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEPHPEGAGVILCIEKALAQSGVSKEDVNYINAHGTSTPAGDLKEYQAIVHCFGQNPELRVNSTKSMIGHLLGAAGAVEAVAIIQAIRTGWVHPNINLDTPDEGVDTNVLVGSKKERLDIKVAISNSFGFGGHNSSILFAPYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12704" PGL_stop="10498"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12704" e_stop="12672"/>
            <exon e_start="10915" e_stop="10701"/>
            <exon e_start="10627" e_stop="10498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.970"/>
          <exon-intron don_prob="0.985" acc_prob="0.955" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="12704" e_stop="12672" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12671" i_stop="10916" i_length="1756"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="10915" e_stop="10701" e_length="215"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.955">
            <gDNA_intron_boundary i_start="10700" i_stop="10628" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10627" e_stop="10498" e_length="130"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12704" stop="12672"/>
              <exon start="10915" stop="10701"/>
              <exon start="10627" stop="10498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564581" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGTGGTACATATAGTGGCAGTGCAAGACAAG : GTGGCGTAAGGGCCACTGCGGTACCACCAGTGATTGAAGGTACATCTAAGAAGAAACCACCAACTAAGGAAAGGACTCAAAGGCGAGTGGTTGTTACAGGAATGGATGTGATCACACCAAATGGTCAGGATCCCGATGTGTTCTATGAAAACTTGCTTCAAGGTGTCAGTGGCATAAGTGAGATAGAATCTTTTGATTGTTCACAATTTCCAACA : AGAATTGCTGGAGAGATCAAGTCTTTCTCAAGTGATGGCTGGATTTCACCTAAACTTTCTAAACGAATGGACAAGTTCATGCTTTACGCTCTAACAGCTGGTAAGAAGGCATTGATAAATGGCGGAATTA</gDNA_template>
            <first_frame> E  V  V  H  I  V  A  V  Q  D  K  :  V  A  *  G  P  L  R  Y  H  Q  *  L  K  V  H  L  R  R  N  H  Q  L  R  K  G  L  K  G  E  W  L  L  Q  E  W  M  *  S  H  Q  M  V  R  I  P  M  C  S  M  K  T  C  F  K  V  S  V  A  *  V  R  *  N  L  L  I  V  H  N  F  Q  Q :   E  L  L  E  R  S  S  L  S  Q  V  M  A  G  F  H  L  N  F  L  N  E  W  T  S  S  C  F  T  L  *  Q  L  V  R  R  H  *  *  M  A  E  L </first_frame>
            <second_frame>  K  W  Y  I  *  W  Q  C  K  T  R :   W  R  K  G  H  C  G  T  T  S  D  *  R  Y  I  *  E  E  T  T  N  *  G  K  D  S  K  A  S  G  C  Y  R  N  G  C  D  H  T  K  W  S  G  S  R  C  V  L  *  K  L  A  S  R  C  Q  W  H  K  *  D  R  I  F  *  L  F  T  I  S  N   : K  N  C  W  R  D  Q  V  F  L  K  *  W  L  D  F  T  *  T  F  *  T  N  G  Q  V  H  A  L  R  S  N  S  W  *  E  G  I  D  K  W  R  N   </second_frame>
            <third_frame>   S  G  T  Y  S  G  S  A  R  Q   : G  G  V  R  A  T  A  V  P  P  V  I  E  G  T  S  K  K  K  P  P  T  K  E  R  T  Q  R  R  V  V  V  T  G  M  D  V  I  T  P  N  G  Q  D  P  D  V  F  Y  E  N  L  L  Q  G  V  S  G  I  S  E  I  E  S  F  D  C  S  Q  F  P  T  :  R  I  A  G  E  I  K  S  F  S  S  D  G  W  I  S  P  K  L  S  K  R  M  D  K  F  M  L  Y  A  L  T  A  G  K  K  A  L  I  N  G  G  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12702" stop="12672"/>
                    <exon start="10915" stop="10701"/>
                    <exon start="10627" stop="10499"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGTYSGSARQGGVRATAVPPVIEGTSKKKPPTKERTQRRVVVTGMDVITPNGQDPDVFYENLLQGVSGISEIESFDCSQFPTRIAGEIKSFSSDGWISPKLSKRMDKFMLYALTAGKKALINGGI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="22163" PGL_stop="18813"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22090" e_stop="21377"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="22090" e_stop="21377" e_length="714"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22090" stop="21377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22088" stop="21760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590977" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATC</gDNA_template>
            <first_frame> R  E  N  L  S  I  A  I  K  A  H  Q  F  C  Q  *  R  C  F  L  F  Y  H  L  I  Q  I  L  E  L  L  S  L  N  L  L  F  F  A  S  G  L  L  F  L  *  P  L  L  L  W  G  S  E  F  Y  G  S  Y  L  E  K  T  S  P  L  L  L  V  K  L  I  S  Q  *  *  R  C  N  L  Y  Y  H  C  *  N  S  *  I  F  V  F  Q  F  R  I  F  F  A  S  A  V  V  F  L  L  W  G  S  *  F  S  *  E  F  Y  G  S  Y  L  *  L  F  L  F  L  L  L  L  V  L  L  F  I  F  N  S  I  A  C  H  I  F  F  T  I  F  A  C  G  E  L  L  F  T  L  F  V  V  G  I  M  V  *  F  T  I  I  W  F  L  P  *  V  L  L  F  F  A  C  G  V  P  F  L  L  *  G  S  G  L  H  S  E  F  L  S  F  Y  L  W  L  Y  S  F  C  F  W  D  L  R  I  L  T  I  S  V  V  G  F  L  D  *  A  R  K  G  M  A  T  T  Q  L  T  A  S  S  I </first_frame>
            <second_frame>  E  K  T  S  P  L  L  L  R  L  I  N  F  A  N  K  G  A  S  F  F  I  I  *  F  K  F  L  N  F  C  L  *  I  Y  Y  F  L  L  L  V  C  C  S  C  D  H  F  C  C  G  V  Q  S  F  M  V  L  I  *  R  K  L  L  L  C  Y  *  *  N  *  S  P  N  N  K  G  A  I  F  I  I  I  V  E  I  L  E  F  L  S  S  N  L  G  Y  F  L  L  L  L  W  Y  F  C  C  G  V  L  D  L  V  E  N  F  M  V  L  I  C  N  C  S  S  F  C  F  C  W  C  Y  S  L  S  L  I  L  *  L  V  T  F  F  L  L  F  L  L  V  G  S  C  C  L  P  F  L  *  W  G  L  W  F  S  S  Q  L  Y  G  S  Y  L  E  F  Y  S  F  L  L  V  G  F  H  F  C  C  R  V  L  D  Y  I  Q  N  S  *  V  F  I  Y  G  C  T  L  F  A  S  G  I  *  G  Y  *  L  F  L  L  W  G  F  L  I  E  L  G  K  E  W  R  Q  L  S  *  P  R  H  P   </second_frame>
            <third_frame>   R  K  P  L  H  C  Y  *  G  S  S  I  L  P  I  K  V  L  P  F  L  S  F  D  S  N  S  *  T  F  V  F  K  F  T  I  F  C  F  W  F  A  V  L  V  T  T  F  V  V  G  F  R  V  L  W  F  L  S  R  E  N  F  S  F  V  I  S  E  T  N  L  P  I  I  K  V  Q  S  L  L  S  L  L  K  F  L  N  F  C  L  P  I  *  D  I  F  C  F  C  C  G  I  F  V  V  G  F  L  I  *  L  R  I  L  W  F  L  S  V  T  V  P  L  F  A  S  A  G  A  T  L  Y  L  *  F  Y  S  L  S  H  F  F  Y  Y  F  C  L  W  G  A  A  V  Y  P  F  C  S  G  D  Y  G  L  V  H  N  Y  M  V  L  T  L  S  F  T  L  F  C  L  W  G  S  I  S  V  V  G  F  W  I  T  F  R  I  L  E  F  L  S  M  V  V  L  F  L  L  L  G  F  E  D  I  D  Y  F  C  C  G  V  S  *  L  S  S  E  R  N  G  D  N  S  A  D  R  V  I  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21683" stop="21426"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYSLSHFFYYFCLWGAAVYPFCSGDYGLVHNYMVLTLSFTLFCLWGSISVVGFWITFRILEFLSMVVLFLLLGFEDIDYFCCGVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21876" stop="21676"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPNNKGAIFIIIVEILEFLSSNLGYFLLLLWYFCCGVLDLVENFMVLICNCSSFCFCWCYSLSLIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22004" stop="21807"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFVFKFTIFCFWFAVLVTTFVVGFRVLWFLSRENFSFVISETNLPIIKVQSLLSLLKFLNFCLPI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19774" e_stop="19140"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="19774" e_stop="19140" e_length="635"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19774" stop="19140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580372" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTT</gDNA_template>
            <first_frame> L  L  G  D  C  F  *  A  R  L  Q  R  R  N  L  H  L  A  R  *  *  Y  A  P  C  S  S  A  S  I  I  T  L  I  I  L  V  D  R  I  Y  L  L  S  M  L  L  R  I  F  E  N  V  N  E  C  L  L  N  P  L  R  I  V  Y  F  *  R  N  V  N  G  C  L  S  N  P  L  R  I  V  Y  Y  S  R  T  P  D  T  C  A  A  T  F  S  K  S  T  S  K  V  Y  I  Y  T  V  *  N  N  Q  F  Q  H  K  I  G  M  C  W  L  Y  V  I  I  A  T  L  H  K  M  *  N  K  T  T  R  I  Y  N  A  L  G  S  L  V  A  L  T  K  T  R  T  K  H  I  L  A  L  *  F  L  I  Q  L  S  C  E  P  N  D  L  *  Q  *  K  N  L  H  P  N  Q  H  V  V  L  F  *  V  T  C  *  S  K  T  L  V  Y  R  S  L  N  S  C  *  Y  R  S  P  F  P  W   </first_frame>
            <second_frame>  F  W  G  I  V  F  E  P  G  C  K  G  E  T  F  I  W  R  G  N  N  M  L  P  A  V  Q  L  V  L  L  L  S  L  Y  L  L  I  E  Y  T  C  Y  L  C  C  S  E  S  L  K  M  S  M  S  A  C  *  I  L  *  E  *  Y  T  F  R  G  M  S  T  D  A  C  R  T  L  *  E  *  Y  I  I  R  G  P  P  T  H  V  Q  Q  H  F  Q  K  V  L  A  R  Y  I  F  I  Q  F  E  I  T  N  S  N  I  K  L  A  C  V  G  F  M  *  *  *  L  H  Y  I  K  C  E  I  R  L  H  V  F  T  M  R  W  E  V  S  L  L  *  L  K  Q  E  R  N  I  F  L  H  Y  S  F  S  Y  N  Y  H  V  S  Q  M  T  C  D  S  E  R  I  Y  T  L  I  N  M  *  F  S  F  R  *  R  V  S  R  K  R  *  C  I  E  V  L  I  L  V  D  I  V  H  L  F  R  G  </second_frame>
            <third_frame>   S  G  G  L  F  L  S  Q  A  A  K  E  K  P  S  F  G  A  V  I  I  C  S  L  Q  F  S  *  Y  Y  Y  S  H  Y  T  C  *  *  N  I  L  V  I  Y  V  A  Q  N  L  *  K  C  Q  *  V  P  V  E  S  S  K  N  S  I  L  L  E  E  C  Q  R  M  L  V  E  P  S  K  N  S  I  L  F  E  D  P  R  H  M  C  S  N  I  F  K  K  Y  *  Q  G  I  Y  L  Y  S  L  K  *  P  I  P  T  *  N  W  H  V  L  A  L  C  N  N  S  Y  I  T  *  N  V  K  *  D  Y  T  Y  L  Q  C  A  G  K  S  R  C  S  N  *  N  K  N  E  T  Y  S  C  I  I  V  S  H  T  T  I  M  *  A  K  *  L  V  T  V  K  E  F  T  P  *  S  T  C  S  S  L  L  G  D  V  L  V  E  N  V  S  V  *  K  S  *  F  L  L  I  S  F  T  F  S  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0032P11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="22163" e_stop="22041"/>
            <exon e_start="21411" e_stop="21239"/>
            <exon e_start="20612" e_stop="20433"/>
            <exon e_start="20350" e_stop="20195"/>
            <exon e_start="19796" e_stop="19719"/>
            <exon e_start="19131" e_stop="18813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.824" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.905" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="22163" e_stop="22041" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21411" e_stop="21239" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20612" e_stop="20433" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.824" acc_prob="0.905">
            <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="20350" e_stop="20195" e_length="156"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19796" e_stop="19719" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.905">
            <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19131" e_stop="18813" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22163" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580587" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTATCCTTAACAGCTCTACACATTTTATCTACAATAGTCTAAAGTCTAAACACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG : GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG : TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG : AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG : GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG : GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGAATCCAGTCTGG</gDNA_template>
            <first_frame> C  Y  P  *  Q  L  Y  T  F  Y  L  Q  *  S  K  V  *  T  H  T  F  S  P  *  *  R  K  P  L  H  C  Y  *  G  S  S  I  L  P  I  K  :  E  W  R  Q  L  S  *  P  R  H  P  S  L  P  R  V  L  H  P  L  R  G  L  D  P  *  V  I  *  R  L  R  L  S  L  L  *  S  R  I  E  G  R  S  M  D  S  S  L  R  L  Q  Q  L  Y  P  P  S :   T  L  H  S  N  H  W  V  I  E  F  W  *  R  L  R  L  Q  R  R  R  V  *  A  A  S  C  F  Q  Y  Q  H  S  R  S  R  K  E  A  R  L  L  L  S  G  K  V  I  Q  L  A  R  L  R  W  R  L  V  *  R :   M  V  P  T  W  C  T  R  N  M  R  E  L  N  W  S  L  M  D  Q  S  T  *  F  *  K  R  M  T  L  L  A  Y  L  R  Q  M  I  S  R  I  C  S  P  *  M  T  E  F  *  S  R :   W  L  K  L  R  K  K  L  L  G  D  C  F  *  A  R  L  Q  R  R  N  L  H  L  A  R :   *  *  L  L  D  P  V  L  S  T  R  K  G  K  G  K  H  F  Q  Y  L  L  E  I  Q  F  C  I  P  N  M  L  A  M  T  S  K  E  L  M  V  L  N  T  S  H  *  G  H  L  M  *  L  L  C  F  S  K  C  F  V  I  Y  L  T  S  Q  F  I  L  I  P  V  F  C  S  V  V  *  K  R  G  D  C  C  N  H  F  G  I  K  L  L  Q  I  N  G  Q  F  L  V  Q  N  P  V  W </first_frame>
            <second_frame>  V  I  L  N  S  S  T  H  F  I  Y  N  S  L  K  S  K  H  T  P  S  V  H  S  R  E  N  L  S  I  A  I  K  A  H  Q  F  C  Q  *  R :   N  G  D  N  S  A  D  R  V  I  H  L  C  Q  G  F  C  I  L  *  G  A  *  I  H  K  *  F  K  G  C  V  F  R  S  F  K  A  E  *  K  V  V  P  W  T  R  R  *  G  F  N  S  C  I  P  Q   : V  H  F  T  Q  T  I  G  *  *  S  S  G  E  D  *  D  C  R  G  E  E  C  R  R  H  P  A  S  S  I  S  T  V  E  A  A  R  R  R  G  C  C  C  R  G  R  S  F  N  W  Q  D  Y  G  G  D  *  Y  K   : E  W  Y  P  R  G  V  L  E  I  C  G  N  *  T  G  V  *  W  I  K  A  P  D  F  E  R  G  *  H  C  W  H  T  *  D  R  *  Y  Q  G  S  A  A  L  E  *  Q  S  S  N  Q   : G  G  *  S  *  G  K  N  F  W  G  I  V  F  E  P  G  C  K  G  E  T  F  I  W  R   : G  D  S  C  W  T  R  S  S  R  R  G  R  E  K  E  S  T  F  S  I  S  W  K  Y  S  F  V  F  Q  I  C  W  Q  *  L  Q  R  S  *  W  F  *  I  H  H  I  E  G  I  *  C  N  C  C  A  S  V  N  V  L  L  F  I  *  Q  V  S  S  F  S  Y  Q  Y  F  A  V  *  Y  R  K  E  E  I  V  V  T  I  L  E  *  N  F  C  K  L  M  V  N  F  *  C  R  I  Q  S   </second_frame>
            <third_frame>   L  S  L  T  A  L  H  I  L  S  T  I  V  *  S  L  N  T  H  L  Q  S  I  V  E  K  T  S  P  L  L  L  R  L  I  N  F  A  N  K   : G  M  A  T  T  Q  L  T  A  S  S  I  S  A  K  G  F  A  S  F  E  G  L  R  S  I  S  N  L  K  V  A  S  F  A  P  L  K  Q  N  R  R  S  F  H  G  L  V  V  K  A  S  T  V  V  S  P  K  :  Y  T  S  L  K  P  L  G  D  R  V  L  V  K  I  K  T  A  E  E  K  S  V  G  G  I  L  L  P  V  S  A  Q  S  K  P  Q  G  G  E  V  V  A  V  G  E  G  H  S  I  G  K  T  T  V  E  I  S  I  K  :  N  G  T  H  V  V  Y  S  K  Y  A  G  T  E  L  E  F  D  G  S  K  H  L  I  L  K  E  D  D  I  V  G  I  L  E  T  D  D  I  K  D  L  Q  P  L  N  D  R  V  L  I  K  :  V  A  E  V  E  E  K  T  S  G  G  L  F  L  S  Q  A  A  K  E  K  P  S  F  G  A  :  V  I  A  V  G  P  G  P  L  D  E  E  G  K  R  K  A  L  S  V  S  P  G  N  T  V  L  Y  S  K  Y  A  G  N  D  F  K  G  A  D  G  S  E  Y  I  T  L  R  A  S  D  V  I  A  V  L  Q  *  M  F  C  Y  L  F  N  K  S  V  H  S  H  T  S  I  L  Q  C  S  I  E  K  R  R  L  L  *  P  F  W  N  K  T  F  A  N  *  W  S  I  S  S  A  E  S  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22119" stop="22041"/>
                    <exon start="21411" stop="21239"/>
                    <exon start="20612" stop="20433"/>
                    <exon start="20350" stop="20195"/>
                    <exon start="19796" stop="19719"/>
                    <exon start="19131" stop="18958"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLNTHLQSIVEKTSPLLLRLINFANKGMATTQLTASSISAKGFASFEGLRSISNLKVASFAPLKQNRRSFHGLVVKASTVVSPKYTSLKPLGDRVLVKIKTAEEKSVGGILLPVSAQSKPQGGEVVAVGEGHSIGKTTVEISIKNGTHVVYSKYAGTELEFDGSKHLILKEDDIVGILETDDIKDLQPLNDRVLIKVAEVEEKTSGGLFLSQAAKEKPSFGAVIAVGPGPLDEEGKRKALSVSPGNTVLYSKYAGNDFKGADGSEYITLRASDVIAVLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="30452" PGL_stop="31487"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30452" e_stop="31487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="30452" e_stop="31487" e_length="1036"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30452" stop="31235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31171" stop="31487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578541" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAGATTCATCAATTTAACTTCAATTTCACAAAAGAAAATTTAAAATTTGATTAAAAATGGTGAAACCCAATTCGAAAGATACTGAATTTTCACAGTCGTCATCGTCGTCGTTGTATCGGGGAGTACGGAAGAGGAAATGGGGGAAATGGGTATCGGAAATTAGATTACCTAATAGTAGAGAAAGGATTTGGTTGGGTTCTTATGATACGCCGGAAAAAGCTGCTAAAGCATTTGACGCCGCACTTTTTTGTTTGCGGGGTAAAGGGGCTAATTTCAATTTCCCGGAAAATCCGCCGGAGATTAGGAACGGAAGGACGATGACTCCGTCGGAGATTCAATCGGCGGCGGCGCAGTTTGCGAATAATACAGAACCCGAACTTATCCGGGTCGGGCCAAGGGAGAATTCGGATCTTTCTTCTTCCTCATCGGAAATATTTCGAGCGGAATCACCGTCGGTGTCAGTTTCCGATAGAGTAGAAAGTGAAAAGACGGAAATAACCTTGGGTAACGATTTTATCGATGTGTATCGGGTGGAGTCTAGAGTGGAAAGTGAAAAGACGGAAATGTCCTTGGATAACGGATTTGTTGACATGTTTTCGTCGTTAGGAACGGTTAATGATATGTCTGATTTTGGAATTTTTCCGGGGTTCGATGACTTATCGGGTGAATTTTTTATACCACCACCATCGTCACCACAACCATCACCACTGCAAATGCCTAATTTGGAATCATTAGAAGAAGAGAATTATTTGAACTATGATGGATTTCAATCACAGGGGACTTCATTTCTTTGGAATTTTTGAAGGATATAAAAATGTTACATTATATTCATTAATGGTTAATAATATAAGTTTATAAAATTAGAAATAGTACTAAAAATTAGTATTAAGTAGGATTAAGAGAACTTATTTGAATTTTAAAACTTCATTTGATGATTTTGTAGACAATTCTAGACATTTTTTTTGGTTGCTAGAATTGTTACAACATATGTGATTTGTACACATAATAAAGAGAATGTATTTTTTGACTAATCG</gDNA_template>
            <first_frame> S  R  F  I  N  L  T  S  I  S  Q  K  K  I  *  N  L  I  K  N  G  E  T  Q  F  E  R  Y  *  I  F  T  V  V  I  V  V  V  V  S  G  S  T  E  E  E  M  G  E  M  G  I  G  N  *  I  T  *  *  *  R  K  D  L  V  G  F  L  *  Y  A  G  K  S  C  *  S  I  *  R  R  T  F  L  F  A  G  *  R  G  *  F  Q  F  P  G  K  S  A  G  D  *  E  R  K  D  D  D  S  V  G  D  S  I  G  G  G  A  V  C  E  *  Y  R  T  R  T  Y  P  G  R  A  K  G  E  F  G  S  F  F  F  L  I  G  N  I  S  S  G  I  T  V  G  V  S  F  R  *  S  R  K  *  K  D  G  N  N  L  G  *  R  F  Y  R  C  V  S  G  G  V  *  S  G  K  *  K  D  G  N  V  L  G  *  R  I  C  *  H  V  F  V  V  R  N  G  *  *  Y  V  *  F  W  N  F  S  G  V  R  *  L  I  G  *  I  F  Y  T  T  T  I  V  T  T  T  I  T  T  A  N  A  *  F  G  I  I  R  R  R  E  L  F  E  L  *  W  I  S  I  T  G  D  F  I  S  L  E  F  L  K  D  I  K  M  L  H  Y  I  H  *  W  L  I  I  *  V  Y  K  I  R  N  S  T  K  N  *  Y  *  V  G  L  R  E  L  I  *  I  L  K  L  H  L  M  I  L  *  T  I  L  D  I  F  F  G  C  *  N  C  Y  N  I  C  D  L  Y  T  *  *  R  E  C  I  F  *  L  I  </first_frame>
            <second_frame>  Q  D  S  S  I  *  L  Q  F  H  K  R  K  F  K  I  *  L  K  M  V  K  P  N  S  K  D  T  E  F  S  Q  S  S  S  S  S  L  Y  R  G  V  R  K  R  K  W  G  K  W  V  S  E  I  R  L  P  N  S  R  E  R  I  W  L  G  S  Y  D  T  P  E  K  A  A  K  A  F  D  A  A  L  F  C  L  R  G  K  G  A  N  F  N  F  P  E  N  P  P  E  I  R  N  G  R  T  M  T  P  S  E  I  Q  S  A  A  A  Q  F  A  N  N  T  E  P  E  L  I  R  V  G  P  R  E  N  S  D  L  S  S  S  S  S  E  I  F  R  A  E  S  P  S  V  S  V  S  D  R  V  E  S  E  K  T  E  I  T  L  G  N  D  F  I  D  V  Y  R  V  E  S  R  V  E  S  E  K  T  E  M  S  L  D  N  G  F  V  D  M  F  S  S  L  G  T  V  N  D  M  S  D  F  G  I  F  P  G  F  D  D  L  S  G  E  F  F  I  P  P  P  S  S  P  Q  P  S  P  L  Q  M  P  N  L  E  S  L  E  E  E  N  Y  L  N  Y  D  G  F  Q  S  Q  G  T  S  F  L  W  N  F  *  R  I  *  K  C  Y  I  I  F  I  N  G  *  *  Y  K  F  I  K  L  E  I  V  L  K  I  S  I  K  *  D  *  E  N  L  F  E  F  *  N  F  I  *  *  F  C  R  Q  F  *  T  F  F  L  V  A  R  I  V  T  T  Y  V  I  C  T  H  N  K  E  N  V  F  F  D  *  S </second_frame>
            <third_frame>   K  I  H  Q  F  N  F  N  F  T  K  E  N  L  K  F  D  *  K  W  *  N  P  I  R  K  I  L  N  F  H  S  R  H  R  R  R  C  I  G  E  Y  G  R  G  N  G  G  N  G  Y  R  K  L  D  Y  L  I  V  E  K  G  F  G  W  V  L  M  I  R  R  K  K  L  L  K  H  L  T  P  H  F  F  V  C  G  V  K  G  L  I  S  I  S  R  K  I  R  R  R  L  G  T  E  G  R  *  L  R  R  R  F  N  R  R  R  R  S  L  R  I  I  Q  N  P  N  L  S  G  S  G  Q  G  R  I  R  I  F  L  L  P  H  R  K  Y  F  E  R  N  H  R  R  C  Q  F  P  I  E  *  K  V  K  R  R  K  *  P  W  V  T  I  L  S  M  C  I  G  W  S  L  E  W  K  V  K  R  R  K  C  P  W  I  T  D  L  L  T  C  F  R  R  *  E  R  L  M  I  C  L  I  L  E  F  F  R  G  S  M  T  Y  R  V  N  F  L  Y  H  H  H  R  H  H  N  H  H  H  C  K  C  L  I  W  N  H  *  K  K  R  I  I  *  T  M  M  D  F  N  H  R  G  L  H  F  F  G  I  F  E  G  Y  K  N  V  T  L  Y  S  L  M  V  N  N  I  S  L  *  N  *  K  *  Y  *  K  L  V  L  S  R  I  K  R  T  Y  L  N  F  K  T  S  F  D  D  F  V  D  N  S  R  H  F  F  W  L  L  E  L  L  Q  H  M  *  F  V  H  I  I  K  R  M  Y  F  L  T  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30504" stop="31256"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKMVKPNSKDTEFSQSSSSSLYRGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAAKAFDAALFCLRGKGANFNFPENPPEIRNGRTMTPSEIQSAAAQFANNTEPELIRVGPRENSDLSSSSSEIFRAESPSVSVSDRVESEKTEITLGNDFIDVYRVESRVESEKTEMSLDNGFVDMFSSLGTVNDMSDFGIFPGFDDLSGEFFIPPPSSPQPSPLQMPNLESLEEENYLNYDGFQSQGTSFLWNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="34851" PGL_stop="41000"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34851" e_stop="34972"/>
            <exon e_start="36524" e_stop="36585"/>
            <exon e_start="37350" e_stop="37452"/>
            <exon e_start="38133" e_stop="38209"/>
            <exon e_start="38284" e_stop="38345"/>
            <exon e_start="38433" e_stop="38520"/>
            <exon e_start="38625" e_stop="38700"/>
            <exon e_start="38809" e_stop="38839"/>
            <exon e_start="39564" e_stop="39683"/>
            <exon e_start="40050" e_stop="40135"/>
            <exon e_start="40244" e_stop="40417"/>
            <exon e_start="40507" e_stop="41000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="0.975"/>
          <exon-intron don_prob="0.912" acc_prob="0.996" e_score="0.984"/>
          <exon-intron don_prob="0.996" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="34851" e_stop="34972" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="34973" i_stop="36523" i_length="1551"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="36524" e_stop="36585" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.912" acc_prob="0.996">
            <gDNA_intron_boundary i_start="36586" i_stop="37349" i_length="764"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37350" e_stop="37452" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.927">
            <gDNA_intron_boundary i_start="37453" i_stop="38132" i_length="680"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38133" e_stop="38209" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="38210" i_stop="38283" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38284" e_stop="38345" e_length="62"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38346" i_stop="38432" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38433" e_stop="38520" e_length="88"/>
          </exon>
          <intron i_serial="6" don_prob="0.875" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38521" i_stop="38624" i_length="104"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38625" e_stop="38700" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38701" i_stop="38808" i_length="108"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="38809" e_stop="38839" e_length="31"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38840" i_stop="39563" i_length="724"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="39564" e_stop="39683" e_length="120"/>
          </exon>
          <intron i_serial="9" don_prob="0.849" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39684" i_stop="40049" i_length="366"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="40050" e_stop="40135" e_length="86"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.911">
            <gDNA_intron_boundary i_start="40136" i_stop="40243" i_length="108"/>
          </intron>
          <exon e_serial="11" e_score="0.994">
            <gDNA_exon_boundary e_start="40244" e_stop="40417" e_length="174"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="40418" i_stop="40506" i_length="89"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="40507" e_stop="41000" e_length="494"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34851" stop="34972"/>
              <exon start="36524" stop="36585"/>
              <exon start="37350" stop="37452"/>
              <exon start="38133" stop="38209"/>
              <exon start="38284" stop="38345"/>
              <exon start="38433" stop="38520"/>
              <exon start="38625" stop="38700"/>
              <exon start="38809" stop="38839"/>
              <exon start="39564" stop="39683"/>
              <exon start="40050" stop="40135"/>
              <exon start="40244" stop="40417"/>
              <exon start="40507" stop="41000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571879" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTTAAAGTTTGCATTTTTTTTTTTTTTGGTTGAAGATGATGCAACAGCAAAGGCTGAAACAACAGCAAGGATTGATGCAACAATCCCTTTATCATCCTGGTCTCATAGCATCCCCTCAG : ATAGAGCCCATCTTGAGTGGAAATCTGCCTCCTGGATTTGATTCAACTACTTGCAGGAGTGT : GTATGTTGGAAACATCAGTTCTCAAGTCACGGAACAACTTCTTCAAGAGGTTTTCTCAAGTACCGGTCCCCTTGAGGGTTGTAAGCTTATAAGGAAGGACAAG : TCGTCCTATGGGTTTGTGGATTATTTTGATCGCCAATCAGCTGCGCTTGCTATTGTGAGCCTCAATGGAAGGCAATT : GTTTGGACAGTGTATAAAAGTTAACTGGGCTTATGCCAGTGCTAAAAGAGAGGACACATCAA : ATCATTTTAGCATATTTGTTGGTGATCTTAGTCCGGAGGTTACAGATTCCACACTGTTTGCGTGCTTTTCAGTATACCCTAGCTGCTC : AGATGCAAGAGTGATGTGGGATCAGAAAATAGGCCGGTCTAGAGGGTTTGGGTTTGTTTCCTTTCGTGATCAGCAG : GAAGCCCAAAGTGCAATAGATGACTTGAATG : GAAAGTGGCTTGGAAGCCGACAAATCCGCTGCAACTGGGCAGCAAAAGGTGCTGGAGCCAGTAATGACAACCGGAGTTCAGATGCTAAAAGTGCTGTTGAGTTGACAACTGGAACATCAG : ATGATGGTCAACTGAAGGCCAACGAAGACGCTCCAGAAAATAATCCGCAGTACACAACTGTATATGTTGGCAACCTTGCTCCTGAT : GTCACTACCATTGACCTCCATCGTTATTTTCATGCTCTTGGGGCTGGTGTTATTGCTGATGTCCGTATTCAGCGAGACAGAGGATTTGGCTTTGTACGATACAGCAATCATGCTGAAGCAGCTCGAGCAATTCAATTAGGAAATGCTCGAATCCTCTTTGGTAAACCTATTAAG : TGCTCATGGGGAAGCAAGCCAACTCCACCAGGAAGCAGCACGAACCCTCTACCACCTCCTGTTATCAGACAACTCCCTGGTATTTCAGCCATGGGTCTTGCGATGTACGAGAGGCAGGTTGCTTTGGCTAGGATGACTGGTATGCAGACTCTCATGCAACACCAGGGACAGCGAATTGGCGTTGCTAGTCAGGTTCTGTATGATGGTGGCATTGCTTCCCCGCAGCCACCGGTATACTACTAGTTGTTGATTCAATAAAAACTTGTAAACACCTGTTGTTGTTAGTTCTCTGTGCTATTTTAAGTGATAGAATCCTCCTCTCTTTTTTTTTATCTATTGTTAGTTTTCTTTAGCTTCCTTTAATACCATCAGACAGAATGTATTGGATATGTAGTCTGTATTCTGTTTGAGAATGAAAGTTATAATATCTCTTTGGAAATACAATCACTTCATTGGATTATCAGTTTCTTTTTTTCAAAAAAATTATTCTTTTT</gDNA_template>
            <first_frame> Q  F  K  V  C  I  F  F  F  F  G  *  R  *  C  N  S  K  G  *  N  N  S  K  D  *  C  N  N  P  F  I  I  L  V  S  *  H  P  L  R :   *  S  P  S  *  V  E  I  C  L  L  D  L  I  Q  L  L  A  G  V   : C  M  L  E  T  S  V  L  K  S  R  N  N  F  F  K  R  F  S  Q  V  P  V  P  L  R  V  V  S  L  *  G  R  T  S :   R  P  M  G  L  W  I  I  L  I  A  N  Q  L  R  L  L  L  *  A  S  M  E  G  N   : C  L  D  S  V  *  K  L  T  G  L  M  P  V  L  K  E  R  T  H  Q  :  I  I  L  A  Y  L  L  V  I  L  V  R  R  L  Q  I  P  H  C  L  R  A  F  Q  Y  T  L  A  A   : Q  M  Q  E  *  C  G  I  R  K  *  A  G  L  E  G  L  G  L  F  P  F  V  I  S  R :   K  P  K  V  Q  *  M  T  *  M  :  E  S  G  L  E  A  D  K  S  A  A  T  G  Q  Q  K  V  L  E  P  V  M  T  T  G  V  Q  M  L  K  V  L  L  S  *  Q  L  E  H  Q  :  M  M  V  N  *  R  P  T  K  T  L  Q  K  I  I  R  S  T  Q  L  Y  M  L  A  T  L  L  L  M :   S  L  P  L  T  S  I  V  I  F  M  L  L  G  L  V  L  L  L  M  S  V  F  S  E  T  E  D  L  A  L  Y  D  T  A  I  M  L  K  Q  L  E  Q  F  N  *  E  M  L  E  S  S  L  V  N  L  L  S :   A  H  G  E  A  S  Q  L  H  Q  E  A  A  R  T  L  Y  H  L  L  L  S  D  N  S  L  V  F  Q  P  W  V  L  R  C  T  R  G  R  L  L  W  L  G  *  L  V  C  R  L  S  C  N  T  R  D  S  E  L  A  L  L  V  R  F  C  M  M  V  A  L  L  P  R  S  H  R  Y  T  T  S  C  *  F  N  K  N  L  *  T  P  V  V  V  S  S  L  C  Y  F  K  *  *  N  P  P  L  F  F  F  I  Y  C  *  F  S  L  A  S  F  N  T  I  R  Q  N  V  L  D  M  *  S  V  F  C  L  R  M  K  V  I  I  S  L  W  K  Y  N  H  F  I  G  L  S  V  S  F  F  Q  K  N  Y  S  F  </first_frame>
            <second_frame>  N  L  K  F  A  F  F  F  F  L  V  E  D  D  A  T  A  K  A  E  T  T  A  R  I  D  A  T  I  P  L  S  S  W  S  H  S  I  P  S   : D  R  A  H  L  E  W  K  S  A  S  W  I  *  F  N  Y  L  Q  E  C  :  V  C  W  K  H  Q  F  S  S  H  G  T  T  S  S  R  G  F  L  K  Y  R  S  P  *  G  L  *  A  Y  K  E  G  Q   : V  V  L  W  V  C  G  L  F  *  S  P  I  S  C  A  C  Y  C  E  P  Q  W  K  A  I  :  V  W  T  V  Y  K  S  *  L  G  L  C  Q  C  *  K  R  G  H  I  K :   S  F  *  H  I  C  W  *  S  *  S  G  G  Y  R  F  H  T  V  C  V  L  F  S  I  P  *  L  L  :  R  C  K  S  D  V  G  S  E  N  R  P  V  *  R  V  W  V  C  F  L  S  *  S  A   : G  S  P  K  C  N  R  *  L  E  W :   K  V  A  W  K  P  T  N  P  L  Q  L  G  S  K  R  C  W  S  Q  *  *  Q  P  E  F  R  C  *  K  C  C  *  V  D  N  W  N  I  R :   *  W  S  T  E  G  Q  R  R  R  S  R  K  *  S  A  V  H  N  C  I  C  W  Q  P  C  S  *   : C  H  Y  H  *  P  P  S  L  F  S  C  S  W  G  W  C  Y  C  *  C  P  Y  S  A  R  Q  R  I  W  L  C  T  I  Q  Q  S  C  *  S  S  S  S  N  S  I  R  K  C  S  N  P  L  W  *  T  Y  *   : V  L  M  G  K  Q  A  N  S  T  R  K  Q  H  E  P  S  T  T  S  C  Y  Q  T  T  P  W  Y  F  S  H  G  S  C  D  V  R  E  A  G  C  F  G  *  D  D  W  Y  A  D  S  H  A  T  P  G  T  A  N  W  R  C  *  S  G  S  V  *  W  W  H  C  F  P  A  A  T  G  I  L  L  V  V  D  S  I  K  T  C  K  H  L  L  L  L  V  L  C  A  I  L  S  D  R  I  L  L  S  F  F  L  S  I  V  S  F  L  *  L  P  L  I  P  S  D  R  M  Y  W  I  C  S  L  Y  S  V  *  E  *  K  L  *  Y  L  F  G  N  T  I  T  S  L  D  Y  Q  F  L  F  F  K  K  I  I  L  F </second_frame>
            <third_frame>   I  *  S  L  H  F  F  F  F  W  L  K  M  M  Q  Q  Q  R  L  K  Q  Q  Q  G  L  M  Q  Q  S  L  Y  H  P  G  L  I  A  S  P  Q  :  I  E  P  I  L  S  G  N  L  P  P  G  F  D  S  T  T  C  R  S  V :   Y  V  G  N  I  S  S  Q  V  T  E  Q  L  L  Q  E  V  F  S  S  T  G  P  L  E  G  C  K  L  I  R  K  D  K  :  S  S  Y  G  F  V  D  Y  F  D  R  Q  S  A  A  L  A  I  V  S  L  N  G  R  Q  L :   F  G  Q  C  I  K  V  N  W  A  Y  A  S  A  K  R  E  D  T  S   : N  H  F  S  I  F  V  G  D  L  S  P  E  V  T  D  S  T  L  F  A  C  F  S  V  Y  P  S  C  S :   D  A  R  V  M  W  D  Q  K  I  G  R  S  R  G  F  G  F  V  S  F  R  D  Q  Q  :  E  A  Q  S  A  I  D  D  L  N   : G  K  W  L  G  S  R  Q  I  R  C  N  W  A  A  K  G  A  G  A  S  N  D  N  R  S  S  D  A  K  S  A  V  E  L  T  T  G  T  S   : D  D  G  Q  L  K  A  N  E  D  A  P  E  N  N  P  Q  Y  T  T  V  Y  V  G  N  L  A  P  D  :  V  T  T  I  D  L  H  R  Y  F  H  A  L  G  A  G  V  I  A  D  V  R  I  Q  R  D  R  G  F  G  F  V  R  Y  S  N  H  A  E  A  A  R  A  I  Q  L  G  N  A  R  I  L  F  G  K  P  I  K  :  C  S  W  G  S  K  P  T  P  P  G  S  S  T  N  P  L  P  P  P  V  I  R  Q  L  P  G  I  S  A  M  G  L  A  M  Y  E  R  Q  V  A  L  A  R  M  T  G  M  Q  T  L  M  Q  H  Q  G  Q  R  I  G  V  A  S  Q  V  L  Y  D  G  G  I  A  S  P  Q  P  P  V  Y  Y  *  L  L  I  Q  *  K  L  V  N  T  C  C  C  *  F  S  V  L  F  *  V  I  E  S  S  S  L  F  F  Y  L  L  L  V  F  F  S  F  L  *  Y  H  Q  T  E  C  I  G  Y  V  V  C  I  L  F  E  N  E  S  Y  N  I  S  L  E  I  Q  S  L  H  W  I  I  S  F  F  F  S  K  K  L  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34859" stop="34972"/>
                    <exon start="36524" stop="36585"/>
                    <exon start="37350" stop="37452"/>
                    <exon start="38133" stop="38209"/>
                    <exon start="38284" stop="38345"/>
                    <exon start="38433" stop="38520"/>
                    <exon start="38625" stop="38700"/>
                    <exon start="38809" stop="38839"/>
                    <exon start="39564" stop="39683"/>
                    <exon start="40050" stop="40135"/>
                    <exon start="40244" stop="40417"/>
                    <exon start="40507" stop="40749"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1233</number_coding_nucleotides>
                  <number_encoded_amino_acids>411</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLHFFFFWLKMMQQQRLKQQQGLMQQSLYHPGLIASPQIEPILSGNLPPGFDSTTCRSVYVGNISSQVTEQLLQEVFSSTGPLEGCKLIRKDKSSYGFVDYFDRQSAALAIVSLNGRQLFGQCIKVNWAYASAKREDTSNHFSIFVGDLSPEVTDSTLFACFSVYPSCSDARVMWDQKIGRSRGFGFVSFRDQQEAQSAIDDLNGKWLGSRQIRCNWAAKGAGASNDNRSSDAKSAVELTTGTSDDGQLKANEDAPENNPQYTTVYVGNLAPDVTTIDLHRYFHALGAGVIADVRIQRDRGFGFVRYSNHAEAARAIQLGNARILFGKPIKCSWGSKPTPPGSSTNPLPPPVIRQLPGISAMGLAMYERQVALARMTGMQTLMQHQGQRIGVASQVLYDGGIASPQPPVYY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="46117" PGL_stop="46725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46117" e_stop="46725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="46117" e_stop="46725" e_length="609"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46117" stop="46725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46420" stop="46606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590133" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCTTAATGAATTTAAATAATATTACATATATATATATAAATATAATAAAGTACTTAATAACAAACATAGTCTTGATTACAAAAAAAAAATGTTAAAAATAGTATTTCATAGTTAGATCAAAGTGGCTTCAATCAATCTCGAAACCAACTAAAAAAAACCAAAAACTTGGTTATCTAATAGTAGTATATCAAAGCAATAGGCCTATAATCATCAGGGCAGTCTGGTGTACTAAGCTCTCTGTGACAGTCCTTTTGCTTTCCACAGCTCGAACCTGTTACCTCCTGGTCCACATAACACTAACTTTTACCAGTTACGTCACACCAAGACTTCCCTTCTTCAATAATCAAAAATGAAAACAAAACAAAAAAAAACAAGAATAGTAACTAGAAATATTGCTCAGTTTTAACAAATTGAGCACCTAATCCCAACCATGCTTTGTTATCCTCATTCTTGGATTTCTTGTTGTTGGAGATTTGGTATGGTGCAATTGATGTTACTCTATCTTTCCTTTTCTCCAAGAATCTTGTAAGTGAATTCCGTCTCGCGATTGGTAAATCAGCAACAGAAGGCTGTGGCATTGACAGTTTAGGAAGTTCTTGAATCAATT</gDNA_template>
            <first_frame> N  L  N  E  F  K  *  Y  Y  I  Y  I  Y  K  Y  N  K  V  L  N  N  K  H  S  L  D  Y  K  K  K  M  L  K  I  V  F  H  S  *  I  K  V  A  S  I  N  L  E  T  N  *  K  K  P  K  T  W  L  S  N  S  S  I  S  K  Q  *  A  Y  N  H  Q  G  S  L  V  Y  *  A  L  C  D  S  P  F  A  F  H  S  S  N  L  L  P  P  G  P  H  N  T  N  F  Y  Q  L  R  H  T  K  T  S  L  L  Q  *  S  K  M  K  T  K  Q  K  K  T  R  I  V  T  R  N  I  A  Q  F  *  Q  I  E  H  L  I  P  T  M  L  C  Y  P  H  S  W  I  S  C  C  W  R  F  G  M  V  Q  L  M  L  L  Y  L  S  F  S  P  R  I  L  *  V  N  S  V  S  R  L  V  N  Q  Q  Q  K  A  V  A  L  T  V  *  E  V  L  E  S  I </first_frame>
            <second_frame>  T  L  M  N  L  N  N  I  T  Y  I  Y  I  N  I  I  K  Y  L  I  T  N  I  V  L  I  T  K  K  K  C  *  K  *  Y  F  I  V  R  S  K  W  L  Q  S  I  S  K  P  T  K  K  N  Q  K  L  G  Y  L  I  V  V  Y  Q  S  N  R  P  I  I  I  R  A  V  W  C  T  K  L  S  V  T  V  L  L  L  S  T  A  R  T  C  Y  L  L  V  H  I  T  L  T  F  T  S  Y  V  T  P  R  L  P  F  F  N  N  Q  K  *  K  Q  N  K  K  K  Q  E  *  *  L  E  I  L  L  S  F  N  K  L  S  T  *  S  Q  P  C  F  V  I  L  I  L  G  F  L  V  V  G  D  L  V  W  C  N  *  C  Y  S  I  F  P  F  L  Q  E  S  C  K  *  I  P  S  R  D  W  *  I  S  N  R  R  L  W  H  *  Q  F  R  K  F  L  N  Q   </second_frame>
            <third_frame>   P  *  *  I  *  I  I  L  H  I  Y  I  *  I  *  *  S  T  *  *  Q  T  *  S  *  L  Q  K  K  N  V  K  N  S  I  S  *  L  D  Q  S  G  F  N  Q  S  R  N  Q  L  K  K  T  K  N  L  V  I  *  *  *  Y  I  K  A  I  G  L  *  S  S  G  Q  S  G  V  L  S  S  L  *  Q  S  F  C  F  P  Q  L  E  P  V  T  S  W  S  T  *  H  *  L  L  P  V  T  S  H  Q  D  F  P  S  S  I  I  K  N  E  N  K  T  K  K  N  K  N  S  N  *  K  Y  C  S  V  L  T  N  *  A  P  N  P  N  H  A  L  L  S  S  F  L  D  F  L  L  L  E  I  W  Y  G  A  I  D  V  T  L  S  F  L  F  S  K  N  L  V  S  E  F  R  L  A  I  G  K  S  A  T  E  G  C  G  I  D  S  L  G  S  S  *  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46220" stop="46471"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFIVRSKWLQSISKPTKKNQKLGYLIVVYQSNRPIIIRAVWCTKLSVTVLLLSTARTCYLLVHITLTFTSYVTPRLPFFNNQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="48650" PGL_stop="46169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48650" e_stop="48408"/>
            <exon e_start="47103" e_stop="46169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48650" e_stop="48408" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="47103" e_stop="46169" e_length="935"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48650" stop="48408"/>
              <exon start="47103" stop="46169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48638" stop="48408"/>
              <exon start="47103" stop="46979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTATTCATCCAAACAGTTCACAAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG : GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTGTTTTTTTTTGTTTTGTTTTCATTTTTGATTATTGAAGAAGGGAAGTCTTGGTGTGACGTAACTGGTAAAAGTTAGTGTTATGTGGACCAGGAGGTAACAGGTTCGAGCTGTGGAAAGCAAAAGGACTGTCACAGAGAGCTTAGTACACCAGACTGCCCTGATGATTATAGGCCTATTGCTTTGATATACTACTATTAGATAACCAAGTTTTTGGTTTTTTTTAGTTGGTTTCGAGATTGATTGAAGCCACTTTGATCTAACTATGAAATACTATTTTTAACATTTTTTTTTTGTAATCAAGACTATGTTTGTTATTAAGTA</gDNA_template>
            <first_frame> I  I  H  P  N  S  S  Q  K  S  I  S  *  Y  F  N  F  L  K  Y  F  I  F  L  A  G  K  T  R  W  G  H  R  K  I  W  I  P  A  R  *  P  D  R  N  L  S  F  L  R  L  V  T  F  *  V  N  S  *  R  K  K  V  L  L  E  I  L  I  I  L  V  S  T  K  L  L  L  N  Q  L  :  D  L  N  K  Q  L  L  P  P  Q  L  L  *  I  C  Y  Q  *  L  R  N  Q  V  I  H  R  R  H  R  R  P  L  K  Q  I  L  K  N  P  *  I  F  S  L  K  N  L  I  S  P  K  N  N  P  Q  K  R  Q  N  L  G  N  L  I  N  Q  R  R  H  K  *  P  F  F  M  V  D  K  S  L  F  L  M  I  F  Q  L  I  K  Q  M  K  S  *  S  *  P  T  N  R  T  P  Q  T  I  S  L  I  L  *  S  R  I  K  K  Q  L  I  N  L  V  *  V  L  V  T  N  *  F  K  N  F  L  N  C  Q  C  H  S  L  L  L  L  I  Y  Q  S  R  D  G  I  H  L  Q  D  S  W  R  K  G  K  I  E  *  H  Q  L  H  H  T  K  S  P  T  T  R  N  P  R  M  R  I  T  K  H  G  W  D  *  V  L  N  L  L  K  L  S  N  I  S  S  Y  Y  S  C  F  F  L  F  C  F  H  F  *  L  L  K  K  G  S  L  G  V  T  *  L  V  K  V  S  V  M  W  T  R  R  *  Q  V  R  A  V  E  S  K  R  T  V  T  E  S  L  V  H  Q  T  A  L  M  I  I  G  L  L  L  *  Y  T  T  I  R  *  P  S  F  W  F  F  L  V  G  F  E  I  D  *  S  H  F  D  L  T  M  K  Y  Y  F  *  H  F  F  F  V  I  K  T  M  F  V  I  K   </first_frame>
            <second_frame>  L  F  I  Q  T  V  H  K  K  A  F  L  D  I  S  T  F  S  N  I  S  F  F  W  P  E  K  Q  D  G  V  I  G  K  Y  G  F  R  Q  G  D  R  T  E  I  S  V  F  S  D  L  *  P  F  E  S  I  L  E  E  K  R  F  C  W  R  S  *  *  S  W  Y  L  Q  N  Y  F  *  I  N  W :   I  S  T  N  S  Y  Y  H  H  N  Y  Y  E  F  V  T  N  D  *  E  I  K  *  F  I  V  V  I  V  V  R  *  N  K  S  S  K  T  H  E  S  F  P  S  R  I  *  F  L  Q  R  T  I  H  K  K  D  R  I  L  E  T  *  S  T  R  E  G  T  N  D  H  F  L  W  W  T  S  H  C  F  *  *  F  S  S  *  *  S  K  *  N  H  E  V  S  Q  Q  T  E  P  H  K  Q  F  H  L  S  Y  D  Q  E  S  K  N  S  *  S  I  W  C  E  F  W  *  Q  I  D  S  R  T  S  *  T  V  N  A  T  A  F  C  C  *  F  T  N  R  E  T  E  F  T  Y  K  I  L  G  E  K  E  R  *  S  N  I  N  C  T  I  P  N  L  Q  Q  Q  E  I  Q  E  *  G  *  Q  S  M  V  G  I  R  C  S  I  C  *  N  *  A  I  F  L  V  T  I  L  V  F  F  C  F  V  F  I  F  D  Y  *  R  R  E  V  L  V  *  R  N  W  *  K  L  V  L  C  G  P  G  G  N  R  F  E  L  W  K  A  K  G  L  S  Q  R  A  *  Y  T  R  L  P  *  *  L  *  A  Y  C  F  D  I  L  L  L  D  N  Q  V  F  G  F  F  *  L  V  S  R  L  I  E  A  T  L  I  *  L  *  N  T  I  F  N  I  F  F  L  *  S  R  L  C  L  L  L  S  </second_frame>
            <third_frame>   Y  S  S  K  Q  F  T  K  K  H  F  L  I  F  Q  L  S  Q  I  F  H  F  F  G  R  K  N  K  M  G  S  S  E  N  M  D  S  G  K  V  T  G  Q  K  S  Q  F  S  Q  T  C  N  L  L  S  Q  F  L  K  K  K  G  S  V  G  D  L  N  N  L  G  I  Y  K  T  T  F  E  S  T   : G  S  Q  Q  T  A  T  T  T  T  T  T  M  N  L  L  P  M  I  E  K  S  S  D  S  S  S  S  S  S  S  V  E  T  N  P  Q  K  P  M  N  L  F  P  Q  E  F  D  F  S  K  E  Q  S  T  K  K  T  E  S  W  K  P  D  Q  P  E  K  A  Q  M  T  I  F  Y  G  G  Q  V  I  V  F  D  D  F  P  A  D  K  A  N  E  I  M  K  L  A  N  K  Q  N  P  T  N  N  F  T  Y  P  M  I  K  N  Q  K  T  A  D  Q  S  G  V  S  F  G  N  K  L  I  Q  E  L  P  K  L  S  M  P  Q  P  S  V  A  D  L  P  I  A  R  R  N  S  L  T  R  F  L  E  K  R  K  D  R  V  T  S  I  A  P  Y  Q  I  S  N  N  K  K  S  K  N  E  D  N  K  A  W  L  G  L  G  A  Q  F  V  K  T  E  Q  Y  F  *  L  L  F  L  F  F  F  V  L  F  S  F  L  I  I  E  E  G  K  S  W  C  D  V  T  G  K  S  *  C  Y  V  D  Q  E  V  T  G  S  S  C  G  K  Q  K  D  C  H  R  E  L  S  T  P  D  C  P  D  D  Y  R  P  I  A  L  I  Y  Y  Y  *  I  T  K  F  L  V  F  F  S  W  F  R  D  *  L  K  P  L  *  S  N  Y  E  I  L  F  L  T  F  F  F  C  N  Q  D  Y  V  C  Y  *  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48648" stop="48408"/>
                    <exon start="47103" stop="46502"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSSKQFTKKHFLIFQLSQIFHFFGRKNKMGSSENMDSGKVTGQKSQFSQTCNLLSQFLKKKGSVGDLNNLGIYKTTFESTGSQQTATTTTTTMNLLPMIEKSSDSSSSSSSVETNPQKPMNLFPQEFDFSKEQSTKKTESWKPDQPEKAQMTIFYGGQVIVFDDFPADKANEIMKLANKQNPTNNFTYPMIKNQKTADQSGVSFGNKLIQELPKLSMPQPSVADLPIARRNSLTRFLEKRKDRVTSIAPYQISNNKKSKNEDNKAWLGLGAQFVKTEQYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="56244" PGL_stop="54070"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56244" e_stop="55996"/>
            <exon e_start="55551" e_stop="55398"/>
            <exon e_start="54802" e_stop="54070"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56244" e_stop="55996" e_length="249"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55995" i_stop="55552" i_length="444"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55551" e_stop="55398" e_length="154"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.943">
            <gDNA_intron_boundary i_start="55397" i_stop="54803" i_length="595"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="54802" e_stop="54070" e_length="733"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56244" stop="55996"/>
              <exon start="55551" stop="55398"/>
              <exon start="54802" stop="54070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585088" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCATAATGGTACAATTAATGGGCAGGGTCAAGCATGGTGGAAGAAATTCCGGCAGAAGCTTCTTAACCATTCCCGAGGACCGCTCGTGCAGATCATGTGGTCTACTGACATCCTAATATCAAATATAACTTTACAAGATTCTCCCTTTTGGACACTCCATCCATATGACTGCAAGAATGTAACAATCAGGAATGTTACAATCCTGGCACCCATTGCTGGGGCTCCGAATACTGATGGCATAGATCCAG : ATTCTTGTGAAGATGTGTTGATAGAGAACTGTTACATCAGCGTTGGTGATGATGGCATCGCAATAAAGAGTGGATGGGATCAGTATGGAATTGCTTATGGACGACCTTCAAAGAATATACTCATTCGAAACCTTGTCATTCGTTCCAATGTCAG : TGCTGGTGTATCAATAGGAAGTGAGATGTCTGGTGGAGTGTCAAATGTCACTGTGGAAAACCTCTTTATCTGGAACTCAAGACGTGCTGTACGCATCAAAACAGCACCTGGAAGAGGAGGATACGTTCGAGATATAACATACAAGAACTTGACATTTGAAAACGTTAGGGTGGGAATCGTCATCAAAACAGATTACAATGAACATGCTGACGAGAGTTTTGACCCCAAAGCTGTCCCATTACTGGAAAACATAAGCTACACAACAATCCACGGTGAGGGAGTTCGCGTGCCTGTTCAAATCCACGGTAGCAAAGAAATCTGGGTGAGAAACGTCACTTTTAGAGATATGTCGATTGGGTTAACATACAAGAAGAAGCATATATTCCAGTGTGCTTACGTTCAAGGTCGTGTTATAGGGACTATCTTCCCTGCTCCTTGCAAGAACCTCGATCTATATGACGAACAAGGACATCTGATCAGACGTTCTGATGCTCAAAACGCAACAGACATAGATTATGACATTTGAACTGATTCCACGGAATGCCTTCATAGCGGGAGCTTAGTGCACCGGGCAGTGTTTTATTTTATTTTCTCATTACATTTTGTTCTCTGCATTATACATACAGAACCAAGTCCCTTTTGATGTATTCAAAAAACCCACAGATCCAATGTAAAGAACACTTCCTTTGTTCCTGTACAGAATCTTAGTTCCATCAAAGTAATGTTTTTAACT</gDNA_template>
            <first_frame> G  I  M  V  Q  L  M  G  R  V  K  H  G  G  R  N  S  G  R  S  F  L  T  I  P  E  D  R  S  C  R  S  C  G  L  L  T  S  *  Y  Q  I  *  L  Y  K  I  L  P  F  G  H  S  I  H  M  T  A  R  M  *  Q  S  G  M  L  Q  S  W  H  P  L  L  G  L  R  I  L  M  A  *  I  Q  :  I  L  V  K  M  C  *  *  R  T  V  T  S  A  L  V  M  M  A  S  Q  *  R  V  D  G  I  S  M  E  L  L  M  D  D  L  Q  R  I  Y  S  F  E  T  L  S  F  V  P  M  S   : V  L  V  Y  Q  *  E  V  R  C  L  V  E  C  Q  M  S  L  W  K  T  S  L  S  G  T  Q  D  V  L  Y  A  S  K  Q  H  L  E  E  E  D  T  F  E  I  *  H  T  R  T  *  H  L  K  T  L  G  W  E  S  S  S  K  Q  I  T  M  N  M  L  T  R  V  L  T  P  K  L  S  H  Y  W  K  T  *  A  T  Q  Q  S  T  V  R  E  F  A  C  L  F  K  S  T  V  A  K  K  S  G  *  E  T  S  L  L  E  I  C  R  L  G  *  H  T  R  R  S  I  Y  S  S  V  L  T  F  K  V  V  L  *  G  L  S  S  L  L  L  A  R  T  S  I  Y  M  T  N  K  D  I  *  S  D  V  L  M  L  K  T  Q  Q  T  *  I  M  T  F  E  L  I  P  R  N  A  F  I  A  G  A  *  C  T  G  Q  C  F  I  L  F  S  H  Y  I  L  F  S  A  L  Y  I  Q  N  Q  V  P  F  D  V  F  K  K  P  T  D  P  M  *  R  T  L  P  L  F  L  Y  R  I  L  V  P  S  K  *  C  F  *   </first_frame>
            <second_frame>  A  *  W  Y  N  *  W  A  G  S  S  M  V  E  E  I  P  A  E  A  S  *  P  F  P  R  T  A  R  A  D  H  V  V  Y  *  H  P  N  I  K  Y  N  F  T  R  F  S  L  L  D  T  P  S  I  *  L  Q  E  C  N  N  Q  E  C  Y  N  P  G  T  H  C  W  G  S  E  Y  *  W  H  R  S  R :   F  L  *  R  C  V  D  R  E  L  L  H  Q  R  W  *  *  W  H  R  N  K  E  W  M  G  S  V  W  N  C  L  W  T  T  F  K  E  Y  T  H  S  K  P  C  H  S  F  Q  C  Q  :  C  W  C  I  N  R  K  *  D  V  W  W  S  V  K  C  H  C  G  K  P  L  Y  L  E  L  K  T  C  C  T  H  Q  N  S  T  W  K  R  R  I  R  S  R  Y  N  I  Q  E  L  D  I  *  K  R  *  G  G  N  R  H  Q  N  R  L  Q  *  T  C  *  R  E  F  *  P  Q  S  C  P  I  T  G  K  H  K  L  H  N  N  P  R  *  G  S  S  R  A  C  S  N  P  R  *  Q  R  N  L  G  E  K  R  H  F  *  R  Y  V  D  W  V  N  I  Q  E  E  A  Y  I  P  V  C  L  R  S  R  S  C  Y  R  D  Y  L  P  C  S  L  Q  E  P  R  S  I  *  R  T  R  T  S  D  Q  T  F  *  C  S  K  R  N  R  H  R  L  *  H  L  N  *  F  H  G  M  P  S  *  R  E  L  S  A  P  G  S  V  L  F  Y  F  L  I  T  F  C  S  L  H  Y  T  Y  R  T  K  S  L  L  M  Y  S  K  N  P  Q  I  Q  C  K  E  H  F  L  C  S  C  T  E  S  *  F  H  Q  S  N  V  F  N  </second_frame>
            <third_frame>   H  N  G  T  I  N  G  Q  G  Q  A  W  W  K  K  F  R  Q  K  L  L  N  H  S  R  G  P  L  V  Q  I  M  W  S  T  D  I  L  I  S  N  I  T  L  Q  D  S  P  F  W  T  L  H  P  Y  D  C  K  N  V  T  I  R  N  V  T  I  L  A  P  I  A  G  A  P  N  T  D  G  I  D  P   : D  S  C  E  D  V  L  I  E  N  C  Y  I  S  V  G  D  D  G  I  A  I  K  S  G  W  D  Q  Y  G  I  A  Y  G  R  P  S  K  N  I  L  I  R  N  L  V  I  R  S  N  V  S :   A  G  V  S  I  G  S  E  M  S  G  G  V  S  N  V  T  V  E  N  L  F  I  W  N  S  R  R  A  V  R  I  K  T  A  P  G  R  G  G  Y  V  R  D  I  T  Y  K  N  L  T  F  E  N  V  R  V  G  I  V  I  K  T  D  Y  N  E  H  A  D  E  S  F  D  P  K  A  V  P  L  L  E  N  I  S  Y  T  T  I  H  G  E  G  V  R  V  P  V  Q  I  H  G  S  K  E  I  W  V  R  N  V  T  F  R  D  M  S  I  G  L  T  Y  K  K  K  H  I  F  Q  C  A  Y  V  Q  G  R  V  I  G  T  I  F  P  A  P  C  K  N  L  D  L  Y  D  E  Q  G  H  L  I  R  R  S  D  A  Q  N  A  T  D  I  D  Y  D  I  *  T  D  S  T  E  C  L  H  S  G  S  L  V  H  R  A  V  F  Y  F  I  F  S  L  H  F  V  L  C  I  I  H  T  E  P  S  P  F  *  C  I  Q  K  T  H  R  S  N  V  K  N  T  S  F  V  P  V  Q  N  L  S  S  I  K  V  M  F  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56242" stop="55996"/>
                    <exon start="55551" stop="55398"/>
                    <exon start="54802" stop="54277"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HNGTINGQGQAWWKKFRQKLLNHSRGPLVQIMWSTDILISNITLQDSPFWTLHPYDCKNVTIRNVTILAPIAGAPNTDGIDPDSCEDVLIENCYISVGDDGIAIKSGWDQYGIAYGRPSKNILIRNLVIRSNVSAGVSIGSEMSGGVSNVTVENLFIWNSRRAVRIKTAPGRGGYVRDITYKNLTFENVRVGIVIKTDYNEHADESFDPKAVPLLENISYTTIHGEGVRVPVQIHGSKEIWVRNVTFRDMSIGLTYKKKHIFQCAYVQGRVIGTIFPAPCKNLDLYDEQGHLIRRSDAQNATDIDYDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="60699" PGL_stop="59947"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60699" e_stop="59947"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="60699" e_stop="59947" e_length="753"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60699" stop="59947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575278" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGCGCCTTGATTAACACTAAACCTTTTTGTGTTAATCAAAAATCAATTAACCATCAAAACTATATTGTTCTAGTCTTCTTCTTCTTCCTTTGAATGTACTCAACCATTCCACTAATCCTGACCACTACACTTCACCTTCCAATTCTTGAAACTCCATTAATGAATCTTTAAACCCCATTTGATTTCTTGATGTTTCCCACTTAGCAATTTATAGAAAGTTTAAAAATTGAATCTTTGATTGGTTCTAGGAATTGGGTTGTTCATAATTTTCTGTATTAAGATCCCAAGATTAATTCTTTTTTGGTATATTATATGGTGGAAACAGTGACATCGTCGTTTTGGTGGCGGTGGACGCAACCCCATCACCACCCACGTCGATGGGTGCCGTCAGTTTTCACCACCCACAAAGCCATTATCACTGCTGTGTGGATCGCTTTCTTGGTAACCGTTTTCTGGTGGCAGGTTGATGCTACCGCCGGAATCTTGATTTTCCGGCGGGTTTTCCCGGCGAGGGAGGTGCCGAAGTTCCGGCCGGTGGCGTTTAACTTGACGGACTTTGGTGGGGTTGGGGATGGTGTAACTGTTAATACGGAGGCGTTTGAGAAGGCAATATTAGCTATTGCTAAACTTGGGAAGAAAGGTGGAGGGCAGCTCAATGTGCCACCGGGATATTGGCTGACGGCTCCGTTTAATCTTACTAGCCATATGACTCTGTTCCTTGCTGAGGGAGCTGTTATATTGGGTATTGAT</gDNA_template>
            <first_frame> L  G  A  L  I  N  T  K  P  F  C  V  N  Q  K  S  I  N  H  Q  N  Y  I  V  L  V  F  F  F  F  L  *  M  Y  S  T  I  P  L  I  L  T  T  T  L  H  L  P  I  L  E  T  P  L  M  N  L  *  T  P  F  D  F  L  M  F  P  T  *  Q  F  I  E  S  L  K  I  E  S  L  I  G  S  R  N  W  V  V  H  N  F  L  Y  *  D  P  K  I  N  S  F  L  V  Y  Y  M  V  E  T  V  T  S  S  F  W  W  R  W  T  Q  P  H  H  H  P  R  R  W  V  P  S  V  F  T  T  H  K  A  I  I  T  A  V  W  I  A  F  L  V  T  V  F  W  W  Q  V  D  A  T  A  G  I  L  I  F  R  R  V  F  P  A  R  E  V  P  K  F  R  P  V  A  F  N  L  T  D  F  G  G  V  G  D  G  V  T  V  N  T  E  A  F  E  K  A  I  L  A  I  A  K  L  G  K  K  G  G  G  Q  L  N  V  P  P  G  Y  W  L  T  A  P  F  N  L  T  S  H  M  T  L  F  L  A  E  G  A  V  I  L  G  I  D </first_frame>
            <second_frame>  *  A  P  *  L  T  L  N  L  F  V  L  I  K  N  Q  L  T  I  K  T  I  L  F  *  S  S  S  S  S  F  E  C  T  Q  P  F  H  *  S  *  P  L  H  F  T  F  Q  F  L  K  L  H  *  *  I  F  K  P  H  L  I  S  *  C  F  P  L  S  N  L  *  K  V  *  K  L  N  L  *  L  V  L  G  I  G  L  F  I  I  F  C  I  K  I  P  R  L  I  L  F  W  Y  I  I  W  W  K  Q  *  H  R  R  F  G  G  G  G  R  N  P  I  T  T  H  V  D  G  C  R  Q  F  S  P  P  T  K  P  L  S  L  L  C  G  S  L  S  W  *  P  F  S  G  G  R  L  M  L  P  P  E  S  *  F  S  G  G  F  S  R  R  G  R  C  R  S  S  G  R  W  R  L  T  *  R  T  L  V  G  L  G  M  V  *  L  L  I  R  R  R  L  R  R  Q  Y  *  L  L  L  N  L  G  R  K  V  E  G  S  S  M  C  H  R  D  I  G  *  R  L  R  L  I  L  L  A  I  *  L  C  S  L  L  R  E  L  L  Y  W  V  L   </second_frame>
            <third_frame>   R  R  L  D  *  H  *  T  F  L  C  *  S  K  I  N  *  P  S  K  L  Y  C  S  S  L  L  L  L  P  L  N  V  L  N  H  S  T  N  P  D  H  Y  T  S  P  S  N  S  *  N  S  I  N  E  S  L  N  P  I  *  F  L  D  V  S  H  L  A  I  Y  R  K  F  K  N  *  I  F  D  W  F  *  E  L  G  C  S  *  F  S  V  L  R  S  Q  D  *  F  F  F  G  I  L  Y  G  G  N  S  D  I  V  V  L  V  A  V  D  A  T  P  S  P  P  T  S  M  G  A  V  S  F  H  H  P  Q  S  H  Y  H  C  C  V  D  R  F  L  G  N  R  F  L  V  A  G  *  C  Y  R  R  N  L  D  F  P  A  G  F  P  G  E  G  G  A  E  V  P  A  G  G  V  *  L  D  G  L  W  W  G  W  G  W  C  N  C  *  Y  G  G  V  *  E  G  N  I  S  Y  C  *  T  W  E  E  R  W  R  A  A  Q  C  A  T  G  I  L  A  D  G  S  V  *  S  Y  *  P  Y  D  S  V  P  C  *  G  S  C  Y  I  G  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60417" stop="59947"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPKINSFLVYYMVETVTSSFWWRWTQPHHHPRRWVPSVFTTHKAIITAVWIAFLVTVFWWQVDATAGILIFRRVFPAREVPKFRPVAFNLTDFGGVGDGVTVNTEAFEKAILAIAKLGKKGGGQLNVPPGYWLTAPFNLTSHMTLFLAEGAVILGID</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="63486" PGL_stop="65549"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63486" e_stop="63514"/>
            <exon e_start="64057" e_stop="64221"/>
            <exon e_start="64897" e_stop="64934"/>
            <exon e_start="65422" e_stop="65549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63486" e_stop="63514" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="63515" i_stop="64056" i_length="542"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="64057" e_stop="64221" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64222" i_stop="64896" i_length="675"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64897" e_stop="64934" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64935" i_stop="65421" i_length="487"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65422" e_stop="65549" e_length="128"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63486" stop="63514"/>
              <exon start="64057" stop="64221"/>
              <exon start="64897" stop="64934"/>
              <exon start="65422" stop="65549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603903" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCACAGCTTTTTCTAGCATCCCAATCAG : GGAGCTACCTACAAAAACTTTTTCAGGGAAATTTACAACATGTATGTTGTCTAGAAAAAGTAGATTGTATGCTGGTAAAGAAGTGTCAAGTGTTTGTGAACCACTTCCTCCAGATAGGCCACTATGGTTTCCTGGAAGTTCACCTCCAGAATGGCTTGATGGCAG : TTTGCCTGGAGATTTTGGCTTTGATCCACTGGGACTAG : GGTCTGATCCAGAGTCACTGAAATGGTTTGCTCAAGCTGAGCTAATACACAGCAGATGGGCAATGTTAGCAGTATCTGGAATTCTAATCCCAGAATGGTTAGAAAGTCTTGGATTCATCGACAACTTT</gDNA_template>
            <first_frame> S  T  A  F  S  S  I  P  I  R :   E  L  P  T  K  T  F  S  G  K  F  T  T  C  M  L  S  R  K  S  R  L  Y  A  G  K  E  V  S  S  V  C  E  P  L  P  P  D  R  P  L  W  F  P  G  S  S  P  P  E  W  L  D  G  S :   L  P  G  D  F  G  F  D  P  L  G  L   : G  S  D  P  E  S  L  K  W  F  A  Q  A  E  L  I  H  S  R  W  A  M  L  A  V  S  G  I  L  I  P  E  W  L  E  S  L  G  F  I  D  N  F </first_frame>
            <second_frame>  P  Q  L  F  L  A  S  Q  S   : G  S  Y  L  Q  K  L  F  Q  G  N  L  Q  H  V  C  C  L  E  K  V  D  C  M  L  V  K  K  C  Q  V  F  V  N  H  F  L  Q  I  G  H  Y  G  F  L  E  V  H  L  Q  N  G  L  M  A   : V  C  L  E  I  L  A  L  I  H  W  D  *  :  G  L  I  Q  S  H  *  N  G  L  L  K  L  S  *  Y  T  A  D  G  Q  C  *  Q  Y  L  E  F  *  S  Q  N  G  *  K  V  L  D  S  S  T  T   </second_frame>
            <third_frame>   H  S  F  F  *  H  P  N  Q  :  G  A  T  Y  K  N  F  F  R  E  I  Y  N  M  Y  V  V  *  K  K  *  I  V  C  W  *  R  S  V  K  C  L  *  T  T  S  S  R  *  A  T  M  V  S  W  K  F  T  S  R  M  A  *  W  Q  :  F  A  W  R  F  W  L  *  S  T  G  T  R :   V  *  S  R  V  T  E  M  V  C  S  S  *  A  N  T  Q  Q  M  G  N  V  S  S  I  W  N  S  N  P  R  M  V  R  K  S  W  I  H  R  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63486" stop="63514"/>
                    <exon start="64057" stop="64221"/>
                    <exon start="64897" stop="64934"/>
                    <exon start="65422" stop="65549"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STAFSSIPIRELPTKTFSGKFTTCMLSRKSRLYAGKEVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHSRWAMLAVSGILIPEWLESLGFIDNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="66669" PGL_stop="67459"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66669" e_stop="67459"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="66669" e_stop="67459" e_length="791"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66669" stop="67459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAACACCTATCCCTCCACACAAATCTTTGTCAAAACAACAACACCCCACCCCCACCCCCACCACACATGATCATTCCAGGGTCCAAAACAACCAAACCAATATCAAGAAAATTATCAAACACCTTCAAAGAAAAGAAAAAGAGAAGCATTTGCAGATTGTTTCTATAAGGGGGAGGTGGACATGTCTAGTAACAAACATGGCCGCCGTTCCCCTAACCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTTCTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAGTCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTGAAGGCCTCCTTTTAGGTGAAGCTGGCTTATCAGGAGAACTTGATATTGATCCATTGATTGCACTTCCAGGCCTCCGAGTTCTTGATATCGCGAATAATTCATTTTCAGGCTTAATCCCTGAATTCTTCTTGCTTGGTGCACTTAAATCTATATATATAGATGGAAACCAATTCTCAGGTGAGATTCCTAAAGATTTCTTTGCCAAAATGGGGTCTCTTAAGAAGATATGGCTTGCACGAAACAAATTTTCCGGAGCAATTCCTGAATCATTAGCCAGCTTGAAGTACTTGATGGAACTTCGACTTGAAAGTAATGCATTTA</gDNA_template>
            <first_frame> S  N  T  Y  P  S  T  Q  I  F  V  K  T  T  T  P  H  P  H  P  H  H  T  *  S  F  Q  G  P  K  Q  P  N  Q  Y  Q  E  N  Y  Q  T  P  S  K  K  R  K  R  E  A  F  A  D  C  F  Y  K  G  E  V  D  M  S  S  N  K  H  G  R  R  S  P  N  P  S  S  P  S  S  S  I  V  S  *  K  T  P  S  F  P  Y  S  Y  I  H  F  L  P  H  F  S  M  *  S  T  I  F  F  L  H  F  R  G  R  C  L  D  Q  I  Q  K  I  F  K  E  H  H  I  S  R  F  I  L  G  *  R  Y  *  S  M  *  K  K  Q  E  M  G  S  C  S  M  R  T  *  R  G  *  R  P  P  F  R  *  S  W  L  I  R  R  T  *  Y  *  S  I  D  C  T  S  R  P  P  S  S  *  Y  R  E  *  F  I  F  R  L  N  P  *  I  L  L  A  W  C  T  *  I  Y  I  Y  R  W  K  P  I  L  R  *  D  S  *  R  F  L  C  Q  N  G  V  S  *  E  D  M  A  C  T  K  Q  I  F  R  S  N  S  *  I  I  S  Q  L  E  V  L  D  G  T  S  T  *  K  *  C  I   </first_frame>
            <second_frame>  Q  T  P  I  P  P  H  K  S  L  S  K  Q  Q  H  P  T  P  T  P  T  T  H  D  H  S  R  V  Q  N  N  Q  T  N  I  K  K  I  I  K  H  L  Q  R  K  E  K  E  K  H  L  Q  I  V  S  I  R  G  R  W  T  C  L  V  T  N  M  A  A  V  P  L  T  L  H  L  L  P  R  A  S  S  P  K  K  H  H  L  F  L  I  H  I  S  I  F  F  L  I  S  L  C  N  P  Q  F  S  F  S  I  S  E  D  D  A  L  I  K  F  K  K  S  L  K  N  T  T  S  L  D  S  S  W  V  K  G  T  S  P  C  E  K  N  K  R  W  A  R  V  Q  C  E  R  N  V  V  E  G  L  L  L  G  E  A  G  L  S  G  E  L  D  I  D  P  L  I  A  L  P  G  L  R  V  L  D  I  A  N  N  S  F  S  G  L  I  P  E  F  F  L  L  G  A  L  K  S  I  Y  I  D  G  N  Q  F  S  G  E  I  P  K  D  F  F  A  K  M  G  S  L  K  K  I  W  L  A  R  N  K  F  S  G  A  I  P  E  S  L  A  S  L  K  Y  L  M  E  L  R  L  E  S  N  A  F  </second_frame>
            <third_frame>   K  H  L  S  L  H  T  N  L  C  Q  N  N  N  T  P  P  P  P  P  P  H  M  I  I  P  G  S  K  T  T  K  P  I  S  R  K  L  S  N  T  F  K  E  K  K  K  R  S  I  C  R  L  F  L  *  G  G  G  G  H  V  *  *  Q  T  W  P  P  F  P  *  P  F  I  S  F  L  E  H  R  L  L  K  N  T  I  F  S  L  F  I  Y  P  F  S  S  S  F  L  Y  V  I  H  N  F  L  S  P  F  P  R  T  M  P  *  S  N  S  K  N  L  *  R  T  P  H  L  *  I  H  L  G  L  K  V  L  V  H  V  K  K  T  R  D  G  L  V  F  N  A  N  V  T  W  L  K  A  S  F  *  V  K  L  A  Y  Q  E  N  L  I  L  I  H  *  L  H  F  Q  A  S  E  F  L  I  S  R  I  I  H  F  Q  A  *  S  L  N  S  S  C  L  V  H  L  N  L  Y  I  *  M  E  T  N  S  Q  V  R  F  L  K  I  S  L  P  K  W  G  L  L  R  R  Y  G  L  H  E  T  N  F  P  E  Q  F  L  N  H  *  P  A  *  S  T  *  W  N  F  D  L  K  V  M  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66670" stop="67458"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTPIPPHKSLSKQQHPTPTPTTHDHSRVQNNQTNIKKIIKHLQRKEKEKHLQIVSIRGRWTCLVTNMAAVPLTLHLLPRASSPKKHHLFLIHISIFFLISLCNPQFSFSISEDDALIKFKKSLKNTTSLDSSWVKGTSPCEKNKRWARVQCERNVVEGLLLGEAGLSGELDIDPLIALPGLRVLDIANNSFSGLIPEFFLLGALKSIYIDGNQFSGEIPKDFFAKMGSLKKIWLARNKFSGAIPESLASLKYLMELRLESNAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="67747" PGL_stop="67944"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67747" e_stop="67944"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67747" e_stop="67944" e_length="198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67747" stop="67944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGGGAAAGAGAACCTTGATGAGGGGTTGCACATTGCAAGCTCGATTAGGAAGAGCATGAGTATTCATAGCAAAGGAGGTGATTCTATTCGTGGAGGATCAACACGAAGGGGAGGAGGATCACAAAGTGGTAAGGCTATGGGAGATCTCGTGTTAGTGAACAACGAAAATGGTACATTCGGATTGCCTGATTTGATG</gDNA_template>
            <first_frame> L  G  K  E  N  L  D  E  G  L  H  I  A  S  S  I  R  K  S  M  S  I  H  S  K  G  G  D  S  I  R  G  G  S  T  R  R  G  G  G  S  Q  S  G  K  A  M  G  D  L  V  L  V  N  N  E  N  G  T  F  G  L  P  D  L  M </first_frame>
            <second_frame>  L  G  K  R  T  L  M  R  G  C  T  L  Q  A  R  L  G  R  A  *  V  F  I  A  K  E  V  I  L  F  V  E  D  Q  H  E  G  E  E  D  H  K  V  V  R  L  W  E  I  S  C  *  *  T  T  K  M  V  H  S  D  C  L  I  *   </second_frame>
            <third_frame>   W  E  R  E  P  *  *  G  V  A  H  C  K  L  D  *  E  E  H  E  Y  S  *  Q  R  R  *  F  Y  S  W  R  I  N  T  K  G  R  R  I  T  K  W  *  G  Y  G  R  S  R  V  S  E  Q  R  K  W  Y  I  R  I  A  *  F  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67747" stop="67944"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGKENLDEGLHIASSIRKSMSIHSKGGDSIRGGSTRRGGGSQSGKAMGDLVLVNNENGTFGLPDLM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="69519" PGL_stop="68929"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69519" e_stop="68929"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="69519" e_stop="68929" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69519" stop="68929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATACAGTAAACTCTGTTTTGTTTGGCAAATGAAGTGAGTCGAGAGACGTTGTAGAGTTTAACTGAGATAAAACGGAATCAAATGAGGCTATAAGGATCGCTCTCTTCTGGCATGTAACGTAACTAAAGCTTTCACACGAAAATCTACTAACCTTTCGTGTTATGTTCATTATCATATTAAACTTATCTCTTCTATCCTCCTTAATGCTTCCTTCATATCAATCCTCTTATCCGGATCGCTTATAGTACAAGCAGCTCCTACATGAAGGAGTTTCACCATTTGTTCAACGGAATCTGTTGCAGACGCTATCTCTGGATCAATCAATTCGGATTCTCTTTGGTCAGCTATAGCTGATTGCACCCATTGAACAACATCCGTTCCACCTTTTTGATTGTTGAGATACTGAGAAGGAAATTTCCCTGTAAGGATTTCTAGTATTATGATTCCAAGACAATATATGTCACATTTTGGAGTGAGATGTTGATGTTGTGTGGCTTCTGGTGCTTTATACGCGAAAAGGGATTGAACTATTTGTGTGTTGTTGATCAGTGGATAGAAGGCGTAATCTGATAGAAGTGGCTCGTATTTTC</gDNA_template>
            <first_frame> D  T  V  N  S  V  L  F  G  K  *  S  E  S  R  D  V  V  E  F  N  *  D  K  T  E  S  N  E  A  I  R  I  A  L  F  W  H  V  T  *  L  K  L  S  H  E  N  L  L  T  F  R  V  M  F  I  I  I  L  N  L  S  L  L  S  S  L  M  L  P  S  Y  Q  S  S  Y  P  D  R  L  *  Y  K  Q  L  L  H  E  G  V  S  P  F  V  Q  R  N  L  L  Q  T  L  S  L  D  Q  S  I  R  I  L  F  G  Q  L  *  L  I  A  P  I  E  Q  H  P  F  H  L  F  D  C  *  D  T  E  K  E  I  S  L  *  G  F  L  V  L  *  F  Q  D  N  I  C  H  I  L  E  *  D  V  D  V  V  W  L  L  V  L  Y  T  R  K  G  I  E  L  F  V  C  C  *  S  V  D  R  R  R  N  L  I  E  V  A  R  I  F </first_frame>
            <second_frame>  I  Q  *  T  L  F  C  L  A  N  E  V  S  R  E  T  L  *  S  L  T  E  I  K  R  N  Q  M  R  L  *  G  S  L  S  S  G  M  *  R  N  *  S  F  H  T  K  I  Y  *  P  F  V  L  C  S  L  S  Y  *  T  Y  L  F  Y  P  P  *  C  F  L  H  I  N  P  L  I  R  I  A  Y  S  T  S  S  S  Y  M  K  E  F  H  H  L  F  N  G  I  C  C  R  R  Y  L  W  I  N  Q  F  G  F  S  L  V  S  Y  S  *  L  H  P  L  N  N  I  R  S  T  F  L  I  V  E  I  L  R  R  K  F  P  C  K  D  F  *  Y  Y  D  S  K  T  I  Y  V  T  F  W  S  E  M  L  M  L  C  G  F  W  C  F  I  R  E  K  G  L  N  Y  L  C  V  V  D  Q  W  I  E  G  V  I  *  *  K  W  L  V  F   </second_frame>
            <third_frame>   Y  S  K  L  C  F  V  W  Q  M  K  *  V  E  R  R  C  R  V  *  L  R  *  N  G  I  K  *  G  Y  K  D  R  S  L  L  A  C  N  V  T  K  A  F  T  R  K  S  T  N  L  S  C  Y  V  H  Y  H  I  K  L  I  S  S  I  L  L  N  A  S  F  I  S  I  L  L  S  G  S  L  I  V  Q  A  A  P  T  *  R  S  F  T  I  C  S  T  E  S  V  A  D  A  I  S  G  S  I  N  S  D  S  L  W  S  A  I  A  D  C  T  H  *  T  T  S  V  P  P  F  *  L  L  R  Y  *  E  G  N  F  P  V  R  I  S  S  I  M  I  P  R  Q  Y  M  S  H  F  G  V  R  C  *  C  C  V  A  S  G  A  L  Y  A  K  R  D  *  T  I  C  V  L  L  I  S  G  *  K  A  *  S  D  R  S  G  S  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0032P11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="70499" PGL_stop="73650"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70499" e_stop="70674"/>
            <exon e_start="72193" e_stop="72314"/>
            <exon e_start="73021" e_stop="73650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.590" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70499" e_stop="70674" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.964">
            <gDNA_intron_boundary i_start="70675" i_stop="72192" i_length="1518"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72193" e_stop="72314" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.590" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72315" i_stop="73020" i_length="706"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="73021" e_stop="73650" e_length="630"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70499" stop="70674"/>
              <exon start="72193" stop="72314"/>
              <exon start="73021" stop="73650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572921" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGGAGCCAAAAACTTAAAAAAAATAAAACAAAAATGGCATCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACAT : ATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACT : GTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAGATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGCCCACGAATCCCTTGTCTCTTTGCTAGCCTTCCCTGATCTGTGAGAGATATGTATTCAATGGCGGATCTAGAGCATAATCTACGGGTTTTACATAACCTAGTAGCTTTTTCGCGGACCTTGTAAAATATCTATATATATTTGATTCTTGTTTCCTGTTTCATCTTATTACTTGTGTGTTATGTGTTCAGAGTGGCAATAAAAGGCAATGAGTAGAGTTATTTTGTGTAAGTTCAGAATGCTTTGTTTTGCTTTCACTTCCGTTTATTCTTTTTCGGAATATTGGTTTTCCCTGAGTCGAGGTATATCAGAAACAGTCTCTCTCTACCTATGAGGTAAGGTAAAGTTT</gDNA_template>
            <first_frame> E  E  P  K  T  *  K  K  *  N  K  N  G  I  K  F  Y  R  A  Y  S  F  K  N  C  C  *  A  K  L  E  G  T  S  R  R  G  I  L  L  R  N  I  *  R  *  L  S  Y  S  L  Q  I  S  S  S  I  Y  I :   *  G  *  S  T  C  Q  Y  M  H  L  L  L  A  T  F  W  K  C  V  S  S  S  P  D  T  L  C  R  N  M  A  F  L  Y  G  R  A  N  H   : C  D  G  A  K  R  N  *  W  Q  G  E  V  N  L  R  W  T  R  S  P  R  R  *  S  I  R  A  V  Y  S  T  S  K  C  M  V  W  R  I  S  H  E  G  L  Q  H  I  F  R  Y  A  S  N  E  S  T  Y  K  R  W  *  E  T  F  L  S  S  W  M  H  L  C  S  S  I  P  V  *  R  F  *  I  S  K  T  F  *  S  C  L  A  F  S  C  P  R  I  P  C  L  F  A  S  L  P  *  S  V  R  D  M  Y  S  M  A  D  L  E  H  N  L  R  V  L  H  N  L  V  A  F  S  R  T  L  *  N  I  Y  I  Y  L  I  L  V  S  C  F  I  L  L  L  V  C  Y  V  F  R  V  A  I  K  G  N  E  *  S  Y  F  V  *  V  Q  N  A  L  F  C  F  H  F  R  L  F  F  F  G  I  L  V  F  P  E  S  R  Y  I  R  N  S  L  S  L  P  M  R  *  G  K  V  </first_frame>
            <second_frame>  R  S  Q  K  L  K  K  N  K  T  K  M  A  S  N  S  T  E  P  T  A  S  K  I  V  A  K  L  N  L  K  V  H  P  E  G  G  F  Y  S  E  T  F  R  D  N  S  V  I  L  S  R  S  H  L  P  S  T   : Y  K  V  D  R  P  V  S  T  C  I  Y  F  L  L  P  S  G  S  A  S  H  L  H  R  I  P  C  A  E  T  W  H  F  Y  M  G  E  P  I  T  :  V  M  E  L  N  E  T  D  G  K  V  K  L  T  C  V  G  P  D  P  L  V  D  D  Q  F  V  Q  Y  T  V  P  P  N  V  W  F  G  A  F  P  T  K  D  Y  N  I  S  S  D  M  Q  V  T  K  A  P  T  R  D  G  E  K  H  F  S  L  V  G  C  T  C  A  P  A  F  Q  F  E  D  F  E  L  A  K  R  S  D  L  V  S  R  F  P  A  H  E  S  L  V  S  L  L  A  F  P  D  L  *  E  I  C  I  Q  W  R  I  *  S  I  I  Y  G  F  Y  I  T  *  *  L  F  R  G  P  C  K  I  S  I  Y  I  *  F  L  F  P  V  S  S  Y  Y  L  C  V  M  C  S  E  W  Q  *  K  A  M  S  R  V  I  L  C  K  F  R  M  L  C  F  A  F  T  S  V  Y  S  F  S  E  Y  W  F  S  L  S  R  G  I  S  E  T  V  S  L  Y  L  *  G  K  V  K  F </second_frame>
            <third_frame>   G  A  K  N  L  K  K  I  K  Q  K  W  H  Q  I  L  Q  S  L  Q  L  Q  K  L  L  L  S  *  T  *  R  Y  I  Q  K  G  D  F  T  Q  K  H  L  E  I  T  Q  L  F  S  P  D  L  I  F  H  L  H  :  I  R  L  I  D  L  S  V  H  A  S  T  S  C  Y  L  L  E  V  R  L  I  F  T  G  Y  L  V  Q  K  H  G  I  F  I  W  E  S  Q  S  L :   *  W  S  *  T  K  L  M  A  R  *  S  *  L  A  L  D  P  I  P  S  *  M  I  N  S  C  S  I  Q  Y  L  Q  M  Y  G  L  A  H  F  P  R  R  I  T  T  Y  L  P  I  C  K  *  R  K  H  L  Q  E  M  V  R  N  I  S  L  *  L  D  A  L  V  L  Q  H  S  S  L  K  I  L  N  *  Q  N  V  L  I  L  S  R  V  F  L  P  T  N  P  L  S  L  C  *  P  S  L  I  C  E  R  Y  V  F  N  G  G  S  R  A  *  S  T  G  F  T  *  P  S  S  F  F  A  D  L  V  K  Y  L  Y  I  F  D  S  C  F  L  F  H  L  I  T  C  V  L  C  V  Q  S  G  N  K  R  Q  *  V  E  L  F  C  V  S  S  E  C  F  V  L  L  S  L  P  F  I  L  F  R  N  I  G  F  P  *  V  E  V  Y  Q  K  Q  S  L  S  T  Y  E  V  R  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70500" stop="70674"/>
                    <exon start="72193" stop="72314"/>
                    <exon start="73021" stop="73347"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSQKLKKNKTKMASNSTEPTASKIVAKLNLKVHPEGGFYSETFRDNSVILSRSHLPSTYKVDRPVSTCIYFLLPSGSASHLHRIPCAETWHFYMGEPITVMELNETDGKVKLTCVGPDPLVDDQFVQYTVPPNVWFGAFPTKDYNISSDMQVTKAPTRDGEKHFSLVGCTCAPAFQFEDFELAKRSDLVSRFPAHESLVSLLAFPDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="80592" PGL_stop="78165"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80592" e_stop="80559"/>
            <exon e_start="80440" e_stop="80255"/>
            <exon e_start="79588" e_stop="79514"/>
            <exon e_start="79360" e_stop="79256"/>
            <exon e_start="78836" e_stop="78165"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.971"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="0.989"/>
          <exon-intron don_prob="0.946" acc_prob="0.818" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.913" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="80592" e_stop="80559" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80558" i_stop="80441" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="80440" e_stop="80255" e_length="186"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="80254" i_stop="79589" i_length="666"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79588" e_stop="79514" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.818">
            <gDNA_intron_boundary i_start="79513" i_stop="79361" i_length="153"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79360" e_stop="79256" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.913">
            <gDNA_intron_boundary i_start="79255" i_stop="78837" i_length="419"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78836" e_stop="78165" e_length="672"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80592" stop="80559"/>
              <exon start="80440" stop="80255"/>
              <exon start="79588" stop="79514"/>
              <exon start="79360" stop="79256"/>
              <exon start="78836" stop="78165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567137" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACTCTCCTTACTGATGTGTCTGGCTATGATCGA : AAAATTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG : GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAG : ATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG : GTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCATCAGTGTGCAATTGCACTCACACAATGTCTAGGTGCCTTTGGATGTTTAGGTTGCTTCGCTTATTGTCAATACTGCTGTTGTGAAAATCATAAATAAAAAAAAAAGGGCAGCTCGATGGACTAAGCTCCCACTATACGCGGGGTTCGGAGAATGGACCGGACCACAAGAGTCTGTTGTGGAGATAATCAATGAGAAGAAAATTACAACTACTCCTACAACTTCAACTTTCTCCCCATGATTTTGTGTCAACTAATGACAGATTATAAAGTTAGTTGATAGTGAACATATTCATGGTTCTTTTTTTATCCTCTCCCCATATTTTTGTATAATTATTTTTACAATATTTTTCAATAGATACATATTTTTTTCTAAGAAGTTGATCATCAATTTGTAAATAATTGTATTCAATTGTTTTTGAATGTTTTTTATTGG</gDNA_template>
            <first_frame> Y  S  P  Y  *  C  V  W  L  *  S   : K  N  F  V  I  G  V  S  R  S  N  S  R  P  F  I  *  R  T  C  S  L  I  R  *  I  P  R  S  V  S  *  D  A  K  S  *  R  N  I  N  R  H  E  *  F  L  G  G  A  E  R  F  Q  V  Q  S  H  T  S  *  Q   : G  K  G  E  A  A  D  *  N  T  H  S  S  G  M  V  Y  T  K  *  G  S  *  K  K   : D  S  K  N  E  Y  T  R  R  R  H  L  *  V  Y  T  H  G  I  G  G  G  G  K  S  E  N  H  *  V  N  H  K  E  E   : G  S  L  *  *  *  E  D  R  R  T  L  N  T  E  D  N  I  T  T  I  P  R  L  R  F  W  *  S  H  C  Y  N  *  E  Y  S  S  W  S  H  R  *  R  G  R  S  R  D  Y  C  K  S  N  V  *  L  F  W  E  V  V  W  S  M  L  L  L  Q  L  L  H  Y  S  V  F  E  Y  E  S  S  V  C  N  C  T  H  T  M  S  R  C  L  W  M  F  R  L  L  R  L  L  S  I  L  L  L  *  K  S  *  I  K  K  K  G  Q  L  D  G  L  S  S  H  Y  T  R  G  S  E  N  G  P  D  H  K  S  L  L  W  R  *  S  M  R  R  K  L  Q  L  L  L  Q  L  Q  L  S  P  H  D  F  V  S  T  N  D  R  L  *  S  *  L  I  V  N  I  F  M  V  L  F  L  S  S  P  H  I  F  V  *  L  F  L  Q  Y  F  S  I  D  T  Y  F  F  L  R  S  *  S  S  I  C  K  *  L  Y  S  I  V  F  E  C  F  L  L  </first_frame>
            <second_frame>  T  L  L  T  D  V  S  G  Y  D  R  :  K  I  L  *  *  V  Y  P  A  Q  I  P  D  L  S  S  E  G  P  V  V  L  S  G  R  Y  Q  G  V  F  P  E  M  L  K  A  K  G  I  L  T  D  M  S  N  F  S  V  E  L  K  G  F  K  S  K  A  I  P  L  D  K  :  A  R  V  K  Q  Q  I  E  I  L  T  A  Q  A  W  F  T  Q  N  K  D  L  E  K  K  :  I  A  K  M  S  I  Q  D  A  V  I  S  E  Y  T  R  M  A  L  V  E  A  E  K  V  K  I  I  K  S  T  T  K  R  K  :  V  H  C  D  D  E  K  I  E  E  R  L  I  Q  K  T  I  L  L  Q  Y  P  G  F  G  F  G  N  L  T  A  T  I  E  N  I  P  P  G  A  I  D  K  E  D  E  A  E  I  I  A  K  A  T  S  N  C  F  G  K  L  C  G  L  C  C  C  C  S  C  C  I  T  A  C  S  N  M  N  H  Q  C  A  I  A  L  T  Q  C  L  G  A  F  G  C  L  G  C  F  A  Y  C  Q  Y  C  C  C  E  N  H  K  *  K  K  K  G  S  S  M  D  *  A  P  T  I  R  G  V  R  R  M  D  R  T  T  R  V  C  C  G  D  N  Q  *  E  E  N  Y  N  Y  S  Y  N  F  N  F  L  P  M  I  L  C  Q  L  M  T  D  Y  K  V  S  *  *  *  T  Y  S  W  F  F  F  Y  P  L  P  I  F  L  Y  N  Y  F  Y  N  I  F  Q  *  I  H  I  F  F  *  E  V  D  H  Q  F  V  N  N  C  I  Q  L  F  L  N  V  F  Y  W </second_frame>
            <third_frame>   L  S  L  L  M  C  L  A  M  I  E :   K  F  C  D  R  C  I  P  L  K  F  Q  T  F  H  L  K  D  L  *  S  Y  Q  V  D  T  K  E  C  F  L  R  C  *  K  L  K  E  Y  *  Q  T  *  V  I  S  R  W  S  *  K  V  S  S  P  K  P  Y  L  L  T  R :   Q  G  *  S  S  R  L  K  Y  S  Q  L  R  H  G  L  H  K  I  R  I  L  K  K  R :   *  Q  K  *  V  Y  K  T  P  S  S  L  S  I  H  A  W  H  W  W  R  R  K  K  *  K  S  L  S  Q  P  Q  R  G  R :   F  I  V  M  M  R  R  *  K  N  A  *  Y  R  R  Q  Y  Y  Y  N  T  Q  A  S  V  L  V  I  S  L  L  Q  L  R  I  F  L  L  E  P  S  I  K  R  T  K  Q  R  L  L  Q  K  Q  R  L  I  V  L  G  S  C  V  V  Y  A  A  V  A  V  A  A  L  Q  R  V  R  I  *  I  I  S  V  Q  L  H  S  H  N  V  *  V  P  L  D  V  *  V  A  S  L  I  V  N  T  A  V  V  K  I  I  N  K  K  K  R  A  A  R  W  T  K  L  P  L  Y  A  G  F  G  E  W  T  G  P  Q  E  S  V  V  E  I  I  N  E  K  K  I  T  T  T  P  T  T  S  T  F  S  P  *  F  C  V  N  *  *  Q  I  I  K  L  V  D  S  E  H  I  H  G  S  F  F  I  L  S  P  Y  F  C  I  I  I  F  T  I  F  F  N  R  Y  I  F  F  S  K  K  L  I  I  N  L  *  I  I  V  F  N  C  F  *  M  F  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80425" stop="80255"/>
                    <exon start="79588" stop="79514"/>
                    <exon start="79360" stop="79256"/>
                    <exon start="78836" stop="78501"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYPAQIPDLSSEGPVVLSGRYQGVFPEMLKAKGILTDMSNFSVELKGFKSKAIPLDKARVKQQIEILTAQAWFTQNKDLEKKIAKMSIQDAVISEYTRMALVEAEKVKIIKSTTKRKVHCDDEKIEERLIQKTILLQYPGFGFGNLTATIENIPPGAIDKEDEAEIIAKATSNCFGKLCGLCCCCSCCITACSNMNHQCAIALTQCLGAFGCLGCFAYCQYCCCENHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="85202" PGL_stop="84489"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85202" e_stop="84489"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="85202" e_stop="84489" e_length="714"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85202" stop="84489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598734" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCATAAGATTTTATTGTATATGGCGATTTGTTTATTCGTTCAACTTTATTAACTTTTATGTAATAGTGTCCTCTAATTTTTTTTTTCTGAGTCAAAAATTTCAAACTCAAGTGAGAAATTTGTATGGCAGCCATTGCTAGCAAACTTGCTAACCGTGGCAAAAACGTGTTCACTTCCGATACTTTCTCCGGTAACAAAGTTTATATGATAACAATATCACACCATTAACGTCGGCCGGCGATCAGAAAAGTTTGCTCCGAGAAGAAGAGGAAGAAACGAAATCAACATTTCGGAAAATCCTCTTCTTCTCCATTATATATATATAAATATTTTTTTTGATTTTTTTTCTTTTATTATTGTACGGATTTACGTACAATTTTGATTTGACAATGGCGGATCAGGAGGAATTTGTGAAATCGGTGGAAGACGGGTTGAGGTTATCGAAACAGATATATTTTGGGAAGGATCGTGCGGTTGCGCCGCCGAAGCAGATGACGGCGATGGAGAAAACGGCGGAATCGTATTTTCCGACTTCGCCTATGATGTATGCTGTGATTGAGAATCCTGCGTTTGTTGATAACCCGGATATACCGAGTTATCAACCTCATGTGCATGGAAGGTGTGATCCTCCTGCTTTGATTCCGTTACAGATGAACGGAGTTTCGATTGCGGCGGATTGTTATTTCGATACGGCGTTTATCACTGTTACGGGT</gDNA_template>
            <first_frame> S  I  R  F  Y  C  I  W  R  F  V  Y  S  F  N  F  I  N  F  Y  V  I  V  S  S  N  F  F  F  L  S  Q  K  F  Q  T  Q  V  R  N  L  Y  G  S  H  C  *  Q  T  C  *  P  W  Q  K  R  V  H  F  R  Y  F  L  R  *  Q  S  L  Y  D  N  N  I  T  P  L  T  S  A  G  D  Q  K  S  L  L  R  E  E  E  E  E  T  K  S  T  F  R  K  I  L  F  F  S  I  I  Y  I  *  I  F  F  L  I  F  F  L  L  L  L  Y  G  F  T  Y  N  F  D  L  T  M  A  D  Q  E  E  F  V  K  S  V  E  D  G  L  R  L  S  K  Q  I  Y  F  G  K  D  R  A  V  A  P  P  K  Q  M  T  A  M  E  K  T  A  E  S  Y  F  P  T  S  P  M  M  Y  A  V  I  E  N  P  A  F  V  D  N  P  D  I  P  S  Y  Q  P  H  V  H  G  R  C  D  P  P  A  L  I  P  L  Q  M  N  G  V  S  I  A  A  D  C  Y  F  D  T  A  F  I  T  V  T  G </first_frame>
            <second_frame>  A  *  D  F  I  V  Y  G  D  L  F  I  R  S  T  L  L  T  F  M  *  *  C  P  L  I  F  F  F  *  V  K  N  F  K  L  K  *  E  I  C  M  A  A  I  A  S  K  L  A  N  R  G  K  N  V  F  T  S  D  T  F  S  G  N  K  V  Y  M  I  T  I  S  H  H  *  R  R  P  A  I  R  K  V  C  S  E  K  K  R  K  K  R  N  Q  H  F  G  K  S  S  S  S  P  L  Y  I  Y  K  Y  F  F  *  F  F  F  F  Y  Y  C  T  D  L  R  T  I  L  I  *  Q  W  R  I  R  R  N  L  *  N  R  W  K  T  G  *  G  Y  R  N  R  Y  I  L  G  R  I  V  R  L  R  R  R  S  R  *  R  R  W  R  K  R  R  N  R  I  F  R  L  R  L  *  C  M  L  *  L  R  I  L  R  L  L  I  T  R  I  Y  R  V  I  N  L  M  C  M  E  G  V  I  L  L  L  *  F  R  Y  R  *  T  E  F  R  L  R  R  I  V  I  S  I  R  R  L  S  L  L  R   </second_frame>
            <third_frame>   H  K  I  L  L  Y  M  A  I  C  L  F  V  Q  L  Y  *  L  L  C  N  S  V  L  *  F  F  F  S  E  S  K  I  S  N  S  S  E  K  F  V  W  Q  P  L  L  A  N  L  L  T  V  A  K  T  C  S  L  P  I  L  S  P  V  T  K  F  I  *  *  Q  Y  H  T  I  N  V  G  R  R  S  E  K  F  A  P  R  R  R  G  R  N  E  I  N  I  S  E  N  P  L  L  L  H  Y  I  Y  I  N  I  F  F  D  F  F  S  F  I  I  V  R  I  Y  V  Q  F  *  F  D  N  G  G  S  G  G  I  C  E  I  G  G  R  R  V  E  V  I  E  T  D  I  F  W  E  G  S  C  G  C  A  A  E  A  D  D  G  D  G  E  N  G  G  I  V  F  S  D  F  A  Y  D  V  C  C  D  *  E  S  C  V  C  *  *  P  G  Y  T  E  L  S  T  S  C  A  W  K  V  *  S  S  C  F  D  S  V  T  D  E  R  S  F  D  C  G  G  L  L  F  R  Y  G  V  Y  H  C  Y  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84875" stop="84489"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFFLIFFLLLLYGFTYNFDLTMADQEEFVKSVEDGLRLSKQIYFGKDRAVAPPKQMTAMEKTAESYFPTSPMMYAVIENPAFVDNPDIPSYQPHVHGRCDPPALIPLQMNGVSIAADCYFDTAFITVTG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="91190" PGL_stop="86737"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91190" e_stop="91050"/>
            <exon e_start="89426" e_stop="89208"/>
            <exon e_start="88836" e_stop="88678"/>
            <exon e_start="88439" e_stop="88290"/>
            <exon e_start="88124" e_stop="87929"/>
            <exon e_start="87517" e_stop="86737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.790" e_score="0.972"/>
          <exon-intron don_prob="0.171" acc_prob="0.619" e_score="1.000"/>
          <exon-intron don_prob="0.793" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.938" e_score="0.960"/>
          <exon-intron don_prob="0.943" acc_prob="0.894" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="91190" e_stop="91050" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.790">
            <gDNA_intron_boundary i_start="91049" i_stop="89427" i_length="1623"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89426" e_stop="89208" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.171" acc_prob="0.619">
            <gDNA_intron_boundary i_start="89207" i_stop="88837" i_length="371"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88836" e_stop="88678" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.793" acc_prob="0.993">
            <gDNA_intron_boundary i_start="88677" i_stop="88440" i_length="238"/>
          </intron>
          <exon e_serial="4" e_score="0.960">
            <gDNA_exon_boundary e_start="88439" e_stop="88290" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.938">
            <gDNA_intron_boundary i_start="88289" i_stop="88125" i_length="165"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88124" e_stop="87929" e_length="196"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.894">
            <gDNA_intron_boundary i_start="87928" i_stop="87518" i_length="411"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="87517" e_stop="86737" e_length="781"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91190" stop="91050"/>
              <exon start="89426" stop="89208"/>
              <exon start="88836" stop="88678"/>
              <exon start="88439" stop="88290"/>
              <exon start="88124" stop="87971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88348" stop="88290"/>
              <exon start="88124" stop="87929"/>
              <exon start="87517" stop="86737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTGAATTGATTCTTAACTTCAGATGTTTTTCAACTCAAATTCATCATTCTTACACAATTTAATCTATTGATTACCTTCATAAATCATTTCTACATCATCAATCCTACGTTTTCCAGGTTCAAATTCATCCAATTTTTAG : ATGTTACTCTGAAGCAAAAATAATGTCCATTGTGGTGGAATGAGTTCAAGTCCAAACATCCCTAAGCTTCAAGGATGAAGGGAGGTTTGAAGGTGTCACAGATCTCTCTCATCCTGATCGGATTCGTGTGTGCTTCTGTTCTTCTTTTGGCATATGTGAAGAGCCTACTTCTTTCTTCTTCAGTACTACCTCAGAATCATGTCTTGCAGCTTTCTCCAG : ATCTTAGAGTGAAAGATGAAGAAGCTTTGGGAGAAGGAAGCGGATCGGAGCAATCACAAGACAGTGTTAACTTTGAATCTGAAAAATATCCTACTTATGCAAACTCTTCACCGGTGATTAAGGTGACTGAAGAGTTGATTACTCATGAAGAAAGAGGAG : GTATTGCTCCGAATATCACTGAAAAAGGAGATTCAAAAGATGTTTCAGACAAAAAAACTGGTTTAATAGAGCAGGAAATTGACGTTTCCACTGCTGTGAGTTCTGGGGGTGAACATAGTGACAATTTTACAGCAACCCCGGAAAGACAAG : ATTGCAACTTTGCTAAAGGCAGATGGGTCATAGATGATAGCCGACCTTTATATTCTGGATTTGGCTGTAAGCAATGGTTGTCATCTATGTGGGCTTGTCGCTTGACACAACGTACAGATTTTGAATATGAAAAGTTACGTTGGCGACCCAAAAATTGTGAGATGGAAGATTTTACTGGTGTTAAATTTCTGAAAAG : GATGCAAAACAAAACTCTGGCGTTTATCGGGGATTCGCTTGGTAGACAGCAATTTCAGTCACTTATGTGTATGATTAGTGGTGGAAAAGATAGACCTAATGTTCTTGATGTGGGGCATGAATATGGTCTAGTGCAATCTCGTGGTTCTGGTCGACCTGATGGATGGGCTTTTCGATTTCCAGACACCAAAACAACTATTCTTTATTATTGGTCTGCTAGTCTCTGTGACTTGACACCTATAAATCCATCTGATCCTGCTACTGATTACGCCATGCACCTGGACCGTCCTCCAGCATTTTTGAGTCATTTCCTTCCAAGGTTCGATGTCCTTGTTCTAAACACAGGACACCATTGGAATAGAGGAAAGCTTAAGGCCAATCGATGGGTCATGTATGTAGGTGGTGTCCCTAATACAAACCGGAAGATTGTGACTATAGGTGGTGCCAAGAATTTCACAATCCACAGTATTGTCAATTGGGTGAACTCACAGCTGCCAAAATACCCTCATGTAAAAGCATTCTATCGGACTATATCCCCCAGACATTTCTTTAACGGAGATTGGAACACAGGAGGTACATGTGACAACACTACACCACTTTCCGAAGGGAAGGAGGTTTTACAAGACGAATCAAGTGACTATGATGCAGCACGTGCTGTTAGAGGAACAGACGTTAAGCTTTTGGACATCACTGCTTTATCCCAGCTGAGAGATGAAGGTCATATATCTCGATACAGCATCAAAGCAACACCAGGTGTCCAGGATTGTCTACATTGGTGCTTA</gDNA_template>
            <first_frame> S  *  I  D  S  *  L  Q  M  F  F  N  S  N  S  S  F  L  H  N  L  I  Y  *  L  P  S  *  I  I  S  T  S  S  I  L  R  F  P  G  S  N  S  S  N  F  *  :  M  L  L  *  S  K  N  N  V  H  C  G  G  M  S  S  S  P  N  I  P  K  L  Q  G  *  R  E  V  *  R  C  H  R  S  L  S  S  *  S  D  S  C  V  L  L  F  F  F  W  H  M  *  R  A  Y  F  F  L  L  Q  Y  Y  L  R  I  M  S  C  S  F  L  Q  :  I  L  E  *  K  M  K  K  L  W  E  K  E  A  D  R  S  N  H  K  T  V  L  T  L  N  L  K  N  I  L  L  M  Q  T  L  H  R  *  L  R  *  L  K  S  *  L  L  M  K  K  E  E  :  V  L  L  R  I  S  L  K  K  E  I  Q  K  M  F  Q  T  K  K  L  V  *  *  S  R  K  L  T  F  P  L  L  *  V  L  G  V  N  I  V  T  I  L  Q  Q  P  R  K  D  K  :  I  A  T  L  L  K  A  D  G  S  *  M  I  A  D  L  Y  I  L  D  L  A  V  S  N  G  C  H  L  C  G  L  V  A  *  H  N  V  Q  I  L  N  M  K  S  Y  V  G  D  P  K  I  V  R  W  K  I  L  L  V  L  N  F  *  K   : G  C  K  T  K  L  W  R  L  S  G  I  R  L  V  D  S  N  F  S  H  L  C  V  *  L  V  V  E  K  I  D  L  M  F  L  M  W  G  M  N  M  V  *  C  N  L  V  V  L  V  D  L  M  D  G  L  F  D  F  Q  T  P  K  Q  L  F  F  I  I  G  L  L  V  S  V  T  *  H  L  *  I  H  L  I  L  L  L  I  T  P  C  T  W  T  V  L  Q  H  F  *  V  I  S  F  Q  G  S  M  S  L  F  *  T  Q  D  T  I  G  I  E  E  S  L  R  P  I  D  G  S  C  M  *  V  V  S  L  I  Q  T  G  R  L  *  L  *  V  V  P  R  I  S  Q  S  T  V  L  S  I  G  *  T  H  S  C  Q  N  T  L  M  *  K  H  S  I  G  L  Y  P  P  D  I  S  L  T  E  I  G  T  Q  E  V  H  V  T  T  L  H  H  F  P  K  G  R  R  F  Y  K  T  N  Q  V  T  M  M  Q  H  V  L  L  E  E  Q  T  L  S  F  W  T  S  L  L  Y  P  S  *  E  M  K  V  I  Y  L  D  T  A  S  K  Q  H  Q  V  S  R  I  V  Y  I  G  A   </first_frame>
            <second_frame>  L  E  L  I  L  N  F  R  C  F  S  T  Q  I  H  H  S  Y  T  I  *  S  I  D  Y  L  H  K  S  F  L  H  H  Q  S  Y  V  F  Q  V  Q  I  H  P  I  F  R :   C  Y  S  E  A  K  I  M  S  I  V  V  E  *  V  Q  V  Q  T  S  L  S  F  K  D  E  G  R  F  E  G  V  T  D  L  S  H  P  D  R  I  R  V  C  F  C  S  S  F  G  I  C  E  E  P  T  S  F  F  F  S  T  T  S  E  S  C  L  A  A  F  S  R :   S  *  S  E  R  *  R  S  F  G  R  R  K  R  I  G  A  I  T  R  Q  C  *  L  *  I  *  K  I  S  Y  L  C  K  L  F  T  G  D  *  G  D  *  R  V  D  Y  S  *  R  K  R  R :   Y  C  S  E  Y  H  *  K  R  R  F  K  R  C  F  R  Q  K  N  W  F  N  R  A  G  N  *  R  F  H  C  C  E  F  W  G  *  T  *  *  Q  F  Y  S  N  P  G  K  T  R :   L  Q  L  C  *  R  Q  M  G  H  R  *  *  P  T  F  I  F  W  I  W  L  *  A  M  V  V  I  Y  V  G  L  S  L  D  T  T  Y  R  F  *  I  *  K  V  T  L  A  T  Q  K  L  *  D  G  R  F  Y  W  C  *  I  S  E  K  :  D  A  K  Q  N  S  G  V  Y  R  G  F  A  W  *  T  A  I  S  V  T  Y  V  Y  D  *  W  W  K  R  *  T  *  C  S  *  C  G  A  *  I  W  S  S  A  I  S  W  F  W  S  T  *  W  M  G  F  S  I  S  R  H  Q  N  N  Y  S  L  L  L  V  C  *  S  L  *  L  D  T  Y  K  S  I  *  S  C  Y  *  L  R  H  A  P  G  P  S  S  S  I  F  E  S  F  P  S  K  V  R  C  P  C  S  K  H  R  T  P  L  E  *  R  K  A  *  G  Q  S  M  G  H  V  C  R  W  C  P  *  Y  K  P  E  D  C  D  Y  R  W  C  Q  E  F  H  N  P  Q  Y  C  Q  L  G  E  L  T  A  A  K  I  P  S  C  K  S  I  L  S  D  Y  I  P  Q  T  F  L  *  R  R  L  E  H  R  R  Y  M  *  Q  H  Y  T  T  F  R  R  E  G  G  F  T  R  R  I  K  *  L  *  C  S  T  C  C  *  R  N  R  R  *  A  F  G  H  H  C  F  I  P  A  E  R  *  R  S  Y  I  S  I  Q  H  Q  S  N  T  R  C  P  G  L  S  T  L  V  L  </second_frame>
            <third_frame>   L  N  *  F  L  T  S  D  V  F  Q  L  K  F  I  I  L  T  Q  F  N  L  L  I  T  F  I  N  H  F  Y  I  I  N  P  T  F  S  R  F  K  F  I  Q  F  L   : D  V  T  L  K  Q  K  *  C  P  L  W  W  N  E  F  K  S  K  H  P  *  A  S  R  M  K  G  G  L  K  V  S  Q  I  S  L  I  L  I  G  F  V  C  A  S  V  L  L  L  A  Y  V  K  S  L  L  L  S  S  S  V  L  P  Q  N  H  V  L  Q  L  S  P   : D  L  R  V  K  D  E  E  A  L  G  E  G  S  G  S  E  Q  S  Q  D  S  V  N  F  E  S  E  K  Y  P  T  Y  A  N  S  S  P  V  I  K  V  T  E  E  L  I  T  H  E  E  R  G   : G  I  A  P  N  I  T  E  K  G  D  S  K  D  V  S  D  K  K  T  G  L  I  E  Q  E  I  D  V  S  T  A  V  S  S  G  G  E  H  S  D  N  F  T  A  T  P  E  R  Q   : D  C  N  F  A  K  G  R  W  V  I  D  D  S  R  P  L  Y  S  G  F  G  C  K  Q  W  L  S  S  M  W  A  C  R  L  T  Q  R  T  D  F  E  Y  E  K  L  R  W  R  P  K  N  C  E  M  E  D  F  T  G  V  K  F  L  K  R :   M  Q  N  K  T  L  A  F  I  G  D  S  L  G  R  Q  Q  F  Q  S  L  M  C  M  I  S  G  G  K  D  R  P  N  V  L  D  V  G  H  E  Y  G  L  V  Q  S  R  G  S  G  R  P  D  G  W  A  F  R  F  P  D  T  K  T  T  I  L  Y  Y  W  S  A  S  L  C  D  L  T  P  I  N  P  S  D  P  A  T  D  Y  A  M  H  L  D  R  P  P  A  F  L  S  H  F  L  P  R  F  D  V  L  V  L  N  T  G  H  H  W  N  R  G  K  L  K  A  N  R  W  V  M  Y  V  G  G  V  P  N  T  N  R  K  I  V  T  I  G  G  A  K  N  F  T  I  H  S  I  V  N  W  V  N  S  Q  L  P  K  Y  P  H  V  K  A  F  Y  R  T  I  S  P  R  H  F  F  N  G  D  W  N  T  G  G  T  C  D  N  T  T  P  L  S  E  G  K  E  V  L  Q  D  E  S  S  D  Y  D  A  A  R  A  V  R  G  T  D  V  K  L  L  D  I  T  A  L  S  Q  L  R  D  E  G  H  I  S  R  Y  S  I  K  A  T  P  G  V  Q  D  C  L  H  W  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89361" stop="89208"/>
                    <exon start="88836" stop="88678"/>
                    <exon start="88439" stop="88290"/>
                    <exon start="88124" stop="87929"/>
                    <exon start="87517" stop="86737"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1440</number_coding_nucleotides>
                  <number_encoded_amino_acids>480</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASRMKGGLKVSQISLILIGFVCASVLLLAYVKSLLLSSSVLPQNHVLQLSPDLRVKDEEALGEGSGSEQSQDSVNFESEKYPTYANSSPVIKVTEELITHEERGGIAPNITEKGDSKDVSDKKTGLIEQEIDVSTAVSSGGEHSDNFTATPERQDCNFAKGRWVIDDSRPLYSGFGCKQWLSSMWACRLTQRTDFEYEKLRWRPKNCEMEDFTGVKFLKRMQNKTLAFIGDSLGRQQFQSLMCMISGGKDRPNVLDVGHEYGLVQSRGSGRPDGWAFRFPDTKTTILYYWSASLCDLTPINPSDPATDYAMHLDRPPAFLSHFLPRFDVLVLNTGHHWNRGKLKANRWVMYVGGVPNTNRKIVTIGGAKNFTIHSIVNWVNSQLPKYPHVKAFYRTISPRHFFNGDWNTGGTCDNTTPLSEGKEVLQDESSDYDAARAVRGTDVKLLDITALSQLRDEGHISRYSIKATPGVQDCLHWCL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="91174" e_stop="91050"/>
            <exon e_start="90213" e_stop="89586"/>
            <exon e_start="89426" e_stop="89401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.790" e_score="0.989"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91174" e_stop="91050" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.863">
            <gDNA_intron_boundary i_start="91049" i_stop="90214" i_length="836"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="90213" e_stop="89586" e_length="628"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.790">
            <gDNA_intron_boundary i_start="89585" i_stop="89427" i_length="159"/>
          </intron>
          <exon e_serial="3" e_score="0.923">
            <gDNA_exon_boundary e_start="89426" e_stop="89401" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91174" stop="91050"/>
              <exon start="90213" stop="89586"/>
              <exon start="89426" stop="89401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596853" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTTCAGATGTTTTTCAACTCAAATTCATCATTCTTACACAATTTAATCTATTGATTACCTTCATAAATCATTTCTACATCATCAATCCTACGTTTTCCAGGTTCAAATTCATCCAATTTTTAG : TCTTAGTTGATGTGTGTGTTGGATACTCCAAAAGTAGTGCATTTTGGAGAATCCGATACGGGTGCGACAAGAATTTGGAGAGTCCCAGCAACATAGTTTGCAGTAGTATTAATGTTACTTTAATTATTAGGATTAGTTCGCCAGGTAGAAAATAATAGCGAGCAGGATGGATCTGCTTCAAAGATAAAATTTGGCCCAATCTTTAGTTGAAGGTGGCCAGAAAGAAGATGCAATGCATTTTTGTTATCAGTCCATGGTTTTGCTGGAAACTATCTATTATTGCAGGACATTACTGAACCGTGAACTCTTTAGAGTTGGAGTTGGACTGCGTACAGAAATATATTGATTGGGATAACGGGTGAAGGCAGGATGTTGTTTTTTCATAAGATAAAGTGGAGGAATGAAAAAGGGTCTGTTAATAGGGATGGACTTTAATTATTGGATGATTCTTTGTTGTGCTTGGACTCAATTGATTAAAATTGTATAATTTGATCAGCATCTTATGCTCTCACATCTAGAGAAGGAAGCTTATGGAAGACAGCTATTTTTGATAGAACAGGAGTACTATTTGATGCCGCTTCTTAAAGATGCCTACTTCCTGATTTGAGCGCTTGTAGTATTTTATAAA : ATGTTACTCTGAAGCAAAAATAATGT</gDNA_template>
            <first_frame> N  F  R  C  F  S  T  Q  I  H  H  S  Y  T  I  *  S  I  D  Y  L  H  K  S  F  L  H  H  Q  S  Y  V  F  Q  V  Q  I  H  P  I  F  S :   L  S  *  C  V  C  W  I  L  Q  K  *  C  I  L  E  N  P  I  R  V  R  Q  E  F  G  E  S  Q  Q  H  S  L  Q  *  Y  *  C  Y  F  N  Y  *  D  *  F  A  R  *  K  I  I  A  S  R  M  D  L  L  Q  R  *  N  L  A  Q  S  L  V  E  G  G  Q  K  E  D  A  M  H  F  C  Y  Q  S  M  V  L  L  E  T  I  Y  Y  C  R  T  L  L  N  R  E  L  F  R  V  G  V  G  L  R  T  E  I  Y  *  L  G  *  R  V  K  A  G  C  C  F  F  I  R  *  S  G  G  M  K  K  G  L  L  I  G  M  D  F  N  Y  W  M  I  L  C  C  A  W  T  Q  L  I  K  I  V  *  F  D  Q  H  L  M  L  S  H  L  E  K  E  A  Y  G  R  Q  L  F  L  I  E  Q  E  Y  Y  L  M  P  L  L  K  D  A  Y  F  L  I  *  A  L  V  V  F  Y  K  :  M  L  L  *  S  K  N  N   </first_frame>
            <second_frame>  T  S  D  V  F  Q  L  K  F  I  I  L  T  Q  F  N  L  L  I  T  F  I  N  H  F  Y  I  I  N  P  T  F  S  R  F  K  F  I  Q  F  L   : V  L  V  D  V  C  V  G  Y  S  K  S  S  A  F  W  R  I  R  Y  G  C  D  K  N  L  E  S  P  S  N  I  V  C  S  S  I  N  V  T  L  I  I  R  I  S  S  P  G  R  K  *  *  R  A  G  W  I  C  F  K  D  K  I  W  P  N  L  *  L  K  V  A  R  K  K  M  Q  C  I  F  V  I  S  P  W  F  C  W  K  L  S  I  I  A  G  H  Y  *  T  V  N  S  L  E  L  E  L  D  C  V  Q  K  Y  I  D  W  D  N  G  *  R  Q  D  V  V  F  S  *  D  K  V  E  E  *  K  R  V  C  *  *  G  W  T  L  I  I  G  *  F  F  V  V  L  G  L  N  *  L  K  L  Y  N  L  I  S  I  L  C  S  H  I  *  R  R  K  L  M  E  D  S  Y  F  *  *  N  R  S  T  I  *  C  R  F  L  K  M  P  T  S  *  F  E  R  L  *  Y  F  I  K :   C  Y  S  E  A  K  I  M  </second_frame>
            <third_frame>   L  Q  M  F  F  N  S  N  S  S  F  L  H  N  L  I  Y  *  L  P  S  *  I  I  S  T  S  S  I  L  R  F  P  G  S  N  S  S  N  F  *  :  S  *  L  M  C  V  L  D  T  P  K  V  V  H  F  G  E  S  D  T  G  A  T  R  I  W  R  V  P  A  T  *  F  A  V  V  L  M  L  L  *  L  L  G  L  V  R  Q  V  E  N  N  S  E  Q  D  G  S  A  S  K  I  K  F  G  P  I  F  S  *  R  W  P  E  R  R  C  N  A  F  L  L  S  V  H  G  F  A  G  N  Y  L  L  L  Q  D  I  T  E  P  *  T  L  *  S  W  S  W  T  A  Y  R  N  I  L  I  G  I  T  G  E  G  R  M  L  F  F  H  K  I  K  W  R  N  E  K  G  S  V  N  R  D  G  L  *  L  L  D  D  S  L  L  C  L  D  S  I  D  *  N  C  I  I  *  S  A  S  Y  A  L  T  S  R  E  G  S  L  W  K  T  A  I  F  D  R  T  G  V  L  F  D  A  A  S  *  R  C  L  L  P  D  L  S  A  C  S  I  L  *   : N  V  T  L  K  Q  K  *  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91173" stop="91050"/>
                    <exon start="90213" stop="90059"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSDVFQLKFIILTQFNLLITFINHFYIINPTFSRFKFIQFLVLVDVCVGYSKSSAFWRIRYGCDKNLESPSNIVCSSINVTLIIRISSPGRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="93803" PGL_stop="98243"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93803" e_stop="93956"/>
            <exon e_start="94104" e_stop="94198"/>
            <exon e_start="94868" e_stop="94949"/>
            <exon e_start="95415" e_stop="95511"/>
            <exon e_start="95883" e_stop="95941"/>
            <exon e_start="96074" e_stop="96156"/>
            <exon e_start="96910" e_stop="97005"/>
            <exon e_start="97490" e_stop="97549"/>
            <exon e_start="97893" e_stop="98243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.968"/>
          <exon-intron don_prob="0.958" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.169" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.734" e_score="1.000"/>
          <exon-intron don_prob="0.712" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.816" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="93803" e_stop="93956" e_length="154"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94104" e_stop="94198" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.964">
            <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94868" e_stop="94949" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.169" acc_prob="0.921">
            <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95415" e_stop="95511" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.891" acc_prob="0.734">
            <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95883" e_stop="95941" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.712" acc_prob="0.992">
            <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="96074" e_stop="96156" e_length="83"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="96910" e_stop="97005" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.904" acc_prob="0.816">
            <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="97490" e_stop="97549" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="97893" e_stop="98243" e_length="351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93803" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="98243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93842" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATACTGAAAAAAACCCTAAATCAGTTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG : AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT : GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG : CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG : GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG : TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG : GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG : ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG : GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCTATCTACGATCTTTTGTACTTTGATTATCATACTATTTTATCATTGTTTTTGCCCCCTT</gDNA_template>
            <first_frame> Y  T  E  K  N  P  K  S  V  R  Q  K  F  S  D  R  T  E  K  I  K  P  *  N  R  T  M  S  R  G  S  G  G  G  Y  D  R  H  I  T  I  F  S  P  E  G  R  L  F  Q  V   : E  Y  A  F  K  A  V  K  A  A  G  I  T  S  I  G  V  R  G  K  D  S  V  C  V  V  T  Q  K  K  V  P  :  D  K  L  L  D  Q  T  S  V  S  H  L  F  P  I  T  K  Y  L  G  L  L  A  T  G  M  T   : A  D  A  R  T  L  V  Q  Q  A  R  N  E  A  A  E  F  R  F  K  Y  G  Y  E  M  P  A  D  V  L  S  K  W :   I  A  D  K  S  Q  V  Y  T  Q  H  A  Y  M  R  P  L  G  V   : V  A  M  I  L  G  I  D  E  E  K  G  P  Q  L  F  K  C  D  P  A  G  H  F  F  G  H  K  :  A  T  S  A  G  S  K  E  Q  E  A  I  N  F  L  E  K  K  M  K  N  N  P  A  F  S  Y  E  E  T  V  Q  :  T  T  I  S  A  L  Q  S  V  L  Q  E  D  F  K  A  S  E  I  E  :  V  G  V  V  R  K  E  D  P  V  F  R  V  L  T  T  E  E  I  D  E  H  L  T  A  I  S  E  R  D  *  L  A  T  *  Y  T  V  R  F  L  L  E  M  Y  V  L  L  S  R  L  A  K  E  I  P  F  D  C  *  L  L  S  I  L  L  H  M  L  I  N  E  F  L  F  V  E  C  N  I  S  W  D  L  L  S  F  N  K  T  F  E  S  F  Y  H  Y  L  S  T  I  F  C  T  L  I  I  I  L  F  Y  H  C  F  C  P  L </first_frame>
            <second_frame>  I  L  K  K  T  L  N  Q  F  D  K  N  F  Q  I  E  L  R  K  S  N  R  R  I  E  Q  *  V  E  E  V  E  A  D  T  I  V  T  L  R  S  S  H  R  K  V  V  S  F  K  S  :  N  M  L  L  R  L  *  R  Q  L  E  S  H  L  L  V  S  V  E  R  T  L  F  V  L  L  L  R  R  K  S  L :   T  S  Y  W  I  R  P  V  Y  P  I  C  S  Q  L  P  S  I  L  D  Y  W  L  L  A  *  Q  :  L  M  Q  E  L  W  F  N  K  L  E  M  K  L  L  S  F  A  L  N  M  V  M  K  C  Q  Q  M  Y  C  L  N   : G  S  R  T  S  P  R  F  T  H  S  M  P  I  *  D  P  L  E  *  :  L  L  *  F  W  A  L  M  R  R  K  G  P  S  S  S  N  V  T  L  L  V  I  F  L  V  I  R :   L  Q  V  P  D  L  K  S  K  R  Q  L  T  F  W  R  R  K  *  K  I  T  L  R  S  P  M  R  K  L  F  R :   P  L  F  L  L  F  N  L  F  C  K  K  I  S  R  P  V  K  L  R :   L  V  L  *  E  K  K  I  P  S  L  E  C  *  L  L  R  K  S  T  S  T  *  Q  P  S  V  S  V  T  D  *  P  H  D  T  Q  S  V  F  C  *  K  C  M  F  C  Y  Q  D  L  Q  K  R  S  H  L  I  V  S  C  Y  Q  S  F  C  I  C  *  *  M  S  F  Y  L  S  N  V  T  F  H  G  I  F  L  V  S  T  K  R  L  N  P  S  I  I  I  Y  L  R  S  F  V  L  *  L  S  Y  Y  F  I  I  V  F  A  P   </second_frame>
            <third_frame>   Y  *  K  K  P  *  I  S  S  T  K  I  F  R  S  N  *  E  N  Q  T  V  E  S  N  N  E  S  R  K  W  R  R  I  R  S  S  H  Y  D  L  L  T  G  R  S  S  L  S  S  R :   I  C  F  *  G  C  E  G  S  W  N  H  I  Y  W  C  P  W  K  G  L  C  L  C  C  Y  S  E  E  S  P   : *  Q  A  I  G  S  D  Q  C  I  P  F  V  P  N  Y  Q  V  S  W  T  I  G  Y  W  H  D  S :   *  C  K  N  F  G  S  T  S  S  K  *  S  C  *  V  S  L  *  I  W  L  *  N  A  S  R  C  T  V  *  M  :  D  R  G  Q  V  P  G  L  H  T  A  C  L  Y  E  T  P  W  S  S :   C  Y  D  F  G  H  *  *  G  E  R  A  P  A  L  Q  M  *  P  C  W  S  F  F  W  S  *   : G  Y  K  C  R  I  *  R  A  R  G  N  *  L  F  G  E  E  N  E  K  *  P  C  V  L  L  *  G  N  C  S   : D  H  Y  F  C  S  S  I  C  S  A  R  R  F  Q  G  Q  *  N  *   : G  W  C  C  E  K  R  R  S  R  L  *  S  V  N  Y  *  G  N  R  R  A  L  N  S  H  Q  *  A  *  L  I  S  H  M  I  H  S  P  F  S  V  R  N  V  C  F  A  I  K  T  C  K  R  D  P  I  *  L  L  V  A  I  N  P  S  A  Y  A  D  K  *  V  S  I  C  R  M  *  H  F  M  G  S  S  *  F  Q  Q  N  V  *  I  L  L  S  L  S  I  Y  D  L  L  Y  F  D  Y  H  T  I  L  S  L  F  L  P  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93872" stop="93956"/>
                    <exon start="94104" stop="94198"/>
                    <exon start="94868" stop="94949"/>
                    <exon start="95415" stop="95511"/>
                    <exon start="95883" stop="95941"/>
                    <exon start="96074" stop="96156"/>
                    <exon start="96910" stop="97005"/>
                    <exon start="97490" stop="97549"/>
                    <exon start="97893" stop="97985"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRTMSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPADVLSKWIADKSQVYTQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNNPAFSYEETVQTTISALQSVLQEDFKASEIEVGVVRKEDPVFRVLTTEEIDEHLTAISERD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="95412" e_stop="95511"/>
            <exon e_start="95883" e_stop="95941"/>
            <exon e_start="96074" e_stop="96156"/>
            <exon e_start="96910" e_stop="97005"/>
            <exon e_start="97490" e_stop="97527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.891" acc_prob="0.734" e_score="0.900"/>
          <exon-intron don_prob="0.712" acc_prob="0.992" e_score="0.729"/>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="0.964"/>
          <exon-intron don_prob="0.904" acc_prob="0.816" e_score="0.979"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="95412" e_stop="95511" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.891" acc_prob="0.734">
            <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371"/>
          </intron>
          <exon e_serial="2" e_score="0.729">
            <gDNA_exon_boundary e_start="95883" e_stop="95941" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.712" acc_prob="0.992">
            <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="96074" e_stop="96156" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753"/>
          </intron>
          <exon e_serial="4" e_score="0.979">
            <gDNA_exon_boundary e_start="96910" e_stop="97005" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.904" acc_prob="0.816">
            <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484"/>
          </intron>
          <exon e_serial="5" e_score="0.974">
            <gDNA_exon_boundary e_start="97490" e_stop="97527" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95412" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565095" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG : GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG : TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG : GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG : ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGA</gDNA_template>
            <first_frame> Q  L  M  Q  E  L  W  F  N  K  L  E  M  K  L  L  S  F  A  L  N  M  V  M  K  C  Q  Q  M  Y  C  L  N   : G  S  R  T  S  P  R  F  T  H  S  M  P  I  *  D  P  L  E  *  :  L  L  *  F  W  A  L  M  R  R  K  G  P  S  S  S  N  V  T  L  L  V  I  F  L  V  I  R :   L  Q  V  P  D  L  K  S  K  R  Q  L  T  F  W  R  R  K  *  K  I  T  L  R  S  P  M  R  K  L  F  R :   P  L  F  L  L  F  N  L  F  C  K  K  </first_frame>
            <second_frame>  S  *  C  K  N  F  G  S  T  S  S  K  *  S  C  *  V  S  L  *  I  W  L  *  N  A  S  R  C  T  V  *  M  :  D  R  G  Q  V  P  G  L  H  T  A  C  L  Y  E  T  P  W  S  S :   C  Y  D  F  G  H  *  *  G  E  R  A  P  A  L  Q  M  *  P  C  W  S  F  F  W  S  *   : G  Y  K  C  R  I  *  R  A  R  G  N  *  L  F  G  E  E  N  E  K  *  P  C  V  L  L  *  G  N  C  S   : D  H  Y  F  C  S  S  I  C  S  A  R  R </second_frame>
            <third_frame>   A  D  A  R  T  L  V  Q  Q  A  R  N  E  A  A  E  F  R  F  K  Y  G  Y  E  M  P  A  D  V  L  S  K  W :   I  A  D  K  S  Q  V  Y  T  Q  H  A  Y  M  R  P  L  G  V   : V  A  M  I  L  G  I  D  E  E  K  G  P  Q  L  F  K  C  D  P  A  G  H  F  F  G  H  K  :  A  T  S  A  G  S  K  E  Q  E  A  I  N  F  L  E  K  K  M  K  N  N  P  A  F  S  Y  E  E  T  V  Q  :  T  T  I  S  A  L  Q  S  V  L  Q  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95414" stop="95511"/>
                    <exon start="95883" stop="95941"/>
                    <exon start="96074" stop="96156"/>
                    <exon start="96910" stop="97005"/>
                    <exon start="97490" stop="97525"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADARTLVQQARNEAAEFRFKYGYEMPADVLSKWIADKSQVYTQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNNPAFSYEETVQTTISALQSVLQE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="108699" PGL_stop="105336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108699" e_stop="108522"/>
            <exon e_start="107679" e_stop="107629"/>
            <exon e_start="107506" e_stop="107447"/>
            <exon e_start="105866" e_stop="105835"/>
            <exon e_start="105751" e_stop="105486"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.972"/>
          <exon-intron don_prob="0.864" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.066" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.573" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="108699" e_stop="108522" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108521" i_stop="107680" i_length="842"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107679" e_stop="107629" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.864" acc_prob="0.999">
            <gDNA_intron_boundary i_start="107628" i_stop="107507" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107506" e_stop="107447" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.066">
            <gDNA_intron_boundary i_start="107446" i_stop="105867" i_length="1580"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105866" e_stop="105835" e_length="32"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.573">
            <gDNA_intron_boundary i_start="105834" i_stop="105752" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105751" e_stop="105486" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108699" stop="108522"/>
              <exon start="107679" stop="107629"/>
              <exon start="107506" stop="107447"/>
              <exon start="105866" stop="105835"/>
              <exon start="105751" stop="105486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588056" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAATAATTTTGAAAAATCTGTGAACTCTTCGAAGCTTAAAAATTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGG : ATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGT : GTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGG : GTGGCTCAAGACTCGTCAAGTGTGTCCACTTG : ATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCG</gDNA_template>
            <first_frame> R  N  N  F  E  K  S  V  N  S  S  K  L  K  N  S  M  A  S  P  D  T  D  V  P  M  V  P  A  G  E  S  S  T  G  A  G  T  S  N  K  K  P  K  R  F  E  I  K  K  W  N  A  V  S  L  W  A  W   : D  I  V  V  D  N  C  A  I  C  R  N  H  I  M  D  L   : C  I  E  C  Q  A  N  Q  A  S  A  T  S  E  E  C  T  V  A  W   : G  G  S  R  L  V  K  C  V  H  L  :  I  T  A  S  G  S  F  R  S  M  V  T  R  I  Y  C  W  C  T  V  N  E  R  S  F  K  T  M  V  I  T  V  F  L  S  S  T  L  K  R  T  I  L  L  P  Y  V  P  F  V  F  A  L  Q  I  S  K  A  M  T  R  T  M  F  L  I  V  A  C  L  F  *  V  A  S  K  E  *  N  V  F  G  D  *  P  F  L  I   </first_frame>
            <second_frame>  E  I  I  L  K  N  L  *  T  L  R  S  L  K  I  Q  W  R  H  R  I  P  M  C  R  W  F  P  P  A  R  V  Q  P  E  L  E  R  L  T  K  S  R  S  D  L  R  S  K  S  G  T  P  F  L  S  G  L  G  :  I  L  W  *  I  I  V  P  S  V  G  I  T  S  W  I  C  :  V  S  S  V  K  L  I  K  L  A  Q  Q  V  R  N  A  Q  L  L  G  :  V  A  Q  D  S  S  S  V  S  T  * :   *  Q  R  V  G  V  S  E  V  W  S  L  E  F  T  V  G  V  Q  *  M  R  G  A  S  K  L  W  S  L  Q  F  F  C  H  R  R  *  K  E  Q  F  C  C  L  M  F  L  S  F  L  L  C  K  Y  P  K  Q  *  L  E  L  C  F  *  L  S  H  V  C  F  R  L  P  Q  K  N  E  M  C  L  E  T  N  H  F  L  F  </second_frame>
            <third_frame>   K  *  F  *  K  I  C  E  L  F  E  A  *  K  F  N  G  V  T  G  Y  R  C  A  D  G  S  R  R  R  E  F  N  R  S  W  N  V  *  Q  K  A  E  A  I  *  D  Q  K  V  E  R  R  F  S  L  G  L  G :   Y  C  G  R  *  L  C  H  L  *  E  S  H  H  G  S  V :   Y  R  V  S  S  *  S  S  *  R  N  K  *  G  M  H  S  C  L  G :   W  L  K  T  R  Q  V  C  P  L   : D  N  S  E  W  E  F  Q  K  Y  G  H  *  N  L  L  L  V  Y  S  E  *  E  E  L  Q  N  Y  G  H  Y  S  F  S  V  I  D  V  E  K  N  N  S  A  A  L  C  S  F  R  F  C  S  A  N  I  Q  S  N  D  S  N  Y  V  F  N  C  R  M  S  V  L  G  C  L  K  R  M  K  C  V  W  R  L  T  I  S  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108699" stop="108522"/>
                    <exon start="107679" stop="107629"/>
                    <exon start="107506" stop="107447"/>
                    <exon start="105866" stop="105835"/>
                    <exon start="105751" stop="105536"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNNFEKSVNSSKLKNSMASPDTDVPMVPAGESSTGAGTSNKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGGSRLVKCVHLITASGSFRSMVTRIYCWCTVNERSFKTMVITVFLSSTLKRTILLPYVPFVFALQISKAMTRTMFLIVACLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108695" e_stop="108522"/>
            <exon e_start="107679" e_stop="107629"/>
            <exon e_start="107506" e_stop="107447"/>
            <exon e_start="105906" e_stop="105835"/>
            <exon e_start="105751" e_stop="105336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.573" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108695" e_stop="108522" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108521" i_stop="107680" i_length="842"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107679" e_stop="107629" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.864" acc_prob="0.999">
            <gDNA_intron_boundary i_start="107628" i_stop="107507" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107506" e_stop="107447" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="107446" i_stop="105907" i_length="1540"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105906" e_stop="105835" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.573">
            <gDNA_intron_boundary i_start="105834" i_stop="105752" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="0.969">
            <gDNA_exon_boundary e_start="105751" e_stop="105336" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108695" stop="108522"/>
              <exon start="107679" stop="107629"/>
              <exon start="107506" stop="107447"/>
              <exon start="105906" stop="105835"/>
              <exon start="105751" stop="105336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATTTTGAAAAATCTGTGAACTCTTCGAAGCTTAAAAATTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGG : ATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGT : GTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGG : GTGTTTGCAACCATGCATTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTG : ATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCGAATTTACATATTTTCTTTGTTCTTCAGTGTTCATTACTATTTGTTGCTCTATTTATTTTGTATCGTGTTTTTTGCTGTCCTATTTTCGTTTAATTGTTTTTCAAATTCTACTTTTCTTGTGAGCCAAGGGTCTATTGATAACAACCTCTA</gDNA_template>
            <first_frame> I  I  L  K  N  L  *  T  L  R  S  L  K  I  Q  W  R  H  R  I  P  M  C  R  W  F  P  P  A  R  V  Q  P  E  L  E  R  L  T  K  S  R  S  D  L  R  S  K  S  G  T  P  F  L  S  G  L  G  :  I  L  W  *  I  I  V  P  S  V  G  I  T  S  W  I  C  :  V  S  S  V  K  L  I  K  L  A  Q  Q  V  R  N  A  Q  L  L  G  :  V  F  A  T  M  H  S  T  S  I  A  L  A  G  G  S  R  L  V  K  C  V  H  L  :  I  T  A  S  G  S  F  R  S  M  V  T  R  I  Y  C  W  C  T  V  N  E  R  S  F  K  T  M  V  I  T  V  F  L  S  S  T  L  K  R  T  I  L  L  P  Y  V  P  F  V  F  A  L  Q  I  S  K  A  M  T  R  T  M  F  L  I  V  A  C  L  F  *  V  A  S  K  E  *  N  V  F  G  D  *  P  F  L  I  R  I  Y  I  F  S  L  F  F  S  V  H  Y  Y  L  L  L  Y  L  F  C  I  V  F  F  A  V  L  F  S  F  N  C  F  S  N  S  T  F  L  V  S  Q  G  S  I  D  N  N  L   </first_frame>
            <second_frame>  *  F  *  K  I  C  E  L  F  E  A  *  K  F  N  G  V  T  G  Y  R  C  A  D  G  S  R  R  R  E  F  N  R  S  W  N  V  *  Q  K  A  E  A  I  *  D  Q  K  V  E  R  R  F  S  L  G  L  G :   Y  C  G  R  *  L  C  H  L  *  E  S  H  H  G  S  V :   Y  R  V  S  S  *  S  S  *  R  N  K  *  G  M  H  S  C  L  G :   C  L  Q  P  C  I  P  L  P  L  H  *  Q  V  A  Q  D  S  S  S  V  S  T  * :   *  Q  R  V  G  V  S  E  V  W  S  L  E  F  T  V  G  V  Q  *  M  R  G  A  S  K  L  W  S  L  Q  F  F  C  H  R  R  *  K  E  Q  F  C  C  L  M  F  L  S  F  L  L  C  K  Y  P  K  Q  *  L  E  L  C  F  *  L  S  H  V  C  F  R  L  P  Q  K  N  E  M  C  L  E  T  N  H  F  L  F  E  F  T  Y  F  L  C  S  S  V  F  I  T  I  C  C  S  I  Y  F  V  S  C  F  L  L  S  Y  F  R  L  I  V  F  Q  I  L  L  F  L  *  A  K  G  L  L  I  T  T  S  </second_frame>
            <third_frame>   N  F  E  K  S  V  N  S  S  K  L  K  N  S  M  A  S  P  D  T  D  V  P  M  V  P  A  G  E  S  S  T  G  A  G  T  S  N  K  K  P  K  R  F  E  I  K  K  W  N  A  V  S  L  W  A  W   : D  I  V  V  D  N  C  A  I  C  R  N  H  I  M  D  L   : C  I  E  C  Q  A  N  Q  A  S  A  T  S  E  E  C  T  V  A  W   : G  V  C  N  H  A  F  H  F  H  C  I  S  R  W  L  K  T  R  Q  V  C  P  L   : D  N  S  E  W  E  F  Q  K  Y  G  H  *  N  L  L  L  V  Y  S  E  *  E  E  L  Q  N  Y  G  H  Y  S  F  S  V  I  D  V  E  K  N  N  S  A  A  L  C  S  F  R  F  C  S  A  N  I  Q  S  N  D  S  N  Y  V  F  N  C  R  M  S  V  L  G  C  L  K  R  M  K  C  V  W  R  L  T  I  S  Y  S  N  L  H  I  F  F  V  L  Q  C  S  L  L  F  V  A  L  F  I  L  Y  R  V  F  C  C  P  I  F  V  *  L  F  F  K  F  Y  F  S  C  E  P  R  V  Y  *  *  Q  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108693" stop="108522"/>
                    <exon start="107679" stop="107629"/>
                    <exon start="107506" stop="107447"/>
                    <exon start="105906" stop="105835"/>
                    <exon start="105751" stop="105714"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFEKSVNSSKLKNSMASPDTDVPMVPAGESSTGAGTSNKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107667" stop="107629"/>
                    <exon start="107506" stop="107447"/>
                    <exon start="105906" stop="105835"/>
                    <exon start="105751" stop="105536"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIVPSVGITSWICVSSVKLIKLAQQVRNAQLLGVFATMHSTSIALAGGSRLVKCVHLITASGSFRSMVTRIYCWCTVNERSFKTMVITVFLSSTLKRTILLPYVPFVFALQISKAMTRTMFLIVACLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 41 chains have been computed
$ 
$ memory statistics:
$ 65128 bytes spliced alignments in total
$ 31 spliced alignments have been stored
$ 2100 bytes was the average size of a spliced alignment
$ 30296 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1514 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 43 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 23:37:20
-->
