<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 23:31:36"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545880" ref_strand="-" ref_description="SGN-E545880 [TUS-68-P8]">
      <seq>aaaggcattagctcagtctggtgtatccaaggaagatgtgaactacattaatgcgcatggcacttccacaccagcaggggatctcaaagagtaccacgcgattgtacattgttttggccagaacccagagttacgaattaactccacgaagtctatgattggtcacctgctaggagctgctggtgctgttgaagctgtagcaactattcaggcaatacgaactggatgggttcatccgaatataaatcttgataccccagatgagggtgtggatacaaatgtacttgtgggttcgaaaaaagaaagattggatattaaggtggcaatatcgaattcatttggatttggtggccataattcatcgatattatttgctccctacaagtaaatatattgtccatcccaacaaacctaaggtaaattgaattagggtccttgatttcgagttacatggagtcaaaattgacgatgacttctctagtggaagaaggtatttgtagtagccggtagataattgttggagcaagcacgtgaaagggaaaatcgcgtagaattttccttttcgatcatggctactatagcattcttggtttcgatcataagatatatataggttgatccgatatctgattcaaatccaatatagttttcaaaaattattgtatcaaaattgttgttactatagaacatttctaataatagcatactattattctcttcaaaaaaaaaaaaaaaaaactcgagatagttcctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="8272" stop="5602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7973" g_stop="7844" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7843" i_stop="7752" i_length="92">
            <donor d_prob="0.695" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7751" g_stop="7671" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="211" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7670" i_stop="7347" i_length="324">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7346" g_stop="7287" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="271" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7286" i_stop="6812" i_length="475">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6811" g_stop="6667" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="416" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6666" i_stop="6209" i_length="458">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6208" g_stop="5902" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="725" r_length="309" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="726" polyA_stop="739"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E545880" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545880" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7973" e_stop="7844"/>
          <exon e_start="7751" e_stop="7671"/>
          <exon e_start="7346" e_stop="7287"/>
          <exon e_start="6811" e_stop="6667"/>
          <exon e_start="6208" e_stop="5902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCATTAGCTCAGTCTGGTGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGGCACTTCCACACCGGCAGGGGATCTCAAAGAGTACCAAGCGATTGTACATTGTTTTGGCCAGAACCCAGAGGTTAGAGGTTCTCCGAACGACTGTTGTTTATGCCTGTTCCTTCAGTTTCCTTTTTCCAGGTACTTAATCAATTGCTACTCCACGTTTTACAGTTACGAGTGAACTCCACGAAGTCTATGATTGGTCACCTACTAGGAGCTGCTGGTGCTGTTGAAGCTGTAGCAATTATTCAGGTAACGTTGTATTTCGTATGCCTTGAAGTAGTGTTGCAACTTGACTTCTGTTGCTTTTAGTTTCTCGTTTAACAAATCGTCTACATAATTTACACGTTTACACAAACATAGAGTTACAGGGCGTGGATTCTCCTATTGCGACATGTATAGGTTATCATGCCATTTAGGTTCAATTTATCATAGATCACTCATTCTGGCTTATTTACATTAAAAAGAAAGCATGTATAGGCTATCATGCCAATTTCGAAAGATTTTCCTTTGTGCTGATCATCCTAAAGATTCTGTTGCTCGAGTCTTGACAGAGGGTTCATACGGATTTTGCAGGCAATACGAACTGGATGGGTTCATCCGAATATAAATCTTGATACCCCAGATGAGGGTGTGGTATGGCTCCCTTTTCGTTGCATTTTCAATTGTGTATTGTTCTTTTGAGCATGATCTAGTATCCTAGACTTTTATTAAACTACCAAGTCGATTGACATCACTTGCATTGGTCTTTTATCTCAAATTTTCTATTCCCTTCGTTTCAATTCGTTCGTCATACTTTCCTCTTTCAAAAAGAATGGCTCTTTCCATTTTTGGCAACTCTTGGATTTCAACTTTCCGTCTGACATGTAGGATTAAAGTACAGTCTACGTGCCTTTAGTCTAAGACCCCAAGAATCAAAATGTCTTTTTTTTTAAAACTCCGTGCCAAATCAAAATCAGGTAAACAAATTGAAACGGAGGGAGAATCATATTACAAATAAGTCTCTTATATGATATGAGGTTGAATCATCTCTTTCTTGGTTCACTGTTGCGACAATTTAGTGTTGAAAATCAACGATTTGATGATATATATATATCCATATGCATAACAGGATACAAATGTACTTGTGGGTTCGAAAAAAGAAAGATTGGATATTAAGGTGGCGATATCGAATTCTTTTGGATTTGGTGGCCATAATTCATCGATATTATTTGCTCCCTACAAGTAAATATATTGTCCATCCCAACAAACCTAAGGTATGTATGGTTGTTGATTTTGAATGTAAAGTTCAGTTATGAGTGTTATGACTTCGTAGATTGAAACAACCTGTCCTTTGCGTGTCAAGGAAGACGAAAATAATAAGCACGAAAAGAGGGCGTTTAGAGTAATTGAAGAGATTAAGACATCTCTTCTAGTCGGAGTCTGTCACTATCTGTTGTTTCTTGTACTTCGATTATCGTATTATGTTTGCTTTGTTATGCTTTCACTTTCGTTACTCTTGAACCAAAGGTCTATTAGAGACAACCTCTCTACCTCTTGAGGTAGAGTTAAGGTTTCTGTATACTCTACCTTCCTTAAACCCCGCGTTGTGAGACTACACTGGGTATGTTGTTGTTGTCGCTGCTCTCTCTCCTTCATTTTTTATCGTTTCTACGTGAAAGCACTTGTTTTGATTCTTATCTTCGTTGTAAGGATACGCTTCATTTTTTGTCAGGTAAATTGAAATAGGGTCCTTGATTTCGAGTTACATGGAGTCAAAATTGACGATGACTTCTCTAGTGGAAGAAGGTATTTGTAGTAACCGGTAGATAATTGTTGGAGCAAGCACGTGAAAGGGAAAATCGCGTAGGATTTTCCTTTTCGATCATGGCTACTATAGCATTCTTGGTTTCGATCAT-A-ATATATATAGATTGATCCGATATCTGATTCAAATCCAATATAGTTTTCAAAAATTATTGTATCAAAATTGTTGTTACTATAGAACATTTCTAATAATAGCATACTATTATTCTCTTCAAAAA</genome_strand>
        <mrna_strand>AAAGGCATTAGCTCAGTCTGGTGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGGCACTTCCACACCAGCAGGGGATCTCAAAGAGTACCACGCGATTGTACATTGTTTTGGCCAGAACCCAGAG............................................................................................TTACGAATTAACTCCACGAAGTCTATGATTGGTCACCTGCTAGGAGCTGCTGGTGCTGTTGAAGCTGTAGCAACTATTCAG....................................................................................................................................................................................................................................................................................................................................GCAATACGAACTGGATGGGTTCATCCGAATATAAATCTTGATACCCCAGATGAGGGTGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAAATGTACTTGTGGGTTCGAAAAAAGAAAGATTGGATATTAAGGTGGCAATATCGAATTCATTTGGATTTGGTGGCCATAATTCATCGATATTATTTGCTCCCTACAAGTAAATATATTGTCCATCCCAACAAACCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATTGAATTAGGGTCCTTGATTTCGAGTTACATGGAGTCAAAATTGACGATGACTTCTCTAGTGGAAGAAGGTATTTGTAGTAGCCGGTAGATAATTGTTGGAGCAAGCACGTGAAAGGGAAAATCGCGTAGAATTTTCCTTTTCGATCATGGCTACTATAGCATTCTTGGTTTCGATCATAAGATATATATAGGTTGATCCGATATCTGATTCAAATCCAATATAGTTTTCAAAAATTATTGTATCAAAATTGTTGTTACTATAGAACATTTCTAATAATAGCATACTATTATTCTCTTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356109" ref_strand="-" ref_description="SGN-E356109 [cLHT-7-M23]">
      <seq>ggtaaattgaattagggtccttgatttcgagttacatggagtcaaaattgccgatgacttctctagtggaagaaggtatttgtagtagccggtacataattgttggagcaagcacgtgaaagggaaaatcgcgtagaattttccttttcgatcatggctactatagcattcttggtttcgatcataagatatatataggttgatccgatatctgattcaaatccaatatagttttcaaaaattattgtatcaaaattgttgttactatagaacatttctaataatagcatactattattctcttcaaaaaaaaaaaaaaaaaactcgagatagttcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="6509" stop="5602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6209" g_stop="5902" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="311" polyA_stop="324"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E356109" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6209" e_stop="5902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAAATTGAAATAGGGTCCTTGATTTCGAGTTACATGGAGTCAAAATTGACGATGACTTCTCTAGTGGAAGAAGGTATTTGTAGTAACCGGTAGATAATTGTTGGAGCAAGCACGTGAAAGGGAAAATCGCGTAGGATTTTCCTTTTCGATCATGGCTACTATAGCATTCTTGGTTTCGATCAT-A-ATATATATAGATTGATCCGATATCTGATTCAAATCCAATATAGTTTTCAAAAATTATTGTATCAAAATTGTTGTTACTATAGAACATTTCTAATAATAGCATACTATTATTCTCTTCAAAAA</genome_strand>
        <mrna_strand>GGTAAATTGAATTAGGGTCCTTGATTTCGAGTTACATGGAGTCAAAATTGCCGATGACTTCTCTAGTGGAAGAAGGTATTTGTAGTAGCCGGTACATAATTGTTGGAGCAAGCACGTGAAAGGGAAAATCGCGTAGAATTTTCCTTTTCGATCATGGCTACTATAGCATTCTTGGTTTCGATCATAAGATATATATAGGTTGATCCGATATCTGATTCAAATCCAATATAGTTTTCAAAAATTATTGTATCAAAATTGTTGTTACTATAGAACATTTCTAATAATAGCATACTATTATTCTCTTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200032" ref_strand="+" ref_description="SGN-E200032 [cLEC-8-A10]">
      <seq>ttacaggaatggatgtgatcacaccaaatggtcaggatcccgatgtgttctatgaaaacttgcttcaaggtgtcagtggcataagtgagatagaatcttttgattgttcacaatttccaacaagaattgctggagagatcaagtctttctcaagtgatggctggatttcacctaaactttctaaacgaatggacaagttcatgctttacgctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="11122" stop="10235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10822" g_stop="10701" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10700" i_stop="10628" i_length="73">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10627" g_stop="10535" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="215" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E200032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10822" e_stop="10701"/>
          <exon e_start="10627" e_stop="10535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGGAATGGATGTGATCACACCAAATGGTCAGGATCCCGATGTGTTCTATGAAAACTTGCTTCAAGGTGTCAGTGGCATAAGTGAGATAGAATCTTTTGATTGTTCACAATTTCCAACAGTACGTCTTCTTCTTTGGTTAGTTTTTCTCTAAATGTAATATTTTAGATGTTAAAAAAGGGGTACAATTGCAGAGAATTGCTGGAGAGATCAAGTCTTTCTCAAGTGATGGCTGGATTTCACCTAAACTTTCTAAACGAATGGACAAGTTCATGCTTTACGCTCTA</genome_strand>
        <mrna_strand>TTACAGGAATGGATGTGATCACACCAAATGGTCAGGATCCCGATGTGTTCTATGAAAACTTGCTTCAAGGTGTCAGTGGCATAAGTGAGATAGAATCTTTTGATTGTTCACAATTTCCAACA.........................................................................AGAATTGCTGGAGAGATCAAGTCTTTCTCAAGTGATGGCTGGATTTCACCTAAACTTTCTAAACGAATGGACAAGTTCATGCTTTACGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265218" ref_strand="-" ref_description="SGN-E265218 [cLEI-2-B16]">
      <seq>tcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcataccagtattttgcagtgtagtatagaaaagaggagattgttgtaaccattttggaataaaacttttgcaaattaatggtcaatttctagtgcagaatccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="20100" stop="18519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="83" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19131" g_stop="18815" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="400" r_length="317" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E265218" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265218" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGAATCCAGTCT</genome_strand>
        <mrna_strand>GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGAATCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265217" ref_strand="+" ref_description="SGN-E265217 [cLEI-2-B14]">
      <seq>tttttggattctgcactagaaattgaccatgaattggcaaaagctttatgccaaaatggttacaacaatctcctcttttctatactacactgcaaaatactggtatgagaatgaactgacttgttaaataaataacaaaacatttactgaagcacaggaattacatcagatgccctcaatgtgatgtattcagaaccatcagctcctttgaagtcattgccagcatatttggaatacaaaactgtatttccaggagatactgaaagtgctttccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="18519" stop="19391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18815" g_stop="19091" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E265217" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18815" e_stop="19091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTGGATTCTGCACTAGAAATTGACCATTAATTTGCAAAAGTTTTATTCCAAAATGGTTACAACAATCTCCTCTTTTCTATACTACACTGCAAAATACTGGTATGAGAATGAACTGACTTGTTAAATAAATAACAAAACATTTACTGAAGCACAGCAATTACATCAGATGCCCTCAATGTGATGTATTCAGAACCATCAGCTCCTTTGAAGTCATTGCCAGCATATTTGGAATACAAAACTGTATTTCCAGGAGATACTGAAAGTGCTTTCCTTT</genome_strand>
        <mrna_strand>TTTTTGGATTCTGCACTAGAAATTGACCATGAATTGGCAAAAGCTTTATGCCAAAATGGTTACAACAATCTCCTCTTTTCTATACTACACTGCAAAATACTGGTATGAGAATGAACTGACTTGTTAAATAAATAACAAAACATTTACTGAAGCACAGGAATTACATCAGATGCCCTCAATGTGATGTATTCAGAACCATCAGCTCCTTTGAAGTCATTGCCAGCATATTTGGAATACAAAACTGTATTTCCAGGAGATACTGAAAGTGCTTTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733008" ref_strand="+" ref_description="SGN-E733008 [LB03CH09]">
      <seq>catcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcataccagtattttgcagtgtagtatagaaaagaggagattgttgtaaccattttggaataaaacttttgcaaattaatggtcaatttctagtgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="20821" stop="18523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20521" g_stop="20433" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="245" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="323" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19131" g_stop="18816" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="639" r_length="316" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E733008" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20521" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGAATCCAGTC</genome_strand>
        <mrna_strand>CATCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734734" ref_strand="+" ref_description="SGN-E734734 [LB13BG11]">
      <seq>cggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcataccagtattttgcagtgtagtatagaaaagaggagattgttgtaaccattttggaataaaacttttgcaaattaatggtcaatttctagtgcagaatccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="20781" stop="18519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20481" g_stop="20433" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="205" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="283" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19131" g_stop="18819" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="596" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="614"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E734734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20481" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGAATCCA</genome_strand>
        <mrna_strand>CGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGAATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372188" ref_strand="+" ref_description="SGN-E372188 [TUS-30-N22](-)">
      <seq>cttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttttgggggattgtttttgagccaggctgcaaaggaaaaaccttcatttggggcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatttcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttttgaatacatcacattgagggcatttgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcataccagtattttgcagtgtagtatagaaaaaaggagattgttgtaaccattttggaataaaacttttgcaaattaatggtcaatttttagtgcagaatcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="20519" stop="18520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20219" g_stop="20195" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="103" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19131" g_stop="18819" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="416" r_length="313" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="445"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E372188" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20219" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGAATCCA</genome_strand>
        <mrna_strand>CTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTTTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAAAAACCTTCATTTGGGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATTTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTTTGAATACATCACATTGAGGGCATTTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAAAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTTTAGTGCAGAATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351010" ref_strand="+" ref_description="SGN-E351010 [cTOS-6-K3]">
      <seq>ttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcataccagtattttgcagtgtagtatagaaaagaggagattgttgtaaccattttggaataaaacttttgcaaattaatggtcaatttctagtgcagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="20559" stop="18521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20259" g_stop="20195" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19131" g_stop="18821" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="454" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E351010" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20259" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGAATC</genome_strand>
        <mrna_strand>TTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287111" ref_strand="+" ref_description="SGN-E287111 [cLES-6-M17]">
      <seq>ttgaatgacagagttctaatctaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcaatttattctcaaaccaatattttgccgtggtacatataaaagaagggaatggtgcaaccattttggaataaaacttttgcaaattaatggtcaatttctagagccgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="20518" stop="18522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20218" g_stop="20195" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="102" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19131" g_stop="18822" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="412" r_length="310" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E287111" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20218" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGAAT</genome_strand>
        <mrna_strand>TTGAATGACAGAGTTCTAATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAATTTATTCTCAAACCAATATTTTGCCGTGGTACATATAAAAGAAGGGAATGGTGCAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGAGCCGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732936" ref_strand="+" ref_description="SGN-E732936 [LB03CB09]">
      <seq>ctcttttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcataccagtattttgcagtgtagtatagaaaagaggagattgttgtaaccattttggaatnaaacttttgcaaattaatggtcaatttctagtgcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="21609" stop="18523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21309" g_stop="21239" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="251" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="407" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="485" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19131" g_stop="18824" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="793" r_length="308" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="794" polyA_stop="806"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E732936" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21309" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGA</genome_strand>
        <mrna_strand>CTCTTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATNAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734840" ref_strand="+" ref_description="SGN-E734840 [LB13CH11]">
      <seq>tgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcataccagtattttgcagtgtagtatagaaaagaggagattgttgtaaccattttggaataaaacttttgcaaattaatggtcaatttctagtgcagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="20600" stop="18523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20300" g_stop="20195" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="184" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19131" g_stop="18824" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="492" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E734840" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20300" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGA</genome_strand>
        <mrna_strand>TGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296440" ref_strand="-" ref_description="SGN-E296440 [cLET-19-K8](-)">
      <seq>tgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcataccagtattttgcagtgtagtatagaaaagaggagattgttgtaaccattttggaataaaacttttgcaaattaatggtcaatttctagtgcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="20549" stop="18523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20249" g_stop="20195" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19131" g_stop="18824" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="441" r_length="308" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="454"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E296440" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296440" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20249" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGA</genome_strand>
        <mrna_strand>TGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296302" ref_strand="+" ref_description="SGN-E296302 [cLET-19-K8]">
      <seq>tgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcataccagtattttgcagtgtagtatagaaaagaggagattgttgtaaccattttggaataaaacttttgcaaattaatggtcaatttctagtgcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="20549" stop="18523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20249" g_stop="20195" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19131" g_stop="18824" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="441" r_length="308" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="454"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E296302" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20249" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGA</genome_strand>
        <mrna_strand>TGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230214" ref_strand="+" ref_description="SGN-E230214 [cLEL-33-P15](-)">
      <seq>gaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcataccagtattttgcagtgtagtatagaaaaaaggagattgttgtaaccattttggaataaaacttttgcaaattaatggtcaatttctagtgcagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="19398" stop="18523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19098" g_stop="18824" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="276" polyA_stop="291"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E230214" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19098" e_stop="18824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGA</genome_strand>
        <mrna_strand>GAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAAAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217973" ref_strand="+" ref_description="SGN-E217973 [cLEL-23-B11](-)">
      <seq>gggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcataccagtattttgcagtgtagtatagaaaagaggagattgttgtaaccattttggaataaaacttttgcaaattaatggtcaatttctagtgcagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="19395" stop="18523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19095" g_stop="18824" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="273" polyA_stop="287"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E217973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19095" e_stop="18824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGA</genome_strand>
        <mrna_strand>GGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218049" ref_strand="+" ref_description="SGN-E218049 [cLEL-23-B11](-)">
      <seq>aaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcataccagtattttgcagtgtagtatagaaaagaggagattgttgtaaccattttggaataaaacttttgcaaattaatggtcaatttctagtgcagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="19391" stop="18523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19091" g_stop="18824" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="269" polyA_stop="282"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E218049" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19091" e_stop="18824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGA</genome_strand>
        <mrna_strand>AAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711301" ref_strand="+" ref_description="SGN-E711301 [FB01CE05]">
      <seq>agactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcataccactattttgcagtgtagtatagaaaagaggagattgttgtaaccattttggaataaaacttttgcaaattaatggtcaaaaacacaaaaaaacagaaaagaaatcaaaaccctccgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="20758" stop="18537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20458" g_stop="20433" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="0.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="182" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="260" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19131" g_stop="18838" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="554" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E711301" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20458" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCA</genome_strand>
        <mrna_strand>AGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCACTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700787" ref_strand="+" ref_description="SGN-E700787 [FA14AF08]">
      <seq>atctacaatagtctaaagtctaaacacacaccttcagtccatagtagagaaaacctctccattgctattaaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcataccagaattttgcagtgtaatatagaaaagaagagaatgttgtaaccattttggaataaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22435" stop="18556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22135" g_stop="22041" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="268" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="448" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="604" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="682" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19131" g_stop="18855" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="959" r_length="277" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E700787" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>959</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22135" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTACAATAGTCTAAAGTCTAAACACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTT</genome_strand>
        <mrna_strand>ATCTACAATAGTCTAAAGTCTAAACACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGAATTTTGCAGTGTAATATAGAAAAGAAGAGAATGTTGTAACCATTTTGGAATAAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287341" ref_strand="+" ref_description="SGN-E287341 [cLES-15-C11]">
      <seq>ccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttatgggggattgtttttgagccacgctgcaaaggagaaaccttcatttggcgcggtgatagctgatggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttgtgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtgaatgttttgatatttatttaacaagtcagttcattctcataccagccttttgcagtgtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="20642" stop="18598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20342" g_stop="20195" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="226" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19131" g_stop="18898" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="460" r_length="234" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E287341" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20342" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGT</genome_strand>
        <mrna_strand>CCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTATGGGGGATTGTTTTTGAGCCACGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGATGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTGTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTGAATGTTTTGATATTTATTTAACAAGTCAGTTCATTCTCATACCAGCCTTTTGCAGTGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726853" ref_strand="+" ref_description="SGN-E726853 [LA13AA11]">
      <seq>ctctccattgctattaaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcaataaatgttttgttatttatttaacaagtcagttcattctcataccagtattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22381" stop="18606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22081" g_stop="22041" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="214" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="394" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="550" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="628" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19131" g_stop="18906" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="854" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E726853" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22081" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGC</genome_strand>
        <mrna_strand>CTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAATAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717652" ref_strand="+" ref_description="SGN-E717652 [FC02BD07]">
      <seq>atcggccgaattgagtccatagtagagaaaacctctccattgctattaaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcaaaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22403" stop="18618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22113" g_stop="22041" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="246" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="426" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="582" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="660" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19131" g_stop="18918" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="874" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E717652" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22113" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATA</genome_strand>
        <mrna_strand>ATCGGCCGAATTGAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAAAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705642" ref_strand="+" ref_description="SGN-E705642 [FA27CH11]">
      <seq>gagaaaacctctccattgctattaaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22389" stop="18618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22089" g_stop="22041" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="222" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="402" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="558" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="636" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19131" g_stop="18918" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="850" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E705642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22089" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATA</genome_strand>
        <mrna_strand>GAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709177" ref_strand="+" ref_description="SGN-E709177 [FA42DG01]">
      <seq>cggttaacctctccattgctattaaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22384" stop="18618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22089" g_stop="22041" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="222" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="402" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="558" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="636" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19131" g_stop="18918" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="850" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E709177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22089" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATA</genome_strand>
        <mrna_strand>CGGTTAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726940" ref_strand="+" ref_description="SGN-E726940 [LA13BA10]">
      <seq>ccgtacaccttcagtccatagtagagaaaacctctccattgctattaaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22408" stop="18619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22112" g_stop="22041" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="245" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="425" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="581" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="659" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19131" g_stop="18919" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="872" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E726940" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22112" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCAT</genome_strand>
        <mrna_strand>CCGTACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728551" ref_strand="+" ref_description="SGN-E728551 [LA18AG06]">
      <seq>tctaacacacaccttcagtccatagtagagaaaacctctccattgctattaaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttcagtaaatgttttgttatttatttaacaagtcagttcattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22417" stop="18621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22117" g_stop="22041" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="249" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="429" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="585" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="663" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19131" g_stop="18921" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="874" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E728551" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22117" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAACACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTC</genome_strand>
        <mrna_strand>TCTAA-CACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728182" ref_strand="+" ref_description="SGN-E728182 [LA16DH05]">
      <seq>tctaatcacacaccttcagtccatagtagagaaaacctctccattgctattaaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcnatgacttcaaaggagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22417" stop="18663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22117" g_stop="22041" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="250" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="430" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="586" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="664" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19131" g_stop="18963" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="833" r_length="169" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E728182" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22117" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAACACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTC</genome_strand>
        <mrna_strand>TCTAATCACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCNATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730653" ref_strand="+" ref_description="SGN-E730653 [LA24DB02]">
      <seq>cctttttgggcattgctattaaggctcatcaattttgccaatacaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatacaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccatgctgcaaaggagaaaccttcatttggcgcggtgatagctgctggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggatatacagttttgtattccaaatatgctggcaatgacttcaaatgagctgatggttctgaatacatcacattgagggcatctgatgtaattgctgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22376" stop="18665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22076" g_stop="22041" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="46" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="219" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="399" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="555" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="633" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19131" g_stop="18965" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="800" r_length="167" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E730653" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22076" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="18965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCT</genome_strand>
        <mrna_strand>CATTGCTATTAAGGCTCATCAATTTTGCCAATACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATACAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCATGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGCTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGATATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAATGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710419" ref_strand="+" ref_description="SGN-E710419 [FA55BE02]">
      <seq>acactccttcagtccatagtagagaaaacctctccattgctattaaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaagaagggaaaaggaaagcactttcagtatctcctggaaataccgttttgtattcccaaatatgctggcaatgacttcaaaggaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22410" stop="18712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22110" g_stop="22041" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="243" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="423" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="579" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="657" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19131" g_stop="19012" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="778" r_length="121" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E710419" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22110" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="19012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATT-CCAAATATGCTGGCAATGACTTCAAAGGAGCTGAT</genome_strand>
        <mrna_strand>ACACTCCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAAGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACCGTTTTGTATTCCCAAATATGCTGGCAATGACTTCAAAGGAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728325" ref_strand="+" ref_description="SGN-E728325 [LA17BG12]">
      <seq>gttatccttaacagctctacacattttatctacaatagtctaaagtctaaacacacaccttcagtccatagtagagaaaacctctccattgctattaaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagttttgtattccaaatatgctggcaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22462" stop="18727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22162" g_stop="22041" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="295" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="475" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="631" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="709" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19131" g_stop="19027" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="814" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E728325" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22162" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="19027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCCTTAACAGCTCTACACATTTTATCTACAATAGTCTAAAGTCTAAACACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGAC</genome_strand>
        <mrna_strand>GTTATCCTTAACAGCTCTACACATTTTATCTACAATAGTCTAAAGTCTAAACACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348619" ref_strand="+" ref_description="SGN-E348619 [cTOF-30-G24]">
      <seq>accttcagtccatagtagagaaaacctctccattgctattaaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgntggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaancaaggtggcntgaagttgaggaaaaaacttctggggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtgatagctgttggacccggtcctctcgacgaggaagggaaaaggaaagcactttcagtatctcctggaaatacagtttttgtattccaaatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22406" stop="18737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22106" g_stop="22041" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="239" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="419" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="576" r_length="157" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="656" r_length="80" r_score="0.949"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19131" g_stop="19037" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="752" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E348619" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22106" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
          <exon e_start="19131" e_stop="19037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACG-TGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGC-TGAAGTTGAGGAAAAAACTTCT-GGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGTTGATATCGTTCACCTTTTCCGTGGTTGCAATCAGGTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAG-TTTTGTATTCCAAATATGC</genome_strand>
        <mrna_strand>ACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGNTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAANCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCNTGAAGTTGAGGAAAAAACTTCTGGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTTGTATTCCAAATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395139" ref_strand="+" ref_description="SGN-E395139 [TUS-37-O11]">
      <seq>ttgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtaataatatgctccctgcagttcagctagtattattactctcattatacttgttgatagaatatacttgttatctatgttgctcagaatctttgaaaatgtcaatgagtgcctgttgaatcctctaagaatagtatacttttagaggaatgtcaacggatgcttgtcgaaccctctaagaatagtatattattcgaggacccccgacacatgtgcagcaacattttcaaaaagtactagcaaggtatatatttatacagtttgaaataaccaattccaacataaaattggcatgtgttggctttatgtaataatagctacattacataaaatgtgaaataagactacacgtatttacaatgcgctgggaagtctcgttgctctaactaaaacaagaacgaaacatattcttgcattatagtttctcatacaactatcatgtgagccaaatgacttgtgacagtgaaagaatttacaccctaatcaacatgtagttctcttttaggtgacgtgttagtcgaaaacgttagtgtataaaaatcttaattcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="20086" stop="18866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19786" g_stop="19166" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E395139" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19786" e_stop="19166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGT</genome_strand>
        <mrna_strand>TTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAAAAATCTTAATTCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232827" ref_strand="+" ref_description="SGN-E232827 [cLED-8-E9]">
      <seq>tgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtaataatatgctccctgcagttcagctagtattattactctcattatacttgttgatagaatatacttgttatctatgttgctcagaatctttgaaaatgtcaatgagtgcctgttgaatcctctaagaatagtatacttttagaggaatgtcaacggatgcttgtcgaaccctctaagaatagtatattattcgaggacccccgacacatgtgcagcaacattttcaaaaagtactagcaaggtatatatttatacagtttgaaataaccaattccaacataaaattggcatgtgttggctttatgtaataatagctacattacataaaatgtgaaataagactacacgtatttacaatgcgctgggaagtctcgttgctctaactaaaacaagaacgaaacatattcttgcattatagtttctcatacaactatcatgtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="20085" stop="18974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19785" g_stop="19274" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E232827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19785" e_stop="19274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAG</genome_strand>
        <mrna_strand>TGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241636" ref_strand="+" ref_description="SGN-E241636 [cLED-36-J17]">
      <seq>tgaggaaaaaacttctgggggattgtttttgagccaggctgcaaaggagaaaccttcatttggcgcggtaataatatgctccctgcagttcagctagtattattactctcattatacttgttgatagaatatacttgttatctatgttgctcagaatctttgaaaatgtcaatgagtgcctgttgaatcctctaagaatagtatacttttagaggaatgtcaacggatgcttgtcgaaccctctaagaatagtatattattcgaggacccccgacacatgtgcagcaacattttcaaaaagtactagcaaggtatatatttatacagtttgaaataaccaattccaacataaaattggcatgtgttggctttatgtaataatagctacattacataaaatgtgaaataagactacacgtatttacaatgcgctgggaagtctcgttgctctaactaaaacaagaacgaaacatattcttgcattatagtttctcatacaactatcatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="20085" stop="18975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19785" g_stop="19275" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E241636" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19785" e_stop="19275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGA</genome_strand>
        <mrna_strand>TGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729362" ref_strand="+" ref_description="SGN-E729362 [LA20DD01]">
      <seq>agataacctctccttgctattaaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccacgctgcaaaggagaaaccttcatttggcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22388" stop="19419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22088" g_stop="22041" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="220" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="400" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="556" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="634" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E729362" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22088" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG</genome_strand>
        <mrna_strand>AGATAACCTCTCC-TTGCTATTAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCACGCTGCAAAGGAGAAACCTTCATTTGGCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342424" ref_strand="+" ref_description="SGN-E342424 [cTOF-8-O15]">
      <seq>taaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgangaaaaaacttctgggggattggttttgagccaggctgcaaaggagaaaccttncatttgcgcggtgatagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22367" stop="19413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22067" g_stop="22041" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="200" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="380" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="536" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19796" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="614" r_length="78" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E342424" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22067" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG</genome_strand>
        <mrna_strand>TAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGANGAAAAAACTTCTGGGGGATTGGTTTTGAGCCAGGCTGCAAAGGAGAAACCTTNCATTTGCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346222" ref_strand="+" ref_description="SGN-E346222 [cTOF-23-O7]">
      <seq>gtagagaaaacctctccattgctattaaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttgagccaggctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22392" stop="19444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22092" g_stop="22041" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="225" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="405" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="561" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19796" g_stop="19744" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="614" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E346222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22092" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGC</genome_strand>
        <mrna_strand>GTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327197" ref_strand="+" ref_description="SGN-E327197 [cTOC-19-A5]">
      <seq>ttaacagctctacacattttatctacaatagtctaaagtctaaacacacaccttcagtccatagtagagaaaacctctccattgctattaaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcagggtggctgaagttgaggaaaaacttctggggggatgtttttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22455" stop="19453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22155" g_stop="22041" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="288" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="468" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="624" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19796" g_stop="19753" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="667" r_length="43" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E327197" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22155" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACAGCTCTACACATTTTATCTACAATAGTCTAAAGTCTAAACACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAG</genome_strand>
        <mrna_strand>TTAACAGCTCTACACATTTTATCTACAATAGTCTAAAGTCTAAACACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAGG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGG-AAAAACTTCTGGGGGGATGTTTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212894" ref_strand="+" ref_description="SGN-E212894 [cLEC-73-L21]">
      <seq>ctcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactccaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagaattctaatcaaggtggctgaagttgaggaaaaaacttctgggggattgtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="21574" stop="19455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21274" g_stop="21239" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="216" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="372" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19796" g_stop="19755" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="414" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E212894" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21274" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTG</genome_strand>
        <mrna_strand>CTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCCAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAATTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291212" ref_strand="+" ref_description="SGN-E291212 [cLET-2-C2]">
      <seq>aaaacctctccattgctattaaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatctgcagcccttgaatgacagagttctaatcaaggtggctgaagttgaggaaaaaacttctggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22386" stop="19465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22086" g_stop="22041" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="219" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="399" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20195" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="555" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19796" g_stop="19765" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="587" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E291212" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22086" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20195"/>
          <exon e_start="19796" e_stop="19765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTTTGTTACTATTGCTCTTTATTTGTTTCTTTTTGTGGCATCTATATTTTGATTAAATGGTCCATACTCTGATAAATATTTCTACATTATTCGCTATTCTCGAATATCATTTTCTTCGGATAATGGTAAAAACAAACCCGAGTAATCATTTTTTCTGCGAGTTTCATATCCCAATTATCAATTTGTTTCCTTTATCCCAATATATGACTTGTCACGAATTTCATATCCCAATATAATCAATTGTTCCTTTTATATACCTGAACTATTACCATCTACGCCTTGTCACCGGTAGTTGGAGTGTGAAAAGTGATAGTTCTGGTGTGTCTTCGATCATTAATTCTCTTTTTTTTTTTAAGTATTAAGTTCTGGTTTGTGAGAGTTTTTGACTTTTTTATCAGGTGGCTGAAGTTGAGGAAAAAACTTCTGGGGG</genome_strand>
        <mrna_strand>AAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343210" ref_strand="+" ref_description="SGN-E343210 [cTOF-17-F14]">
      <seq>aaggaatggcgacaactcaactgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttatatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtccttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgagtgatagagctctggtgaagattaagactgcagaggagaagagtgtaagcggcatactgcttccagtatcagcacaatcgaagccgcaaggaggcgaggttgttgctgtcagggaatgtcattcaattggcaagaatactgtggagattagtataaagaatggtacccacgtggcgtactccaaatatgcggtaactgaactgcagtttgatggatcaaagcacctgattttgaaagatgatgacattgatggcatactagagacacatgatatcaaagatctgcagcccttgaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="21714" stop="19910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21414" g_stop="21239" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="356" r_length="180" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="0.92"/>
            <acceptor a_prob="0.905" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20350" g_stop="20210" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="497" r_length="141" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E343210" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21414" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGAC</genome_strand>
        <mrna_strand>AAGGAATGGCGACAACTCAACTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTATATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCCTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGAGTGATAGAGCTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAAGCGGCATACTGCTTCCAGTATCAGCACAATCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCAGGGAATGTCATTCAATTGGCAAGAATACTGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGCGTACTCCAAATATGCGGTAACTGAACTGCAGTTTGATGGATCAAAGCACCTGATTTTGAAAGATGATGACATTGATGGCATACTAGAGACACATGATATCAAAGATCTGCAGCCCTTGAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279645" ref_strand="+" ref_description="SGN-E279645 [cLER-5-A22]">
      <seq>aaaacctctccattgctattaaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttagatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtatgcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattaggataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaagcacctgattttgaaagaggatgacattgttggcatacttgagacagatgatatcaaggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22386" stop="19927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22086" g_stop="22041" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="219" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="399" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="0.98"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20227" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="523" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E279645" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22086" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATC</genome_strand>
        <mrna_strand>AAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTATGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGGATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265117" ref_strand="+" ref_description="SGN-E265117 [cLEI-2-A11]">
      <seq>aactagttcgagtttttttttttttttttttcacatcttaacttcaacatcaacttccacatggatatggaaaaccacaccttcagtccatagtagagaaaacctctccattgctattaaggctcatcaattttgccaataaaggaatggcgacaactcagctgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttaaatccataagtaatttaaaggttgcgtctttcgctcctttaaagcagaatagaaggtcgttccatggactcgtcgttaaggcttcaacagttgtatcccccaagtacacttcactcaaaccattgggtgatagagttctggtgaagattaagactgcagaggagaagagtgtaggcggcatcctgcttccagtatcagcacagtcgaagccgcaaggaggcgaggttgttgctgtcggggaaggtcattcaattggcaagactacggtggagattagtataaagaatggtacccacgtggtgtactcgaaatatgcgggaactgaactggagtttgatggatcaaaacacctgattttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="69882" stop="19974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22187" g_stop="22041" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.714"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21239" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="317" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20612" g_stop="20433" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="497" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20350" g_stop="20274" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="574" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E265117" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22187" e_stop="22041"/>
          <exon e_start="21411" e_stop="21239"/>
          <exon e_start="20612" e_stop="20433"/>
          <exon e_start="20350" e_stop="20274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCTTAGAAACTTCTAGGGTTTTGTTATCCTTAACAGCTCTACACATTTTATCTACAATAGTCTAAAGTCTAAACACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAGGTATATAGTTTGGTTTTTTTTCCTGTATAGCTCTTGTTTTATGTTTTGCTCGAAATGTAATAGCTGAGAAGGTAGGTAGAATCACCTTGATGGGTTCTTTTCACTGTTCCCAAATTTGTTGTTATACGACCATGTCAACTTTTCGTTTGTCAAAGTTGCATTTTGTAAATTAGAGTTTAAGAGCATCGGTAAATGTAATCTGCTGGGAATAGTTTTCCGAACCACTTACTTCCAACACAAAATTGGACTGCTTAAAGTAAGTTGCTAATTGAGTTAAGCTGACTGTTCTGATACTTTTGCTGTTTATGTAGCTTTGTCTGTCGTTGGTTAAAGCTACGTGATGAGGTTGTTATTGGGTGATTGCCTATTGTGTTCCTTTTTTCCAAGTTAGTGAGCTGAGTTCTGGCATTCATAGCCTGGATAAAATAGATATCTTCTGTCAAATATGTATTTGAAAATCAAAGCTGAATTCGTTGAATATTGTTATATCTGTTATTTTCTGCATTTGGTTTAGTTGATTGTATTAATCAATTTTAGTATCTAGTGGTTTTCAGAGTCTAGTTTTGTCTGTTGGGGAAGTTTTTATATTTATATGCTTCCTTGTTTTGTTGTTGTTGTTCGCACAGTACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAGGTAGTTCCGTAATCAATGTCATACTCAGCATGTCTTCTAAGCATGGTTGATCATTTTTTTAAACGGAACGTTTTACGTGTAGAATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAA</genome_strand>
        <mrna_strand>AACTAGTTCGAGTTTTTTTTTTTTTTTTTTTCACATCTTAACTTCA-ACATCAACTTCCACA-TGGATA-TGGAAAACCACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAAATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG..................................................................................AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAACACCTGATTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311852" ref_strand="+" ref_description="SGN-E311852 [cTOA-15-E10]">
      <seq>ggagaaaacctctccattgctattaaggctcgtcaattttgccaataaaggaatggctacaactcaactgaccgcgtcatccatctctgccaagggttttgcatcctttgaggggcttatatccataagtaatttaaaggttgcgtctttttctcctttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22389" stop="21000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22090" g_stop="22041" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21300" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="162" r_length="112" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E311852" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>162</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22090" e_stop="22041"/>
          <exon e_start="21411" e_stop="21300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAA</genome_strand>
        <mrna_strand>GGAGAAAACCTCTCCATTGCTATTAAGGCTCGTCAATTTTGCCAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGCTACAACTCAACTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTATATCCATAAGTAATTTAAAGGTTGCGTCTTTTTCTCCTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546373" ref_strand="+" ref_description="SGN-E546373 [TUS-69-L7]">
      <seq>gagaaaacctctccattgctattaaggctcatcaattttgccaataaaggtgcttccttttttatcatttgattcaaattcttgaatttttgtctttaaatttactattttttgcttctggtttgctgttcttgttaccacttctgttgtggggttcaaactttgtggttcttatctagagaaaacttctcctttgttattagtgaaaccaatctcccaataataaaggtgcaatctttattatcattgttgaaattcttgaatttttgtcttccaatttaggatattttttgcttctgctgtggtatttttgttgtggggttcttgatttagttgagaattttatggttcttatctgtaactgttcctctttttgcttctgctggtgctactctttatctttaattctatagcttgtcacaatttttactatttttgcttgtggggagctgctgtttaccctttttgtaagtgggaattatggtttagttcacaattatatgtttcttaccgtcagttttactcttttttgcttgtggggttccatttctgttgtagggttctggattacattcagaattcttgagtttttatctatggttgtactctttttgcttctgggatatgagtatattgactatttctgttgtggggtttcttgattgagctcagaaaggaatggcgacaactcagctgactgcgtcatccatttctgccaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22389" stop="21066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22089" g_stop="21366" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E546373" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22089" e_stop="21366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGT-AGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGG</genome_strand>
        <mrna_strand>GAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAATTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTTACCACTTCTGTTGTGGGGTTCA-AACTTTGTGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACCAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACA--ATTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAAGTGGGAATTATGGTTTAGTTCACAATTATATGTTTCTTACCGTCAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATATGAGTATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCAGAAAGGAATGGCGACAACTCAGCTGACTGCGTCATCCATTTCTGCCAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358793" ref_strand="+" ref_description="SGN-E358793 [cLHT-24-B11]">
      <seq>agaaaacctctccattgctattaaggctcatcaatggtgccaataaaggtgcttccttttttatcatttgattcaaattcttgaatttttgcctttaaattcactattttttgcttctggtttgctgctcttgttaccacttctgttgtggggttcaaactttgtggttcttatctagagaaaacttctcctttgttattagtgaaaccaatctcccaataataaaggtgcaatctttattatcattggtgaaatacttgaattttcgccttccaatttaggatattttttgctcctgctgtggtatttttgtggaggggttcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22388" stop="21460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22088" g_stop="21760" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E358793" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22088" e_stop="21760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGAT</genome_strand>
        <mrna_strand>AGAAAACCTCTCCATTGCTATTAAGGCTCATCAATGGTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAATTTTTGCCTTTAAATTCACTATTTTTTGCTTCTGGTTTGCTGCTCTTGTTACCACTTCTGTTGTGGGGTTCA-AACTTTGTGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACCAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGGTGAAATACTTGAATTTTCGCCTTCCAATTTAGGATATTTTTTGCTCCTGCTGTGGTATTTTTGTGGAGGGGTTCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305073" ref_strand="+" ref_description="SGN-E305073 [cLEX-10-P20]">
      <seq>aagattcatcaatttaacttcaatttcacaaaagaaaatttaaaatttgattaaaaatggtgaaacccaattcgaaagatactgaattttcacagtcgtcatcgtcgtcgttgtatcggggagtacggaagaggaaatgggggaaatgggtatcggaaattagattacctaatagtagagaaaggatttggttgggttcttatgatacgccggaaaaagctgctaaagcatttgacgccgcacttttttgtttgcggggtaaaggggctaatttcaatttcccggaaaatccgccggagattaggaacggaaggacgatgactccgtcggagattcaatcggcggcggcgcagtttgcgaataatacagaacccgaacttatccgggtcgggccaagggagaattcggatctttcttcttcctcatcggaaatatttcgagcggaatcaccgtcggtgtcagtttccgatagagtagaaagtgaaaagacggaaataaccttgggtaacgattttatcgatgtgtatcgggtggagtctagagtggaaagtgaaaagacggaaatgtccttggataacggatttgttgacatgttttcgtcgttaggaacggntaatgatatgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="30154" stop="31380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30454" g_stop="31080" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E305073" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30454" e_stop="31080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTCATCAATTTAACTTCAATTTCACAAAAGAAAATTTAAAATTTGATTAAAAATGGTGAAACCCAATTCGAAAGATACTGAATTTTCACAGTCGTCATCGTCGTCGTTGTATCGGGGAGTACGGAAGAGGAAATGGGGGAAATGGGTATCGGAAATTAGATTACCTAATAGTAGAGAAAGGATTTGGTTGGGTTCTTATGATACGCCGGAAAAAGCTGCTAAAGCATTTGACGCCGCACTTTTTTGTTTGCGGGGTAAAGGGGCTAATTTCAATTTCCCGGAAAATCCGCCGGAGATTAGGAACGGAAGGACGATGACTCCGTCGGAGATTCAATCGGCGGCGGCGCAGTTTGCGAATAATACAGAACCCGAACTTATCCGGGTCGGGCCAAGGGAGAATTCGGATCTTTCTTCTTCCTCATCGGAAATATTTCGAGCGGAATCACCGTCGGTGTCAGTTTCCGATAGAGTAGAAAGTGAAAAGACGGAAATAACCTTGGGTAACGATTTTATCGATGTGTATCGGGTGGAGTCTAGAGTGGAAAGTGAAAAGACGGAAATGTCCTTGGATAACGGATTTGTTGACATGTTTTCGTCGTTAGGAACGGTTAATGATATGTCTG</genome_strand>
        <mrna_strand>AAGATTCATCAATTTAACTTCAATTTCACAAAAGAAAATTTAAAATTTGATTAAAAATGGTGAAACCCAATTCGAAAGATACTGAATTTTCACAGTCGTCATCGTCGTCGTTGTATCGGGGAGTACGGAAGAGGAAATGGGGGAAATGGGTATCGGAAATTAGATTACCTAATAGTAGAGAAAGGATTTGGTTGGGTTCTTATGATACGCCGGAAAAAGCTGCTAAAGCATTTGACGCCGCACTTTTTTGTTTGCGGGGTAAAGGGGCTAATTTCAATTTCCCGGAAAATCCGCCGGAGATTAGGAACGGAAGGACGATGACTCCGTCGGAGATTCAATCGGCGGCGGCGCAGTTTGCGAATAATACAGAACCCGAACTTATCCGGGTCGGGCCAAGGGAGAATTCGGATCTTTCTTCTTCCTCATCGGAAATATTTCGAGCGGAATCACCGTCGGTGTCAGTTTCCGATAGAGTAGAAAGTGAAAAGACGGAAATAACCTTGGGTAACGATTTTATCGATGTGTATCGGGTGGAGTCTAGAGTGGAAAGTGAAAAGACGGAAATGTCCTTGGATAACGGATTTGTTGACATGTTTTCGTCGTTAGGAACGGNTAATGATATGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214416" ref_strand="+" ref_description="SGN-E214416 [cLEC-77-O4]">
      <seq>aagattcatcaatttaacttcaatttcacaaaagaaaatttaaaatttgattaaaaatggtgaaacccaattcgaaagatactgaattttcacagtcgtcatcgtcgtcgttgtatcggggagtacggaagaggaaatgggggaaatgggtatcggaaattagattacctaatagtagagaaaggatttggttgggttcttatgatacgccggaaaaagctgctaaagcatttgacgccgcacttttttgtttgcggggtaaaggggctaatttcaatttcccggaaaatccgccggagattaggaacggaaggacgatgactccgtcggagattcaatcggcggcggcgcagtttgcgaataatacagaacccgaacttatccgggtcgggccaagggagaattcggatctttcttcttcctcatcggaaatatttcgagcggaatcaccgtcggtgtcagtttccgatagagtagaaagtgaaaagacggaaataaccttgggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="30154" stop="31261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30454" g_stop="30961" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E214416" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30454" e_stop="30961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTCATCAATTTAACTTCAATTTCACAAAAGAAAATTTAAAATTTGATTAAAAATGGTGAAACCCAATTCGAAAGATACTGAATTTTCACAGTCGTCATCGTCGTCGTTGTATCGGGGAGTACGGAAGAGGAAATGGGGGAAATGGGTATCGGAAATTAGATTACCTAATAGTAGAGAAAGGATTTGGTTGGGTTCTTATGATACGCCGGAAAAAGCTGCTAAAGCATTTGACGCCGCACTTTTTTGTTTGCGGGGTAAAGGGGCTAATTTCAATTTCCCGGAAAATCCGCCGGAGATTAGGAACGGAAGGACGATGACTCCGTCGGAGATTCAATCGGCGGCGGCGCAGTTTGCGAATAATACAGAACCCGAACTTATCCGGGTCGGGCCAAGGGAGAATTCGGATCTTTCTTCTTCCTCATCGGAAATATTTCGAGCGGAATCACCGTCGGTGTCAGTTTCCGATAGAGTAGAAAGTGAAAAGACGGAAATAACCTTGGGTAA</genome_strand>
        <mrna_strand>AAGATTCATCAATTTAACTTCAATTTCACAAAAGAAAATTTAAAATTTGATTAAAAATGGTGAAACCCAATTCGAAAGATACTGAATTTTCACAGTCGTCATCGTCGTCGTTGTATCGGGGAGTACGGAAGAGGAAATGGGGGAAATGGGTATCGGAAATTAGATTACCTAATAGTAGAGAAAGGATTTGGTTGGGTTCTTATGATACGCCGGAAAAAGCTGCTAAAGCATTTGACGCCGCACTTTTTTGTTTGCGGGGTAAAGGGGCTAATTTCAATTTCCCGGAAAATCCGCCGGAGATTAGGAACGGAAGGACGATGACTCCGTCGGAGATTCAATCGGCGGCGGCGCAGTTTGCGAATAATACAGAACCCGAACTTATCCGGGTCGGGCCAAGGGAGAATTCGGATCTTTCTTCTTCCTCATCGGAAATATTTCGAGCGGAATCACCGTCGGTGTCAGTTTCCGATAGAGTAGAAAGTGAAAAGACGGAAATAACCTTGGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317278" ref_strand="+" ref_description="SGN-E317278 [cTOA-28-B8]">
      <seq>agattcatcaatttaacttcaatttcacaaaagaaaatttaaaatttgattaaaaatggtgaaacccaattcgaaagatactgaattttcacagtcgtcatcgtcgtcgttgtatcggggagtacggaagaggaaatgggggaaatgggtatcggaaattagattacctaatagtagagaaaggatttggttgggttcttatgatacgccggaaaaagctgctaaagcatttgacgccgcacttttttgtttgcggggtaaaggggctaatttcaatttcccggaaaatccgccggagattaggaacggaaggacgatgactccgtcggagattcaatcggcggcggcgcagtttgcgaataatacagaacccgaacttatccgggtcgggccaagggagaattcggatctttcttcttcctcatcggaaatatttcgagcggaatcaccgtcggtgtcagtttccgatagagtagaaagtgaaaagacggaaataaccttgggtaacgattttatcgatgtgtatcgggtggagtctagagtggaaagtgaaaagacggaaatgtccttggataacggatttgttgacatggtttcgtcgttaagaacgggtaatgatatgtctgattttggaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="30155" stop="31393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30455" g_stop="31093" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E317278" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30455" e_stop="31093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTCATCAATTTAACTTCAATTTCACAAAAGAAAATTTAAAATTTGATTAAAAATGGTGAAACCCAATTCGAAAGATACTGAATTTTCACAGTCGTCATCGTCGTCGTTGTATCGGGGAGTACGGAAGAGGAAATGGGGGAAATGGGTATCGGAAATTAGATTACCTAATAGTAGAGAAAGGATTTGGTTGGGTTCTTATGATACGCCGGAAAAAGCTGCTAAAGCATTTGACGCCGCACTTTTTTGTTTGCGGGGTAAAGGGGCTAATTTCAATTTCCCGGAAAATCCGCCGGAGATTAGGAACGGAAGGACGATGACTCCGTCGGAGATTCAATCGGCGGCGGCGCAGTTTGCGAATAATACAGAACCCGAACTTATCCGGGTCGGGCCAAGGGAGAATTCGGATCTTTCTTCTTCCTCATCGGAAATATTTCGAGCGGAATCACCGTCGGTGTCAGTTTCCGATAGAGTAGAAAGTGAAAAGACGGAAATAACCTTGGGTAACGATTTTATCGATGTGTATCGGGTGGAGTCTAGAGTGGAAAGTGAAAAGACGGAAATGTCCTTGGATAACGGATTTGTTGACATGTTTTCGTCGTTAGGAACGGTTAATGATATGTCTGATTTTGGAATTTT</genome_strand>
        <mrna_strand>AGATTCATCAATTTAACTTCAATTTCACAAAAGAAAATTTAAAATTTGATTAAAAATGGTGAAACCCAATTCGAAAGATACTGAATTTTCACAGTCGTCATCGTCGTCGTTGTATCGGGGAGTACGGAAGAGGAAATGGGGGAAATGGGTATCGGAAATTAGATTACCTAATAGTAGAGAAAGGATTTGGTTGGGTTCTTATGATACGCCGGAAAAAGCTGCTAAAGCATTTGACGCCGCACTTTTTTGTTTGCGGGGTAAAGGGGCTAATTTCAATTTCCCGGAAAATCCGCCGGAGATTAGGAACGGAAGGACGATGACTCCGTCGGAGATTCAATCGGCGGCGGCGCAGTTTGCGAATAATACAGAACCCGAACTTATCCGGGTCGGGCCAAGGGAGAATTCGGATCTTTCTTCTTCCTCATCGGAAATATTTCGAGCGGAATCACCGTCGGTGTCAGTTTCCGATAGAGTAGAAAGTGAAAAGACGGAAATAACCTTGGGTAACGATTTTATCGATGTGTATCGGGTGGAGTCTAGAGTGGAAAGTGAAAAGACGGAAATGTCCTTGGATAACGGATTTGTTGACATGGTTTCGTCGTTAAGAACGGGTAATGATATGTCTGATTTTGGAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317427" ref_strand="+" ref_description="SGN-E317427 [cTOA-28-J3]">
      <seq>agattcatcaatttaacttcaatttcacaaaagaaaatttaaaatttgattaaaaatggtgaaacccaattcgaaagatactgaattttcacagtcgtcatcgtcgtcgttgtatcggggagtacggaagaggaaatgggggaaatgggtatcggaaattagattacctaatagtagagaaaggatttggttgggttcttatgatacgccggaaaaagctgctaaagcatttgacgccgcacttttttgtttgcggggtaaaggggctaatttcaatttcccggaaaatccgccggagattaggaacggaaggacgatgactccgtcggagattcaatcggcggcggcgcagtttgcgaataatacagaacccgaacttatccgggtcgggccaagggagaattcggatctttcttcttcctcatcggaaatatttcgagcggaatcaccgtcggtgtcagtttccgatagagtagaaagtgaaaagacggaaataaccttgggtaacgattttatcgatgtgtatcgggtggagtctagagtggaaagtgaaagacnggaatgtccttggataacggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="30155" stop="31337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30455" g_stop="31037" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E317427" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30455" e_stop="31037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTCATCAATTTAACTTCAATTTCACAAAAGAAAATTTAAAATTTGATTAAAAATGGTGAAACCCAATTCGAAAGATACTGAATTTTCACAGTCGTCATCGTCGTCGTTGTATCGGGGAGTACGGAAGAGGAAATGGGGGAAATGGGTATCGGAAATTAGATTACCTAATAGTAGAGAAAGGATTTGGTTGGGTTCTTATGATACGCCGGAAAAAGCTGCTAAAGCATTTGACGCCGCACTTTTTTGTTTGCGGGGTAAAGGGGCTAATTTCAATTTCCCGGAAAATCCGCCGGAGATTAGGAACGGAAGGACGATGACTCCGTCGGAGATTCAATCGGCGGCGGCGCAGTTTGCGAATAATACAGAACCCGAACTTATCCGGGTCGGGCCAAGGGAGAATTCGGATCTTTCTTCTTCCTCATCGGAAATATTTCGAGCGGAATCACCGTCGGTGTCAGTTTCCGATAGAGTAGAAAGTGAAAAGACGGAAATAACCTTGGGTAACGATTTTATCGATGTGTATCGGGTGGAGTCTAGAGTGGAAAGTGAAAAGACGGAAATGTCCTTGGATAACGGATTT</genome_strand>
        <mrna_strand>AGATTCATCAATTTAACTTCAATTTCACAAAAGAAAATTTAAAATTTGATTAAAAATGGTGAAACCCAATTCGAAAGATACTGAATTTTCACAGTCGTCATCGTCGTCGTTGTATCGGGGAGTACGGAAGAGGAAATGGGGGAAATGGGTATCGGAAATTAGATTACCTAATAGTAGAGAAAGGATTTGGTTGGGTTCTTATGATACGCCGGAAAAAGCTGCTAAAGCATTTGACGCCGCACTTTTTTGTTTGCGGGGTAAAGGGGCTAATTTCAATTTCCCGGAAAATCCGCCGGAGATTAGGAACGGAAGGACGATGACTCCGTCGGAGATTCAATCGGCGGCGGCGCAGTTTGCGAATAATACAGAACCCGAACTTATCCGGGTCGGGCCAAGGGAGAATTCGGATCTTTCTTCTTCCTCATCGGAAATATTTCGAGCGGAATCACCGTCGGTGTCAGTTTCCGATAGAGTAGAAAGTGAAAAGACGGAAATAACCTTGGGTAACGATTTTATCGATGTGTATCGGGTGGAGTCTAGAGTGGAAAGTG-AAAGACNGGAATGTCCTTGGATAACGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346911" ref_strand="+" ref_description="SGN-E346911 [cTOF-32-F23]">
      <seq>atcaatttaacttcaatttcacaaaagaaaatttaaaatttgattaaaaatggtgaaacccaattcgaaagatactgaattttcacagtcgtcatcgtcgtcgttgtatcggggagtacggaagaggaaatgggggaaatgggtatcggaaattagattacctaatagtagagaaaggatttggttgggttcttatgatacgccggaaaaagctgctaaagcatttgacgccgcacttttttgtttgcggggtaaaggggctaatttcaatttcccggaaaatccgccggagattaggaacggaaggacgatgactccgtcggagattcaatcggcggcggcgcagtttgcgaataatacagaacccgaacttatccgggtcgggccaagggagaattcggatctttcttcttcctcatcggaaatatttcgagcggaatcaccgtcggtgtcagtttccgatagagtagaaagtgaaaagacggaaataaccttgggtaacgattttatcgatgtgtatcgggtggagtctagagtggaaagtgaaaagacggaaatgtccttggataacggatttgttgacatgttttcgtcgttaggaacggttaatgatatgtctgattttggaatttttccggggttcgatgacttatcgggtgaattttttataccaccaccatcgtcaccacaaccatcaccactgcaaatgcctaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="30161" stop="31476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30461" g_stop="31176" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E346911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30461" e_stop="31176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTTAACTTCAATTTCACAAAAGAAAATTTAAAATTTGATTAAAAATGGTGAAACCCAATTCGAAAGATACTGAATTTTCACAGTCGTCATCGTCGTCGTTGTATCGGGGAGTACGGAAGAGGAAATGGGGGAAATGGGTATCGGAAATTAGATTACCTAATAGTAGAGAAAGGATTTGGTTGGGTTCTTATGATACGCCGGAAAAAGCTGCTAAAGCATTTGACGCCGCACTTTTTTGTTTGCGGGGTAAAGGGGCTAATTTCAATTTCCCGGAAAATCCGCCGGAGATTAGGAACGGAAGGACGATGACTCCGTCGGAGATTCAATCGGCGGCGGCGCAGTTTGCGAATAATACAGAACCCGAACTTATCCGGGTCGGGCCAAGGGAGAATTCGGATCTTTCTTCTTCCTCATCGGAAATATTTCGAGCGGAATCACCGTCGGTGTCAGTTTCCGATAGAGTAGAAAGTGAAAAGACGGAAATAACCTTGGGTAACGATTTTATCGATGTGTATCGGGTGGAGTCTAGAGTGGAAAGTGAAAAGACGGAAATGTCCTTGGATAACGGATTTGTTGACATGTTTTCGTCGTTAGGAACGGTTAATGATATGTCTGATTTTGGAATTTTTCCGGGGTTCGATGACTTATCGGGTGAATTTTTTATACCACCACCATCGTCACCACAACCATCACCACTGCAAATGCCTAATT</genome_strand>
        <mrna_strand>ATCAATTTAACTTCAATTTCACAAAAGAAAATTTAAAATTTGATTAAAAATGGTGAAACCCAATTCGAAAGATACTGAATTTTCACAGTCGTCATCGTCGTCGTTGTATCGGGGAGTACGGAAGAGGAAATGGGGGAAATGGGTATCGGAAATTAGATTACCTAATAGTAGAGAAAGGATTTGGTTGGGTTCTTATGATACGCCGGAAAAAGCTGCTAAAGCATTTGACGCCGCACTTTTTTGTTTGCGGGGTAAAGGGGCTAATTTCAATTTCCCGGAAAATCCGCCGGAGATTAGGAACGGAAGGACGATGACTCCGTCGGAGATTCAATCGGCGGCGGCGCAGTTTGCGAATAATACAGAACCCGAACTTATCCGGGTCGGGCCAAGGGAGAATTCGGATCTTTCTTCTTCCTCATCGGAAATATTTCGAGCGGAATCACCGTCGGTGTCAGTTTCCGATAGAGTAGAAAGTGAAAAGACGGAAATAACCTTGGGTAACGATTTTATCGATGTGTATCGGGTGGAGTCTAGAGTGGAAAGTGAAAAGACGGAAATGTCCTTGGATAACGGATTTGTTGACATGTTTTCGTCGTTAGGAACGGTTAATGATATGTCTGATTTTGGAATTTTTCCGGGGTTCGATGACTTATCGGGTGAATTTTTTATACCACCACCATCGTCACCACAACCATCACCACTGCAAATGCCTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548161" ref_strand="-" ref_description="SGN-E548161 [TUS-58-K11](-)">
      <seq>tttcttttttttttttttttttttttttatcgattagtcaaaaaatacattctctttattatgtgtacaaatcacatatgttgtaacaattctagcaaccaaaaaaaatgtctagaattgtctacaaaatcatcaaatgaagttttaaaattcaaataagttctcttaatcctacttaatactaatttttagtactatttctaattttataaacttatattattaaccattaatgaatataatgtaacatttttatatccttcaaaaattccaaagaaatgaagtcccctgtgattgaaatccatcatagttcaaataattctcttcttctaatgattccaaattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="69869" stop="30871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32307" g_stop="32290" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.556"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32289" i_stop="31500" i_length="790">
            <donor d_prob="0.438" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31499" g_stop="31171" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="347" r_length="329" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E548161" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548161" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32307" e_stop="32290"/>
          <exon e_start="31499" e_stop="31171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTCAAGTATTTTGCAAAAAATAAACATATAATTTTATTACTTGTCGGGAGAAAGCTTTCAAATTCTGCAATTTTATTACTTGTCGGAATAAGCTTTCAAAAATTAAAATTTTTTTGACACGCTTGTTTGCTGTTAAAAATAAATAAATGTTAGGAGAGTGTGAGTCTACGAGGAGACATGATTTACTTTTCTTCTTTACTAGTTGGATGAAGTTGAAGCTTAATTTTACACCGTTTTCACCTTACAAAATCACTTGTTGTTAGATTAATAATTTTTTGGGGCAAACTGATAGTTAAGGTAATCAAGATTCAACTAATTTTGATCTCTAGTACTCCAATTTTATTTTTCATTATTAGAAGTAAAAGTTTCTGATCGACACCATTTTCTGCAGATTCAATAAGAAGAAAATATATCAATTGATAATTTTTTTTTATGTAAAATCAAATGAAAAGTAAATAAAATATAATTGTTAATTAAAAGAAAGACGATGCAAAATATTGTTGCTAAAAATTCACAATATTTTATATTATATGTATGTAAAATAGACAAAATTGATTTATTGAGGGATTTAAAGAGCTTTATTGAGAGTAGCGTAAACCGTGTGTATTTTTGTGAAAATTTTTGTTAATCTTTAATAAAATGTTGAAAATAGTCAGATTTTAAATAATAGAGAAATTTTCTGCTAAAAACATAATTTGAGGATATAGTTTAAAAATATTTTTAATTAATTTTTTTTATCCTAGTCAATCAATAAATTTCACTTTAATAATAAAGTAAATTTCTCTTTCGGACTAAAATAAAGTGATTTTCATATCGATTAGTCAAAAAATACATTCTCTTTATTATGTGTACAAATCACATATGTTGTAACAATTCTAGCAACCAAAAAAAATGTCTAGAATTGTCTACAAAATCATCAAATGAAGTTTTAAAATTCAAATAAGTTCTCTTAATCCTACTTAATACTAATTTTTAGTACTATTTCTAATTTTATAAACTTATATTATTAACCATTAATGAATATAATGTAACATTTTTATATCCTTCAAAAATTCCAAAGAAATGAAGTCCCCTGTGATTGAAATCCATCATAGTTCAAATAATTCTCTTCTTCTAATGATTCCAAATTAG</genome_strand>
        <mrna_strand>TTTCTTTTTTTTTTTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTATCGATTAGTCAAAAAATACATTCTCTTTATTATGTGTACAAATCACATATGTTGTAACAATTCTAGCAACCAAAAAAAATGTCTAGAATTGTCTACAAAATCATCAAATGAAGTTTTAAAATTCAAATAAGTTCTCTTAATCCTACTTAATACTAATTTTTAGTACTATTTCTAATTTTATAAACTTATATTATTAACCATTAATGAATATAATGTAACATTTTTATATCCTTCAAAAATTCCAAAGAAATGAAGTCCCCTGTGATTGAAATCCATCATAGTTCAAATAATTCTCTTCTTCTAATGATTCCAAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539244" ref_strand="+" ref_description="SGN-E539244 [TUS-58-O11]">
      <seq>ctaatttgaaatcattacaaaaagagaattatttgaactatgatggattgcaaacacaggggacttcgtttctttggaattgttgaaggatataaaaatgttacattatattcattaatgggtaataatatgaagtttataatattgaaatagtactcaaaattagtattaagtatgattaatataacttatataaattttaaaacttcatttgatgattttgtagacaattctagacattttttttggttgctagaattgttacaacatatgtgatttgtacacataataaagagaatgtattttttgactaatcgctggaactcaaaatgaggatgaccctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="30871" stop="31789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31171" g_stop="31487" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E539244" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31171" e_stop="31487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTTGGAATCATTAGAAGAAGAGAATTATTTGAACTATGATGGATTTCAATCACAGGGGACTTCATTTCTTTGGAATTTTTGAAGGATATAAAAATGTTACATTATATTCATTAATGGTTAATAATAT-AAGTTTATAAAATTAGAAATAGTACTAAAAATTAGTATTAAGTAGGATTAAGAGAACTTATTTGAATTTTAAAACTTCATTTGATGATTTTGTAGACAATTCTAGACATTTTTTTTGGTTGCTAGAATTGTTACAACATATGTGATTTGTACACATAATAAAGAGAATGTATTTTTTGACTAATCG</genome_strand>
        <mrna_strand>CTAATTTGAAATCATTACAAAAAGAGAATTATTTGAACTATGATGGATTGCAAACACAGGGGACTTCGTTTCTTTGGAATTGTTGAAGGATATAAAAATGTTACATTATATTCATTAATGGGTAATAATATGAAGTTTATAATATT-GAAATAGTACTCAAAATTAGTATTAAGTATGATTAATATAACTTATATAAATTTTAAAACTTCATTTGATGATTTTGTAGACAATTCTAGACATTTTTTTTGGTTGCTAGAATTGTTACAACATATGTGATTTGTACACATAATAAAGAGAATGTATTTTTTGACTAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277650" ref_strand="+" ref_description="SGN-E277650 [cLER-6-I14]">
      <seq>taatttggaatcattagaagaagagaattatttgaactatgatggatttcaatcacaggggacttcatttctttggaatttttgaaggatataaaaatgttacattatattcattaatggttaataatataagtttataaaattagaaatagtactaaaaattagtattaagtaggattaagagaacttatttgaattttaaaacttcatttgatgattttgtagacaattctagacattttttttggttgctagaattgttacaacatatgtgatttgtacacataataaagagaatgtattttttgactaatcgatnnaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="30872" stop="31789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31172" g_stop="31495" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="325" polyA_stop="346"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E277650" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31172" e_stop="31495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTGGAATCATTAGAAGAAGAGAATTATTTGAACTATGATGGATTTCAATCACAGGGGACTTCATTTCTTTGGAATTTTTGAAGGATATAAAAATGTTACATTATATTCATTAATGGTTAATAATATAAGTTTATAAAATTAGAAATAGTACTAAAAATTAGTATTAAGTAGGATTAAGAGAACTTATTTGAATTTTAAAACTTCATTTGATGATTTTGTAGACAATTCTAGACATTTTTTTTGGTTGCTAGAATTGTTACAACATATGTGATTTGTACACATAATAAAGAGAATGTATTTTTTGACTAATCGATATGAAA</genome_strand>
        <mrna_strand>TAATTTGGAATCATTAGAAGAAGAGAATTATTTGAACTATGATGGATTTCAATCACAGGGGACTTCATTTCTTTGGAATTTTTGAAGGATATAAAAATGTTACATTATATTCATTAATGGTTAATAATATAAGTTTATAAAATTAGAAATAGTACTAAAAATTAGTATTAAGTAGGATTAAGAGAACTTATTTGAATTTTAAAACTTCATTTGATGATTTTGTAGACAATTCTAGACATTTTTTTTGGTTGCTAGAATTGTTACAACATATGTGATTTGTACACATAATAAAGAGAATGTATTTTTTGACTAATCGATNNAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202313" ref_strand="+" ref_description="SGN-E202313 [cLEC-6-M12]">
      <seq>tttcttttcttcttttttttttttttttccaattttttttctttgatttttcttgatttcaatcaaaaccctaattaccctttcaattttgttatctttttttattttttttcaatttaaagtttgcatttatttttttttttggttgaagatgatgcaacagcaaaggctgaaacaacagcaaggattgatgcaacaatccctttatcatcctggtctcatagcatcccctcagatagagcccatcttgagtggaaatctgcctcctggatttgattcaactacttgcaggagtgtgtatgttggaaacatcagttctcaagtcacggaacaacttcttcaagaggttttctcaagtaccggtccccttgagggttgtaagcttataaggaaggacaagtcgtcctatgggtttgaggattattttgatcgccaatcagctgcgcttgctattgtgagcctcaatggaaggcaattgtttggacagtgtataaaagttaactgggcttatgccagtgctaaaagagaggacacatcaaatcattttagcatatttgttggtgatcttagtccggaggttacagattccacactgtttgcgtgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="34440" stop="38800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34739" g_stop="34972" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34973" i_stop="36523" i_length="1551">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36524" g_stop="36585" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="297" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36586" i_stop="37349" i_length="764">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37350" g_stop="37452" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="400" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37453" i_stop="38132" i_length="680">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38133" g_stop="38209" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="477" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38210" i_stop="38283" i_length="74">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38284" g_stop="38345" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="539" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38346" i_stop="38432" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38433" g_stop="38500" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="607" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E202313" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34739" e_stop="34972"/>
          <exon e_start="36524" e_stop="36585"/>
          <exon e_start="37350" e_stop="37452"/>
          <exon e_start="38133" e_stop="38209"/>
          <exon e_start="38284" e_stop="38345"/>
          <exon e_start="38433" e_stop="38500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTCTTTTCTTCTTTTTTTTTTTTTCCAATTTTTTTTCTTTGATTTTTCTTGATTTCAATCAAAACCCTAATTACCCTTTCAATTTTGTTATCTTTTTTTATTTTTTTTCAATTTAAAGTTTGCATTT-TTTTTTTTTTTGGTTGAAGATGATGCAACAGCAAAGGCTGAAACAACAGCAAGGATTGATGCAACAATCCCTTTATCATCCTGGTCTCATAGCATCCCCTCAGGTAAATTTTCCATTTTTGCCTTTTCAAAGTTTTCATTTTTTTTTTCCTTTTTTGCAATTTCATGTTTTGGTTTTAGTTGCTATTAGCTACTTAGCATTGTTGTTTTTGTTTGTGCTATGGTTATCCCATTATTTTTGTTGTTGTTGTTGTTACTGTTTTTGGTTATGTATGTGTTTTGTTTTTCATTTTGCATTGTTTTGGTGTTGTTATGCTTTCATTTCTGTATTCCCTTTTCTCAAATTTGCTTATTATAAGCTGAGCATTTATTGAAGCAACTTCTCTATGTGTTTTGAGTATCGGTCTAGGCGGTTAGGAAGGCTTGCTAGGCCAGTAACCGGACCAAAGAATGAATGTGTAATGATAGTGTTTTCACACCATGCTTAATAAATAATTGAATGTAGAAAGGGGATTGTACACTGAAGAAAAGTAGTCCATGGCCCTCTTTTAGAGTGTATAATGGGAGGTTGAATGTCAAACTGGTTCTCTCGAGTATACCCATTATCAAAAAATATACGTCACTTTGGGACACATGTGCATAGCCGCTGCGTGTGGCTAAAAGTCAACCAAAATCTGCATACTCACTATCTTTTGTGGGATTACATCCAGTTGGTTGTTACTGTTGTTTGTTTGTTTACGTAGGAGTTTGTGATTCTGGGTCATTTTTCATTGTTTCTTAGTTTGTTTGGCAGTTTCTCTTTGTTTATTCTTTCAAAGATTCATTTTTATCTATTATTCAAGGAGGTATTTGTCATCTGTAGGTATTGACCTCTATATATGTATCGGATTTTATATGTCCTCTTTTCGAAATGAATTTGTATGAAGTACTACTAAGCACTAGTTTTTCATACATGGCCAGCTGCTTTCACTTGTTCTAAAATCTGTTATGGCCATATGTGAAAGAGTAGTACTTTGTAGCATTTCATACAAATTCATTTTGTGTTAAAGGATTTTAATAGCATGCGGGGACATTACTGTGTCGTATGCCTTTAGTTTCTATTAACATTTTATCCATTGTTGATGTTTGGCTTTCGAAAAATTTAGGTGGTTATATCTCTGTTTGACATCTGGAGTTTCTATTCTCGTTGATACAAGTGGGGATAATCTGGTCTGGCTTCTAGTCATTAAAGGAGTAAAGTTGGAAGGCCACTGTTAGACTCCTCGGGTTGGGGGATGGGATACTGTTGTCATTTGAAAAGATTATCTTTTAGTTTTTGAAGTGTAGGATCCATACATGTTTAGATTTTCCTTTTCTTCTTTGTAGATGTAATTTCATGATTTCCTAAAATTATTTATTAAAAAACAAATTTTGTGAAATCCTTGGGATGGGGTATAGCAATTAACGGTCATTCTTATGTCCTTTCCTTCTTCCTTTCTCCCCCTCCAAATCTTTATGTAACTCGTATATGTGAAGAGTATTTTGTATGTTCACAATGCACACTGTCATTCTTTTATCGTACCCTAAATCACTGGTCATAAATTTTTACTCGACTGAATATTAGCATTTACTTCCTTTTTCACTGTCACTGACATTCTACTACTATTTTTTCATAGATAGAGCCCATCTTGAGTGGAAATCTGCCTCCTGGATTTGATTCAACTACTTGCAGGAGTGTGTGAGTGCCTTACACATTTTGTATTAATAATTATTTCTTGTCCAACTTTTTTGCAGTTATAACTTATAAGATACCTTTCTCGGCCTCATGGCCAAGATAAAGTGTAGTATATGTTCTTATCAGTCTTGAGGTTATAAGAGTGATAGTTTGAACTTTGAACAATCACGCGTCATGACTTACTTGCATTGGGAAATGATTAACTCGCTAATTACCCCTATGCTAGCTTATTTTATTCTTCTTAATTGTCTCGAATTACCTACGGAGTTTGAGGGGTTCAGTTTTATCCATGTAGTGAATAGCTCGGAATAAAATAAAGAAGGCCCGCTTCGTTTCAGAAGTCTTAAATGATTTGAGGCACAAAATCTGTCGTAGATGTGAACATGCCACCGAAGGGAAGACAGTGACCATGACTTGCCACTTGACATTCCCCAAAAAGAAGCCGAACACTAGCCTTTTCCCAATTAACCTATCAACTATTGGCGAAGCCTGAAGATGAAATTACAGCCTGATCATTTAATCATCGTTCCAAATTGCTGCTGCTTGGAAATAGAAAATGCCATTCTGGCAATCTACCCTTATGTGTGACAATATACTCATTTGTATCTCAATATTGATGCAAGCACCCACATACAAGTTGATAATTGTTCTTTTATCTATTCCTTCTATGAATTTTATTTCTAAAGCAAGCTGTTCTTATACTTGCATGAGGAATGGTTATTGTTGATATATGATAACCTGTTTGCTTTTGACATTATCAAATACAGGTATGTTGGAAACATCAGTTCTCAAGTCACGGAACAACTTCTTCAAGAGGTTTTCTCAAGTACCGGTCCCCTTGAGGGTTGTAAGCTTATAAGGAAGGACAAGGTATGATCTTGTTTTACTTGCTATAAAAATCTCACTCAACTACAATAGTACATTTGATCAATGTGATAGTTCTTTACCTCATCAAACATGTTATGTTTTTGTTATTTGGTATGTGTTATTTTATGGTACTTGTGCATTGGAGAAAGTCTAAATTGTGATGGGAGTTCAAAATTTACACATCACTTTTGAGCTCTTGTAGATGAAAGTATGACAGTCTGAATCCATTGTTGTTTTTCTTTTAACAAGTTATTCATCGCAATATTATTGGTCTTTTCCTTGATTTTCTGTTTCTGAGTTAACTTGTCTAGCCAGAACAAGGTAGATTGGGAAGGATGGGCAATAAACAAACCAAAACTGACCTAACTTGGCCTTGTAGCAGTCCTGTATTTCTTAGTATTGACTGTTGAATCTAGTTCAGAAGATATTTTTAAAGCGGAAAACATCATTGTTGGACTTGGATGTCTCGCAATTATTTTTAAAAAATTCAATCGTTAATTGTAATATATTATTAATTACATGCATTTTTTTGCAATTCAGGTTGCCCGTAGAATACTGATTCATAAATGTATAAACCAGTAGTTCATCTCATGTCTGAAAATGGTTTTAGATTATCCCTTTGGTTGTTGTGTGATTAGTAATTACTAGAGTGATAGATCGATGATGATTCTCTTAAAATGCAGTCGTCCTATGGGTTTGTGGATTATTTTGATCGCCAATCAGCTGCGCTTGCTATTGTGAGCCTCAATGGAAGGCAATTGTAAGAGCTTAAACAAAATATTTACTTCATAGTTCAATATTTGCTGCATGGTTTGGCTAACTTGTAAACTGCAGGTTTGGACAGTGTATAAAAGTTAACTGGGCTTATGCCAGTGCTAAAAGAGAGGACACATCAAGTACGTGTCTTACACACCTCCATTTTCGACCCTCTTAATTTTTTTATTATTTTGTCAAATACTAAAACTGTTACTTCTCACTTGCAGATCATTTTAGCATATTTGTTGGTGATCTTAGTCCGGAGGTTACAGATTCCACACTGTTTGCGTGCTTT</genome_strand>
        <mrna_strand>TTTCTTTTCTTCTTTTTTTTTTTTTTTTCCAATTTTTTTTCTTTGATTTTTCTTGATTTCAATCAAAACCCTAATTACCCTTTCAATTTTGTTATCTTTTTTTATTTTTTTTCAATTTAAAGTTTGCATTTATTTTTTTTTTTGGTTGAAGATGATGCAACAGCAAAGGCTGAAACAACAGCAAGGATTGATGCAACAATCCCTTTATCATCCTGGTCTCATAGCATCCCCTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAGCCCATCTTGAGTGGAAATCTGCCTCCTGGATTTGATTCAACTACTTGCAGGAGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTGGAAACATCAGTTCTCAAGTCACGGAACAACTTCTTCAAGAGGTTTTCTCAAGTACCGGTCCCCTTGAGGGTTGTAAGCTTATAAGGAAGGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTCCTATGGGTTTGAGGATTATTTTGATCGCCAATCAGCTGCGCTTGCTATTGTGAGCCTCAATGGAAGGCAATT..........................................................................GTTTGGACAGTGTATAAAAGTTAACTGGGCTTATGCCAGTGCTAAAAGAGAGGACACATCAA.......................................................................................ATCATTTTAGCATATTTGTTGGTGATCTTAGTCCGGAGGTTACAGATTCCACACTGTTTGCGTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546261" ref_strand="+" ref_description="SGN-E546261 [TUS-69-I14]">
      <seq>aatcatcgttccaaattgctgctgcttggaaatagaaaatgcattctggtatgttggaaacattagttctcaagtcacggaacaacttcttcaagaggttttctcaagtaccggtccccttgagggttgtaagcttataaggaaggacaagtcgtcctatgggtttgtggattattttgatcgccaatcagctgcacttgctattgtgagcctcaatggaaggcaattgtttggacagtgtataaaagttaactgggcttatgccagtgctaaaagagaggacacatcaaatcattttagcatatttgttggtgatcttagtccggaggttacagattccacactgtttgcgtgcttttcagtataccctagctgctcagatgcaagagtgatgtgggatcagaaaataggccggtctagagggtttgggtttgtttcctttcgtgatcagcaggaagcccaaagtgcaataaatgacttgaatggaaagtggcttggaagccgacaaatccgctgcaactgggcagcaaaaggtgctggagccggtaatgacaaccggagttcagatgctaaaagtgctgttgagttgacaactggaacatcagatgatggtcaactgaaggccaacgaagacgctccagaaaataatccgcagtacacaactgtatatgttggcaaccttgctcctgatgtcactaccattgacctccatcgttattttcatgctcttggggctgggtgtattgctgatgtccgtattcagcgagacagaagatttggctttttacgatatagcgatcatgctgaagcagctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="36801" stop="40669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37101" g_stop="37149" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37150" i_stop="37349" i_length="200">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37350" g_stop="37452" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="151" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37453" i_stop="38132" i_length="680">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38133" g_stop="38209" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="228" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38210" i_stop="38283" i_length="74">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38284" g_stop="38345" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="290" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38346" i_stop="38432" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38433" g_stop="38520" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="378" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38521" i_stop="38624" i_length="104">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38625" g_stop="38700" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="454" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38701" i_stop="38808" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38809" g_stop="38839" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="485" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="38840" i_stop="39563" i_length="724">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39564" g_stop="39683" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="605" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="39684" i_stop="40049" i_length="366">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="40050" g_stop="40135" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="691" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="40136" i_stop="40243" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="40244" g_stop="40369" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="817" r_length="126" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E546261" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37101" e_stop="37149"/>
          <exon e_start="37350" e_stop="37452"/>
          <exon e_start="38133" e_stop="38209"/>
          <exon e_start="38284" e_stop="38345"/>
          <exon e_start="38433" e_stop="38520"/>
          <exon e_start="38625" e_stop="38700"/>
          <exon e_start="38809" e_stop="38839"/>
          <exon e_start="39564" e_stop="39683"/>
          <exon e_start="40050" e_stop="40135"/>
          <exon e_start="40244" e_stop="40369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATCGTTCCAAATTGCTGCTGCTTGGAAATAGAAAATGCCATTCTGGCAATCTACCCTTATGTGTGACAATATACTCATTTGTATCTCAATATTGATGCAAGCACCCACATACAAGTTGATAATTGTTCTTTTATCTATTCCTTCTATGAATTTTATTTCTAAAGCAAGCTGTTCTTATACTTGCATGAGGAATGGTTATTGTTGATATATGATAACCTGTTTGCTTTTGACATTATCAAATACAGGTATGTTGGAAACATCAGTTCTCAAGTCACGGAACAACTTCTTCAAGAGGTTTTCTCAAGTACCGGTCCCCTTGAGGGTTGTAAGCTTATAAGGAAGGACAAGGTATGATCTTGTTTTACTTGCTATAAAAATCTCACTCAACTACAATAGTACATTTGATCAATGTGATAGTTCTTTACCTCATCAAACATGTTATGTTTTTGTTATTTGGTATGTGTTATTTTATGGTACTTGTGCATTGGAGAAAGTCTAAATTGTGATGGGAGTTCAAAATTTACACATCACTTTTGAGCTCTTGTAGATGAAAGTATGACAGTCTGAATCCATTGTTGTTTTTCTTTTAACAAGTTATTCATCGCAATATTATTGGTCTTTTCCTTGATTTTCTGTTTCTGAGTTAACTTGTCTAGCCAGAACAAGGTAGATTGGGAAGGATGGGCAATAAACAAACCAAAACTGACCTAACTTGGCCTTGTAGCAGTCCTGTATTTCTTAGTATTGACTGTTGAATCTAGTTCAGAAGATATTTTTAAAGCGGAAAACATCATTGTTGGACTTGGATGTCTCGCAATTATTTTTAAAAAATTCAATCGTTAATTGTAATATATTATTAATTACATGCATTTTTTTGCAATTCAGGTTGCCCGTAGAATACTGATTCATAAATGTATAAACCAGTAGTTCATCTCATGTCTGAAAATGGTTTTAGATTATCCCTTTGGTTGTTGTGTGATTAGTAATTACTAGAGTGATAGATCGATGATGATTCTCTTAAAATGCAGTCGTCCTATGGGTTTGTGGATTATTTTGATCGCCAATCAGCTGCGCTTGCTATTGTGAGCCTCAATGGAAGGCAATTGTAAGAGCTTAAACAAAATATTTACTTCATAGTTCAATATTTGCTGCATGGTTTGGCTAACTTGTAAACTGCAGGTTTGGACAGTGTATAAAAGTTAACTGGGCTTATGCCAGTGCTAAAAGAGAGGACACATCAAGTACGTGTCTTACACACCTCCATTTTCGACCCTCTTAATTTTTTTATTATTTTGTCAAATACTAAAACTGTTACTTCTCACTTGCAGATCATTTTAGCATATTTGTTGGTGATCTTAGTCCGGAGGTTACAGATTCCACACTGTTTGCGTGCTTTTCAGTATACCCTAGCTGCTCGTACGTCCACTCTCTGTTTATTTTGTACTATACACGGTCTGCTGGCATTCATATTCTGAAAATGGATGATAATACACAATGCTACATTAATGTTTTTCTTGTAGAGATGCAAGAGTGATGTGGGATCAGAAAATAGGCCGGTCTAGAGGGTTTGGGTTTGTTTCCTTTCGTGATCAGCAGGTATTAAGCTAGCTAAATACTATCTTACGATCTTTGCTATTATTGCTCCTCTTTACAACCCCCCTAAACAAAAAAAATGAAAGTACTCGTTATGTTTGTTTTGTGCAGGAAGCCCAAAGTGCAATAGATGACTTGAATGGTAAGATCAAATGTTTGGTCTATACTCTATATCTTGCTTCGCCATTATATTTGTATGCCGATCTCTACAATTTCATCAGATTAAGACCACGATGTCAGTAGTCATTTCTTTTAACCATCCATATTCTATTGGAAAAATGCAGTTGGGTTTATTTATATTACTTACGTGATACGTCGGTTAGATGGTTGACATATATGTGAATTGGGAAAAATGTAGTTGTGCCAGTTCCCCAAAAAAATGCGGTGGTGCCTATTTATATTTCATATGTTGGTTTGATGGTAGATATATATGTGAAACCACGGTGAGTGAAGGTGTTATAAGGGACGAGGCAGTCTTAATGACTGAAGTCAAGAAGGGACGAAAGTTTTTCAGGGATCCATGTAGACTTAGCGAGAGATACAGTGAATTTTATTGAAGACGCCCCTGGTTTTATTTATTACATATTGAAACTTACGGTGCGGACAAAGTTATCCCGGTATTATAGTTCTGGGTTCACCTCCCAATTGGGATAATAAAATAACACCAAGTTTGAGGTATTAATTTTGTCCCCGGATTAGTTACACCTTCAACCAAAGTATAAATTTTATTACAAACTTAGTCTTGGGATATCCCACCTTATCCCATGAACCAAATGACCCCTAATAGTGTATTCTATCGAGGACTCCTATGGTTTTCTTTCTTTTATTGTTACCTAATTGAATTTTTTTGTTTATTAAAACAAAAGGAAAGTGGCTTGGAAGCCGACAAATCCGCTGCAACTGGGCAGCAAAAGGTGCTGGAGCCAGTAATGACAACCGGAGTTCAGATGCTAAAAGTGCTGTTGAGTTGACAACTGGAACATCAGGTGGGTTATGTTACATGCTTATTTTGGCTACTACTGCTTTTGTCTTCTCCGCATACTATTTCAACTTCTGATGGTTGAGAGTCTCTACTCATTTATATTTTAAAACATCTGTGTGTTTCCAGTGTTTTCCGTTTCAATTAGCTTCAGATTTCATGTAGGATCTTTGAGTGTAGACCAGAGCACGTGCCATATGATATGAATTCCATGCTAATATACATAAAAATCTTCTATCAAGCTAATGTGAGGTTATGAACTATAAATATGAAATGAAGTGTTTAGATATGCTTGATAGTCGGCCTATCCTTGTTTATTATGAGAACTTGTATTACGAATATCTTCATATCATCTATTTTTTCATATATGTAGATGATGGTCAACTGAAGGCCAACGAAGACGCTCCAGAAAATAATCCGCAGTACACAACTGTATATGTTGGCAACCTTGCTCCTGATGTAAGTACCGGTTGGGACAGGGGGAGTATCACTTCAGCTTTAGTCGGGAGGAATTTATTTGCGATTATTTAGAATATCTTCTTGTTCTGACATCCAGTTATGTTCCAGGTCACTACCATTGACCTCCATCGTTATTTTCATGCTCTTGGGGCTGGTGTTATTGCTGATGTCCGTATTCAGCGAGACAGAGGATTTGGCTTTGTACGATACAGCAATCATGCTGAAGCAGCTCGA</genome_strand>
        <mrna_strand>AATCATCGTTCCAAATTGCTGCTGCTTGGAAATAGAAAATG-CATTCTG........................................................................................................................................................................................................GTATGTTGGAAACATTAGTTCTCAAGTCACGGAACAACTTCTTCAAGAGGTTTTCTCAAGTACCGGTCCCCTTGAGGGTTGTAAGCTTATAAGGAAGGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTCCTATGGGTTTGTGGATTATTTTGATCGCCAATCAGCTGCACTTGCTATTGTGAGCCTCAATGGAAGGCAATT..........................................................................GTTTGGACAGTGTATAAAAGTTAACTGGGCTTATGCCAGTGCTAAAAGAGAGGACACATCAA.......................................................................................ATCATTTTAGCATATTTGTTGGTGATCTTAGTCCGGAGGTTACAGATTCCACACTGTTTGCGTGCTTTTCAGTATACCCTAGCTGCTC........................................................................................................AGATGCAAGAGTGATGTGGGATCAGAAAATAGGCCGGTCTAGAGGGTTTGGGTTTGTTTCCTTTCGTGATCAGCAG............................................................................................................GAAGCCCAAAGTGCAATAAATGACTTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGCTTGGAAGCCGACAAATCCGCTGCAACTGGGCAGCAAAAGGTGCTGGAGCCGGTAATGACAACCGGAGTTCAGATGCTAAAAGTGCTGTTGAGTTGACAACTGGAACATCAG..............................................................................................................................................................................................................................................................................................................................................................................ATGATGGTCAACTGAAGGCCAACGAAGACGCTCCAGAAAATAATCCGCAGTACACAACTGTATATGTTGGCAACCTTGCTCCTGAT............................................................................................................GTCACTACCATTGACCTCCATCGTTATTTTCATGCTCTTGGGGCTGGGTGTATTGCTGATGTCCGTATTCAGCGAGACAGAAGATTTGGCTTTTTACGATATAGCGATCATGCTGAAGCAGCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358629" ref_strand="+" ref_description="SGN-E358629 [cLHT-22-K11]">
      <seq>atcatcgctcttaattgctgctgcttggaaatagaaggggcattctggtatgttggaaacattagttctcaagtcacggaacaacttcttcaagaggttttctcaagtaccggtccccttgagggttgtaagcttataaggaaggacaagtcgtcctatgggtttgtggattattttgatcgccaatcagctgcacttgctattgtgagcctcaatggaaggcaattgtttggacagtgtataaaagttaactgggcttatgccagtgctaaaagagaggacacatcaaatcattttagcatatttgttggtgatcttagtccggaggttacagattccacactgtttgcgtgcttttcagtataccctagctgctcagatgcaagagtgatgtgggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="36802" stop="38947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37102" g_stop="37149" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37150" i_stop="37349" i_length="200">
            <donor d_prob="0.000" d_score="0.85"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37350" g_stop="37452" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="150" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37453" i_stop="38132" i_length="680">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38133" g_stop="38209" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="227" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38210" i_stop="38283" i_length="74">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38284" g_stop="38345" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="289" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38346" i_stop="38432" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38433" g_stop="38520" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="377" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38521" i_stop="38624" i_length="104">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38625" g_stop="38647" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="400" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E358629" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37102" e_stop="37149"/>
          <exon e_start="37350" e_stop="37452"/>
          <exon e_start="38133" e_stop="38209"/>
          <exon e_start="38284" e_stop="38345"/>
          <exon e_start="38433" e_stop="38520"/>
          <exon e_start="38625" e_stop="38647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCGTTCCAAATTGCTGCTGCTTGGAAATAGAAAATGCCATTCTGGCAATCTACCCTTATGTGTGACAATATACTCATTTGTATCTCAATATTGATGCAAGCACCCACATACAAGTTGATAATTGTTCTTTTATCTATTCCTTCTATGAATTTTATTTCTAAAGCAAGCTGTTCTTATACTTGCATGAGGAATGGTTATTGTTGATATATGATAACCTGTTTGCTTTTGACATTATCAAATACAGGTATGTTGGAAACATCAGTTCTCAAGTCACGGAACAACTTCTTCAAGAGGTTTTCTCAAGTACCGGTCCCCTTGAGGGTTGTAAGCTTATAAGGAAGGACAAGGTATGATCTTGTTTTACTTGCTATAAAAATCTCACTCAACTACAATAGTACATTTGATCAATGTGATAGTTCTTTACCTCATCAAACATGTTATGTTTTTGTTATTTGGTATGTGTTATTTTATGGTACTTGTGCATTGGAGAAAGTCTAAATTGTGATGGGAGTTCAAAATTTACACATCACTTTTGAGCTCTTGTAGATGAAAGTATGACAGTCTGAATCCATTGTTGTTTTTCTTTTAACAAGTTATTCATCGCAATATTATTGGTCTTTTCCTTGATTTTCTGTTTCTGAGTTAACTTGTCTAGCCAGAACAAGGTAGATTGGGAAGGATGGGCAATAAACAAACCAAAACTGACCTAACTTGGCCTTGTAGCAGTCCTGTATTTCTTAGTATTGACTGTTGAATCTAGTTCAGAAGATATTTTTAAAGCGGAAAACATCATTGTTGGACTTGGATGTCTCGCAATTATTTTTAAAAAATTCAATCGTTAATTGTAATATATTATTAATTACATGCATTTTTTTGCAATTCAGGTTGCCCGTAGAATACTGATTCATAAATGTATAAACCAGTAGTTCATCTCATGTCTGAAAATGGTTTTAGATTATCCCTTTGGTTGTTGTGTGATTAGTAATTACTAGAGTGATAGATCGATGATGATTCTCTTAAAATGCAGTCGTCCTATGGGTTTGTGGATTATTTTGATCGCCAATCAGCTGCGCTTGCTATTGTGAGCCTCAATGGAAGGCAATTGTAAGAGCTTAAACAAAATATTTACTTCATAGTTCAATATTTGCTGCATGGTTTGGCTAACTTGTAAACTGCAGGTTTGGACAGTGTATAAAAGTTAACTGGGCTTATGCCAGTGCTAAAAGAGAGGACACATCAAGTACGTGTCTTACACACCTCCATTTTCGACCCTCTTAATTTTTTTATTATTTTGTCAAATACTAAAACTGTTACTTCTCACTTGCAGATCATTTTAGCATATTTGTTGGTGATCTTAGTCCGGAGGTTACAGATTCCACACTGTTTGCGTGCTTTTCAGTATACCCTAGCTGCTCGTACGTCCACTCTCTGTTTATTTTGTACTATACACGGTCTGCTGGCATTCATATTCTGAAAATGGATGATAATACACAATGCTACATTAATGTTTTTCTTGTAGAGATGCAAGAGTGATGTGGGATC</genome_strand>
        <mrna_strand>ATCATCGCTCTTAATTGCTGCTGCTTGGAAATAG-AAGGGGCATTCTG........................................................................................................................................................................................................GTATGTTGGAAACATTAGTTCTCAAGTCACGGAACAACTTCTTCAAGAGGTTTTCTCAAGTACCGGTCCCCTTGAGGGTTGTAAGCTTATAAGGAAGGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTCCTATGGGTTTGTGGATTATTTTGATCGCCAATCAGCTGCACTTGCTATTGTGAGCCTCAATGGAAGGCAATT..........................................................................GTTTGGACAGTGTATAAAAGTTAACTGGGCTTATGCCAGTGCTAAAAGAGAGGACACATCAA.......................................................................................ATCATTTTAGCATATTTGTTGGTGATCTTAGTCCGGAGGTTACAGATTCCACACTGTTTGCGTGCTTTTCAGTATACCCTAGCTGCTC........................................................................................................AGATGCAAGAGTGATGTGGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249018" ref_strand="+" ref_description="SGN-E249018 [cLEF-49-A4]">
      <seq>acaacttcttcaagaggttttctcaagtaccggtccccttgagggttgtaagcttataaggaaggacaagtcgtcctatgggtttgtggattattttgatcgccaatcagctgcgcttgctattgtgagcctcaatggaaggcaattgtttggacagtgtataaaagttaactgggcttatgccagtgctaaaagagaggacacatcaaatcattttagcatatttgttggtgatcttagtccggaggttacagattccacactgtttgcgtgcttttcagtataccctagctgctcagatgcaagagtgatgtgggatcagaaaataggccggtctagagggtttgggtttgtttcctttcgtgatcagcaggaagcccaaagtgcaatagatgacttgaatggaaagtggcttggaagccgacaaatccgctgcaactgggcagcaaaaggtgctggagccagtaatgacaaccggagttcagatgctaaaagtgctgttgagttgacaactggaacatcagatgatggtcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="37083" stop="39986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37383" g_stop="37452" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37453" i_stop="38132" i_length="680">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38133" g_stop="38209" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="147" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38210" i_stop="38283" i_length="74">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38284" g_stop="38345" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="209" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38346" i_stop="38432" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38433" g_stop="38520" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="297" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38521" i_stop="38624" i_length="104">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38625" g_stop="38700" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="373" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38701" i_stop="38808" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38809" g_stop="38839" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="404" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38840" i_stop="39563" i_length="724">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39564" g_stop="39683" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="524" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E249018" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37383" e_stop="37452"/>
          <exon e_start="38133" e_stop="38209"/>
          <exon e_start="38284" e_stop="38345"/>
          <exon e_start="38433" e_stop="38520"/>
          <exon e_start="38625" e_stop="38700"/>
          <exon e_start="38809" e_stop="38839"/>
          <exon e_start="39564" e_stop="39683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTTCTTCAAGAGGTTTTCTCAAGTACCGGTCCCCTTGAGGGTTGTAAGCTTATAAGGAAGGACAAGGTATGATCTTGTTTTACTTGCTATAAAAATCTCACTCAACTACAATAGTACATTTGATCAATGTGATAGTTCTTTACCTCATCAAACATGTTATGTTTTTGTTATTTGGTATGTGTTATTTTATGGTACTTGTGCATTGGAGAAAGTCTAAATTGTGATGGGAGTTCAAAATTTACACATCACTTTTGAGCTCTTGTAGATGAAAGTATGACAGTCTGAATCCATTGTTGTTTTTCTTTTAACAAGTTATTCATCGCAATATTATTGGTCTTTTCCTTGATTTTCTGTTTCTGAGTTAACTTGTCTAGCCAGAACAAGGTAGATTGGGAAGGATGGGCAATAAACAAACCAAAACTGACCTAACTTGGCCTTGTAGCAGTCCTGTATTTCTTAGTATTGACTGTTGAATCTAGTTCAGAAGATATTTTTAAAGCGGAAAACATCATTGTTGGACTTGGATGTCTCGCAATTATTTTTAAAAAATTCAATCGTTAATTGTAATATATTATTAATTACATGCATTTTTTTGCAATTCAGGTTGCCCGTAGAATACTGATTCATAAATGTATAAACCAGTAGTTCATCTCATGTCTGAAAATGGTTTTAGATTATCCCTTTGGTTGTTGTGTGATTAGTAATTACTAGAGTGATAGATCGATGATGATTCTCTTAAAATGCAGTCGTCCTATGGGTTTGTGGATTATTTTGATCGCCAATCAGCTGCGCTTGCTATTGTGAGCCTCAATGGAAGGCAATTGTAAGAGCTTAAACAAAATATTTACTTCATAGTTCAATATTTGCTGCATGGTTTGGCTAACTTGTAAACTGCAGGTTTGGACAGTGTATAAAAGTTAACTGGGCTTATGCCAGTGCTAAAAGAGAGGACACATCAAGTACGTGTCTTACACACCTCCATTTTCGACCCTCTTAATTTTTTTATTATTTTGTCAAATACTAAAACTGTTACTTCTCACTTGCAGATCATTTTAGCATATTTGTTGGTGATCTTAGTCCGGAGGTTACAGATTCCACACTGTTTGCGTGCTTTTCAGTATACCCTAGCTGCTCGTACGTCCACTCTCTGTTTATTTTGTACTATACACGGTCTGCTGGCATTCATATTCTGAAAATGGATGATAATACACAATGCTACATTAATGTTTTTCTTGTAGAGATGCAAGAGTGATGTGGGATCAGAAAATAGGCCGGTCTAGAGGGTTTGGGTTTGTTTCCTTTCGTGATCAGCAGGTATTAAGCTAGCTAAATACTATCTTACGATCTTTGCTATTATTGCTCCTCTTTACAACCCCCCTAAACAAAAAAAATGAAAGTACTCGTTATGTTTGTTTTGTGCAGGAAGCCCAAAGTGCAATAGATGACTTGAATGGTAAGATCAAATGTTTGGTCTATACTCTATATCTTGCTTCGCCATTATATTTGTATGCCGATCTCTACAATTTCATCAGATTAAGACCACGATGTCAGTAGTCATTTCTTTTAACCATCCATATTCTATTGGAAAAATGCAGTTGGGTTTATTTATATTACTTACGTGATACGTCGGTTAGATGGTTGACATATATGTGAATTGGGAAAAATGTAGTTGTGCCAGTTCCCCAAAAAAATGCGGTGGTGCCTATTTATATTTCATATGTTGGTTTGATGGTAGATATATATGTGAAACCACGGTGAGTGAAGGTGTTATAAGGGACGAGGCAGTCTTAATGACTGAAGTCAAGAAGGGACGAAAGTTTTTCAGGGATCCATGTAGACTTAGCGAGAGATACAGTGAATTTTATTGAAGACGCCCCTGGTTTTATTTATTACATATTGAAACTTACGGTGCGGACAAAGTTATCCCGGTATTATAGTTCTGGGTTCACCTCCCAATTGGGATAATAAAATAACACCAAGTTTGAGGTATTAATTTTGTCCCCGGATTAGTTACACCTTCAACCAAAGTATAAATTTTATTACAAACTTAGTCTTGGGATATCCCACCTTATCCCATGAACCAAATGACCCCTAATAGTGTATTCTATCGAGGACTCCTATGGTTTTCTTTCTTTTATTGTTACCTAATTGAATTTTTTTGTTTATTAAAACAAAAGGAAAGTGGCTTGGAAGCCGACAAATCCGCTGCAACTGGGCAGCAAAAGGTGCTGGAGCCAGTAATGACAACCGGAGTTCAGATGCTAAAAGTGCTGTTGAGTTGACAACTGGAACATCAG</genome_strand>
        <mrna_strand>ACAACTTCTTCAAGAGGTTTTCTCAAGTACCGGTCCCCTTGAGGGTTGTAAGCTTATAAGGAAGGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTCCTATGGGTTTGTGGATTATTTTGATCGCCAATCAGCTGCGCTTGCTATTGTGAGCCTCAATGGAAGGCAATT..........................................................................GTTTGGACAGTGTATAAAAGTTAACTGGGCTTATGCCAGTGCTAAAAGAGAGGACACATCAA.......................................................................................ATCATTTTAGCATATTTGTTGGTGATCTTAGTCCGGAGGTTACAGATTCCACACTGTTTGCGTGCTTTTCAGTATACCCTAGCTGCTC........................................................................................................AGATGCAAGAGTGATGTGGGATCAGAAAATAGGCCGGTCTAGAGGGTTTGGGTTTGTTTCCTTTCGTGATCAGCAG............................................................................................................GAAGCCCAAAGTGCAATAGATGACTTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGCTTGGAAGCCGACAAATCCGCTGCAACTGGGCAGCAAAAGGTGCTGGAGCCAGTAATGACAACCGGAGTTCAGATGCTAAAAGTGCTGTTGAGTTGACAACTGGAACATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275743" ref_strand="+" ref_description="SGN-E275743 [cLEN-18-A19]">
      <seq>agcgtcctatgggtttgtggattattttgatcgccaatcagctgcgcttgctattgtgagcctcaatggaaggcaattgtttggacagtgtataaaagttaactgggcttatgccagtgctaaaagagaggacacatcaaatcattttagcatatttgttggtgatcttagtccggaggttacagattccacactgtttgcgtgcttttcagtataccctagctgctcagatgcaagagtgatgtgggatcagaaaataggccggtctagagggtttgggtttgtttcctttcgtgatcagcaggaagcccaaagtgcaatagatgacttgaatggaaagtggcttggaagccgacaaatccgctgcaactgggcagcaaaaggtgctggagccagtaatgacaaccggagttcagatgctaaaagtgctgttgagttgacaactggaacatcagatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="37831" stop="39986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38131" g_stop="38209" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38210" i_stop="38283" i_length="74">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38284" g_stop="38345" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="140" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38346" i_stop="38432" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38433" g_stop="38520" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="228" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38521" i_stop="38624" i_length="104">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38625" g_stop="38700" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="304" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38701" i_stop="38808" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38809" g_stop="38839" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="335" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38840" i_stop="39563" i_length="724">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39564" g_stop="39683" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="455" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E275743" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38131" e_stop="38209"/>
          <exon e_start="38284" e_stop="38345"/>
          <exon e_start="38433" e_stop="38520"/>
          <exon e_start="38625" e_stop="38700"/>
          <exon e_start="38809" e_stop="38839"/>
          <exon e_start="39564" e_stop="39683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCGTCCTATGGGTTTGTGGATTATTTTGATCGCCAATCAGCTGCGCTTGCTATTGTGAGCCTCAATGGAAGGCAATTGTAAGAGCTTAAACAAAATATTTACTTCATAGTTCAATATTTGCTGCATGGTTTGGCTAACTTGTAAACTGCAGGTTTGGACAGTGTATAAAAGTTAACTGGGCTTATGCCAGTGCTAAAAGAGAGGACACATCAAGTACGTGTCTTACACACCTCCATTTTCGACCCTCTTAATTTTTTTATTATTTTGTCAAATACTAAAACTGTTACTTCTCACTTGCAGATCATTTTAGCATATTTGTTGGTGATCTTAGTCCGGAGGTTACAGATTCCACACTGTTTGCGTGCTTTTCAGTATACCCTAGCTGCTCGTACGTCCACTCTCTGTTTATTTTGTACTATACACGGTCTGCTGGCATTCATATTCTGAAAATGGATGATAATACACAATGCTACATTAATGTTTTTCTTGTAGAGATGCAAGAGTGATGTGGGATCAGAAAATAGGCCGGTCTAGAGGGTTTGGGTTTGTTTCCTTTCGTGATCAGCAGGTATTAAGCTAGCTAAATACTATCTTACGATCTTTGCTATTATTGCTCCTCTTTACAACCCCCCTAAACAAAAAAAATGAAAGTACTCGTTATGTTTGTTTTGTGCAGGAAGCCCAAAGTGCAATAGATGACTTGAATGGTAAGATCAAATGTTTGGTCTATACTCTATATCTTGCTTCGCCATTATATTTGTATGCCGATCTCTACAATTTCATCAGATTAAGACCACGATGTCAGTAGTCATTTCTTTTAACCATCCATATTCTATTGGAAAAATGCAGTTGGGTTTATTTATATTACTTACGTGATACGTCGGTTAGATGGTTGACATATATGTGAATTGGGAAAAATGTAGTTGTGCCAGTTCCCCAAAAAAATGCGGTGGTGCCTATTTATATTTCATATGTTGGTTTGATGGTAGATATATATGTGAAACCACGGTGAGTGAAGGTGTTATAAGGGACGAGGCAGTCTTAATGACTGAAGTCAAGAAGGGACGAAAGTTTTTCAGGGATCCATGTAGACTTAGCGAGAGATACAGTGAATTTTATTGAAGACGCCCCTGGTTTTATTTATTACATATTGAAACTTACGGTGCGGACAAAGTTATCCCGGTATTATAGTTCTGGGTTCACCTCCCAATTGGGATAATAAAATAACACCAAGTTTGAGGTATTAATTTTGTCCCCGGATTAGTTACACCTTCAACCAAAGTATAAATTTTATTACAAACTTAGTCTTGGGATATCCCACCTTATCCCATGAACCAAATGACCCCTAATAGTGTATTCTATCGAGGACTCCTATGGTTTTCTTTCTTTTATTGTTACCTAATTGAATTTTTTTGTTTATTAAAACAAAAGGAAAGTGGCTTGGAAGCCGACAAATCCGCTGCAACTGGGCAGCAAAAGGTGCTGGAGCCAGTAATGACAACCGGAGTTCAGATGCTAAAAGTGCTGTTGAGTTGACAACTGGAACATCAG</genome_strand>
        <mrna_strand>AG-CGTCCTATGGGTTTGTGGATTATTTTGATCGCCAATCAGCTGCGCTTGCTATTGTGAGCCTCAATGGAAGGCAATT..........................................................................GTTTGGACAGTGTATAAAAGTTAACTGGGCTTATGCCAGTGCTAAAAGAGAGGACACATCAA.......................................................................................ATCATTTTAGCATATTTGTTGGTGATCTTAGTCCGGAGGTTACAGATTCCACACTGTTTGCGTGCTTTTCAGTATACCCTAGCTGCTC........................................................................................................AGATGCAAGAGTGATGTGGGATCAGAAAATAGGCCGGTCTAGAGGGTTTGGGTTTGTTTCCTTTCGTGATCAGCAG............................................................................................................GAAGCCCAAAGTGCAATAGATGACTTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGCTTGGAAGCCGACAAATCCGCTGCAACTGGGCAGCAAAAGGTGCTGGAGCCAGTAATGACAACCGGAGTTCAGATGCTAAAAGTGCTGTTGAGTTGACAACTGGAACATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247070" ref_strand="+" ref_description="SGN-E247070 [cLEF-41-N5]">
      <seq>ttttgatcgccaatcagctgcgcttgctattgtgagcctcaatggaaggcaattgtttggacagtgtataaaagttaactgggcttatgccagtgctaaaagagaggacaccatcaaatcattttagcatatttgttggtgatcttagtccggaggttacagattccacactgtttgcgtgcttttcagtataccctagctgctcagaatgcaagagtgatgtgggatcagaaaataggccggtctagagggtttgggtttgtttcctttcgtgatcagcaggaagcccaaagtgcaatagatgacttgaatggaaagtggcttggaagccgacaaatccgctgcaactgggcagcaaaaggtgctggagccagtaatgacaaccggagttcagaagctaaaagtgctgttgagttgacaactggaacatcagatgatggtcaactgaaggccaacgaagaacgctccagaaaataatccgcagtacacaactgtatatgttggcaaccttgctcctgatgtcactaccattgacctccatcgntattttcatgctcttggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="37856" stop="40587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38156" g_stop="38209" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38210" i_stop="38283" i_length="74">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38284" g_stop="38345" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="117" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38346" i_stop="38432" i_length="87">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38433" g_stop="38520" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="205" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38521" i_stop="38624" i_length="104">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38625" g_stop="38700" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="282" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38701" i_stop="38808" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38809" g_stop="38839" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="313" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38840" i_stop="39563" i_length="724">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39564" g_stop="39683" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="433" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39684" i_stop="40049" i_length="366">
            <donor d_prob="0.849" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40050" g_stop="40135" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="520" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40136" i_stop="40243" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40244" g_stop="40287" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="564" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E247070" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38156" e_stop="38209"/>
          <exon e_start="38284" e_stop="38345"/>
          <exon e_start="38433" e_stop="38520"/>
          <exon e_start="38625" e_stop="38700"/>
          <exon e_start="38809" e_stop="38839"/>
          <exon e_start="39564" e_stop="39683"/>
          <exon e_start="40050" e_stop="40135"/>
          <exon e_start="40244" e_stop="40287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGATCGCCAATCAGCTGCGCTTGCTATTGTGAGCCTCAATGGAAGGCAATTGTAAGAGCTTAAACAAAATATTTACTTCATAGTTCAATATTTGCTGCATGGTTTGGCTAACTTGTAAACTGCAGGTTTGGACAGTGTATAAAAGTTAACTGGGCTTATGCCAGTGCTAAAAGAGAGGACA-CATCAAGTACGTGTCTTACACACCTCCATTTTCGACCCTCTTAATTTTTTTATTATTTTGTCAAATACTAAAACTGTTACTTCTCACTTGCAGATCATTTTAGCATATTTGTTGGTGATCTTAGTCCGGAGGTTACAGATTCCACACTGTTTGCGTGCTTTTCAGTATACCCTAGCTGCTCGTACGTCCACTCTCTGTTTATTTTGTACTATACACGGTCTGCTGGCATTCATATTCTGAAAATGGATGATAATACACAATGCTACATTAATGTTTTTCTTGTAGAG-ATGCAAGAGTGATGTGGGATCAGAAAATAGGCCGGTCTAGAGGGTTTGGGTTTGTTTCCTTTCGTGATCAGCAGGTATTAAGCTAGCTAAATACTATCTTACGATCTTTGCTATTATTGCTCCTCTTTACAACCCCCCTAAACAAAAAAAATGAAAGTACTCGTTATGTTTGTTTTGTGCAGGAAGCCCAAAGTGCAATAGATGACTTGAATGGTAAGATCAAATGTTTGGTCTATACTCTATATCTTGCTTCGCCATTATATTTGTATGCCGATCTCTACAATTTCATCAGATTAAGACCACGATGTCAGTAGTCATTTCTTTTAACCATCCATATTCTATTGGAAAAATGCAGTTGGGTTTATTTATATTACTTACGTGATACGTCGGTTAGATGGTTGACATATATGTGAATTGGGAAAAATGTAGTTGTGCCAGTTCCCCAAAAAAATGCGGTGGTGCCTATTTATATTTCATATGTTGGTTTGATGGTAGATATATATGTGAAACCACGGTGAGTGAAGGTGTTATAAGGGACGAGGCAGTCTTAATGACTGAAGTCAAGAAGGGACGAAAGTTTTTCAGGGATCCATGTAGACTTAGCGAGAGATACAGTGAATTTTATTGAAGACGCCCCTGGTTTTATTTATTACATATTGAAACTTACGGTGCGGACAAAGTTATCCCGGTATTATAGTTCTGGGTTCACCTCCCAATTGGGATAATAAAATAACACCAAGTTTGAGGTATTAATTTTGTCCCCGGATTAGTTACACCTTCAACCAAAGTATAAATTTTATTACAAACTTAGTCTTGGGATATCCCACCTTATCCCATGAACCAAATGACCCCTAATAGTGTATTCTATCGAGGACTCCTATGGTTTTCTTTCTTTTATTGTTACCTAATTGAATTTTTTTGTTTATTAAAACAAAAGGAAAGTGGCTTGGAAGCCGACAAATCCGCTGCAACTGGGCAGCAAAAGGTGCTGGAGCCAGTAATGACAACCGGAGTTCAGATGCTAAAAGTGCTGTTGAGTTGACAACTGGAACATCAGGTGGGTTATGTTACATGCTTATTTTGGCTACTACTGCTTTTGTCTTCTCCGCATACTATTTCAACTTCTGATGGTTGAGAGTCTCTACTCATTTATATTTTAAAACATCTGTGTGTTTCCAGTGTTTTCCGTTTCAATTAGCTTCAGATTTCATGTAGGATCTTTGAGTGTAGACCAGAGCACGTGCCATATGATATGAATTCCATGCTAATATACATAAAAATCTTCTATCAAGCTAATGTGAGGTTATGAACTATAAATATGAAATGAAGTGTTTAGATATGCTTGATAGTCGGCCTATCCTTGTTTATTATGAGAACTTGTATTACGAATATCTTCATATCATCTATTTTTTCATATATGTAGATGATGGTCAACTGAAGGCCAACGAAG-ACGCTCCAGAAAATAATCCGCAGTACACAACTGTATATGTTGGCAACCTTGCTCCTGATGTAAGTACCGGTTGGGACAGGGGGAGTATCACTTCAGCTTTAGTCGGGAGGAATTTATTTGCGATTATTTAGAATATCTTCTTGTTCTGACATCCAGTTATGTTCCAGGTCACTACCATTGACCTCCATCGTTATTTTCATGCTCTTGGGGC</genome_strand>
        <mrna_strand>TTTTGATCGCCAATCAGCTGCGCTTGCTATTGTGAGCCTCAATGGAAGGCAATT..........................................................................GTTTGGACAGTGTATAAAAGTTAACTGGGCTTATGCCAGTGCTAAAAGAGAGGACACCATCAA.......................................................................................ATCATTTTAGCATATTTGTTGGTGATCTTAGTCCGGAGGTTACAGATTCCACACTGTTTGCGTGCTTTTCAGTATACCCTAGCTGCTC........................................................................................................AGAATGCAAGAGTGATGTGGGATCAGAAAATAGGCCGGTCTAGAGGGTTTGGGTTTGTTTCCTTTCGTGATCAGCAG............................................................................................................GAAGCCCAAAGTGCAATAGATGACTTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGCTTGGAAGCCGACAAATCCGCTGCAACTGGGCAGCAAAAGGTGCTGGAGCCAGTAATGACAACCGGAGTTCAGAAGCTAAAAGTGCTGTTGAGTTGACAACTGGAACATCAG..............................................................................................................................................................................................................................................................................................................................................................................ATGATGGTCAACTGAAGGCCAACGAAGAACGCTCCAGAAAATAATCCGCAGTACACAACTGTATATGTTGGCAACCTTGCTCCTGAT............................................................................................................GTCACTACCATTGACCTCCATCGNTATTTTCATGCTCTTGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342327" ref_strand="+" ref_description="SGN-E342327 [cTOF-8-F15]">
      <seq>tttgttggtgatcttagtccggaggttaccagattccacactgtttgcgtgcttttcagtataccctagctgctcagatgcaagagtgatgtgggatcagaaaataggccggtctagagggtttgggtttgtttcctttcgtgatcagcaggaagcccaaagtgcaatagatgacttgaatggaaagtggcttggaagccgacaaatccgctgcaactgggcagcaaaaggtgctggagccagtaatgacaaccggagttcagatgctaaaagtgctgttgagttgacaactggaacatcagatgatggtcaactgaaggccaacgaagacgctccagaaaataatccgcagtacacaactgtatatgttggcaaccttgctcctgatgtcactaccattgacctccatcgttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="38147" stop="40572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38447" g_stop="38520" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38521" i_stop="38624" i_length="104">
            <donor d_prob="0.875" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38625" g_stop="38700" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="151" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38701" i_stop="38808" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38809" g_stop="38839" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="182" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38840" i_stop="39563" i_length="724">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39564" g_stop="39683" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="302" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39684" i_stop="40049" i_length="366">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40050" g_stop="40135" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="388" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40136" i_stop="40243" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40244" g_stop="40272" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="417" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E342327" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38447" e_stop="38520"/>
          <exon e_start="38625" e_stop="38700"/>
          <exon e_start="38809" e_stop="38839"/>
          <exon e_start="39564" e_stop="39683"/>
          <exon e_start="40050" e_stop="40135"/>
          <exon e_start="40244" e_stop="40272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTGGTGATCTTAGTCCGGAGGTTA-CAGATTCCACACTGTTTGCGTGCTTTTCAGTATACCCTAGCTGCTCGTACGTCCACTCTCTGTTTATTTTGTACTATACACGGTCTGCTGGCATTCATATTCTGAAAATGGATGATAATACACAATGCTACATTAATGTTTTTCTTGTAGAGATGCAAGAGTGATGTGGGATCAGAAAATAGGCCGGTCTAGAGGGTTTGGGTTTGTTTCCTTTCGTGATCAGCAGGTATTAAGCTAGCTAAATACTATCTTACGATCTTTGCTATTATTGCTCCTCTTTACAACCCCCCTAAACAAAAAAAATGAAAGTACTCGTTATGTTTGTTTTGTGCAGGAAGCCCAAAGTGCAATAGATGACTTGAATGGTAAGATCAAATGTTTGGTCTATACTCTATATCTTGCTTCGCCATTATATTTGTATGCCGATCTCTACAATTTCATCAGATTAAGACCACGATGTCAGTAGTCATTTCTTTTAACCATCCATATTCTATTGGAAAAATGCAGTTGGGTTTATTTATATTACTTACGTGATACGTCGGTTAGATGGTTGACATATATGTGAATTGGGAAAAATGTAGTTGTGCCAGTTCCCCAAAAAAATGCGGTGGTGCCTATTTATATTTCATATGTTGGTTTGATGGTAGATATATATGTGAAACCACGGTGAGTGAAGGTGTTATAAGGGACGAGGCAGTCTTAATGACTGAAGTCAAGAAGGGACGAAAGTTTTTCAGGGATCCATGTAGACTTAGCGAGAGATACAGTGAATTTTATTGAAGACGCCCCTGGTTTTATTTATTACATATTGAAACTTACGGTGCGGACAAAGTTATCCCGGTATTATAGTTCTGGGTTCACCTCCCAATTGGGATAATAAAATAACACCAAGTTTGAGGTATTAATTTTGTCCCCGGATTAGTTACACCTTCAACCAAAGTATAAATTTTATTACAAACTTAGTCTTGGGATATCCCACCTTATCCCATGAACCAAATGACCCCTAATAGTGTATTCTATCGAGGACTCCTATGGTTTTCTTTCTTTTATTGTTACCTAATTGAATTTTTTTGTTTATTAAAACAAAAGGAAAGTGGCTTGGAAGCCGACAAATCCGCTGCAACTGGGCAGCAAAAGGTGCTGGAGCCAGTAATGACAACCGGAGTTCAGATGCTAAAAGTGCTGTTGAGTTGACAACTGGAACATCAGGTGGGTTATGTTACATGCTTATTTTGGCTACTACTGCTTTTGTCTTCTCCGCATACTATTTCAACTTCTGATGGTTGAGAGTCTCTACTCATTTATATTTTAAAACATCTGTGTGTTTCCAGTGTTTTCCGTTTCAATTAGCTTCAGATTTCATGTAGGATCTTTGAGTGTAGACCAGAGCACGTGCCATATGATATGAATTCCATGCTAATATACATAAAAATCTTCTATCAAGCTAATGTGAGGTTATGAACTATAAATATGAAATGAAGTGTTTAGATATGCTTGATAGTCGGCCTATCCTTGTTTATTATGAGAACTTGTATTACGAATATCTTCATATCATCTATTTTTTCATATATGTAGATGATGGTCAACTGAAGGCCAACGAAGACGCTCCAGAAAATAATCCGCAGTACACAACTGTATATGTTGGCAACCTTGCTCCTGATGTAAGTACCGGTTGGGACAGGGGGAGTATCACTTCAGCTTTAGTCGGGAGGAATTTATTTGCGATTATTTAGAATATCTTCTTGTTCTGACATCCAGTTATGTTCCAGGTCACTACCATTGACCTCCATCGTTATTT</genome_strand>
        <mrna_strand>TTTGTTGGTGATCTTAGTCCGGAGGTTACCAGATTCCACACTGTTTGCGTGCTTTTCAGTATACCCTAGCTGCTC........................................................................................................AGATGCAAGAGTGATGTGGGATCAGAAAATAGGCCGGTCTAGAGGGTTTGGGTTTGTTTCCTTTCGTGATCAGCAG............................................................................................................GAAGCCCAAAGTGCAATAGATGACTTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGCTTGGAAGCCGACAAATCCGCTGCAACTGGGCAGCAAAAGGTGCTGGAGCCAGTAATGACAACCGGAGTTCAGATGCTAAAAGTGCTGTTGAGTTGACAACTGGAACATCAG..............................................................................................................................................................................................................................................................................................................................................................................ATGATGGTCAACTGAAGGCCAACGAAGACGCTCCAGAAAATAATCCGCAGTACACAACTGTATATGTTGGCAACCTTGCTCCTGAT............................................................................................................GTCACTACCATTGACCTCCATCGTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549342" ref_strand="+" ref_description="SGN-E549342 [TUS-69-I14](-)">
      <seq>agtgcaataaatgacttgaatgaaaagtggcttggaagccgacaaatccgctgcaactgggcagcaaaaggtgctggagccggtaatgacaaccggagttcagatgctaaaagtgctgttgagttgacaactggaacatcagatgatggtcaactgaaggccaacgaagacgctccagaaaataatccgcagtacacaactgtatatgttggcaaccttgctcctgatgtcactaccattgacctccatcgttattttcatgctcttggggctggtgttattgctgatgtccgtattcagcgagacagaggatttggctttttacgatatagcgatcatgctgaagcagctcgagcaatccaattgggaaatgctcgaatcctctttggtaaacctattaagtgctcatggggaagcaagccaactccaccaggaagcagcacgaaccctctaccacctcctgttatcagacaactccctggtatttcagccatgggtcttgcgatgtacgagaggcaggttgctttggctaggatgactggtatgcagactctcatgcaacaccagggacagcgaattggcgttgctagtcaggttctgtatgatggtggcattgcttccccgcagccaccgatatactactagttgttgattcaataaaaacttgtaaacacctgttgttgttagttctctgtgctattttatgtgatagaatcctcctcttttcttatctattgttagttttctttagcttcctttaataccatcagaccagaatgtattggatatgtagtttgtattctgtttgagaatgaaagttataaatatctcttggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="39260" stop="41250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39564" g_stop="39683" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="142" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39684" i_stop="40049" i_length="366">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40050" g_stop="40135" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="228" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40136" i_stop="40243" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40244" g_stop="40417" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="402" r_length="174" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40418" i_stop="40506" i_length="89">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40507" g_stop="40956" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="850" r_length="448" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E549342" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39564" e_stop="39683"/>
          <exon e_start="40050" e_stop="40135"/>
          <exon e_start="40244" e_stop="40417"/>
          <exon e_start="40507" e_stop="40956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTGGCTTGGAAGCCGACAAATCCGCTGCAACTGGGCAGCAAAAGGTGCTGGAGCCAGTAATGACAACCGGAGTTCAGATGCTAAAAGTGCTGTTGAGTTGACAACTGGAACATCAGGTGGGTTATGTTACATGCTTATTTTGGCTACTACTGCTTTTGTCTTCTCCGCATACTATTTCAACTTCTGATGGTTGAGAGTCTCTACTCATTTATATTTTAAAACATCTGTGTGTTTCCAGTGTTTTCCGTTTCAATTAGCTTCAGATTTCATGTAGGATCTTTGAGTGTAGACCAGAGCACGTGCCATATGATATGAATTCCATGCTAATATACATAAAAATCTTCTATCAAGCTAATGTGAGGTTATGAACTATAAATATGAAATGAAGTGTTTAGATATGCTTGATAGTCGGCCTATCCTTGTTTATTATGAGAACTTGTATTACGAATATCTTCATATCATCTATTTTTTCATATATGTAGATGATGGTCAACTGAAGGCCAACGAAGACGCTCCAGAAAATAATCCGCAGTACACAACTGTATATGTTGGCAACCTTGCTCCTGATGTAAGTACCGGTTGGGACAGGGGGAGTATCACTTCAGCTTTAGTCGGGAGGAATTTATTTGCGATTATTTAGAATATCTTCTTGTTCTGACATCCAGTTATGTTCCAGGTCACTACCATTGACCTCCATCGTTATTTTCATGCTCTTGGGGCTGGTGTTATTGCTGATGTCCGTATTCAGCGAGACAGAGGATTTGGCTTTGTACGATACAGCAATCATGCTGAAGCAGCTCGAGCAATTCAATTAGGAAATGCTCGAATCCTCTTTGGTAAACCTATTAAGGTACTATGTTATACCATGACATGAATTTTTCGGACGTTCATCAATATAATACGTCTAGCTACCTATTGAGGTACTGTGTCCATCTGCAGTGCTCATGGGGAAGCAAGCCAACTCCACCAGGAAGCAGCACGAACCCTCTACCACCTCCTGTTATCAGACAACTCCCTGGTATTTCAGCCATGGGTCTTGCGATGTACGAGAGGCAGGTTGCTTTGGCTAGGATGACTGGTATGCAGACTCTCATGCAACACCAGGGACAGCGAATTGGCGTTGCTAGTCAGGTTCTGTATGATGGTGGCATTGCTTCCCCGCAGCCACCGGTATACTACTAGTTGTTGATTCAATAAAAACTTGTAAACACCTGTTGTTGTTAGTTCTCTGTGCTATTTTAAGTGATAGAATCCTCCTCTCTTTTTTTTTATCTATTGTTAGTTTTCTTTAGCTTCCTTTAATACCATCAGA-CAGAATGTATTGGATATGTAGTCTGTATTCTGTTTGAGAATGAAAGTTAT-AATATCTCTTTGGAAATACAATCACTT</genome_strand>
        <mrna_strand>AAAAGTGGCTTGGAAGCCGACAAATCCGCTGCAACTGGGCAGCAAAAGGTGCTGGAGCCGGTAATGACAACCGGAGTTCAGATGCTAAAAGTGCTGTTGAGTTGACAACTGGAACATCAG..............................................................................................................................................................................................................................................................................................................................................................................ATGATGGTCAACTGAAGGCCAACGAAGACGCTCCAGAAAATAATCCGCAGTACACAACTGTATATGTTGGCAACCTTGCTCCTGAT............................................................................................................GTCACTACCATTGACCTCCATCGTTATTTTCATGCTCTTGGGGCTGGTGTTATTGCTGATGTCCGTATTCAGCGAGACAGAGGATTTGGCTTTTTACGATATAGCGATCATGCTGAAGCAGCTCGAGCAATCCAATTGGGAAATGCTCGAATCCTCTTTGGTAAACCTATTAAG.........................................................................................TGCTCATGGGGAAGCAAGCCAACTCCACCAGGAAGCAGCACGAACCCTCTACCACCTCCTGTTATCAGACAACTCCCTGGTATTTCAGCCATGGGTCTTGCGATGTACGAGAGGCAGGTTGCTTTGGCTAGGATGACTGGTATGCAGACTCTCATGCAACACCAGGGACAGCGAATTGGCGTTGCTAGTCAGGTTCTGTATGATGGTGGCATTGCTTCCCCGCAGCCACCGATATACTACTAGTTGTTGATTCAATAAAAACTTGTAAACACCTGTTGTTGTTAGTTCTCTGTGCTATTTTATGTGATAGAATCCT-C-CTC--TTTTCTTATCTATTGTTAGTTTTCTTTAGCTTCCTTTAATACCATCAGACCAGAATGTATTGGATATGTAGTTTGTATTCTGTTTGAGAATGAAAGTTATAAATATCTCTTGGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368094" ref_strand="+" ref_description="SGN-E368094 [TUS-22-K8](-)">
      <seq>aattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagattcttggagaaaaggaaagatagagtaacatcaattgcaccataccaaatctccaacaacaagaaatccaagaatgaggataacaaagcatggttgggattaggtgctcaatttgttaaaactgagcaatatttctagttactattcttgttttttttttgttttgttttcatttttgattattgaagaagggaagtcttggtgtgacgtaactggtaaaagttagtgttatgtggaccaggaggtaacaggttcgagctgtggaaagcaaaaggactgtcacagagagcttagtacaccagactgccctgatgattataggcctattgctttgatatactactattagataaccaagtttttggttttttttagttggtttcgagattgattgaagccactttgatctaactatgaaatactatttttaacatttttttttttgtaatcaagactatgtttgttattaagtactttattatatttatatatatatatgtaatattatttaaattcattaaggttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="47025" stop="45815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46725" g_stop="46120" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="612" polyA_stop="622"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E368094" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46725" e_stop="46120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTG-TTTTTTTTTGTTTTGTTTTCATTTTTGATTATTGAAGAAGGGAAGTCTTGGTGTGACGTAACTGGTAAAAGTTAGTGTTATGTGGACCAGGAGGTAACAGGTTCGAGCTGTGGAAAGCAAAAGGACTGTCACAGAGAGCTTAGTACACCAGACTGCCCTGATGATTATAGGCCTATTGCTTTGATATACTACTATTAGATAACCAAGTTTTTGGTTTTTTTTAGTTGGTTTCGAGATTGATTGAAGCCACTTTGATCTAACTATGAAATACTATTTTTAACA-TTTTTTTTTTGTAATCAAGACTATGTTTGTTATTAAGTACTTTATTATATTTATATATATATATGTAATATTATTTAAATTCATTAAG</genome_strand>
        <mrna_strand>AATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTGTTTTTTTTTTGTTTTGTTTTCATTTTTGATTATTGAAGAAGGGAAGTCTTGGTGTGACGTAACTGGTAAAAGTTAGTGTTATGTGGACCAGGAGGTAACAGGTTCGAGCTGTGGAAAGCAAAAGGACTGTCACAGAGAGCTTAGTACACCAGACTGCCCTGATGATTATAGGCCTATTGCTTTGATATACTACTATTAGATAACCAAGTTTTTGGTTTTTTTTAGTTGGTTTCGAGATTGATTGAAGCCACTTTGATCTAACTATGAAATACTATTTTTAACATTTTTTTTTTTGTAATCAAGACTATGTTTGTTATTAAGTACTTTATTATATTTATATATATATATGTAATATTATTTAAATTCATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371438" ref_strand="+" ref_description="SGN-E371438 [TUS-29-H20](-)">
      <seq>tgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagattcttggagaaaaggaaagatagagtaacatcaattgcaccataccaaatctccaacaacaagaaatccaagaatgaggataacaaagcatggttgggattaggtgctcaatttgttaaaactgagcaatatttctagttactattcttgttttttttttgttttgttttcatttttgattattgaagaagggaagtcttggtgtgacgtaactggtaaaagttagtgttatgtggaccaggaggtaacaggttcgagctgtggaaagcaaaaggactgtcacagagagcttagtacaccagactgccctgatgattataggcctattgctttgatatactactattagataaccaagtttttggttttttttagttggtttcgagattgattgaagccactttgatctaactatgaaatactatttttaacatttttttttttgtaatcaagactatgtttgttattaagtactttattatatttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="47193" stop="45845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46893" g_stop="46143" g_length="751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E371438" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46893" e_stop="46143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTG-TTTTTTTTTGTTTTGTTTTCATTTTTGATTATTGAAGAAGGGAAGTCTTGGTGTGACGTAACTGGTAAAAGTTAGTGTTATGTGGACCAGGAGGTAACAGGTTCGAGCTGTGGAAAGCAAAAGGACTGTCACAGAGAGCTTAGTACACCAGACTGCCCTGATGATTATAGGCCTATTGCTTTGATATACTACTATTAGATAACCAAGTTTTTGGTTTTTTTTAGTTGGTTTCGAGATTGATTGAAGCCACTTTGATCTAACTATGAAATACTATTTTTAACA-TTTTTTTTTTGTAATCAAGACTATGTTTGTTATTAAGTACTTTATTATATTTATATATATATATG</genome_strand>
        <mrna_strand>TGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTGTTTTTTTTTTGTTTTGTTTTCATTTTTGATTATTGAAGAAGGGAAGTCTTGGTGTGACGTAACTGGTAAAAGTTAGTGTTATGTGGACCAGGAGGTAACAGGTTCGAGCTGTGGAAAGCAAAAGGACTGTCACAGAGAGCTTAGTACACCAGACTGCCCTGATGATTATAGGCCTATTGCTTTGATATACTACTATTAGATAACCAAGTTTTTGGTTTTTTTTAGTTGGTTTCGAGATTGATTGAAGCCACTTTGATCTAACTATGAAATACTATTTTTAACATTTTTTTTTTTGTAATCAAGACTATGTTTGTTATTAAGTACTTTATTATATTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238127" ref_strand="+" ref_description="SGN-E238127 [cLED-22-B18]">
      <seq>atcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagattcttggagaaaaggaaagatagagtaacatcaattgcaccataccaaatctccaacaacaagaaatccaagaatgaggataacaaagcatggttgggattaggtgctcaatttgttaaaactgagcaatatttctagttactattcttgttttttttttgttttgttttcatttttgattattgaagaaaggaagtcttggtgtgacgtaactggtaaaagttagtgttatgtggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="47228" stop="46103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46928" g_stop="46403" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E238127" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46928" e_stop="46403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTGTTTTTTTT-TGTTTTGTTTTCATTTTTGATTATTGAAGAAGGGAAGTCTTGGTGTGACGTAACTGGTAAAAGTTAGTGTTATGTGGAC</genome_strand>
        <mrna_strand>ATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTGTTTTTTTTTTGTTTTGTTTTCATTTTTGATTATTGAAGAAAGGAAGTCTTGGTGTGACGTAACTGGTAAAAGTTAGTGTTATGTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214320" ref_strand="+" ref_description="SGN-E214320 [cLEC-77-N20]">
      <seq>tatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagattcttggagaaaaggaaagatagagtaacatcaattgcaccataccaaatctccaacaacaagaaatccaagaatgaggataacaaagcatggttgggattaggtgctcaatttgttaaaactgagcaatatttctagttactattcttgttttttttgttttgttttcatttttgattattgaagaagggaagtcttggtgtgacgtaactggtaaaagttagtgttatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="47369" stop="46104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47069" g_stop="46404" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E214320" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47069" e_stop="46404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTGTTTTTTTTTGTTTTGTTTTCATTTTTGATTATTGAAGAAGGGAAGTCTTGGTGTGACGTAACTGGTAAAAGTTAGTGTTATGTGGA</genome_strand>
        <mrna_strand>TATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTG-TTTTTTTTGTTTTGTTTTCATTTTTGATTATTGAAGAAGGGAAGTCTTGGTGTGACGTAACTGGTAAAAGTTAGTGTTATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210524" ref_strand="+" ref_description="SGN-E210524 [cLEC-35-L5]">
      <seq>gaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagattcttggagaaaaggaaagatagagtaacatcaattgcaccataccaaatctccaacaacaagaaatccaagaatgaggataacaaagcatggttgggattaggtgctcaatttgttaaaactgagcaatatttctagttactattcttgttttttttttgttttgttttcatttttgattattgaagaaaggaagtcttggtgtgacgtaactggtaaaagttagtgttatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="47345" stop="46104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47045" g_stop="46404" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E210524" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47045" e_stop="46404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTGTTTTTTT-TTGTTTTGTTTTCATTTTTGATTATTGAAGAAGGGAAGTCTTGGTGTGACGTAACTGGTAAAAGTTAGTGTTATGTGGA</genome_strand>
        <mrna_strand>GAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTGTTTTTTTTTTGTTTTGTTTTCATTTTTGATTATTGAAGAAAGGAAGTCTTGGTGTGACGTAACTGGTAAAAGTTAGTGTTATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231577" ref_strand="+" ref_description="SGN-E231577 [cLED-4-H14]">
      <seq>gaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagattcttggagaaaaggaaagatagagtaacatcaattgcaccataccaaatctccaacaacaagaaatccaagaatgaggataacaaagcatggttgggattaggtgctcaatttgttaaaactgagcaatatttctagttactattcttgttttttttttgttttgttttcatttttgattattgaagaagggaagtcttggtgtgacgtaactggtaaaagttagtgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="47251" stop="46109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46951" g_stop="46409" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E231577" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46951" e_stop="46409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTGTT-TTTTTTTGTTTTGTTTTCATTTTTGATTATTGAAGAAGGGAAGTCTTGGTGTGACGTAACTGGTAAAAGTTAGTGTTAT</genome_strand>
        <mrna_strand>GAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTGTTTTTTTTTTGTTTTGTTTTCATTTTTGATTATTGAAGAAGGGAAGTCTTGGTGTGACGTAACTGGTAAAAGTTAGTGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213888" ref_strand="+" ref_description="SGN-E213888 [cLEC-76-H22]">
      <seq>tatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagattcttggagaaaaggaaagatagagtaacatcaattgcaccataccaaatctccaacaacaagaaatccaagaatgaggataacaaagcatggttgggattaggtgctcaatttgttaaaactgagcaatatttctagttactattcttgttttttttggtttgttttcatttttgaatattgaagaagggaagtcttggtgtgacgtaactggtaaaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="47369" stop="46116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47069" g_stop="46416" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E213888" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47069" e_stop="46416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTGTTTTTTTTTGTTTTGTTTTCATTTTTGATTATTGAAGAAGGGAAGTCTTGGTGTGACGTAACTGGTAAAAGTTA</genome_strand>
        <mrna_strand>TATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTG-TTTTTTTTGGTTTGTTTTCATTTTTGAATATTGAAGAAGGGAAGTCTTGGTGTGACGTAACTGGTAAAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368095" ref_strand="+" ref_description="SGN-E368095 [TUS-22-K8]">
      <seq>ggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagattcttggagaaaaggaaagatagagtaacatcaattgcaccataccaaatcttcaacaacaagaaatccaagaatgaggataacaaagcatggttgggattaggtgctcaatttgttaaaactgagcaatatttctagttactattcttgtttttttttttgttttgttttaatttttgattattgaagaagggaagtcttggtgtgacgtacctggtaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48756" stop="46119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48456" g_stop="48408" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46419" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="736" r_length="687" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E368095" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48456" e_stop="48408"/>
          <exon e_start="47103" e_stop="46419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTG--TTTTTTTTTGTTTTGTTTTCATTTTTGATTATTGAAGAAGGGAAGTCTTGGTGTGACGTAACTGGTAAAAG</genome_strand>
        <mrna_strand>GGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTTCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTGTTTTTTTTTTTGTTTTGTTTTAATTTTTGATTATTGAAGAAGGGAAGTCTTGGTGTGACGTACCTGGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232885" ref_strand="+" ref_description="SGN-E232885 [cLED-8-M16]">
      <seq>gaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagattcttggagaaaaggaaagatagagtgacatcaattgcaccataccaaatctccaacaacaagaaatccaagaatgaggataacaaagcatggttgggattaggtgctcaatttgttaaaactgagcaatatttctagttactattcttggttttattttgttttgttttcatttttgattattgaagaaaggaagtcttggtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="47251" stop="46134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46951" g_stop="46434" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E232885" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46951" e_stop="46434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTT-GTTTTTTTTTGTTTTGTTTTCATTTTTGATTATTGAAGAAGGGAAGTCTTGGTGTGA</genome_strand>
        <mrna_strand>GAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTGACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTGGTTTTATTTTGTTTTGTTTTCATTTTTGATTATTGAAGAAAGGAAGTCTTGGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235918" ref_strand="+" ref_description="SGN-E235918 [cLED-16-N13]">
      <seq>gaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagattcttggagaaaaggaaagatagagtaacatcaattgcaccataccaaatctccaacaacaagaaatccaagaatgaggataacaaagcatggttgggattaggtgctcaatttgttaaaactgagcaatatttctagttactattcttggtttttttttgttttggtttcatttttgattattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="47251" stop="46155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46951" g_stop="46455" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E235918" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46951" e_stop="46455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTT-GTTTTTTTTTGTTTTGTTTTCATTTTTGATTATTGA</genome_strand>
        <mrna_strand>GAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTGGTTTTTTTTTGTTTTGGTTTCATTTTTGATTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233213" ref_strand="+" ref_description="SGN-E233213 [cLED-6-P12]">
      <seq>aatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagattcttggagaaaaggaaagatagagtaacatcaattgcaccataccaaatctccaacaacaagaaatccaagaatgaggataacaaagcatggttgggattaggtgctcaatttgttaaaactgagcaatatttctagttactattcttgttttttttttgttttggtttcatttttgattattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="47268" stop="46156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46968" g_stop="46456" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E233213" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46968" e_stop="46456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTG-TTTTTTTTTGTTTTGTTTTCATTTTTGATTATTG</genome_strand>
        <mrna_strand>AATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTGTTTTTTTTTTGTTTTGGTTTCATTTTTGATTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238348" ref_strand="+" ref_description="SGN-E238348 [cLED-17-G2]">
      <seq>tactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattggttttgatgattctccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagattcttggagaaaaggaaagatagagtaacatcaattgcaccataccaaatctacaacatcaagaaatccaagaatgaggataacaaagcatggttgggattaggtgctcaatttgttaaaactgagcaatatttctagttactattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="47387" stop="46191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47087" g_stop="46491" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E238348" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47087" e_stop="46491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTT</genome_strand>
        <mrna_strand>TACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGGTTTTGATGATTCTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTACAACATCAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231738" ref_strand="+" ref_description="SGN-E231738 [cLED-4-D6]">
      <seq>atgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagattcttggagaaaaggaaagatagagtaacatcaattgcaccataccaaatctccaacaacaagaaatccaagaatgaggataacaaagcatggttgggattaggtgctcaatttgttaaaactgagcaatatttctagttactattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="47353" stop="46193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47053" g_stop="46493" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E231738" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47053" e_stop="46493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTC</genome_strand>
        <mrna_strand>ATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237588" ref_strand="+" ref_description="SGN-E237588 [cLED-19-N14]">
      <seq>aatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagattcttggagaaaaggaaagatagagtaacatcaattgcaccataccaaatctccaacaacaagaaatccaagaatgaggataacaaagcatggttgggattaggtgctcaatttgttaaaactgagcaatatttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="47268" stop="46203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46968" g_stop="46503" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E237588" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46968" e_stop="46503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTA</genome_strand>
        <mrna_strand>AATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211425" ref_strand="+" ref_description="SGN-E211425 [cLEC-67-G22]">
      <seq>acaaaaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttacaatcgcgagacggaattcacttacaagattcttggagaaagggaagatagagtaactcaattgcaccatccaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48930" stop="46289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48630" g_stop="48408" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46589" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="734" r_length="511" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E211425" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48630" e_stop="48408"/>
          <exon e_start="47103" e_stop="46589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATC</genome_strand>
        <mrna_strand>ACAAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTA-CAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAG-AAAGGGAAGATAGAGTAAC-TCAATTGCACCAT-CCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210818" ref_strand="+" ref_description="SGN-E210818 [cLEC-68-L9]">
      <seq>aaaaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaacctnggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagattcttggagaaaaggaaagatagagtaacatcaattgcaccataccaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48928" stop="46289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48628" g_stop="48408" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46589" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="737" r_length="516" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E210818" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48628" e_stop="48408"/>
          <exon e_start="47103" e_stop="46589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCT-GGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATC</genome_strand>
        <mrna_strand>AAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAACCTNGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214047" ref_strand="+" ref_description="SGN-E214047 [cLEC-80-E19]">
      <seq>aaaaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagattcttggagnaaaggaaagatagagtaacatcaattgcaccataccaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48928" stop="46289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48628" g_stop="48408" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46589" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="736" r_length="515" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E214047" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48628" e_stop="48408"/>
          <exon e_start="47103" e_stop="46589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATC</genome_strand>
        <mrna_strand>AAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGNAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243734" ref_strand="+" ref_description="SGN-E243734 [cLED-35-G8]">
      <seq>acaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagattcttggagaaaaggaaagatagagtaacatcaattgcaccataccaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="47198" stop="46289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46898" g_stop="46589" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E243734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46898" e_stop="46589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATC</genome_strand>
        <mrna_strand>ACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E380040" ref_strand="+" ref_description="SGN-E380040 [TUS-3-J20]">
      <seq>aaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagaacggattcacttacnagattcttggagaaaaggaaagatagagtaacatcaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48926" stop="46302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48626" g_stop="48408" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46602" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="721" r_length="502" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E380040" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E380040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48626" e_stop="48408"/>
          <exon e_start="47103" e_stop="46602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGC</genome_strand>
        <mrna_strand>AAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGAACGGATTCACTTACNAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242407" ref_strand="+" ref_description="SGN-E242407 [cLED-30-C12]">
      <seq>ggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgcttttgatgattttccagctgataaagcaaatgagatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaactttctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaggattcttggagaaaaggaaagatagagtaacatcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48756" stop="46304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48456" g_stop="48408" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46604" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="549" r_length="500" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E242407" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48456" e_stop="48408"/>
          <exon e_start="47103" e_stop="46604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATT</genome_strand>
        <mrna_strand>GGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGCTTTTGATGATTTTCCAGCTGATAAAGCAAATGAGATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTTCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAGGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237752" ref_strand="+" ref_description="SGN-E237752 [cLED-19-L24]">
      <seq>ggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcacttacaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48756" stop="46339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48456" g_stop="48408" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46639" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="514" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E237752" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48456" e_stop="48408"/>
          <exon e_start="47103" e_stop="46639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGAT</genome_strand>
        <mrna_strand>GGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207524" ref_strand="+" ref_description="SGN-E207524 [cLEC-36-F20]">
      <seq>agaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagccttctgttgctgatttaccaatcgcgagacggaattcactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48821" stop="46345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48521" g_stop="48408" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46645" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="573" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E207524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48521" e_stop="48408"/>
          <exon e_start="47103" e_stop="46645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTA</genome_strand>
        <mrna_strand>AGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211929" ref_strand="+" ref_description="SGN-E211929 [cLEC-66-E8]">
      <seq>tcacaaaaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaaatcaaaaacagctgatcaatctggtgtgagttttggtaacaattgattccagaacttcctaactgtcaatgcacagccttctgttgctgatttaccatcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48932" stop="46361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48632" g_stop="48408" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46661" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="664" r_length="439" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E211929" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48632" e_stop="48408"/>
          <exon e_start="47103" e_stop="46661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCG</genome_strand>
        <mrna_strand>TCACAAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAAATCAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAAC-AATTGATTCCAGAACTTCCT-AACTGTCAATG-CACAGCCTTCTGTTGCTGATTTACC-ATCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207005" ref_strand="+" ref_description="SGN-E207005 [cLEC-33-F18]">
      <seq>aaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggttatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaactgtcaatgccacagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48926" stop="46385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48626" g_stop="48408" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46685" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="638" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E207005" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48626" e_stop="48408"/>
          <exon e_start="47103" e_stop="46685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCT</genome_strand>
        <mrna_strand>AAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTTATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280364" ref_strand="+" ref_description="SGN-E280364 [cLER-1-I12]">
      <seq>aaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48926" stop="46401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48626" g_stop="48408" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46701" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="622" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E280364" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48626" e_stop="48408"/>
          <exon e_start="47103" e_stop="46701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACT</genome_strand>
        <mrna_strand>AAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240468" ref_strand="+" ref_description="SGN-E240468 [cLED-21-E12]">
      <seq>acgagcttggtatttacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaacttcctaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48743" stop="46401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48446" g_stop="48408" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46701" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="442" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E240468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48446" e_stop="48408"/>
          <exon e_start="47103" e_stop="46701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACT</genome_strand>
        <mrna_strand>ACGAGCTTGGTATTTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238608" ref_strand="+" ref_description="SGN-E238608 [cLED-17-J24]">
      <seq>ggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaattgattcaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48756" stop="46411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48456" g_stop="48408" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46711" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="442" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E238608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48456" e_stop="48408"/>
          <exon e_start="47103" e_stop="46711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAAC</genome_strand>
        <mrna_strand>GGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231295" ref_strand="+" ref_description="SGN-E231295 [cLED-5-N12]">
      <seq>atcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctggtgtgagttttggtaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="47228" stop="46424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46928" g_stop="46724" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E231295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46928" e_stop="46724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAA</genome_strand>
        <mrna_strand>ATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378544" ref_strand="+" ref_description="SGN-E378544 [TUS-29-H20]">
      <seq>aaaagcatttcttgatatttcttctttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaaacaacagaacccccacaacaatttcacttatcctatgatcaagaatcaaaaaacagctgatcaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48926" stop="46444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48626" g_stop="48408" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46744" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="579" r_length="360" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E378544" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48626" e_stop="48408"/>
          <exon e_start="47103" e_stop="46744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTG</genome_strand>
        <mrna_strand>AAAAGCATTTCTTGATATTTCTTCTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAAACAACAGAACCCCCACAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208322" ref_strand="+" ref_description="SGN-E208322 [cLEC-37-E19]">
      <seq>gaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagcccacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="47345" stop="46455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47045" g_stop="46755" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E208322" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47045" e_stop="46755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGC</genome_strand>
        <mrna_strand>GAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCCACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337633" ref_strand="+" ref_description="SGN-E337633 [cTOE-11-F18]">
      <seq>ttcacaaaaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48933" stop="46459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48633" g_stop="48408" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46759" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="571" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E337633" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48633" e_stop="48408"/>
          <exon e_start="47103" e_stop="46759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAA</genome_strand>
        <mrna_strand>TTCACAAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235753" ref_strand="+" ref_description="SGN-E235753 [cLED-15-C17]">
      <seq>tggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaagcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48757" stop="46459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48457" g_stop="48408" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46759" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="395" r_length="345" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E235753" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48457" e_stop="48408"/>
          <exon e_start="47103" e_stop="46759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAA</genome_strand>
        <mrna_strand>TGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAAGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241207" ref_strand="+" ref_description="SGN-E241207 [cLED-26-K5]">
      <seq>agacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcacttatcctatgatcaagaatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48803" stop="46462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48503" g_stop="48408" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46762" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="438" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E241207" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48503" e_stop="48408"/>
          <exon e_start="47103" e_stop="46762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAA</genome_strand>
        <mrna_strand>AGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209732" ref_strand="+" ref_description="SGN-E209732 [cLEC-52-E8]">
      <seq>caagatggggtcatctgaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgataaatcaagtgattcatcgtcgttatcgtcgtccgttgaaacaaattctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttgtatacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaaatatgaagttagccaacaaactgaacccccacatacaatttcacttatcctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48868" stop="46475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48568" g_stop="48408" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46775" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="491" r_length="330" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E209732" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48568" e_stop="48408"/>
          <exon e_start="47103" e_stop="46775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAA-CCCCACAAACAATTTCACTTATCCTATG</genome_strand>
        <mrna_strand>CAAGATGGGGTCATCTGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGATAAATCAAGTGATTCATCGTCGTTATCGTCGTCCGTTGAAACAAATTCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGTATACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAAATATGAAGTTAGCCAACAAACTGAACCCCCACATACAATTTCACTTATCCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205486" ref_strand="+" ref_description="SGN-E205486 [cLEC-28-D1]">
      <seq>acaaaaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacanacagaaccccacaaacaatttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48930" stop="46484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48630" g_stop="48408" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46784" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="543" r_length="320" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E205486" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48630" e_stop="48408"/>
          <exon e_start="47103" e_stop="46784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACT</genome_strand>
        <mrna_strand>ACAAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACANACAGAACCCCACAAACAATTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209800" ref_strand="+" ref_description="SGN-E209800 [cLEC-52-B14]">
      <seq>aaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagcccacaaacagaaccccacaaacaatttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48926" stop="46485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48626" g_stop="48408" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46785" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="538" r_length="319" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E209800" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48626" e_stop="48408"/>
          <exon e_start="47103" e_stop="46785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCAC</genome_strand>
        <mrna_strand>AAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCCACAAACAGAACCCCACAAACAATTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242490" ref_strand="+" ref_description="SGN-E242490 [cLED-30-M13]">
      <seq>aaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagttagccaacaaacagaaccccacaaacaatttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48925" stop="46485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48625" g_stop="48408" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46785" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="537" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E242490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48625" e_stop="48408"/>
          <exon e_start="47103" e_stop="46785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCAC</genome_strand>
        <mrna_strand>AAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359258" ref_strand="+" ref_description="SGN-E359258 [cLHT-31-C15]">
      <seq>ttcacaaaaagcatttctttgatatttcaactttttcaaatatttcattttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaaccaactggatctcaacaaacagctaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagattgaatcttggaaacctgatcaaccagagaaggctcaaatgaccattttttttggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48933" stop="46519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48633" g_stop="48408" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46819" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="509" r_length="282" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E359258" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48633" e_stop="48408"/>
          <exon e_start="47103" e_stop="46819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAAAAAAGCATTTC-TTGATATTTCAACTTTCTCAAATATTTCATT-TTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGT</genome_strand>
        <mrna_strand>TTCAC-AAAAAGCATTTCTTTGATATTTCAACTTTTTCAAATATTTCATTTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAACCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAG---CTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGATTGAATCTTGGAAACCTGATCAACCAGAGAAGGCTCAAATGACCATTTTTTTTGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200221" ref_strand="+" ref_description="SGN-E200221 [cLEC-12-M11]">
      <seq>aaaaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatnaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatgaaatcatgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48928" stop="46519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48628" g_stop="48408" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46819" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="506" r_length="285" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E200221" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48628" e_stop="48408"/>
          <exon e_start="47103" e_stop="46819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGT</genome_strand>
        <mrna_strand>AAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATNAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329246" ref_strand="+" ref_description="SGN-E329246 [cTOD-2-D11]">
      <seq>gaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagctgataaagcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48852" stop="46531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48552" g_stop="48408" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46831" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="418" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E329246" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48552" e_stop="48408"/>
          <exon e_start="47103" e_stop="46831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATG</genome_strand>
        <mrna_strand>GAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240175" ref_strand="+" ref_description="SGN-E240175 [cLED-25-K3]">
      <seq>aaagcattttttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggctctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaaccagagaaggcacaaatgaccattttttatggtggacaagtcattgtttttgatgattttccagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48925" stop="46544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48625" g_stop="48408" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46844" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="478" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E240175" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48625" e_stop="48408"/>
          <exon e_start="47103" e_stop="46844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCT</genome_strand>
        <mrna_strand>AAAGCATTTTTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGCTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239841" ref_strand="+" ref_description="SGN-E239841 [cLED-29-L15]">
      <seq>ttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48740" stop="46610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48440" g_stop="48408" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46910" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="227" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E239841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48440" e_stop="48408"/>
          <exon e_start="47103" e_stop="46910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAA</genome_strand>
        <mrna_strand>TTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242723" ref_strand="+" ref_description="SGN-E242723 [cLED-31-I17]">
      <seq>aaaaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagattcttggaaacctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48928" stop="46612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48628" g_stop="48408" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46912" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="413" r_length="192" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E242723" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48628" e_stop="48408"/>
          <exon e_start="47103" e_stop="46912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATC</genome_strand>
        <mrna_strand>AAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGATTCTTGGAAACCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204833" ref_strand="+" ref_description="SGN-E204833 [cLEC-14-O16]">
      <seq>aaaaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaagacagaatcttggaaacctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48928" stop="46613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48628" g_stop="48408" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46913" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="412" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E204833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48628" e_stop="48408"/>
          <exon e_start="47103" e_stop="46913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGAT</genome_strand>
        <mrna_strand>AAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211416" ref_strand="+" ref_description="SGN-E211416 [cLEC-67-E8]">
      <seq>tcacaaaaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatccgaaaatatggattccggcaaggtgaccggacagaaatctcaggtttctcaaacttgtaaccttttgagtcaattcttgaacaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacgaaccgctactaccaccaccactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccggtgaaacaaatcctctaaaacccatgaatcttttccctctagaatttgatttctccccagaacaatccaccaaaaagacagaatcttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48932" stop="46620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48632" g_stop="48408" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46920" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="409" r_length="184" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E211416" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48632" e_stop="48408"/>
          <exon e_start="47103" e_stop="46920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAA</genome_strand>
        <mrna_strand>TCACAAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCCGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGGTTTCTCAAACTTGTAACCTTTTGAGTCAATTCTTGAACAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACGAACCGCTACTACCACCACCACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGGTGAAACAAATCCTCTAAAACCCATGAATCTTTTCCCTCTAGAATTTGATTTCTCCCCAGAACAATCCACCAAAAAGACAGAATCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244581" ref_strand="+" ref_description="SGN-E244581 [cLED-38-L13]">
      <seq>aaaaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttctccaaagaacaatccacaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48928" stop="46634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48628" g_stop="48408" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46934" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="391" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E244581" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48628" e_stop="48408"/>
          <exon e_start="47103" e_stop="46934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAG</genome_strand>
        <mrna_strand>AAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241028" ref_strand="+" ref_description="SGN-E241028 [cLED-24-L24]">
      <seq>aaaaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgttggagatcttaataatcttggtatctacaaaactacttttgaatcaactggatctcaacaaacagctactaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttcttcaaagaacaatccacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48928" stop="46636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48628" g_stop="48408" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="389" r_length="168" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E241028" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48628" e_stop="48408"/>
          <exon e_start="47103" e_stop="46936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAA</genome_strand>
        <mrna_strand>AAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTTCAAAGAACAATCCACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365723" ref_strand="+" ref_description="SGN-E365723 [cLPT-8-K12]">
      <seq>tttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcagacttgtaaccttttgagtcaattcttgaagaaaaaaggttctgtcggagatcttaataatcttggtatctacaaaactacttttgaaccaactggatctcaacaaacagctaccaccacaactactatgaatttgttaccaatgattgagaaatcaagtgattcatcgtcgtcatcgtcgtccgttgaaacaaatcctcaaaaacccatgaatcttttccctcaagaatttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48919" stop="46658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48619" g_stop="48408" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="46958" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="355" r_length="143" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E365723" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48619" e_stop="48408"/>
          <exon e_start="47103" e_stop="46958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTC</genome_strand>
        <mrna_strand>TTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTCGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAACCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAG---CTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205423" ref_strand="+" ref_description="SGN-E205423 [cLEC-28-H15]">
      <seq>tcacaaaaaagcatttcttgatatttcaactttctcaaatatttcatttttttggccggaaaaacaagatggggtcatcggaaaatatggattccggcaaggtgaccggacagaaatctcagttttctcacacttgtaaccttttgagtcaattcttgaagaaaaaaggctctgttggagatcttaataatcttggtctctacaaaactacttctgaatcaactggatctcaacaaacagctactaccaccacgactactctgagtatgttaccactgattgataaatcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="48932" stop="46736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48632" g_stop="48408" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47103" g_stop="47036" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="293" r_length="68" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E205423" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48632" e_stop="48408"/>
          <exon e_start="47103" e_stop="47036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGT</genome_strand>
        <mrna_strand>TCACAAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCACACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGCTCTGTTGGAGATCTTAATAATCTTGGTCTCTACAAAACTACTTCTGAATCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAACAAACAGCTACTACCACCACGACTACTCTGAGTATGTTACCACTGATTGATAAATCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263860" ref_strand="+" ref_description="SGN-E263860 [cLEG-73-F8]">
      <seq>ggaactcaagacgtgctgtacgcatcaaaacagcacctggaagaggaggatacgttcgagatataacatacaagaacttgacatttgaaaacgttagggtgggaatcgtcatcaaaacagattacaatgaacatgctgacgagagttttgaccccaaagctgtcccattactggaaaacataagctacacaacaatccacggtgagggagttcgcgtgcctgttcaaatccacggtagcaaagaaatctgggtgagaaacgtcacttttagagatatgtcgattgggttaacatacaagaagaagcatatattccagtgtgcttacgttcaaggtcgtgttatagggactatcttccctgctccttgcaagaacctcgatctatatgacgaacaaggacatctgatcagacgttctgatgctcaaaacgcaacagacatagattatgacatttgaactgattccacggaatgccttcatagcgggagcttatgcaccgggcagtgttttattttattttctcattacattttgttctctgcattatacatacagaaccaagtcccttttgatgtattcaaaaaacccacagatccaatgtaaagaacacttcctttgttcctgtacagaatcttagttccatcaaagtaatgtttttaactaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="55031" stop="53769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54731" g_stop="54069" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="677"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E263860" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54731" e_stop="54069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTCAAGACGTGCTGTACGCATCAAAACAGCACCTGGAAGAGGAGGATACGTTCGAGATATAACATACAAGAACTTGACATTTGAAAACGTTAGGGTGGGAATCGTCATCAAAACAGATTACAATGAACATGCTGACGAGAGTTTTGACCCCAAAGCTGTCCCATTACTGGAAAACATAAGCTACACAACAATCCACGGTGAGGGAGTTCGCGTGCCTGTTCAAATCCACGGTAGCAAAGAAATCTGGGTGAGAAACGTCACTTTTAGAGATATGTCGATTGGGTTAACATACAAGAAGAAGCATATATTCCAGTGTGCTTACGTTCAAGGTCGTGTTATAGGGACTATCTTCCCTGCTCCTTGCAAGAACCTCGATCTATATGACGAACAAGGACATCTGATCAGACGTTCTGATGCTCAAAACGCAACAGACATAGATTATGACATTTGAACTGATTCCACGGAATGCCTTCATAGCGGGAGCTTAGTGCACCGGGCAGTGTTTTATTTTATTTTCTCATTACATTTTGTTCTCTGCATTATACATACAGAACCAAGTCCCTTTTGATGTATTCAAAAAACCCACAGATCCAATGTAAAGAACACTTCCTTTGTTCCTGTACAGAATCTTAGTTCCATCAAAGTAATGTTTTTAACTA</genome_strand>
        <mrna_strand>GGAACTCAAGACGTGCTGTACGCATCAAAACAGCACCTGGAAGAGGAGGATACGTTCGAGATATAACATACAAGAACTTGACATTTGAAAACGTTAGGGTGGGAATCGTCATCAAAACAGATTACAATGAACATGCTGACGAGAGTTTTGACCCCAAAGCTGTCCCATTACTGGAAAACATAAGCTACACAACAATCCACGGTGAGGGAGTTCGCGTGCCTGTTCAAATCCACGGTAGCAAAGAAATCTGGGTGAGAAACGTCACTTTTAGAGATATGTCGATTGGGTTAACATACAAGAAGAAGCATATATTCCAGTGTGCTTACGTTCAAGGTCGTGTTATAGGGACTATCTTCCCTGCTCCTTGCAAGAACCTCGATCTATATGACGAACAAGGACATCTGATCAGACGTTCTGATGCTCAAAACGCAACAGACATAGATTATGACATTTGAACTGATTCCACGGAATGCCTTCATAGCGGGAGCTTA-TGCACCGGGCAGTGTTTTATTTTATTTTCTCATTACATTTTGTTCTCTGCATTATACATACAGAACCAAGTCCCTTTTGATGTATTCAAAAAACCCACAGATCCAATGTAAAGAACACTTCCTTTGTTCCTGTACAGAATCTTAGTTCCATCAAAGTAATGTTTTTAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262054" ref_strand="+" ref_description="SGN-E262054 [cLEG-58-N10]">
      <seq>cagggcataatggtacaattaatgggcagggtcaagcatggtggaagaaattccggcagaagcttcttaaccattcccgaggaccgctcgtgcagatcatgtggtctactgacatcctaatatcaaatataactttacaagattctcccttttggacactccatccatatgactgcaagaatgtaacaatcaggaatgttacaatcctggcacccattgctggggctccgaatactgatggcatagatccagattcttgtgaagatgtgttgatagagaactgttacatcagcgttggtgatgatggcatcgcaataaagagtggatgggatcagtatggaattgcttatggacgaccttcaaagaatatactcattcgaaaccttgtcattcgttccaatgtcagtgctggtgtatcaataggaagtgagatgtctggtggagtgtcaaatgtcactgtggaaaacctctttatctggaactcaagacgtgctgtacgcatcaaaacagcacctggaagaggaggatacgttcgagatataacatacaagaacttgacatttgaaaacgttagggtgggaatcgtcatcaaaacagattacaatgaacatgctgacgagagttttgaccccaaagctgtcccattactggaaaacataagctacacaacaatccacnggtgagggagttcgcgtgcctgttcaaatccacggtagcaaagaaatctgggtgagaaacgtcacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="56547" stop="54164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56247" g_stop="55996" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55995" i_stop="55552" i_length="444">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55551" g_stop="55398" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="406" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55397" i_stop="54803" i_length="595">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54802" g_stop="54464" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="746" r_length="340" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E262054" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56247" e_stop="55996"/>
          <exon e_start="55551" e_stop="55398"/>
          <exon e_start="54802" e_stop="54464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGCATAATGGTACAATTAATGGGCAGGGTCAAGCATGGTGGAAGAAATTCCGGCAGAAGCTTCTTAACCATTCCCGAGGACCGCTCGTGCAGATCATGTGGTCTACTGACATCCTAATATCAAATATAACTTTACAAGATTCTCCCTTTTGGACACTCCATCCATATGACTGCAAGAATGTAACAATCAGGAATGTTACAATCCTGGCACCCATTGCTGGGGCTCCGAATACTGATGGCATAGATCCAGGTGAGTCTTTGATAGGTTTAAATATATCTTAGGGTTAGTTAAGACATAGCCAACATAGATATATCTATTTTGCTATCATATTTTCCCTGCTTCAAAAACTTCTCTTCTGAATCGAGGGTCTATTGGAAACAGCCACCCTACCCCACAAAGGTAGGGGTAAGGTCTGCGTACATTCTACCCTTCCCAGACCCCACTTGTGGGACTTCATTGGGTATGTTGTTGTTAGTTAAGCAGCTCAAGTTTTGACATATTAATTTGCTATATCTTTCAGTTCAATGCGATCCTTTTTTGCAAAAAAATTAAGTTCTGAACAGGGTTTTGCTGAAATGTGAATCTGATGTTGACATTACTCTAATATCCACTCTTGATACTTTCTTATACTTCTTATTTTCTGTTACCAGCCCCTCAGTATAAGCTTCTAATGTATTTTAATGGAGTGATCAGATTCTTGTGAAGATGTGTTGATAGAGAACTGTTACATCAGCGTTGGTGATGATGGCATCGCAATAAAGAGTGGATGGGATCAGTATGGAATTGCTTATGGACGACCTTCAAAGAATATACTCATTCGAAACCTTGTCATTCGTTCCAATGTCAGGTGAGGTTTCCATATAGGCATGATCATTTACATTGCTTTCATGATTGGATGTGTCTGAGAACAATTGCATCCGGGGGTGTTATAGATGTTCAAAAAATCAAATCCCTTTTTTCCTTTCGTACATTTGAGCAAATGTTCTTTGAACATTGACAGTTGGCCTGCTGGTCAGCCACTTGTTGGTTTGATGAGGCATAACCTTTTTTTGGTCAACGATCATTTTAGTAACGTCTTGCAACTATTACCGGACTGAAGTTGAGTTGATTGATGATTGAAGGCGTAACACATAAAGAGACACTCAGACTTCAAACTTTGAGAGTACACATATAGACACCTCAACATGTATTCCATTGTGTCAGTTAAACACTCCAACTTACAAAGTGATCATCTAGACACCTCCAAAAATTGTGTCACGTCAGCTTAGGGTGTCCGCGAGACATAATGGGGGACGAGTTGGAGTATTTAGTTGTCAGTTGAGGTGTCTAGATGTGCCCTCTCAAAGTTGGATGGCTTGCCAGTGGAGGCCATGTTTGAGTACATATTTATGATTTATGCCAATATATTACTAGGATCTAACTCTGGGTGAGCTACATTGCAGTGCTGGTGTATCAATAGGAAGTGAGATGTCTGGTGGAGTGTCAAATGTCACTGTGGAAAACCTCTTTATCTGGAACTCAAGACGTGCTGTACGCATCAAAACAGCACCTGGAAGAGGAGGATACGTTCGAGATATAACATACAAGAACTTGACATTTGAAAACGTTAGGGTGGGAATCGTCATCAAAACAGATTACAATGAACATGCTGACGAGAGTTTTGACCCCAAAGCTGTCCCATTACTGGAAAACATAAGCTACACAACAATCCAC-GGTGAGGGAGTTCGCGTGCCTGTTCAAATCCACGGTAGCAAAGAAATCTGGGTGAGAAACGTCACTTT</genome_strand>
        <mrna_strand>CAGGGCATAATGGTACAATTAATGGGCAGGGTCAAGCATGGTGGAAGAAATTCCGGCAGAAGCTTCTTAACCATTCCCGAGGACCGCTCGTGCAGATCATGTGGTCTACTGACATCCTAATATCAAATATAACTTTACAAGATTCTCCCTTTTGGACACTCCATCCATATGACTGCAAGAATGTAACAATCAGGAATGTTACAATCCTGGCACCCATTGCTGGGGCTCCGAATACTGATGGCATAGATCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGTGAAGATGTGTTGATAGAGAACTGTTACATCAGCGTTGGTGATGATGGCATCGCAATAAAGAGTGGATGGGATCAGTATGGAATTGCTTATGGACGACCTTCAAAGAATATACTCATTCGAAACCTTGTCATTCGTTCCAATGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGTGTATCAATAGGAAGTGAGATGTCTGGTGGAGTGTCAAATGTCACTGTGGAAAACCTCTTTATCTGGAACTCAAGACGTGCTGTACGCATCAAAACAGCACCTGGAAGAGGAGGATACGTTCGAGATATAACATACAAGAACTTGACATTTGAAAACGTTAGGGTGGGAATCGTCATCAAAACAGATTACAATGAACATGCTGACGAGAGTTTTGACCCCAAAGCTGTCCCATTACTGGAAAACATAAGCTACACAACAATCCACNGGTGAGGGAGTTCGCGTGCCTGTTCAAATCCACGGTAGCAAAGAAATCTGGGTGAGAAACGTCACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264153" ref_strand="+" ref_description="SGN-E264153 [cLEG-64-J21]">
      <seq>cagggcataatggtacaattaatgggcagggtcaagcatggtggaagaaattccggcagaagcttcttaaccattcccgaggaccgctcgtgcagatcatgtggtctactgacatcctaatatcaaatataactttacaagattctcccttttggacactccatccatatgactgcaagaatgtaacaatcaggaatgttacaatcctggcacccattgctggggctccgaatactgatggcatagatccagattcttgtgaagatgtgttgatagagaactgttacatcagcgttggtgatgatggcatcgcaataaagagtggatgggatcagtatggaattgcttatggacgaccttcaaagaatatactcattcgaaaccttgtcattcgttccaatgtcagtgctggtgtatcaataggaagtgagatgtctggtggagtgtcaaatgtcactgtggaaaacctctttatctggaactcaagacgtgctgtacgcatcaaaacagcacctggaagaggaggatacgttcgagatataacatacaagaacttgacatttgaaaacgttagggtgggaatcgtcatcaaaacagattacaatgaacatgctgacgagagttttgaccccaaagctgtcccattactggaaaacataagctacacaacaatccacggtgagggagttcgcgtgcctgttcaaatccacggtagcaaagaaatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="56547" stop="54181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56247" g_stop="55996" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55995" i_stop="55552" i_length="444">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55551" g_stop="55398" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="406" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55397" i_stop="54803" i_length="595">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54802" g_stop="54481" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="728" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E264153" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56247" e_stop="55996"/>
          <exon e_start="55551" e_stop="55398"/>
          <exon e_start="54802" e_stop="54481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGCATAATGGTACAATTAATGGGCAGGGTCAAGCATGGTGGAAGAAATTCCGGCAGAAGCTTCTTAACCATTCCCGAGGACCGCTCGTGCAGATCATGTGGTCTACTGACATCCTAATATCAAATATAACTTTACAAGATTCTCCCTTTTGGACACTCCATCCATATGACTGCAAGAATGTAACAATCAGGAATGTTACAATCCTGGCACCCATTGCTGGGGCTCCGAATACTGATGGCATAGATCCAGGTGAGTCTTTGATAGGTTTAAATATATCTTAGGGTTAGTTAAGACATAGCCAACATAGATATATCTATTTTGCTATCATATTTTCCCTGCTTCAAAAACTTCTCTTCTGAATCGAGGGTCTATTGGAAACAGCCACCCTACCCCACAAAGGTAGGGGTAAGGTCTGCGTACATTCTACCCTTCCCAGACCCCACTTGTGGGACTTCATTGGGTATGTTGTTGTTAGTTAAGCAGCTCAAGTTTTGACATATTAATTTGCTATATCTTTCAGTTCAATGCGATCCTTTTTTGCAAAAAAATTAAGTTCTGAACAGGGTTTTGCTGAAATGTGAATCTGATGTTGACATTACTCTAATATCCACTCTTGATACTTTCTTATACTTCTTATTTTCTGTTACCAGCCCCTCAGTATAAGCTTCTAATGTATTTTAATGGAGTGATCAGATTCTTGTGAAGATGTGTTGATAGAGAACTGTTACATCAGCGTTGGTGATGATGGCATCGCAATAAAGAGTGGATGGGATCAGTATGGAATTGCTTATGGACGACCTTCAAAGAATATACTCATTCGAAACCTTGTCATTCGTTCCAATGTCAGGTGAGGTTTCCATATAGGCATGATCATTTACATTGCTTTCATGATTGGATGTGTCTGAGAACAATTGCATCCGGGGGTGTTATAGATGTTCAAAAAATCAAATCCCTTTTTTCCTTTCGTACATTTGAGCAAATGTTCTTTGAACATTGACAGTTGGCCTGCTGGTCAGCCACTTGTTGGTTTGATGAGGCATAACCTTTTTTTGGTCAACGATCATTTTAGTAACGTCTTGCAACTATTACCGGACTGAAGTTGAGTTGATTGATGATTGAAGGCGTAACACATAAAGAGACACTCAGACTTCAAACTTTGAGAGTACACATATAGACACCTCAACATGTATTCCATTGTGTCAGTTAAACACTCCAACTTACAAAGTGATCATCTAGACACCTCCAAAAATTGTGTCACGTCAGCTTAGGGTGTCCGCGAGACATAATGGGGGACGAGTTGGAGTATTTAGTTGTCAGTTGAGGTGTCTAGATGTGCCCTCTCAAAGTTGGATGGCTTGCCAGTGGAGGCCATGTTTGAGTACATATTTATGATTTATGCCAATATATTACTAGGATCTAACTCTGGGTGAGCTACATTGCAGTGCTGGTGTATCAATAGGAAGTGAGATGTCTGGTGGAGTGTCAAATGTCACTGTGGAAAACCTCTTTATCTGGAACTCAAGACGTGCTGTACGCATCAAAACAGCACCTGGAAGAGGAGGATACGTTCGAGATATAACATACAAGAACTTGACATTTGAAAACGTTAGGGTGGGAATCGTCATCAAAACAGATTACAATGAACATGCTGACGAGAGTTTTGACCCCAAAGCTGTCCCATTACTGGAAAACATAAGCTACACAACAATCCACGGTGAGGGAGTTCGCGTGCCTGTTCAAATCCACGGTAGCAAAGAAATCTGG</genome_strand>
        <mrna_strand>CAGGGCATAATGGTACAATTAATGGGCAGGGTCAAGCATGGTGGAAGAAATTCCGGCAGAAGCTTCTTAACCATTCCCGAGGACCGCTCGTGCAGATCATGTGGTCTACTGACATCCTAATATCAAATATAACTTTACAAGATTCTCCCTTTTGGACACTCCATCCATATGACTGCAAGAATGTAACAATCAGGAATGTTACAATCCTGGCACCCATTGCTGGGGCTCCGAATACTGATGGCATAGATCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGTGAAGATGTGTTGATAGAGAACTGTTACATCAGCGTTGGTGATGATGGCATCGCAATAAAGAGTGGATGGGATCAGTATGGAATTGCTTATGGACGACCTTCAAAGAATATACTCATTCGAAACCTTGTCATTCGTTCCAATGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGTGTATCAATAGGAAGTGAGATGTCTGGTGGAGTGTCAAATGTCACTGTGGAAAACCTCTTTATCTGGAACTCAAGACGTGCTGTACGCATCAAAACAGCACCTGGAAGAGGAGGATACGTTCGAGATATAACATACAAGAACTTGACATTTGAAAACGTTAGGGTGGGAATCGTCATCAAAACAGATTACAATGAACATGCTGACGAGAGTTTTGACCCCAAAGCTGTCCCATTACTGGAAAACATAAGCTACACAACAATCCACGGTGAGGGAGTTCGCGTGCCTGTTCAAATCCACGGTAGCAAAGAAATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551377" ref_strand="+" ref_description="SGN-E551377 [TUS-55-L14]">
      <seq>ccagggcataatggtacaattaatgggcagggtcaagcatggtggaagaaattccggcagaagcttcttaaccattcccgaggaccgctcgtgcagatcatgtggtctactgacatcctaatatcaaatataactttacaagattctcccttttggacactccatccatatgactgcaagaatgtaacaatcaggaatgttacaatcctggcacccattgctggggctccgaatactgatggcatagatccagattcttgtgaagatgtgttgatagagaactgttacatcagcgttggtgatgatggcatcgcaataaagagtggatgggatcagtatggaattgcttatggacgaccttcaaagaatatactcattcgaaaccttgtcattcgttccaatgtcagtgctggtgtatcaataggaagtgagatgtctggtggagtgtcaaatgtcactgtggaaaacctctttatctggaactcaagacgtgctgtacgcatcanaacagcacctggaagaggaggatacgttcgagatataacatacaagaacttgacatttgaaaacgttagggtgggaatcgtcatcaaaacagatttacatgaacatgctgacgagagttttgaccccaaagctgtcccattactggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="56547" stop="54256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56248" g_stop="55996" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55995" i_stop="55552" i_length="444">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55551" g_stop="55398" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="407" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55397" i_stop="54803" i_length="595">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54802" g_stop="54556" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="654" r_length="247" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E551377" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56248" e_stop="55996"/>
          <exon e_start="55551" e_stop="55398"/>
          <exon e_start="54802" e_stop="54556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGGCATAATGGTACAATTAATGGGCAGGGTCAAGCATGGTGGAAGAAATTCCGGCAGAAGCTTCTTAACCATTCCCGAGGACCGCTCGTGCAGATCATGTGGTCTACTGACATCCTAATATCAAATATAACTTTACAAGATTCTCCCTTTTGGACACTCCATCCATATGACTGCAAGAATGTAACAATCAGGAATGTTACAATCCTGGCACCCATTGCTGGGGCTCCGAATACTGATGGCATAGATCCAGGTGAGTCTTTGATAGGTTTAAATATATCTTAGGGTTAGTTAAGACATAGCCAACATAGATATATCTATTTTGCTATCATATTTTCCCTGCTTCAAAAACTTCTCTTCTGAATCGAGGGTCTATTGGAAACAGCCACCCTACCCCACAAAGGTAGGGGTAAGGTCTGCGTACATTCTACCCTTCCCAGACCCCACTTGTGGGACTTCATTGGGTATGTTGTTGTTAGTTAAGCAGCTCAAGTTTTGACATATTAATTTGCTATATCTTTCAGTTCAATGCGATCCTTTTTTGCAAAAAAATTAAGTTCTGAACAGGGTTTTGCTGAAATGTGAATCTGATGTTGACATTACTCTAATATCCACTCTTGATACTTTCTTATACTTCTTATTTTCTGTTACCAGCCCCTCAGTATAAGCTTCTAATGTATTTTAATGGAGTGATCAGATTCTTGTGAAGATGTGTTGATAGAGAACTGTTACATCAGCGTTGGTGATGATGGCATCGCAATAAAGAGTGGATGGGATCAGTATGGAATTGCTTATGGACGACCTTCAAAGAATATACTCATTCGAAACCTTGTCATTCGTTCCAATGTCAGGTGAGGTTTCCATATAGGCATGATCATTTACATTGCTTTCATGATTGGATGTGTCTGAGAACAATTGCATCCGGGGGTGTTATAGATGTTCAAAAAATCAAATCCCTTTTTTCCTTTCGTACATTTGAGCAAATGTTCTTTGAACATTGACAGTTGGCCTGCTGGTCAGCCACTTGTTGGTTTGATGAGGCATAACCTTTTTTTGGTCAACGATCATTTTAGTAACGTCTTGCAACTATTACCGGACTGAAGTTGAGTTGATTGATGATTGAAGGCGTAACACATAAAGAGACACTCAGACTTCAAACTTTGAGAGTACACATATAGACACCTCAACATGTATTCCATTGTGTCAGTTAAACACTCCAACTTACAAAGTGATCATCTAGACACCTCCAAAAATTGTGTCACGTCAGCTTAGGGTGTCCGCGAGACATAATGGGGGACGAGTTGGAGTATTTAGTTGTCAGTTGAGGTGTCTAGATGTGCCCTCTCAAAGTTGGATGGCTTGCCAGTGGAGGCCATGTTTGAGTACATATTTATGATTTATGCCAATATATTACTAGGATCTAACTCTGGGTGAGCTACATTGCAGTGCTGGTGTATCAATAGGAAGTGAGATGTCTGGTGGAGTGTCAAATGTCACTGTGGAAAACCTCTTTATCTGGAACTCAAGACGTGCTGTACGCATCAAAACAGCACCTGGAAGAGGAGGATACGTTCGAGATATAACATACAAGAACTTGACATTTGAAAACGTTAGGGTGGGAATCGTCATCAAAACAGATTACAATGAACATGCTGACGAGAGTTTTGACCCCAAAGCTGTCCCATTACTGGAA</genome_strand>
        <mrna_strand>CCAGGGCATAATGGTACAATTAATGGGCAGGGTCAAGCATGGTGGAAGAAATTCCGGCAGAAGCTTCTTAACCATTCCCGAGGACCGCTCGTGCAGATCATGTGGTCTACTGACATCCTAATATCAAATATAACTTTACAAGATTCTCCCTTTTGGACACTCCATCCATATGACTGCAAGAATGTAACAATCAGGAATGTTACAATCCTGGCACCCATTGCTGGGGCTCCGAATACTGATGGCATAGATCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGTGAAGATGTGTTGATAGAGAACTGTTACATCAGCGTTGGTGATGATGGCATCGCAATAAAGAGTGGATGGGATCAGTATGGAATTGCTTATGGACGACCTTCAAAGAATATACTCATTCGAAACCTTGTCATTCGTTCCAATGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGTGTATCAATAGGAAGTGAGATGTCTGGTGGAGTGTCAAATGTCACTGTGGAAAACCTCTTTATCTGGAACTCAAGACGTGCTGTACGCATCANAACAGCACCTGGAAGAGGAGGATACGTTCGAGATATAACATACAAGAACTTGACATTTGAAAACGTTAGGGTGGGAATCGTCATCAAAACAGATTTACATGAACATGCTGACGAGAGTTTTGACCCCAAAGCTGTCCCATTACTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689014" ref_strand="+" ref_description="SGN-E689014 [t3_tus_55_L14]">
      <seq>gggcataatggtacaattaatgggcagggtcaagcatggtggaagaaattccggcagaagcttcttaaccattcccgaggaccgctcgtgcagatcatgtggtctactgacatcctaatatcaaatataactttacaagattctcccttttggacactccatccatatgactgcaagaatgtaacaatcaggaatgttacaatcctggcacccattgctggggctccgaatactgatggcatagatccagattcttgtgaagatgtgttgatagagaactgttacatcagcgttggtgatgatggcatcgcaataaagagtggatgggatcagtatggaattgcttatggacgaccttcaaagaatatactcattcgaaaccttgtcattcgttccaatgtcagtgctggtgtatcaataggaagtgagatgtctggtggagtgtcaaatgtcactgtggaaaacctctttatctggaactcaagacgtgctgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="56545" stop="54412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56245" g_stop="55996" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55995" i_stop="55552" i_length="444">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55551" g_stop="55398" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="404" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55397" i_stop="54803" i_length="595">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54802" g_stop="54712" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="495" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E689014" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56245" e_stop="55996"/>
          <exon e_start="55551" e_stop="55398"/>
          <exon e_start="54802" e_stop="54712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCATAATGGTACAATTAATGGGCAGGGTCAAGCATGGTGGAAGAAATTCCGGCAGAAGCTTCTTAACCATTCCCGAGGACCGCTCGTGCAGATCATGTGGTCTACTGACATCCTAATATCAAATATAACTTTACAAGATTCTCCCTTTTGGACACTCCATCCATATGACTGCAAGAATGTAACAATCAGGAATGTTACAATCCTGGCACCCATTGCTGGGGCTCCGAATACTGATGGCATAGATCCAGGTGAGTCTTTGATAGGTTTAAATATATCTTAGGGTTAGTTAAGACATAGCCAACATAGATATATCTATTTTGCTATCATATTTTCCCTGCTTCAAAAACTTCTCTTCTGAATCGAGGGTCTATTGGAAACAGCCACCCTACCCCACAAAGGTAGGGGTAAGGTCTGCGTACATTCTACCCTTCCCAGACCCCACTTGTGGGACTTCATTGGGTATGTTGTTGTTAGTTAAGCAGCTCAAGTTTTGACATATTAATTTGCTATATCTTTCAGTTCAATGCGATCCTTTTTTGCAAAAAAATTAAGTTCTGAACAGGGTTTTGCTGAAATGTGAATCTGATGTTGACATTACTCTAATATCCACTCTTGATACTTTCTTATACTTCTTATTTTCTGTTACCAGCCCCTCAGTATAAGCTTCTAATGTATTTTAATGGAGTGATCAGATTCTTGTGAAGATGTGTTGATAGAGAACTGTTACATCAGCGTTGGTGATGATGGCATCGCAATAAAGAGTGGATGGGATCAGTATGGAATTGCTTATGGACGACCTTCAAAGAATATACTCATTCGAAACCTTGTCATTCGTTCCAATGTCAGGTGAGGTTTCCATATAGGCATGATCATTTACATTGCTTTCATGATTGGATGTGTCTGAGAACAATTGCATCCGGGGGTGTTATAGATGTTCAAAAAATCAAATCCCTTTTTTCCTTTCGTACATTTGAGCAAATGTTCTTTGAACATTGACAGTTGGCCTGCTGGTCAGCCACTTGTTGGTTTGATGAGGCATAACCTTTTTTTGGTCAACGATCATTTTAGTAACGTCTTGCAACTATTACCGGACTGAAGTTGAGTTGATTGATGATTGAAGGCGTAACACATAAAGAGACACTCAGACTTCAAACTTTGAGAGTACACATATAGACACCTCAACATGTATTCCATTGTGTCAGTTAAACACTCCAACTTACAAAGTGATCATCTAGACACCTCCAAAAATTGTGTCACGTCAGCTTAGGGTGTCCGCGAGACATAATGGGGGACGAGTTGGAGTATTTAGTTGTCAGTTGAGGTGTCTAGATGTGCCCTCTCAAAGTTGGATGGCTTGCCAGTGGAGGCCATGTTTGAGTACATATTTATGATTTATGCCAATATATTACTAGGATCTAACTCTGGGTGAGCTACATTGCAGTGCTGGTGTATCAATAGGAAGTGAGATGTCTGGTGGAGTGTCAAATGTCACTGTGGAAAACCTCTTTATCTGGAACTCAAGACGTGCTGTA</genome_strand>
        <mrna_strand>GGGCATAATGGTACAATTAATGGGCAGGGTCAAGCATGGTGGAAGAAATTCCGGCAGAAGCTTCTTAACCATTCCCGAGGACCGCTCGTGCAGATCATGTGGTCTACTGACATCCTAATATCAAATATAACTTTACAAGATTCTCCCTTTTGGACACTCCATCCATATGACTGCAAGAATGTAACAATCAGGAATGTTACAATCCTGGCACCCATTGCTGGGGCTCCGAATACTGATGGCATAGATCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGTGAAGATGTGTTGATAGAGAACTGTTACATCAGCGTTGGTGATGATGGCATCGCAATAAAGAGTGGATGGGATCAGTATGGAATTGCTTATGGACGACCTTCAAAGAATATACTCATTCGAAACCTTGTCATTCGTTCCAATGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGTGTATCAATAGGAAGTGAGATGTCTGGTGGAGTGTCAAATGTCACTGTGGAAAACCTCTTTATCTGGAACTCAAGACGTGCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315135" ref_strand="+" ref_description="SGN-E315135 [cTOA-24-G10]">
      <seq>ctaatcctgaccactacacttcaccttccaattcttgaaactccattaatgaatctttaaaccccatttgatttcttgatgtttcccacttagcaatttatagaaagtttaaaaattgaatctttgattggttctaggaattgggttgttcataattttctgtattaagatcccaagattaattcttttttggtatattatatggtggaaacagtgacatcgtcgttttggtggcggtggacgcaaccccatcaccacccacgtcgatgggtgccgtcagttttcaccacccacaaagccattatcactgctgtgtggatcgctttcttggtaaccgttttctggtggcaggttgatgctaccgccggaatcttgattttccggcgggttttcccggcgagggaggtgccgaagttccggccggtggcgtttaacttgacggactttggtggggttggggatggtgtaactgttaatacggaggcgtttgagaaggcaatattagctattgctaaacttgggaagaaaggtggagggcagctcaatgtgccaccgggatattggctgacggctccgtttaatcttactagccatatgactctgttccttgctgagggagctgntatattgggtattgatgatgagaagtactggcctctcatgcctcccttaccttcatatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="60885" stop="57376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60585" g_stop="59947" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59946" i_stop="57720" i_length="2227">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57719" g_stop="57676" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="683" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E315135" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60585" e_stop="59947"/>
          <exon e_start="57719" e_stop="57676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATCCTGACCACTACACTTCACCTTCCAATTCTTGAAACTCCATTAATGAATCTTTAAACCCCATTTGATTTCTTGATGTTTCCCACTTAGCAATTTATAGAAAGTTTAAAAATTGAATCTTTGATTGGTTCTAGGAATTGGGTTGTTCATAATTTTCTGTATTAAGATCCCAAGATTAATTCTTTTTTGGTATATTATATGGTGGAAACAGTGACATCGTCGTTTTGGTGGCGGTGGACGCAACCCCATCACCACCCACGTCGATGGGTGCCGTCAGTTTTCACCACCCACAAAGCCATTATCACTGCTGTGTGGATCGCTTTCTTGGTAACCGTTTTCTGGTGGCAGGTTGATGCTACCGCCGGAATCTTGATTTTCCGGCGGGTTTTCCCGGCGAGGGAGGTGCCGAAGTTCCGGCCGGTGGCGTTTAACTTGACGGACTTTGGTGGGGTTGGGGATGGTGTAACTGTTAATACGGAGGCGTTTGAGAAGGCAATATTAGCTATTGCTAAACTTGGGAAGAAAGGTGGAGGGCAGCTCAATGTGCCACCGGGATATTGGCTGACGGCTCCGTTTAATCTTACTAGCCATATGACTCTGTTCCTTGCTGAGGGAGCTGTTATATTGGGTATTGATGTAAGTTTTTAGCAAGTTTATTAATATGTTAATAGCATTACAAGTTTTAATCTTTGCTCAATGAACTTAGCAGGTTTCATGTTGTTGTTCTCATTTATGCTAATTGTATGTTGTTTCTTATTTGATTGTTTGGTTAGCTTTGCTTAGAACTTTGAGTTTTACATAGTGCTAATTGCTTAGTGTCTATGTTGCTTGGACTCTTCAAAAAGTTGATAGGTGTGTGTCGGATCCTTCAAAAGTAGTGCCTTTTTGAAGTATTCGACATGGATGCAGAATCATTTTTGGAGAATCCGAGCAACATAGCTCTTAGTGTTACTTTTATAACCGTGTGATTGGTGGTGTTAGGGCCAGCTTGTGCGTACTTGGACTGATTTCATGGGTATTGCTACCTCCCACCAGCACAGTTCTGTCCGTTGAGGCTAGGATAGATGGGAGGGGAATCACCAAACTAACTGTTTACTGTTACTTATGGAAGCTTTTTATGATTATTGGTGGATTGGTCAGGTAGCTTGGATTTGTATGATACTGATAGTCCAGCTAGCTTTGGATTAATTGAGTTTATTTTGGATTGATAAGAAGTGAGAGATGCTGTTGATTTCGTTAAAATCAGTAATCACTCATAATTCTCTCAAAAAAAAAACAGTATCAATCATCTGTTTTTAAGAAGACGACAAAATAGAGAGAAAGAGAACAGGAGAGCTATTTAAGTGTATTTGTGATAAAGGAGCTGAAAGCTTAAAAGCTTACAACTACTTCACTCCAACCATACCTAATCAAAAAGAAAGAAAAACTAGTTGAGTCCCAACCATGGTTTGCTAACACCTCAACTGTGCTATCCGTTTTACAGTTTCTATTATCTTGTGTGGTTGTATTTCCTAATTTATGTTTACTGTTCAGAGCTGAGGATCAGCGCAGTTTCTTGTGATTATGGTGGCTGAGAATTCCATTTGTAGTATTCTTTGTGGATAAAACTCTGGCCTTTTATATTATGATCCACCTAGCGACACCATCTCAAACGAATCCATCTTAACGTCCACATTTTTGCGACACTCGTCTTGTGGATATTTTTTCACCTCAGAACCGTTTTGTGGAACATGCTTTTCACTTTTGTCCAATGGTGAATGTAGCTAGCAAACTATGGGTTCAATTGAACCCAAAAATTTTTCTATGGAGCTTAGTAGTTTTTCAGTAAATATTATATTTGAACGTATAAGTCTAAAAGTGTAATAAGTATAGTAGTAAAATTATAAAGATTGAACCCATCAAATTAAAATTCCGAATCTTCCTCTGCTTTTGTCGGCATCCTCCTATCGCATTACACTCTCATTGCACTCATCCATTTCATCCGTCCTATTTTAATTCTGTGTTCCATCTTCATATATCTTACGGTTCTCCTAGAAGGTTCTAATATAGAGCTTAGCTATCTTCATTTTCCAACTTTTGTCAGCAAAGAGACTTTACGATCTAAAATTTTGTAGCGTTCTAGAGTCATAGCCTAGTTATCTGTACCTTTTAATTAGGTTAACAATATAAGTGATTCAAGTGCAAATCGTTCCAGTGGACTAGCCAAATGGAAAGCTGGTTCTGCTTTCTGGAAACGAGAGTAAAAAAGAAGAAGCCAATAGACTGTTCTTCATAAACAATTTTTCTAGCACACACTAATCTGATTCATCCAAAACCAAATCCAAATATGCACTGTTGAAAAGCAAAACAAGACAATCATTACTCAACAGTTTTCAGATCGAATTGCCGAGTGTGTGTATCTCTGTGTGTGTGCTTGTCATTGTAGGGGAATTTTCCTGGAAATAACAGATAGGAGGAAGTGCTTTAGAATAGCCCTGTTGCATACAAAATATGAATTCCTTACAAACGAATTGGTTGGTCCGACTAGTTTAACTTAAGAAATTATCCATTTACTTGTCAGTTCCGAGCAATGTTGTGTAGGGAACATTTTATGTGGAGACAGTTTTGCCTGCAAACTTCACTTTTGTTTGCTAGTTATAATTGGCAAAAGGAAAGTGTCACTACGTTGACATTTTTCTGCCAACTTATGGAAATATTGTTCTCTCGCAATTATTTTCTCTACTATCAAAATAACTTGATAATGTCTCATCTGGAACATGAGTAACCTTCCTTAGTTTGAAGCCTGCTTTTTCATCTTTTAGTAGAGAACTAACGGCAGCTATTTTACTTCTGTATTTCTATTTGTATTTATGGCATTCAACAGGATGAGAAGTACTGGCCTCTCATGCCTCCCTTACCTTCATATGG</genome_strand>
        <mrna_strand>CTAATCCTGACCACTACACTTCACCTTCCAATTCTTGAAACTCCATTAATGAATCTTTAAACCCCATTTGATTTCTTGATGTTTCCCACTTAGCAATTTATAGAAAGTTTAAAAATTGAATCTTTGATTGGTTCTAGGAATTGGGTTGTTCATAATTTTCTGTATTAAGATCCCAAGATTAATTCTTTTTTGGTATATTATATGGTGGAAACAGTGACATCGTCGTTTTGGTGGCGGTGGACGCAACCCCATCACCACCCACGTCGATGGGTGCCGTCAGTTTTCACCACCCACAAAGCCATTATCACTGCTGTGTGGATCGCTTTCTTGGTAACCGTTTTCTGGTGGCAGGTTGATGCTACCGCCGGAATCTTGATTTTCCGGCGGGTTTTCCCGGCGAGGGAGGTGCCGAAGTTCCGGCCGGTGGCGTTTAACTTGACGGACTTTGGTGGGGTTGGGGATGGTGTAACTGTTAATACGGAGGCGTTTGAGAAGGCAATATTAGCTATTGCTAAACTTGGGAAGAAAGGTGGAGGGCAGCTCAATGTGCCACCGGGATATTGGCTGACGGCTCCGTTTAATCTTACTAGCCATATGACTCTGTTCCTTGCTGAGGGAGCTGNTATATTGGGTATTGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGAAGTACTGGCCTCTCATGCCTCCCTTACCTTCATATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329698" ref_strand="+" ref_description="SGN-E329698 [cTOD-3-F20]">
      <seq>ttcttcttcttcctttgaatgtactcaaccattccactaatcctgaccactacacttcaccttccaattcttgaaactccattaatgaatctttaaaccccatttgatttcttgatgtttcccacttagcaatttatagaaagtttaaaaattgaatctttgattggttctaggaattgggttgttcataattttctgtattaagatcccaagattaattcttttttggtatattatatggtggaaacagtgacatcgtcgttttggtggcggtggacgcaaccccatcaccacccacgtcgatgggtgccgtcagttttcaccacccacaaagccattatcactgctgtgtggatcgctttcttggtaaccgttttctggtggcaggttgatgctaccgccggaatcttgattttccggcgggttttcccggcgagggaggtgccgaagttccggccggtggcgtttaacttgacggactttggtggggttggggatggtgtaactgttaatacggaggcgtttgagaaggcaatattagctattgctaaacttgggaagaaaggtggagggcagctcaatgtgccaccgggatattggctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="60921" stop="59718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60621" g_stop="60018" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E329698" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60621" e_stop="60018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTTCCTTTGAATGTACTCAACCATTCCACTAATCCTGACCACTACACTTCACCTTCCAATTCTTGAAACTCCATTAATGAATCTTTAAACCCCATTTGATTTCTTGATGTTTCCCACTTAGCAATTTATAGAAAGTTTAAAAATTGAATCTTTGATTGGTTCTAGGAATTGGGTTGTTCATAATTTTCTGTATTAAGATCCCAAGATTAATTCTTTTTTGGTATATTATATGGTGGAAACAGTGACATCGTCGTTTTGGTGGCGGTGGACGCAACCCCATCACCACCCACGTCGATGGGTGCCGTCAGTTTTCACCACCCACAAAGCCATTATCACTGCTGTGTGGATCGCTTTCTTGGTAACCGTTTTCTGGTGGCAGGTTGATGCTACCGCCGGAATCTTGATTTTCCGGCGGGTTTTCCCGGCGAGGGAGGTGCCGAAGTTCCGGCCGGTGGCGTTTAACTTGACGGACTTTGGTGGGGTTGGGGATGGTGTAACTGTTAATACGGAGGCGTTTGAGAAGGCAATATTAGCTATTGCTAAACTTGGGAAGAAAGGTGGAGGGCAGCTCAATGTGCCACCGGGATATTGGCTGA</genome_strand>
        <mrna_strand>TTCTTCTTCTTCCTTTGAATGTACTCAACCATTCCACTAATCCTGACCACTACACTTCACCTTCCAATTCTTGAAACTCCATTAATGAATCTTTAAACCCCATTTGATTTCTTGATGTTTCCCACTTAGCAATTTATAGAAAGTTTAAAAATTGAATCTTTGATTGGTTCTAGGAATTGGGTTGTTCATAATTTTCTGTATTAAGATCCCAAGATTAATTCTTTTTTGGTATATTATATGGTGGAAACAGTGACATCGTCGTTTTGGTGGCGGTGGACGCAACCCCATCACCACCCACGTCGATGGGTGCCGTCAGTTTTCACCACCCACAAAGCCATTATCACTGCTGTGTGGATCGCTTTCTTGGTAACCGTTTTCTGGTGGCAGGTTGATGCTACCGCCGGAATCTTGATTTTCCGGCGGGTTTTCCCGGCGAGGGAGGTGCCGAAGTTCCGGCCGGTGGCGTTTAACTTGACGGACTTTGGTGGGGTTGGGGATGGTGTAACTGTTAATACGGAGGCGTTTGAGAAGGCAATATTAGCTATTGCTAAACTTGGGAAGAAAGGTGGAGGGCAGCTCAATGTGCCACCGGGATATTGGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271147" ref_strand="+" ref_description="SGN-E271147 [cLEM-22-F14]">
      <seq>gaccactacacttcaccttccaattcttgaaactccattaatgaatctttaaaccccatttgatttcttgatgtttcccacttagcaatttatagaaagtttaaaaattgaatctttgattggttctaggaattgggttgttcataattttctgtattaagatcccaagattaattcttttttggtatattatatggtggaaacagtgacatcgtcgttttggtggcggtggacgcaaccccatcaccacccacgtcgatgggtgccgtcagttttcaccacccacaaagccattatcactgctgtgtggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="60877" stop="59965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60577" g_stop="60265" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E271147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60577" e_stop="60265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCACTACACTTCACCTTCCAATTCTTGAAACTCCATTAATGAATCTTTAAACCCCATTTGATTTCTTGATGTTTCCCACTTAGCAATTTATAGAAAGTTTAAAAATTGAATCTTTGATTGGTTCTAGGAATTGGGTTGTTCATAATTTTCTGTATTAAGATCCCAAGATTAATTCTTTTTTGGTATATTATATGGTGGAAACAGTGACATCGTCGTTTTGGTGGCGGTGGACGCAACCCCATCACCACCCACGTCGATGGGTGCCGTCAGTTTTCACCACCCACAAAGCCATTATCACTGCTGTGTGGATC</genome_strand>
        <mrna_strand>GACCACTACACTTCACCTTCCAATTCTTGAAACTCCATTAATGAATCTTTAAACCCCATTTGATTTCTTGATGTTTCCCACTTAGCAATTTATAGAAAGTTTAAAAATTGAATCTTTGATTGGTTCTAGGAATTGGGTTGTTCATAATTTTCTGTATTAAGATCCCAAGATTAATTCTTTTTTGGTATATTATATGGTGGAAACAGTGACATCGTCGTTTTGGTGGCGGTGGACGCAACCCCATCACCACCCACGTCGATGGGTGCCGTCAGTTTTCACCACCCACAAAGCCATTATCACTGCTGTGTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326027" ref_strand="+" ref_description="SGN-E326027 [cTOD-1-M11]">
      <seq>atacacctatccctccacacaaatctttgtcaaaacaacaacaccccaccctcacccccaccacacatgatcattccagggtccaaaacaaccaaaccaatatcaagaaaattatcaaacaccttcaaagaaaagaaaaagagaagcatttgcagattgtttctataagggggaggtggacatgtctagtaacaaacatggccgccgttcccctaacccttcatctccttcctcgagcatcgtctcctaaaaaacaccatcttttccttattcatatatccattttcttcctcatttctctatgtaatccacaattttctttctccatttccgaggacgatgccttgatcaaattcaaaaaatctttaaagaacaccacatctctagattcatcttgggttaaaggtactagtccatgtgaaaaaaacaagagatgggctcgtgttcaatgcgaacgtaacgtggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="66373" stop="67438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66671" g_stop="67138" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E326027" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66671" e_stop="67138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACCTATCCCTCCACACAAATCTTTGTCAAAACAACAACACCCCACCCCCACCCCCACCACACATGATCATTCCAGGGTCCAAAACAACCAAACCAATATCAAGAAAATTATCAAACACCTTCAAAGAAAAGAAAAAGAGAAGCATTTGCAGATTGTTTCTATAAGGGGGAGGTGGACATGTCTAGTAACAAACATGGCCGCCGTTCCCCTAACCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTTCTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAGTCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTG</genome_strand>
        <mrna_strand>ATACACCTATCCCTCCACACAAATCTTTGTCAAAACAACAACACCCCACCCTCACCCCCACCACACATGATCATTCCAGGGTCCAAAACAACCAAACCAATATCAAGAAAATTATCAAACACCTTCAAAGAAAAGAAAAAGAGAAGCATTTGCAGATTGTTTCTATAAGGGGGAGGTGGACATGTCTAGTAACAAACATGGCCGCCGTTCCCCTAACCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTTCTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAGTCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331385" ref_strand="+" ref_description="SGN-E331385 [cTOD-9-K18]">
      <seq>gcatttgcagattgtttctataagggggaggtggacatgtctagtaacaaacatggccgccgttcccctaacccttcatctccttcctcgagcatcgtctcctaaaaaacaccatcttttccttattcatatatccattttcttcctcatttctctatgtaatccacaattttctttctccatttccgaggacgatgccttgatcaaattcaaaaaatctttaaagaacaccacatctctagattcatcttgggttaaaggtactagtccatgtgaaaaaaacaagagatgggctcgtgttcaatgcgaacgtaacgtggttgaaggcctccttttaggtgaagctggcttatcaggagaacttgatattgatccattgattgcacttccaggcctccgagttcttgatatcgcgaataattcattttcaggcttaatccctgaattcttcttgcttggtgcacttaaatctatatatatagatggaaaccaattctcaggtgagattcctaaagatttctttgccaaaatggggtctcttaagaagatatggcttgcacgaaacaaattttccggagcaattcctgaatcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="66516" stop="67710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66816" g_stop="67410" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E331385" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66816" e_stop="67410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTGCAGATTGTTTCTATAAGGGGGAGGTGGACATGTCTAGTAACAAACATGGCCGCCGTTCCCCTAACCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTTCTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAGTCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTGAAGGCCTCCTTTTAGGTGAAGCTGGCTTATCAGGAGAACTTGATATTGATCCATTGATTGCACTTCCAGGCCTCCGAGTTCTTGATATCGCGAATAATTCATTTTCAGGCTTAATCCCTGAATTCTTCTTGCTTGGTGCACTTAAATCTATATATATAGATGGAAACCAATTCTCAGGTGAGATTCCTAAAGATTTCTTTGCCAAAATGGGGTCTCTTAAGAAGATATGGCTTGCACGAAACAAATTTTCCGGAGCAATTCCTGAATCATTA</genome_strand>
        <mrna_strand>GCATTTGCAGATTGTTTCTATAAGGGGGAGGTGGACATGTCTAGTAACAAACATGGCCGCCGTTCCCCTAACCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTTCTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAGTCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTGAAGGCCTCCTTTTAGGTGAAGCTGGCTTATCAGGAGAACTTGATATTGATCCATTGATTGCACTTCCAGGCCTCCGAGTTCTTGATATCGCGAATAATTCATTTTCAGGCTTAATCCCTGAATTCTTCTTGCTTGGTGCACTTAAATCTATATATATAGATGGAAACCAATTCTCAGGTGAGATTCCTAAAGATTTCTTTGCCAAAATGGGGTCTCTTAAGAAGATATGGCTTGCACGAAACAAATTTTCCGGAGCAATTCCTGAATCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362745" ref_strand="+" ref_description="SGN-E362745 [cLPP-1-P12]">
      <seq>cagattgtttctataaggggaaggtggacatgtctagtaacaaacatggccgccgttcccctaatccttcatctccttcctcgagcatcgtctcctaaaaaacaccatcttttccttattcatatatccattttcttcctcattactctatgtaatccacaattttctttctccatttccgaggacgatgccttgatcaaattcaaaaaatctttaaagaacaccacatctctagattcatcttgggttaaaggtactaatccatgtgaaaaaaacaagagatgggctcgtgttcaatgcgaacgtaacgtggttgaaggcctccttttaggtgaagctggcttatcaggagaacttgatgttgatccattgattgcacttccaggcctccgagttcttgatatcgcgaataattcattttcaggcttaatccctgaattcttcttgcttggtgcacttaaatctatatatatagatggaaaccaattctcaggtgagattcctaaagatttctttgccaaaatggggtctcttaagaagatatggcttgcacgaaacaaattttccggagcaattcctgaatcattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="66523" stop="67711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66823" g_stop="67411" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E362745" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66823" e_stop="67411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTGTTTCTATAAGGGGGAGGTGGACATGTCTAGTAACAAACATGGCCGCCGTTCCCCTAACCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTTCTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAGTCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTGAAGGCCTCCTTTTAGGTGAAGCTGGCTTATCAGGAGAACTTGATATTGATCCATTGATTGCACTTCCAGGCCTCCGAGTTCTTGATATCGCGAATAATTCATTTTCAGGCTTAATCCCTGAATTCTTCTTGCTTGGTGCACTTAAATCTATATATATAGATGGAAACCAATTCTCAGGTGAGATTCCTAAAGATTTCTTTGCCAAAATGGGGTCTCTTAAGAAGATATGGCTTGCACGAAACAAATTTTCCGGAGCAATTCCTGAATCATTAG</genome_strand>
        <mrna_strand>CAGATTGTTTCTATAAGGGGAAGGTGGACATGTCTAGTAACAAACATGGCCGCCGTTCCCCTAATCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTACTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAATCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTGAAGGCCTCCTTTTAGGTGAAGCTGGCTTATCAGGAGAACTTGATGTTGATCCATTGATTGCACTTCCAGGCCTCCGAGTTCTTGATATCGCGAATAATTCATTTTCAGGCTTAATCCCTGAATTCTTCTTGCTTGGTGCACTTAAATCTATATATATAGATGGAAACCAATTCTCAGGTGAGATTCCTAAAGATTTCTTTGCCAAAATGGGGTCTCTTAAGAAGATATGGCTTGCACGAAACAAATTTTCCGGAGCAATTCCTGAATCATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360957" ref_strand="+" ref_description="SGN-E360957 [cLPP-13-O18]">
      <seq>cacattgtctctataaggggaaggtggacatgtctagtaacaaacatggccgccgttcccctaatccttcatctccttcctcgagcatcgtctcctaaaaaacaccatcttttccttattcatatatccattttcttcctcattactctatgtaatccacaattttctttctccatttccgaggacgatgccttgatcaaattcaaaaaatctttaaagaacaccacatctctagattcatcttgggttaaaggtactaatccatgtgaaaaaaacaagagatgggctcgtgttcaatgcgaacgtaacgtggttgaaggcctccttttaggtgaagctggcttatcaggagaacttgatgttgatccattgattgcacttccaggcctccgagttcttgatatcgcgaataattcattttcaggcttaatccctgaattcttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="66523" stop="67569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66823" g_stop="67269" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E360957" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66823" e_stop="67269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTGTTTCTATAAGGGGGAGGTGGACATGTCTAGTAACAAACATGGCCGCCGTTCCCCTAACCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTTCTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAGTCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTGAAGGCCTCCTTTTAGGTGAAGCTGGCTTATCAGGAGAACTTGATATTGATCCATTGATTGCACTTCCAGGCCTCCGAGTTCTTGATATCGCGAATAATTCATTTTCAGGCTTAATCCCTGAATTCTTCTTG</genome_strand>
        <mrna_strand>CACATTGTCTCTATAAGGGGAAGGTGGACATGTCTAGTAACAAACATGGCCGCCGTTCCCCTAATCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTACTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAATCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTGAAGGCCTCCTTTTAGGTGAAGCTGGCTTATCAGGAGAACTTGATGTTGATCCATTGATTGCACTTCCAGGCCTCCGAGTTCTTGATATCGCGAATAATTCATTTTCAGGCTTAATCCCTGAATTCTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362033" ref_strand="+" ref_description="SGN-E362033 [cLPP-11-H20]">
      <seq>tttctataaggggaaggtggacatgtctagtaacaaacatggccgccgttcccctaatccttcatctccttcctcgagcatcgtctcctaaaaaacaccatcttttccttattcatatatccattttcttcctcattactctatgtaatccacaattttctttctccatttccgaggacgatgccttgatcaaattcaaaaaatctttaaagaacaccacatctctagattcatcttgggttaaaggtactaatccatgtgaaaaaaacaagagatgggctcgtgttcaatgcgaacgtaacgtggttgaaggcctccttttaggtgaagctggcttatcaggagaacttgatgttgatccattgattgcacttccaggcctccgagttcttgatatcgcgaataattcattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="66530" stop="67544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66830" g_stop="67244" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E362033" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66830" e_stop="67244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTATAAGGGGGAGGTGGACATGTCTAGTAACAAACATGGCCGCCGTTCCCCTAACCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTTCTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAGTCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTGAAGGCCTCCTTTTAGGTGAAGCTGGCTTATCAGGAGAACTTGATATTGATCCATTGATTGCACTTCCAGGCCTCCGAGTTCTTGATATCGCGAATAATTCATTTTC</genome_strand>
        <mrna_strand>TTTCTATAAGGGGAAGGTGGACATGTCTAGTAACAAACATGGCCGCCGTTCCCCTAATCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTACTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAATCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTGAAGGCCTCCTTTTAGGTGAAGCTGGCTTATCAGGAGAACTTGATGTTGATCCATTGATTGCACTTCCAGGCCTCCGAGTTCTTGATATCGCGAATAATTCATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395031" ref_strand="+" ref_description="SGN-E395031 [TUS-40-H16]">
      <seq>gtggatatgtctagtaacaaacatggccgccgttcccctaacccttcatctccttcctcgagcatcgtctcctaaagaacaccagcttttccttattcatatagccattttcttcctcatttctctatgtaatccacaattttctttcgccatttccgaggacgatgccttgatcaaattcaaaaaatctttaaggaacaccacatctctagattcatcttgggttaaaggtactagtccatgtgaaaaaaacaagagatgggctcgtgttcaatgcgaacgtagcgtggtagaaggcctccttttaggtgaagctggcattatcaggagaacttgatattgatccattgattgcacttccaggcctccgagttcttgatatcgcgaataattcattttcaggcttattcccggaattcttcttgcttggtgcacttaaatctatatatatagatggataccaattctcaggtgagattcctaaagatttctttgccaaaatggggtctcttaagaaaatatggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="66546" stop="67670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66846" g_stop="67371" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E395031" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66846" e_stop="67371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGACATGTCTAGTAACAAACATGGCCGCCGTTCCCCTAACCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTTCTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAGTCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTGAAGGCCTCCTTTTAGGTGAAGCTGGC-TTATCAGGAGAACTTGATATTGATCCATTGATTGCACTTCCAGGCCTCCGAGTTCTTGATATCGCGAATAATTCATTTTCAGGCTTAATCCCTGAATTCTTCTTGCTTGGTGCACTTAAATCTATATATATAGATGGAAACCAATTCTCAGGTGAGATTCCTAAAGATTTCTTTGCCAAAATGGGGTCTCTTAAGAAGATATGGCTT</genome_strand>
        <mrna_strand>GTGGATATGTCTAGTAACAAACATGGCCGCCGTTCCCCTAACCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAGAACACCAGCTTTTCCTTATTCATATAGCCATTTTCTTCCTCATTTCTCTATGTAATCCACAATTTTCTTTCGCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAGGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAGTCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAGCGTGGTAGAAGGCCTCCTTTTAGGTGAAGCTGGCATTATCAGGAGAACTTGATATTGATCCATTGATTGCACTTCCAGGCCTCCGAGTTCTTGATATCGCGAATAATTCATTTTCAGGCTTATTCCCGGAATTCTTCTTGCTTGGTGCACTTAAATCTATATATATAGATGGATACCAATTCTCAGGTGAGATTCCTAAAGATTTCTTTGCCAAAATGGGGTCTCTTAAGAAAATATGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330640" ref_strand="+" ref_description="SGN-E330640 [cTOD-8-J10]">
      <seq>tggacatgtctagtaacaaacatggccgccgttcccctaacccttcatctccttcctcgagcatcgtctcctaaaaaacaccatcttttccttattcatatatccattttcttcctcatttctctatgtaatccacaattttctttctccatttccgaggacgatgccttgatcaaattcaaaaaatctttaaagaacaccacatctctagattcatcttgggttaaaggtactagtccatgtgaaaaaaacaagagatgggctcgtgttcaatgcgaacgtaacgtggttgaaggcctccttttaggtgaagctggcttatcaggagaacttgatattgatccattgattgcacttccaggcctccgagttcttgatatcgcgaataattcattttcaggcttaatccctgaattcttcttgcttggtgcacttaaatctatatatatagatggaaaccaattctcaggtgagattcctaaagatttctttgccaaaatggggtctcttaagaagatatggcttgcacgaaacaaattttccggagcaattcctgaatcattagccagcttgaagtacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="66547" stop="67730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66847" g_stop="67430" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E330640" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66847" e_stop="67430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACATGTCTAGTAACAAACATGGCCGCCGTTCCCCTAACCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTTCTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAGTCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTGAAGGCCTCCTTTTAGGTGAAGCTGGCTTATCAGGAGAACTTGATATTGATCCATTGATTGCACTTCCAGGCCTCCGAGTTCTTGATATCGCGAATAATTCATTTTCAGGCTTAATCCCTGAATTCTTCTTGCTTGGTGCACTTAAATCTATATATATAGATGGAAACCAATTCTCAGGTGAGATTCCTAAAGATTTCTTTGCCAAAATGGGGTCTCTTAAGAAGATATGGCTTGCACGAAACAAATTTTCCGGAGCAATTCCTGAATCATTAGCCAGCTTGAAGTACTTGAT</genome_strand>
        <mrna_strand>TGGACATGTCTAGTAACAAACATGGCCGCCGTTCCCCTAACCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTTCTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAGTCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTGAAGGCCTCCTTTTAGGTGAAGCTGGCTTATCAGGAGAACTTGATATTGATCCATTGATTGCACTTCCAGGCCTCCGAGTTCTTGATATCGCGAATAATTCATTTTCAGGCTTAATCCCTGAATTCTTCTTGCTTGGTGCACTTAAATCTATATATATAGATGGAAACCAATTCTCAGGTGAGATTCCTAAAGATTTCTTTGCCAAAATGGGGTCTCTTAAGAAGATATGGCTTGCACGAAACAAATTTTCCGGAGCAATTCCTGAATCATTAGCCAGCTTGAAGTACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361645" ref_strand="+" ref_description="SGN-E361645 [cLPP-12-C24]">
      <seq>tagtaacaaacatggccgccgttcccctaatccttcatctccttcctcgagcatcgtctcctaaaaaacaccatcttttccttattcatatatccattttcttcctcattactctatgtaatccacaattttctttctccatttccgaggacgatgccttgatcaaattcaaaaaatctttaaagaacaccacatctctagattcatcttgggttaaaggtactaatccatgtgaaaaaaacaagagatgggctcgtgttcaatgcgaacgtaacgtggttgaaggcctccttttaggtgaagctggcttatcaggagaacttgatgttgatccattgattgcacttccaggcctccgagttcttgatatcgcgaataattcattttcaggcttaatccctgaattcttcttgcttggtgcacttaaatctatatatatagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="66557" stop="67599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66857" g_stop="67299" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E361645" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66857" e_stop="67299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAACAAACATGGCCGCCGTTCCCCTAACCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTTCTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAGTCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTGAAGGCCTCCTTTTAGGTGAAGCTGGCTTATCAGGAGAACTTGATATTGATCCATTGATTGCACTTCCAGGCCTCCGAGTTCTTGATATCGCGAATAATTCATTTTCAGGCTTAATCCCTGAATTCTTCTTGCTTGGTGCACTTAAATCTATATATATAGAT</genome_strand>
        <mrna_strand>TAGTAACAAACATGGCCGCCGTTCCCCTAATCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTACTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAATCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTGAAGGCCTCCTTTTAGGTGAAGCTGGCTTATCAGGAGAACTTGATGTTGATCCATTGATTGCACTTCCAGGCCTCCGAGTTCTTGATATCGCGAATAATTCATTTTCAGGCTTAATCCCTGAATTCTTCTTGCTTGGTGCACTTAAATCTATATATATAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747185" ref_strand="+" ref_description="SGN-E747185 [GI|13924729]">
      <seq>cttgggaaagagaaccttgatgaggggttgcacattgcaagctcgattaggaagagcatgagtattcatagcaaaggaggtgattctattcgtggaggatcaacacgaaggggaggaggatcacaaagtggtaaggctatgggagatctcgtgttagtgaacaacgaaaatggtacattcggattgcctgatttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="67447" stop="68244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67747" g_stop="67944" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E747185" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67747" e_stop="67944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGGAAAGAGAACCTTGATGAGGGGTTGCACATTGCAAGCTCGATTAGGAAGAGCATGAGTATTCATAGCAAAGGAGGTGATTCTATTCGTGGAGGATCAACACGAAGGGGAGGAGGATCACAAAGTGGTAAGGCTATGGGAGATCTCGTGTTAGTGAACAACGAAAATGGTACATTCGGATTGCCTGATTTGATG</genome_strand>
        <mrna_strand>CTTGGGAAAGAGAACCTTGATGAGGGGTTGCACATTGCAAGCTCGATTAGGAAGAGCATGAGTATTCATAGCAAAGGAGGTGATTCTATTCGTGGAGGATCAACACGAAGGGGAGGAGGATCACAAAGTGGTAAGGCTATGGGAGATCTCGTGTTAGTGAACAACGAAAATGGTACATTCGGATTGCCTGATTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395030" ref_strand="+" ref_description="SGN-E395030 [TUS-40-H16](-)">
      <seq>gaaaatacgagccacttttatcagattacgccttctatccactgatcaacaacacacaaatagttcaatcccttttcgcgtataaagcaccagaagccacacaacatcaacatctcactccaaaatgtgacatatattgtcttggaatcataatactagaaatccttacagggaaatttccttctcagtatctcaacaatcaaaaaggtggaacggatgttgttcaatgggtgcaatcagctatagctgaccaaagagaatccgaattgattgatccagagatagcgtctgcaacagattccgttgaacaaatggtgaaactccttcatgtaggagctgcttgtactataagcgatccggataagaggattgatatgaaggaagcattaaggaggatagaagagataagtttaatatgataatgaacataacacgaaaggttagtagattttcgtgtgaaagctttagttacgttacatgccagaagagagcgatccttatagcctcatttgattccgttttatctcagttaaactctacaacgtctctcgactcacttcatttgccaaacaaaacagagtttactgtatctaaaacaccaaaataagacttcaaaatttccacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="68629" stop="69863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68929" g_stop="69563" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E395030" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68929" e_stop="69563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATACGAGCCACTTCTATCAGATTACGCCTTCTATCCACTGATCAACAACACACAAATAGTTCAATCCCTTTTCGCGTATAAAGCACCAGAAGCCACACAACATCAACATCTCACTCCAAAATGTGACATATATTGTCTTGGAATCATAATACTAGAAATCCTTACAGGGAAATTTCCTTCTCAGTATCTCAACAATCAAAAAGGTGGAACGGATGTTGTTCAATGGGTGCAATCAGCTATAGCTGACCAAAGAGAATCCGAATTGATTGATCCAGAGATAGCGTCTGCAACAGATTCCGTTGAACAAATGGTGAAACTCCTTCATGTAGGAGCTGCTTGTACTATAAGCGATCCGGATAAGAGGATTGATATGAAGGAAGCATTAAGGAGGATAGAAGAGATAAGTTTAATATGATAATGAACATAACACGAAAGGTTAGTAGATTTTCGTGTGAAAGCTTTAGTTACGTTACATGCCAGAAGAGAGCGATCCTTATAGCCTCATTTGATTCCGTTTTATCTCAGTTAAACTCTACAACGTCTCTCGACTCACTTCATTTGCCAAACAAAACAGAGTTTACTGTATCTAAAACACCAAAATAAGACTTCTAAATTTCCACAAAAAAAAAAA</genome_strand>
        <mrna_strand>GAAAATACGAGCCACTTTTATCAGATTACGCCTTCTATCCACTGATCAACAACACACAAATAGTTCAATCCCTTTTCGCGTATAAAGCACCAGAAGCCACACAACATCAACATCTCACTCCAAAATGTGACATATATTGTCTTGGAATCATAATACTAGAAATCCTTACAGGGAAATTTCCTTCTCAGTATCTCAACAATCAAAAAGGTGGAACGGATGTTGTTCAATGGGTGCAATCAGCTATAGCTGACCAAAGAGAATCCGAATTGATTGATCCAGAGATAGCGTCTGCAACAGATTCCGTTGAACAAATGGTGAAACTCCTTCATGTAGGAGCTGCTTGTACTATAAGCGATCCGGATAAGAGGATTGATATGAAGGAAGCATTAAGGAGGATAGAAGAGATAAGTTTAATATGATAATGAACATAACACGAAAGGTTAGTAGATTTTCGTGTGAAAGCTTTAGTTACGTTACATGCCAGAAGAGAGCGATCCTTATAGCCTCATTTGATTCCGTTTTATCTCAGTTAAACTCTACAACGTCTCTCGACTCACTTCATTTGCCAAACAAAACAGAGTTTACTGTATCTAAAACACCAAAATAAGACTTCAAAATTTCCACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224066" ref_strand="+" ref_description="SGN-E224066 [cLEL-19-F7](-)">
      <seq>gagatagcgtctgcaacaaattccgttgaacaaatggtgaaactccttcatgtaggagctgcttgtactataagcgatccggataagaggattgatatgaaggaagcattaaggaggatagaagagataagtttaatatgataatgaacataacacgaaaggttagtagattttcgtgtgaaagctttagttacgttacatgccagaagagagcgatccttatagcctcatttgattccgttttatctcagttaaactctacaacgtctctcgactcacttcatttgcccaaccaaaacagagtttactgtatctaaaacaccaaaataagacttctaaatttccccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="68907" stop="69869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69207" g_stop="69571" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E224066" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69207" e_stop="69571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATAGCGTCTGCAACAGATTCCGTTGAACAAATGGTGAAACTCCTTCATGTAGGAGCTGCTTGTACTATAAGCGATCCGGATAAGAGGATTGATATGAAGGAAGCATTAAGGAGGATAGAAGAGATAAGTTTAATATGATAATGAACATAACACGAAAGGTTAGTAGATTTTCGTGTGAAAGCTTTAGTTACGTTACATGCCAGAAGAGAGCGATCCTTATAGCCTCATTTGATTCCGTTTTATCTCAGTTAAACTCTACAACGTCTCTCGACTCACTTCATTTG-CCAAACAAAACAGAGTTTACTGTATCTAAAACACCAAAATAAGACTTCTAAATTTCCACAAAAAAAAAAAAAAAAACT</genome_strand>
        <mrna_strand>GAGATAGCGTCTGCAACAAATTCCGTTGAACAAATGGTGAAACTCCTTCATGTAGGAGCTGCTTGTACTATAAGCGATCCGGATAAGAGGATTGATATGAAGGAAGCATTAAGGAGGATAGAAGAGATAAGTTTAATATGATAATGAACATAACACGAAAGGTTAGTAGATTTTCGTGTGAAAGCTTTAGTTACGTTACATGCCAGAAGAGAGCGATCCTTATAGCCTCATTTGATTCCGTTTTATCTCAGTTAAACTCTACAACGTCTCTCGACTCACTTCATTTGCCCAACCAAAACAGAGTTTACTGTATCTAAAACACCAAAATAAGACTTCTAAATTTCCCCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223707" ref_strand="+" ref_description="SGN-E223707 [cLEL-19-F7](-)">
      <seq>ttccgttgaacaaatggtgaaactccttcatgtaggagctgcttgtactataagcgatccggataagaggattgatatgaaggaagcattaaggaggatagaagagataagtttaatatgataatgaacataacacgaaaggttagtagattttcgtgtgaaagctttagttacgttacatgccagaagagagcgatccttatagcctcatttgattccgttttatctcagttaaactctacaacgtctctcgactcacttcatttgccaaacaaaacagagtttactgtatctaaaacaccaaaataagacttctaaatttccacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="68927" stop="69869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69227" g_stop="69571" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E223707" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69227" e_stop="69571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGTTGAACAAATGGTGAAACTCCTTCATGTAGGAGCTGCTTGTACTATAAGCGATCCGGATAAGAGGATTGATATGAAGGAAGCATTAAGGAGGATAGAAGAGATAAGTTTAATATGATAATGAACATAACACGAAAGGTTAGTAGATTTTCGTGTGAAAGCTTTAGTTACGTTACATGCCAGAAGAGAGCGATCCTTATAGCCTCATTTGATTCCGTTTTATCTCAGTTAAACTCTACAACGTCTCTCGACTCACTTCATTTGCCAAACAAAACAGAGTTTACTGTATCTAAAACACCAAAATAAGACTTCTAAATTTCCACAAAAAAAAAAAAAAAAACT</genome_strand>
        <mrna_strand>TTCCGTTGAACAAATGGTGAAACTCCTTCATGTAGGAGCTGCTTGTACTATAAGCGATCCGGATAAGAGGATTGATATGAAGGAAGCATTAAGGAGGATAGAAGAGATAAGTTTAATATGATAATGAACATAACACGAAAGGTTAGTAGATTTTCGTGTGAAAGCTTTAGTTACGTTACATGCCAGAAGAGAGCGATCCTTATAGCCTCATTTGATTCCGTTTTATCTCAGTTAAACTCTACAACGTCTCTCGACTCACTTCATTTGCCAAACAAAACAGAGTTTACTGTATCTAAAACACCAAAATAAGACTTCTAAATTTCCACAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721865" ref_strand="+" ref_description="SGN-E721865 [FC15CB05]">
      <seq>gaggagccaaaaacttaaaaaaaataaaacaaaaatggcatcaaattctacagagcctacagcttcaaaaattgttgctaagctaaacttgaaggtacatccagaagggggattttactcagaaacatttagagataactcagttattctctccagatctcatcttccatctacatataaggttgatcgacctgtcagtacatgcatctacttcttgctaccttctggaagtgcgtctcatcttcaccggataccttgtgcagaaacatggcatttttatatgggagagccaatcactgtgatggagctaaacgaaactgatggcaaggtgaagttaacttgcgttggacccgatcccctcgtagatgatcaattcgtgcagtatacagtacctccaaatgtatggtttggcgcatttcccacgaaggattacaacatatcttccgatatgcaagtaacgaaagcacctacaagagatggtgagaaacatttctctctagttggatgcacttgtgctccagcattccagtttgaagattttgaattagcaaaacgttctgatcttgtctcgcgttttcctgcccacgaatcccttgtctctttgctagccttccctgatctgtgagagatatgtattcaatggcggatctagagcataatctacgggttttacataacctagtagctttttcgcggaccttgtaaaatatctatatatatttgattcttgtttcctgtttcatcttattacttgtgtgttatgtgttcagagtggcaataaaaggcaatgagtagagttattttgtgtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="70199" stop="73832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70499" g_stop="70674" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70675" i_stop="72192" i_length="1518">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72193" g_stop="72314" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="298" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72315" i_stop="73020" i_length="706">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73021" g_stop="73537" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="815" r_length="517" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E721865" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70499" e_stop="70674"/>
          <exon e_start="72193" e_stop="72314"/>
          <exon e_start="73021" e_stop="73537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGCCAAAAACTTAAAAAAAATAAAACAAAAATGGCATCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACATGTAAGTTTTTTTTTTTTTTTTTGTATAAATTTAATTTACTTTTTGGATCTTGAATTTCTTAGATCCCTCATGAGATTTTTGGATCTTAGATCTGTTTTTCATCCATATGTTTTTAGGATGTTTACTTGGATATTGCTATATGAAGTGTGATGGATATGTGATTTGGACTTTTAGGATCTCAAATTGCCCCCAAAAACCATGATTTGGAAATGGTAGTAACAAAAGAAATTTAATATGTAAAAAATTAGACGTAATACGTAAATATACCCTTTATTTTAACTTCATTTTACATTTACGCCCTTTAATTTTGATTGTGCACAAATCGACACTTAAACTCTTATAAAGTTAAACAAATAGACACACGAGTCCTACATGTCACAATACACGTAGGACACAAATTTTCATGGGCATAATACATAAATATGCCCTTTAACTTGGCTTCGAATCACATATATGCCCTTCAATTTTTGGTTTACACAAGTAGACACTTAAACTTGTATAAAGTAGAACAAGTAGACACACACGTCCTACATGTCATTTTTTGTCCTATGTGGTGTCCTACGTGTATTTTGCAATGTAAGACTCATGTGTTTATTTATTAGTTGGATAGTTAAAGTGTCTGTTTGTGCATTATGAAAGTTAGAGGACAAAGTTAAAATTTGAAACCAAGTTTAGGGTCCATTATATGTATTATGCCTATATAGGATGTCATGCAGGACGTTTGTGTCTATTTGTTTAATTTTATACAAGTTTAAGTGTCTGCTTGTGCACACCCAAAGTTGGAGGGCATAAATCAGAGTGCATGTTAATTTTATGTATTATGCCTAAAAAAAATTAACATGCACTCTGATTTTGCTATTTTGGGTGTGTACAAGCAGTTAATTGAACTTTTATAAAATTGAACAGTAGACACATGAGCATTCTGTGACATAATACGCATAGGACACTACATAGAATTGTTCGTTTTTATACAAGTGTATACCTGTGCGCATTCAATGTTGAAGGGCATAAATGTGAAATGATGCTAAGTTAAAAGGGCATATTTATGTATTATGCCTATTTTAAATTTTGTAGAAAGATATTCGTGTTCGGTTGTTTGAATTATATACAAGGAATAACTAGTTACTACTTTTATTGATTTGTAGATCTTTATGACATTATGCGTACTTAGAAGTTCGTCATCACAAATATCTATTTATAAAAGAAACATGAAGATATGTAATTTATTTATGGGCTTAAGATATTTCGATATTCTGTTTCTTAATTTTACTATCTCATATGTATCACCAGCAACATTTGCAGTGGTGTAACCAGTATTTCATTAAGCAAATGAAAAGCATAAGGAGGTTCAATATCTGCTATATATATCTGCATAAACCGTATAACTTTCCGCGATCTGAACCCCTTGACCTCACCGACCTCACCTGGTTCCGTCCTTGAGCATTTGCTTCATAAGATAGAGTACTATCAAATTAGTTAGTTGTTTTTTCCCTGATGTTTCGGGTTTCACCATTGCAGATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACTGTGAGATCATCTTTCCCGCAGTCTACTTTATGCACCAGATTAGGATTATCTCTGTGCTGTTCTGTATATTTATGTCATGCGTTGTGTGTTAAGGCTTAATACGTAAACAAACACTTAAACTTGGCCTCAGCTGGGAAGTAAACACTCCAACTTTGAGAGTGCACATCTACACGTGCACCTCAGACTCGTCTCCATTGTGTCATTTGAGCCACTCCAACTTACGAAATGATCATCTAGACACCCTCCAATATTTATATCTCACGTCAACTTGGATGTTCCATAAGACACGGTTATGACGAGTTTGAGTGATAAGTTATAAGTTGAAACCAAATTGAGGAATCTCTCTAAGTTGGAGTACTAAATTGTTAGCTGAGCCCGAGGCCAAGTTTGGATATATGTTTATGTATTATGCCTTGTGTTTTGGTGTGAACTGAAAGGGATTTGACTAACACTCAAAAGTGTTAATAAAACTTGTAAGGACTATAAGGGTCGTTAAGATTCGTTGCCTAAATAGGAAAGAGACCGCCTTTCTGAAACAGACTAAAAAGGAAAGTAATACAGGCAAATTGATACATTGGATCTTCATAATCATCTTGTTCTTTACGATAATTGAACATTTGTTGCTCCCCGGTAAGAGTGATGAACTAGTCATTCACCAATGTTTTCCTAGAAATGACGATAATGACAACACTTCTTGTGCTTTCAGGTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAGATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGCCCACGAATCCCTTGTCTCTTTGCTAGCCTTCCCTGATCTGTGAGAGATATGTATTCAATGGCGGATCTAGAGCATAATCTACGGGTTTTACATAACCTAGTAGCTTTTTCGCGGACCTTGTAAAATATCTATATATATTTGATTCTTGTTTCCTGTTTCATCTTATTACTTGTGTGTTATGTGTTCAGAGTGGCAATAAAAGGCAATGAGTAGAGTTATTTTGTGTAAGTTCA</genome_strand>
        <mrna_strand>GAGGAGCCAAAAACTTAAAAAAAATAAAACAAAAATGGCATCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAGATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGCCCACGAATCCCTTGTCTCTTTGCTAGCCTTCCCTGATCTGTGAGAGATATGTATTCAATGGCGGATCTAGAGCATAATCTACGGGTTTTACATAACCTAGTAGCTTTTTCGCGGACCTTGTAAAATATCTATATATATTTGATTCTTGTTTCCTGTTTCATCTTATTACTTGTGTGTTATGTGTTCAGAGTGGCAATAAAAGGCAATGAGTAGAGTTATTTTGTGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725193" ref_strand="+" ref_description="SGN-E725193 [FC26BE03]">
      <seq>ggccaaaacttaaccctttaaaacaaaaatggcatcaaattctacagagcctacagcttcaaaaattgttgctaagctaaacttgaaggtacatccagaagggggattttactcagaaacatttagagataactcagttattctctccagatctcatcttccatctacatataaggttgatcgacctgtcagtacatgcatctacttcttgctaccttctggaagtgcgtctcatcttcaccggataccttgtgcagaaacatggcatttttatatgggagagccaatcactgtgatggagctaaacgaaactgatggcaaggtgaagttaacttgcgttggacccgatcccctcgtagatgatcaattcgtgcagtatacagtacctccaaatgtatggtttggcgcatttcccacgaaggattacaacatatcttccgatatgcaagtaacgaaagcacctacaagagatggtgagaaacatttctctctagttggatgcacttgtgctccagcattccagtttgaagattttgaattagcaaaacgttctgatcttgtctcgcgttttcctgcccacgaatcccttgtctctttgctagccttccctgatctgtgagagatatgtattcaatggcggatctagagcataatctacgggttttacataacctagtagctttttcgcggaccttgtaaaatatctatatatatttgattcttgtttcctgtttcatcttattacttgtgtgttatgtgttcagagtggcaataaaaggcaatgagtagagttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="70223" stop="73824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70504" g_stop="70674" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70675" i_stop="72192" i_length="1518">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72193" g_stop="72314" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="292" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72315" i_stop="73020" i_length="706">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73021" g_stop="73521" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="793" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E725193" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70504" e_stop="70674"/>
          <exon e_start="72193" e_stop="72314"/>
          <exon e_start="73021" e_stop="73521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAAAACTTAAAAAAAATAAAACAAAAATGGCATCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACATGTAAGTTTTTTTTTTTTTTTTTGTATAAATTTAATTTACTTTTTGGATCTTGAATTTCTTAGATCCCTCATGAGATTTTTGGATCTTAGATCTGTTTTTCATCCATATGTTTTTAGGATGTTTACTTGGATATTGCTATATGAAGTGTGATGGATATGTGATTTGGACTTTTAGGATCTCAAATTGCCCCCAAAAACCATGATTTGGAAATGGTAGTAACAAAAGAAATTTAATATGTAAAAAATTAGACGTAATACGTAAATATACCCTTTATTTTAACTTCATTTTACATTTACGCCCTTTAATTTTGATTGTGCACAAATCGACACTTAAACTCTTATAAAGTTAAACAAATAGACACACGAGTCCTACATGTCACAATACACGTAGGACACAAATTTTCATGGGCATAATACATAAATATGCCCTTTAACTTGGCTTCGAATCACATATATGCCCTTCAATTTTTGGTTTACACAAGTAGACACTTAAACTTGTATAAAGTAGAACAAGTAGACACACACGTCCTACATGTCATTTTTTGTCCTATGTGGTGTCCTACGTGTATTTTGCAATGTAAGACTCATGTGTTTATTTATTAGTTGGATAGTTAAAGTGTCTGTTTGTGCATTATGAAAGTTAGAGGACAAAGTTAAAATTTGAAACCAAGTTTAGGGTCCATTATATGTATTATGCCTATATAGGATGTCATGCAGGACGTTTGTGTCTATTTGTTTAATTTTATACAAGTTTAAGTGTCTGCTTGTGCACACCCAAAGTTGGAGGGCATAAATCAGAGTGCATGTTAATTTTATGTATTATGCCTAAAAAAAATTAACATGCACTCTGATTTTGCTATTTTGGGTGTGTACAAGCAGTTAATTGAACTTTTATAAAATTGAACAGTAGACACATGAGCATTCTGTGACATAATACGCATAGGACACTACATAGAATTGTTCGTTTTTATACAAGTGTATACCTGTGCGCATTCAATGTTGAAGGGCATAAATGTGAAATGATGCTAAGTTAAAAGGGCATATTTATGTATTATGCCTATTTTAAATTTTGTAGAAAGATATTCGTGTTCGGTTGTTTGAATTATATACAAGGAATAACTAGTTACTACTTTTATTGATTTGTAGATCTTTATGACATTATGCGTACTTAGAAGTTCGTCATCACAAATATCTATTTATAAAAGAAACATGAAGATATGTAATTTATTTATGGGCTTAAGATATTTCGATATTCTGTTTCTTAATTTTACTATCTCATATGTATCACCAGCAACATTTGCAGTGGTGTAACCAGTATTTCATTAAGCAAATGAAAAGCATAAGGAGGTTCAATATCTGCTATATATATCTGCATAAACCGTATAACTTTCCGCGATCTGAACCCCTTGACCTCACCGACCTCACCTGGTTCCGTCCTTGAGCATTTGCTTCATAAGATAGAGTACTATCAAATTAGTTAGTTGTTTTTTCCCTGATGTTTCGGGTTTCACCATTGCAGATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACTGTGAGATCATCTTTCCCGCAGTCTACTTTATGCACCAGATTAGGATTATCTCTGTGCTGTTCTGTATATTTATGTCATGCGTTGTGTGTTAAGGCTTAATACGTAAACAAACACTTAAACTTGGCCTCAGCTGGGAAGTAAACACTCCAACTTTGAGAGTGCACATCTACACGTGCACCTCAGACTCGTCTCCATTGTGTCATTTGAGCCACTCCAACTTACGAAATGATCATCTAGACACCCTCCAATATTTATATCTCACGTCAACTTGGATGTTCCATAAGACACGGTTATGACGAGTTTGAGTGATAAGTTATAAGTTGAAACCAAATTGAGGAATCTCTCTAAGTTGGAGTACTAAATTGTTAGCTGAGCCCGAGGCCAAGTTTGGATATATGTTTATGTATTATGCCTTGTGTTTTGGTGTGAACTGAAAGGGATTTGACTAACACTCAAAAGTGTTAATAAAACTTGTAAGGACTATAAGGGTCGTTAAGATTCGTTGCCTAAATAGGAAAGAGACCGCCTTTCTGAAACAGACTAAAAAGGAAAGTAATACAGGCAAATTGATACATTGGATCTTCATAATCATCTTGTTCTTTACGATAATTGAACATTTGTTGCTCCCCGGTAAGAGTGATGAACTAGTCATTCACCAATGTTTTCCTAGAAATGACGATAATGACAACACTTCTTGTGCTTTCAGGTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAGATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGCCCACGAATCCCTTGTCTCTTTGCTAGCCTTCCCTGATCTGTGAGAGATATGTATTCAATGGCGGATCTAGAGCATAATCTACGGGTTTTACATAACCTAGTAGCTTTTTCGCGGACCTTGTAAAATATCTATATATATTTGATTCTTGTTTCCTGTTTCATCTTATTACTTGTGTGTTATGTGTTCAGAGTGGCAATAAAAGGCAATGAGTAGAGTT</genome_strand>
        <mrna_strand>GGCCAAAACTT-AACCCTTTAAAACAAAAATGGCATCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAGATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGCCCACGAATCCCTTGTCTCTTTGCTAGCCTTCCCTGATCTGTGAGAGATATGTATTCAATGGCGGATCTAGAGCATAATCTACGGGTTTTACATAACCTAGTAGCTTTTTCGCGGACCTTGTAAAATATCTATATATATTTGATTCTTGTTTCCTGTTTCATCTTATTACTTGTGTGTTATGTGTTCAGAGTGGCAATAAAAGGCAATGAGTAGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700141" ref_strand="+" ref_description="SGN-E700141 [FA12BA10]">
      <seq>caccaacttaaaaaaaataaaacaaaaatggcatcaaattctacagagcctacagcttcaaaaattgttgctaagctaaacttgaaggtacatccagaagggggattttactcagaaacatttagagataactcagttattctctccagatctcatcttccatctacatataaggttgatcgacctgtcagtacatgcatctacttcttgctaccttctggaagtgcgtctcatcttcaccggataccttgtgcagaaacatggcatttttatatgggagagccaatcactgtgatggagctaaacgaaactgatggcaaggtgaagttaacttgcgttggacccgatcccctcgtagatgatcaattcgtgcagtatacagtacctccaaatgtatggtttggcgcatttcccacgaaggattacaacatatcttccgatatgcaagtaacgaaagcacctacaagagatggtgagaaacatttctctctagttggatgcacttgtgctccagcattccagtttgaagattttgaattagcaaaacgttctgatcttgtctcgcgttttcctgcccacgaatcccttgtctctttgctagccttccctgatctgtgagagatatgtattcaatggcggatctagagcataatctacgggttttacataacctagtagctttttcgcggaccttgtaaaatatctatatatatttgattcttgtttcctgtttcatcttattacttgtgtgttatgtgttcagagtggcaataanaggcaatgagtagagttattttgtgtaagttcagaatgctttgttttgctttcacttccgtttattctttttcggaatattggttttccctgaatcgaggtatatcagaaacagtctctctctacctatgaggtaaggtaaagtttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="70206" stop="73951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70506" g_stop="70674" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70675" i_stop="72192" i_length="1518">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72193" g_stop="72314" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="291" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72315" i_stop="73020" i_length="706">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73021" g_stop="73641" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="912" r_length="621" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="922" polyA_stop="939"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E700141" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70506" e_stop="70674"/>
          <exon e_start="72193" e_stop="72314"/>
          <exon e_start="73021" e_stop="73641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTTAAAAAAAATAAAACAAAAATGGCATCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACATGTAAGTTTTTTTTTTTTTTTTTGTATAAATTTAATTTACTTTTTGGATCTTGAATTTCTTAGATCCCTCATGAGATTTTTGGATCTTAGATCTGTTTTTCATCCATATGTTTTTAGGATGTTTACTTGGATATTGCTATATGAAGTGTGATGGATATGTGATTTGGACTTTTAGGATCTCAAATTGCCCCCAAAAACCATGATTTGGAAATGGTAGTAACAAAAGAAATTTAATATGTAAAAAATTAGACGTAATACGTAAATATACCCTTTATTTTAACTTCATTTTACATTTACGCCCTTTAATTTTGATTGTGCACAAATCGACACTTAAACTCTTATAAAGTTAAACAAATAGACACACGAGTCCTACATGTCACAATACACGTAGGACACAAATTTTCATGGGCATAATACATAAATATGCCCTTTAACTTGGCTTCGAATCACATATATGCCCTTCAATTTTTGGTTTACACAAGTAGACACTTAAACTTGTATAAAGTAGAACAAGTAGACACACACGTCCTACATGTCATTTTTTGTCCTATGTGGTGTCCTACGTGTATTTTGCAATGTAAGACTCATGTGTTTATTTATTAGTTGGATAGTTAAAGTGTCTGTTTGTGCATTATGAAAGTTAGAGGACAAAGTTAAAATTTGAAACCAAGTTTAGGGTCCATTATATGTATTATGCCTATATAGGATGTCATGCAGGACGTTTGTGTCTATTTGTTTAATTTTATACAAGTTTAAGTGTCTGCTTGTGCACACCCAAAGTTGGAGGGCATAAATCAGAGTGCATGTTAATTTTATGTATTATGCCTAAAAAAAATTAACATGCACTCTGATTTTGCTATTTTGGGTGTGTACAAGCAGTTAATTGAACTTTTATAAAATTGAACAGTAGACACATGAGCATTCTGTGACATAATACGCATAGGACACTACATAGAATTGTTCGTTTTTATACAAGTGTATACCTGTGCGCATTCAATGTTGAAGGGCATAAATGTGAAATGATGCTAAGTTAAAAGGGCATATTTATGTATTATGCCTATTTTAAATTTTGTAGAAAGATATTCGTGTTCGGTTGTTTGAATTATATACAAGGAATAACTAGTTACTACTTTTATTGATTTGTAGATCTTTATGACATTATGCGTACTTAGAAGTTCGTCATCACAAATATCTATTTATAAAAGAAACATGAAGATATGTAATTTATTTATGGGCTTAAGATATTTCGATATTCTGTTTCTTAATTTTACTATCTCATATGTATCACCAGCAACATTTGCAGTGGTGTAACCAGTATTTCATTAAGCAAATGAAAAGCATAAGGAGGTTCAATATCTGCTATATATATCTGCATAAACCGTATAACTTTCCGCGATCTGAACCCCTTGACCTCACCGACCTCACCTGGTTCCGTCCTTGAGCATTTGCTTCATAAGATAGAGTACTATCAAATTAGTTAGTTGTTTTTTCCCTGATGTTTCGGGTTTCACCATTGCAGATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACTGTGAGATCATCTTTCCCGCAGTCTACTTTATGCACCAGATTAGGATTATCTCTGTGCTGTTCTGTATATTTATGTCATGCGTTGTGTGTTAAGGCTTAATACGTAAACAAACACTTAAACTTGGCCTCAGCTGGGAAGTAAACACTCCAACTTTGAGAGTGCACATCTACACGTGCACCTCAGACTCGTCTCCATTGTGTCATTTGAGCCACTCCAACTTACGAAATGATCATCTAGACACCCTCCAATATTTATATCTCACGTCAACTTGGATGTTCCATAAGACACGGTTATGACGAGTTTGAGTGATAAGTTATAAGTTGAAACCAAATTGAGGAATCTCTCTAAGTTGGAGTACTAAATTGTTAGCTGAGCCCGAGGCCAAGTTTGGATATATGTTTATGTATTATGCCTTGTGTTTTGGTGTGAACTGAAAGGGATTTGACTAACACTCAAAAGTGTTAATAAAACTTGTAAGGACTATAAGGGTCGTTAAGATTCGTTGCCTAAATAGGAAAGAGACCGCCTTTCTGAAACAGACTAAAAAGGAAAGTAATACAGGCAAATTGATACATTGGATCTTCATAATCATCTTGTTCTTTACGATAATTGAACATTTGTTGCTCCCCGGTAAGAGTGATGAACTAGTCATTCACCAATGTTTTCCTAGAAATGACGATAATGACAACACTTCTTGTGCTTTCAGGTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAGATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGCCCACGAATCCCTTGTCTCTTTGCTAGCCTTCCCTGATCTGTGAGAGATATGTATTCAATGGCGGATCTAGAGCATAATCTACGGGTTTTACATAACCTAGTAGCTTTTTCGCGGACCTTGTAAAATATCTATATATATTTGATTCTTGTTTCCTGTTTCATCTTATTACTTGTGTGTTATGTGTTCAGAGTGGCAATAAAAGGCAATGAGTAGAGTTATTTTGTGTAAGTTCAGAATGCTTTGTTTTGCTTTCACTTCCGTTTATTCTTTTTCGGAATATTGGTTTTCCCTGAGTCGAGGTATATCAGAAACAGTCTCTCTCTACCTATGAGGTAAG</genome_strand>
        <mrna_strand>CACCAACTTAAAAAAAATAAAACAAAAATGGCATCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAGATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGCCCACGAATCCCTTGTCTCTTTGCTAGCCTTCCCTGATCTGTGAGAGATATGTATTCAATGGCGGATCTAGAGCATAATCTACGGGTTTTACATAACCTAGTAGCTTTTTCGCGGACCTTGTAAAATATCTATATATATTTGATTCTTGTTTCCTGTTTCATCTTATTACTTGTGTGTTATGTGTTCAGAGTGGCAATAANAGGCAATGAGTAGAGTTATTTTGTGTAAGTTCAGAATGCTTTGTTTTGCTTTCACTTCCGTTTATTCTTTTTCGGAATATTGGTTTTCCCTGAATCGAGGTATATCAGAAACAGTCTCTCTCTACCTATGAGGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241906" ref_strand="+" ref_description="SGN-E241906 [cLED-27-D22]">
      <seq>aaaaatggcatcaaattctacagagcctacagcttcaaaaattgttgctaagctaaacttgaaggtacatccagaagggggattttactcagaaacatttagagataactcagttattctctccagatctcatcttccatctacatataaggttgatcgacctgtcagtacatgcatctacttcttgctaccttctggaagtgcgtctcatcttcaccggataccttgtgcagaaacatggcatttttatatgggagagccaatcactgtgatggagctaaacgaaactgatggcaaggtgaagttaacttgcgttggacccgatcccctcgtagatgatcaattcgtgcagtatacagtacctccaaatgtatggtttggcgcatttcccacgaaggattacaacatatctttcgatatgcaagtaacgaaagcacctacaagagatggtgagaaacatttctctctagttggatgcacttgtgctccagcattccagtttgaaaattttgaattagcaaaacgttctgatcttgtctcgcgttttcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="70229" stop="73604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70529" g_stop="70674" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70675" i_stop="72192" i_length="1518">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72193" g_stop="72314" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="268" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72315" i_stop="73020" i_length="706">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73021" g_stop="73304" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="552" r_length="284" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E241906" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70529" e_stop="70674"/>
          <exon e_start="72193" e_stop="72314"/>
          <exon e_start="73021" e_stop="73304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCATCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACATGTAAGTTTTTTTTTTTTTTTTTGTATAAATTTAATTTACTTTTTGGATCTTGAATTTCTTAGATCCCTCATGAGATTTTTGGATCTTAGATCTGTTTTTCATCCATATGTTTTTAGGATGTTTACTTGGATATTGCTATATGAAGTGTGATGGATATGTGATTTGGACTTTTAGGATCTCAAATTGCCCCCAAAAACCATGATTTGGAAATGGTAGTAACAAAAGAAATTTAATATGTAAAAAATTAGACGTAATACGTAAATATACCCTTTATTTTAACTTCATTTTACATTTACGCCCTTTAATTTTGATTGTGCACAAATCGACACTTAAACTCTTATAAAGTTAAACAAATAGACACACGAGTCCTACATGTCACAATACACGTAGGACACAAATTTTCATGGGCATAATACATAAATATGCCCTTTAACTTGGCTTCGAATCACATATATGCCCTTCAATTTTTGGTTTACACAAGTAGACACTTAAACTTGTATAAAGTAGAACAAGTAGACACACACGTCCTACATGTCATTTTTTGTCCTATGTGGTGTCCTACGTGTATTTTGCAATGTAAGACTCATGTGTTTATTTATTAGTTGGATAGTTAAAGTGTCTGTTTGTGCATTATGAAAGTTAGAGGACAAAGTTAAAATTTGAAACCAAGTTTAGGGTCCATTATATGTATTATGCCTATATAGGATGTCATGCAGGACGTTTGTGTCTATTTGTTTAATTTTATACAAGTTTAAGTGTCTGCTTGTGCACACCCAAAGTTGGAGGGCATAAATCAGAGTGCATGTTAATTTTATGTATTATGCCTAAAAAAAATTAACATGCACTCTGATTTTGCTATTTTGGGTGTGTACAAGCAGTTAATTGAACTTTTATAAAATTGAACAGTAGACACATGAGCATTCTGTGACATAATACGCATAGGACACTACATAGAATTGTTCGTTTTTATACAAGTGTATACCTGTGCGCATTCAATGTTGAAGGGCATAAATGTGAAATGATGCTAAGTTAAAAGGGCATATTTATGTATTATGCCTATTTTAAATTTTGTAGAAAGATATTCGTGTTCGGTTGTTTGAATTATATACAAGGAATAACTAGTTACTACTTTTATTGATTTGTAGATCTTTATGACATTATGCGTACTTAGAAGTTCGTCATCACAAATATCTATTTATAAAAGAAACATGAAGATATGTAATTTATTTATGGGCTTAAGATATTTCGATATTCTGTTTCTTAATTTTACTATCTCATATGTATCACCAGCAACATTTGCAGTGGTGTAACCAGTATTTCATTAAGCAAATGAAAAGCATAAGGAGGTTCAATATCTGCTATATATATCTGCATAAACCGTATAACTTTCCGCGATCTGAACCCCTTGACCTCACCGACCTCACCTGGTTCCGTCCTTGAGCATTTGCTTCATAAGATAGAGTACTATCAAATTAGTTAGTTGTTTTTTCCCTGATGTTTCGGGTTTCACCATTGCAGATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACTGTGAGATCATCTTTCCCGCAGTCTACTTTATGCACCAGATTAGGATTATCTCTGTGCTGTTCTGTATATTTATGTCATGCGTTGTGTGTTAAGGCTTAATACGTAAACAAACACTTAAACTTGGCCTCAGCTGGGAAGTAAACACTCCAACTTTGAGAGTGCACATCTACACGTGCACCTCAGACTCGTCTCCATTGTGTCATTTGAGCCACTCCAACTTACGAAATGATCATCTAGACACCCTCCAATATTTATATCTCACGTCAACTTGGATGTTCCATAAGACACGGTTATGACGAGTTTGAGTGATAAGTTATAAGTTGAAACCAAATTGAGGAATCTCTCTAAGTTGGAGTACTAAATTGTTAGCTGAGCCCGAGGCCAAGTTTGGATATATGTTTATGTATTATGCCTTGTGTTTTGGTGTGAACTGAAAGGGATTTGACTAACACTCAAAAGTGTTAATAAAACTTGTAAGGACTATAAGGGTCGTTAAGATTCGTTGCCTAAATAGGAAAGAGACCGCCTTTCTGAAACAGACTAAAAAGGAAAGTAATACAGGCAAATTGATACATTGGATCTTCATAATCATCTTGTTCTTTACGATAATTGAACATTTGTTGCTCCCCGGTAAGAGTGATGAACTAGTCATTCACCAATGTTTTCCTAGAAATGACGATAATGACAACACTTCTTGTGCTTTCAGGTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAGATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGC</genome_strand>
        <mrna_strand>AAAAATGGCATCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTTCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAAATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282157" ref_strand="+" ref_description="SGN-E282157 [cLES-4-M12]">
      <seq>ggcatcaaattctacagagcctacagcttcaaaaattgttgctaagctaaacttgaaggtacatccagaagggggattttactcagaaacatttagagataactcagttattctctccagatctcatcttccatctacatataaggttgatcgacctgtcagtacatgcatctacttcttgctaccttctggaagtgcgtctcatcttcaccggataccttgtgcagaaacatggcatttttatatgggagagccaatcactgtgatggagctaaacgaaactgatggcaaggtgaagttaacttgcgttggacccgatcccctcgtagatgatcaattcgtgcagtatacagtacctccaaatgtatggtttggcgcatttcccacgaaggattacaacatatcttccgatatgcaagtaacgaaagcacctacaagagatggtgagaaacatttctctctagttggatgcacttgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="70235" stop="73539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70535" g_stop="70674" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70675" i_stop="72192" i_length="1518">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72193" g_stop="72314" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="262" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72315" i_stop="73020" i_length="706">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73021" g_stop="73239" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="481" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E282157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70535" e_stop="70674"/>
          <exon e_start="72193" e_stop="72314"/>
          <exon e_start="73021" e_stop="73239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACATGTAAGTTTTTTTTTTTTTTTTTGTATAAATTTAATTTACTTTTTGGATCTTGAATTTCTTAGATCCCTCATGAGATTTTTGGATCTTAGATCTGTTTTTCATCCATATGTTTTTAGGATGTTTACTTGGATATTGCTATATGAAGTGTGATGGATATGTGATTTGGACTTTTAGGATCTCAAATTGCCCCCAAAAACCATGATTTGGAAATGGTAGTAACAAAAGAAATTTAATATGTAAAAAATTAGACGTAATACGTAAATATACCCTTTATTTTAACTTCATTTTACATTTACGCCCTTTAATTTTGATTGTGCACAAATCGACACTTAAACTCTTATAAAGTTAAACAAATAGACACACGAGTCCTACATGTCACAATACACGTAGGACACAAATTTTCATGGGCATAATACATAAATATGCCCTTTAACTTGGCTTCGAATCACATATATGCCCTTCAATTTTTGGTTTACACAAGTAGACACTTAAACTTGTATAAAGTAGAACAAGTAGACACACACGTCCTACATGTCATTTTTTGTCCTATGTGGTGTCCTACGTGTATTTTGCAATGTAAGACTCATGTGTTTATTTATTAGTTGGATAGTTAAAGTGTCTGTTTGTGCATTATGAAAGTTAGAGGACAAAGTTAAAATTTGAAACCAAGTTTAGGGTCCATTATATGTATTATGCCTATATAGGATGTCATGCAGGACGTTTGTGTCTATTTGTTTAATTTTATACAAGTTTAAGTGTCTGCTTGTGCACACCCAAAGTTGGAGGGCATAAATCAGAGTGCATGTTAATTTTATGTATTATGCCTAAAAAAAATTAACATGCACTCTGATTTTGCTATTTTGGGTGTGTACAAGCAGTTAATTGAACTTTTATAAAATTGAACAGTAGACACATGAGCATTCTGTGACATAATACGCATAGGACACTACATAGAATTGTTCGTTTTTATACAAGTGTATACCTGTGCGCATTCAATGTTGAAGGGCATAAATGTGAAATGATGCTAAGTTAAAAGGGCATATTTATGTATTATGCCTATTTTAAATTTTGTAGAAAGATATTCGTGTTCGGTTGTTTGAATTATATACAAGGAATAACTAGTTACTACTTTTATTGATTTGTAGATCTTTATGACATTATGCGTACTTAGAAGTTCGTCATCACAAATATCTATTTATAAAAGAAACATGAAGATATGTAATTTATTTATGGGCTTAAGATATTTCGATATTCTGTTTCTTAATTTTACTATCTCATATGTATCACCAGCAACATTTGCAGTGGTGTAACCAGTATTTCATTAAGCAAATGAAAAGCATAAGGAGGTTCAATATCTGCTATATATATCTGCATAAACCGTATAACTTTCCGCGATCTGAACCCCTTGACCTCACCGACCTCACCTGGTTCCGTCCTTGAGCATTTGCTTCATAAGATAGAGTACTATCAAATTAGTTAGTTGTTTTTTCCCTGATGTTTCGGGTTTCACCATTGCAGATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACTGTGAGATCATCTTTCCCGCAGTCTACTTTATGCACCAGATTAGGATTATCTCTGTGCTGTTCTGTATATTTATGTCATGCGTTGTGTGTTAAGGCTTAATACGTAAACAAACACTTAAACTTGGCCTCAGCTGGGAAGTAAACACTCCAACTTTGAGAGTGCACATCTACACGTGCACCTCAGACTCGTCTCCATTGTGTCATTTGAGCCACTCCAACTTACGAAATGATCATCTAGACACCCTCCAATATTTATATCTCACGTCAACTTGGATGTTCCATAAGACACGGTTATGACGAGTTTGAGTGATAAGTTATAAGTTGAAACCAAATTGAGGAATCTCTCTAAGTTGGAGTACTAAATTGTTAGCTGAGCCCGAGGCCAAGTTTGGATATATGTTTATGTATTATGCCTTGTGTTTTGGTGTGAACTGAAAGGGATTTGACTAACACTCAAAAGTGTTAATAAAACTTGTAAGGACTATAAGGGTCGTTAAGATTCGTTGCCTAAATAGGAAAGAGACCGCCTTTCTGAAACAGACTAAAAAGGAAAGTAATACAGGCAAATTGATACATTGGATCTTCATAATCATCTTGTTCTTTACGATAATTGAACATTTGTTGCTCCCCGGTAAGAGTGATGAACTAGTCATTCACCAATGTTTTCCTAGAAATGACGATAATGACAACACTTCTTGTGCTTTCAGGTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCT</genome_strand>
        <mrna_strand>GGCATCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370158" ref_strand="+" ref_description="SGN-E370158 [TUS-28-C8]">
      <seq>tcaaattctacagagcctacagcttcaaaaattgttgctaagctaaacttgaaggtacatccagaagggggattttactcagaaacatttagagataactcagttattctctccagatctcatcttccatctacatataaggttgatcgacctgtcagtacatgcatctacttcttgctaccttctggaagtgcgtctcatcttcaccggataccttgtgcagaaacatggcatttttatatgggagagccaatcactgtgatggagctaaacgaaactgatggcaaggtgaagttaacttgcgttggacccgatcccctcgtagatgatcaattcgtgcagtatacagtacctccaaatgtatggtttggcgcatttcccacgaaggattacaacatatcttccgatatgcaagtaacgaaagcacctacaagagatggtgagaaacatttctctctagttggatgcacttgtgctccagcattccagtttgaagattttgaattagcaaaacgttctgatcttgtctcgcgttttcctgcccacgaatcccttgtctctttgctagccttccctgatctgtgagagatatgtattcaatggcggatctagagcataatctacgggttttacataacctagtagctttttcgcggaccttgtaaaatatctatatatatttgattcttgtttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="70239" stop="73757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70539" g_stop="70674" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70675" i_stop="72192" i_length="1518">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72193" g_stop="72314" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="258" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72315" i_stop="73020" i_length="706">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73021" g_stop="73458" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="696" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="713"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E370158" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70539" e_stop="70674"/>
          <exon e_start="72193" e_stop="72314"/>
          <exon e_start="73021" e_stop="73458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACATGTAAGTTTTTTTTTTTTTTTTTGTATAAATTTAATTTACTTTTTGGATCTTGAATTTCTTAGATCCCTCATGAGATTTTTGGATCTTAGATCTGTTTTTCATCCATATGTTTTTAGGATGTTTACTTGGATATTGCTATATGAAGTGTGATGGATATGTGATTTGGACTTTTAGGATCTCAAATTGCCCCCAAAAACCATGATTTGGAAATGGTAGTAACAAAAGAAATTTAATATGTAAAAAATTAGACGTAATACGTAAATATACCCTTTATTTTAACTTCATTTTACATTTACGCCCTTTAATTTTGATTGTGCACAAATCGACACTTAAACTCTTATAAAGTTAAACAAATAGACACACGAGTCCTACATGTCACAATACACGTAGGACACAAATTTTCATGGGCATAATACATAAATATGCCCTTTAACTTGGCTTCGAATCACATATATGCCCTTCAATTTTTGGTTTACACAAGTAGACACTTAAACTTGTATAAAGTAGAACAAGTAGACACACACGTCCTACATGTCATTTTTTGTCCTATGTGGTGTCCTACGTGTATTTTGCAATGTAAGACTCATGTGTTTATTTATTAGTTGGATAGTTAAAGTGTCTGTTTGTGCATTATGAAAGTTAGAGGACAAAGTTAAAATTTGAAACCAAGTTTAGGGTCCATTATATGTATTATGCCTATATAGGATGTCATGCAGGACGTTTGTGTCTATTTGTTTAATTTTATACAAGTTTAAGTGTCTGCTTGTGCACACCCAAAGTTGGAGGGCATAAATCAGAGTGCATGTTAATTTTATGTATTATGCCTAAAAAAAATTAACATGCACTCTGATTTTGCTATTTTGGGTGTGTACAAGCAGTTAATTGAACTTTTATAAAATTGAACAGTAGACACATGAGCATTCTGTGACATAATACGCATAGGACACTACATAGAATTGTTCGTTTTTATACAAGTGTATACCTGTGCGCATTCAATGTTGAAGGGCATAAATGTGAAATGATGCTAAGTTAAAAGGGCATATTTATGTATTATGCCTATTTTAAATTTTGTAGAAAGATATTCGTGTTCGGTTGTTTGAATTATATACAAGGAATAACTAGTTACTACTTTTATTGATTTGTAGATCTTTATGACATTATGCGTACTTAGAAGTTCGTCATCACAAATATCTATTTATAAAAGAAACATGAAGATATGTAATTTATTTATGGGCTTAAGATATTTCGATATTCTGTTTCTTAATTTTACTATCTCATATGTATCACCAGCAACATTTGCAGTGGTGTAACCAGTATTTCATTAAGCAAATGAAAAGCATAAGGAGGTTCAATATCTGCTATATATATCTGCATAAACCGTATAACTTTCCGCGATCTGAACCCCTTGACCTCACCGACCTCACCTGGTTCCGTCCTTGAGCATTTGCTTCATAAGATAGAGTACTATCAAATTAGTTAGTTGTTTTTTCCCTGATGTTTCGGGTTTCACCATTGCAGATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACTGTGAGATCATCTTTCCCGCAGTCTACTTTATGCACCAGATTAGGATTATCTCTGTGCTGTTCTGTATATTTATGTCATGCGTTGTGTGTTAAGGCTTAATACGTAAACAAACACTTAAACTTGGCCTCAGCTGGGAAGTAAACACTCCAACTTTGAGAGTGCACATCTACACGTGCACCTCAGACTCGTCTCCATTGTGTCATTTGAGCCACTCCAACTTACGAAATGATCATCTAGACACCCTCCAATATTTATATCTCACGTCAACTTGGATGTTCCATAAGACACGGTTATGACGAGTTTGAGTGATAAGTTATAAGTTGAAACCAAATTGAGGAATCTCTCTAAGTTGGAGTACTAAATTGTTAGCTGAGCCCGAGGCCAAGTTTGGATATATGTTTATGTATTATGCCTTGTGTTTTGGTGTGAACTGAAAGGGATTTGACTAACACTCAAAAGTGTTAATAAAACTTGTAAGGACTATAAGGGTCGTTAAGATTCGTTGCCTAAATAGGAAAGAGACCGCCTTTCTGAAACAGACTAAAAAGGAAAGTAATACAGGCAAATTGATACATTGGATCTTCATAATCATCTTGTTCTTTACGATAATTGAACATTTGTTGCTCCCCGGTAAGAGTGATGAACTAGTCATTCACCAATGTTTTCCTAGAAATGACGATAATGACAACACTTCTTGTGCTTTCAGGTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAGATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGCCCACGAATCCCTTGTCTCTTTGCTAGCCTTCCCTGATCTGTGAGAGATATGTATTCAATGGCGGATCTAGAGCATAATCTACGGGTTTTACATAACCTAGTAGCTTTTTCGCGGACCTTGTAAAATATCTATATATATTTGATTCTTGTTTCCT</genome_strand>
        <mrna_strand>TCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAGATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGCCCACGAATCCCTTGTCTCTTTGCTAGCCTTCCCTGATCTGTGAGAGATATGTATTCAATGGCGGATCTAGAGCATAATCTACGGGTTTTACATAACCTAGTAGCTTTTTCGCGGACCTTGTAAAATATCTATATATATTTGATTCTTGTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270873" ref_strand="+" ref_description="SGN-E270873 [cLEM-6-D3]">
      <seq>tcaaattctacatagcctatagcttcaaaaattgttgctaagctaaacttgaaggtacatccagaaaggggattttactcagaaacatttagagataactcagttattctctccagatctcatcttccatctacatataaggttgatcgacctgtcagtacatgcatctacttcttgctaccttctggaagtgcgtctcatcttcaccggataccttgtgcagaaacatggcatttttatatgggagagccaatcactgtgatggagctaaacgaaactgatggcaaggtgaagttaacttgcgttggacccgatcccctcgtaaatgatcaattcgtgcagtatacagtacctccaaatgtatgggtttggcgcatttcccacgaaggattacaacatatctttcgatatgcaagtaacgaaagcacctacaagagatggtgagaaacatttctctctagttggatgcacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="70239" stop="73535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70539" g_stop="70674" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70675" i_stop="72192" i_length="1518">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72193" g_stop="72314" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="258" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72315" i_stop="73020" i_length="706">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73021" g_stop="73235" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="474" r_length="216" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E270873" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70539" e_stop="70674"/>
          <exon e_start="72193" e_stop="72314"/>
          <exon e_start="73021" e_stop="73235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACATGTAAGTTTTTTTTTTTTTTTTTGTATAAATTTAATTTACTTTTTGGATCTTGAATTTCTTAGATCCCTCATGAGATTTTTGGATCTTAGATCTGTTTTTCATCCATATGTTTTTAGGATGTTTACTTGGATATTGCTATATGAAGTGTGATGGATATGTGATTTGGACTTTTAGGATCTCAAATTGCCCCCAAAAACCATGATTTGGAAATGGTAGTAACAAAAGAAATTTAATATGTAAAAAATTAGACGTAATACGTAAATATACCCTTTATTTTAACTTCATTTTACATTTACGCCCTTTAATTTTGATTGTGCACAAATCGACACTTAAACTCTTATAAAGTTAAACAAATAGACACACGAGTCCTACATGTCACAATACACGTAGGACACAAATTTTCATGGGCATAATACATAAATATGCCCTTTAACTTGGCTTCGAATCACATATATGCCCTTCAATTTTTGGTTTACACAAGTAGACACTTAAACTTGTATAAAGTAGAACAAGTAGACACACACGTCCTACATGTCATTTTTTGTCCTATGTGGTGTCCTACGTGTATTTTGCAATGTAAGACTCATGTGTTTATTTATTAGTTGGATAGTTAAAGTGTCTGTTTGTGCATTATGAAAGTTAGAGGACAAAGTTAAAATTTGAAACCAAGTTTAGGGTCCATTATATGTATTATGCCTATATAGGATGTCATGCAGGACGTTTGTGTCTATTTGTTTAATTTTATACAAGTTTAAGTGTCTGCTTGTGCACACCCAAAGTTGGAGGGCATAAATCAGAGTGCATGTTAATTTTATGTATTATGCCTAAAAAAAATTAACATGCACTCTGATTTTGCTATTTTGGGTGTGTACAAGCAGTTAATTGAACTTTTATAAAATTGAACAGTAGACACATGAGCATTCTGTGACATAATACGCATAGGACACTACATAGAATTGTTCGTTTTTATACAAGTGTATACCTGTGCGCATTCAATGTTGAAGGGCATAAATGTGAAATGATGCTAAGTTAAAAGGGCATATTTATGTATTATGCCTATTTTAAATTTTGTAGAAAGATATTCGTGTTCGGTTGTTTGAATTATATACAAGGAATAACTAGTTACTACTTTTATTGATTTGTAGATCTTTATGACATTATGCGTACTTAGAAGTTCGTCATCACAAATATCTATTTATAAAAGAAACATGAAGATATGTAATTTATTTATGGGCTTAAGATATTTCGATATTCTGTTTCTTAATTTTACTATCTCATATGTATCACCAGCAACATTTGCAGTGGTGTAACCAGTATTTCATTAAGCAAATGAAAAGCATAAGGAGGTTCAATATCTGCTATATATATCTGCATAAACCGTATAACTTTCCGCGATCTGAACCCCTTGACCTCACCGACCTCACCTGGTTCCGTCCTTGAGCATTTGCTTCATAAGATAGAGTACTATCAAATTAGTTAGTTGTTTTTTCCCTGATGTTTCGGGTTTCACCATTGCAGATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACTGTGAGATCATCTTTCCCGCAGTCTACTTTATGCACCAGATTAGGATTATCTCTGTGCTGTTCTGTATATTTATGTCATGCGTTGTGTGTTAAGGCTTAATACGTAAACAAACACTTAAACTTGGCCTCAGCTGGGAAGTAAACACTCCAACTTTGAGAGTGCACATCTACACGTGCACCTCAGACTCGTCTCCATTGTGTCATTTGAGCCACTCCAACTTACGAAATGATCATCTAGACACCCTCCAATATTTATATCTCACGTCAACTTGGATGTTCCATAAGACACGGTTATGACGAGTTTGAGTGATAAGTTATAAGTTGAAACCAAATTGAGGAATCTCTCTAAGTTGGAGTACTAAATTGTTAGCTGAGCCCGAGGCCAAGTTTGGATATATGTTTATGTATTATGCCTTGTGTTTTGGTGTGAACTGAAAGGGATTTGACTAACACTCAAAAGTGTTAATAAAACTTGTAAGGACTATAAGGGTCGTTAAGATTCGTTGCCTAAATAGGAAAGAGACCGCCTTTCTGAAACAGACTAAAAAGGAAAGTAATACAGGCAAATTGATACATTGGATCTTCATAATCATCTTGTTCTTTACGATAATTGAACATTTGTTGCTCCCCGGTAAGAGTGATGAACTAGTCATTCACCAATGTTTTCCTAGAAATGACGATAATGACAACACTTCTTGTGCTTTCAGGTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTAT-GGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTG</genome_strand>
        <mrna_strand>TCAAATTCTACATAGCCTATAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAAGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAAATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTTCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299597" ref_strand="+" ref_description="SGN-E299597 [cLEW-20-K19]">
      <seq>tacagagcctacagcttcaaaaattgttgctaagctaaacttgaaggtacatccagaagggggattttactcagaaacatttagagataactcagttattctctccagatctcatcttccatctacatataaggttgatcgacctgtcagtacatgcatctacttcttgctaccttctggaagtgcgtctcatcttcaccggataccttgtgcagaaacatggcatttttatatgggagagccaatcactgtgatggagctaaacgaaactgatggcaaggtgaagttaacttgcgttggacccgatcccctcgtagatgatcaattcgtgcagtatacagtacctccaaatgtatggtttggcgcatttcccacgaaggattacaacatatcttccgatatgcaagtaacgaaagcacctacaagagatggtgagaaacatttctctctagttggatgcacttgtgctccagcattccagtttgaagattttgaattagcaaaacgttctgatcttgtctcgcgttttcctgcccacgaatcccttgtctctttgctagccttccctgatctgtgagagatatgtattcaatggcggatctagagcataatctacgggttttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="70247" stop="73697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70547" g_stop="70674" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70675" i_stop="72192" i_length="1518">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72193" g_stop="72314" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="250" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72315" i_stop="73020" i_length="706">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73021" g_stop="73397" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="627" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E299597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70547" e_stop="70674"/>
          <exon e_start="72193" e_stop="72314"/>
          <exon e_start="73021" e_stop="73397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACATGTAAGTTTTTTTTTTTTTTTTTGTATAAATTTAATTTACTTTTTGGATCTTGAATTTCTTAGATCCCTCATGAGATTTTTGGATCTTAGATCTGTTTTTCATCCATATGTTTTTAGGATGTTTACTTGGATATTGCTATATGAAGTGTGATGGATATGTGATTTGGACTTTTAGGATCTCAAATTGCCCCCAAAAACCATGATTTGGAAATGGTAGTAACAAAAGAAATTTAATATGTAAAAAATTAGACGTAATACGTAAATATACCCTTTATTTTAACTTCATTTTACATTTACGCCCTTTAATTTTGATTGTGCACAAATCGACACTTAAACTCTTATAAAGTTAAACAAATAGACACACGAGTCCTACATGTCACAATACACGTAGGACACAAATTTTCATGGGCATAATACATAAATATGCCCTTTAACTTGGCTTCGAATCACATATATGCCCTTCAATTTTTGGTTTACACAAGTAGACACTTAAACTTGTATAAAGTAGAACAAGTAGACACACACGTCCTACATGTCATTTTTTGTCCTATGTGGTGTCCTACGTGTATTTTGCAATGTAAGACTCATGTGTTTATTTATTAGTTGGATAGTTAAAGTGTCTGTTTGTGCATTATGAAAGTTAGAGGACAAAGTTAAAATTTGAAACCAAGTTTAGGGTCCATTATATGTATTATGCCTATATAGGATGTCATGCAGGACGTTTGTGTCTATTTGTTTAATTTTATACAAGTTTAAGTGTCTGCTTGTGCACACCCAAAGTTGGAGGGCATAAATCAGAGTGCATGTTAATTTTATGTATTATGCCTAAAAAAAATTAACATGCACTCTGATTTTGCTATTTTGGGTGTGTACAAGCAGTTAATTGAACTTTTATAAAATTGAACAGTAGACACATGAGCATTCTGTGACATAATACGCATAGGACACTACATAGAATTGTTCGTTTTTATACAAGTGTATACCTGTGCGCATTCAATGTTGAAGGGCATAAATGTGAAATGATGCTAAGTTAAAAGGGCATATTTATGTATTATGCCTATTTTAAATTTTGTAGAAAGATATTCGTGTTCGGTTGTTTGAATTATATACAAGGAATAACTAGTTACTACTTTTATTGATTTGTAGATCTTTATGACATTATGCGTACTTAGAAGTTCGTCATCACAAATATCTATTTATAAAAGAAACATGAAGATATGTAATTTATTTATGGGCTTAAGATATTTCGATATTCTGTTTCTTAATTTTACTATCTCATATGTATCACCAGCAACATTTGCAGTGGTGTAACCAGTATTTCATTAAGCAAATGAAAAGCATAAGGAGGTTCAATATCTGCTATATATATCTGCATAAACCGTATAACTTTCCGCGATCTGAACCCCTTGACCTCACCGACCTCACCTGGTTCCGTCCTTGAGCATTTGCTTCATAAGATAGAGTACTATCAAATTAGTTAGTTGTTTTTTCCCTGATGTTTCGGGTTTCACCATTGCAGATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACTGTGAGATCATCTTTCCCGCAGTCTACTTTATGCACCAGATTAGGATTATCTCTGTGCTGTTCTGTATATTTATGTCATGCGTTGTGTGTTAAGGCTTAATACGTAAACAAACACTTAAACTTGGCCTCAGCTGGGAAGTAAACACTCCAACTTTGAGAGTGCACATCTACACGTGCACCTCAGACTCGTCTCCATTGTGTCATTTGAGCCACTCCAACTTACGAAATGATCATCTAGACACCCTCCAATATTTATATCTCACGTCAACTTGGATGTTCCATAAGACACGGTTATGACGAGTTTGAGTGATAAGTTATAAGTTGAAACCAAATTGAGGAATCTCTCTAAGTTGGAGTACTAAATTGTTAGCTGAGCCCGAGGCCAAGTTTGGATATATGTTTATGTATTATGCCTTGTGTTTTGGTGTGAACTGAAAGGGATTTGACTAACACTCAAAAGTGTTAATAAAACTTGTAAGGACTATAAGGGTCGTTAAGATTCGTTGCCTAAATAGGAAAGAGACCGCCTTTCTGAAACAGACTAAAAAGGAAAGTAATACAGGCAAATTGATACATTGGATCTTCATAATCATCTTGTTCTTTACGATAATTGAACATTTGTTGCTCCCCGGTAAGAGTGATGAACTAGTCATTCACCAATGTTTTCCTAGAAATGACGATAATGACAACACTTCTTGTGCTTTCAGGTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAGATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGCCCACGAATCCCTTGTCTCTTTGCTAGCCTTCCCTGATCTGTGAGAGATATGTATTCAATGGCGGATCTAGAGCATAATCTACGGGTTTTACAT</genome_strand>
        <mrna_strand>TACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAGATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGCCCACGAATCCCTTGTCTCTTTGCTAGCCTTCCCTGATCTGTGAGAGATATGTATTCAATGGCGGATCTAGAGCATAATCTACGGGTTTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377965" ref_strand="+" ref_description="SGN-E377965 [TUS-20-F10](-)">
      <seq>aaaatcattaagtcaaccacaaagaggaaggttcattgtgatgatgagaagatagaagaacgcttaatacagaagacaatattactacaatacccaggcttcggttttggtaatctcactgctacaattgagaatattcctcctggagccatcgataaagaggacgaagcagagattattgcaaaagcaacgtctaattgttttgggaagttgtgtggtctatgctgctgttgcagttgctgcattacagcgtgttcgaatatgaatcatcagtgtgcaattgcactcacacaatgtctaggtgcctttggatgtttaggttgcttcgcttattgtcaatactgctgttgtgaaaatcataaataaaaaaaaaagggcagctcgatggactaagctcccactatacgcggggttcggagaatggaccggaccacaagagtctgttgtggagataatcaatgagaagaaaattacaactactcctacaacttcaactttctccccatgattttgtgtcaactaatgacagattataaagttagttgatagtgaacatattcatggttctttttttatcctctccccatatttttgtataattatttttacaatatttttcaatagatacatatttttttctaagaagttgatcatcaatttgtaaataattgtattcaattgtttttgaatgttttttattggaaaaaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="79585" stop="77854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79285" g_stop="79256" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79255" i_stop="78837" i_length="419">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78836" g_stop="78147" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="720" r_length="690" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E377965" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79285" e_stop="79256"/>
          <exon e_start="78836" e_stop="78147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCATTAAGTCAACCACAAAGAGGAAGGTATGATGGAATTTTTAGAGCTTCAACTTTTGTATCATATTCTGAGTAGACAGTTTGGTAATGATAGAATTCACAAATGGCTAAACTTGCTCAGTTATCACATTTAATATTAACTCATTCGTCTACATGCTAAATGAGTAATGATGATCTCTAGAAGTTCACTTCCGAGATAATGACAATCTGGATAACAAGTCAAATAACTATATCTTGGTATTAGTTTGTGGAATTGAAATCCAGCAAGGGAAATTTAACAGCCTACTAGTGATGTTGTCCTCTGTGTTCTGCCGATGTAAGACTCTTATCCTAAGTTAGGGTGTCGTAGGAAACCTCACACCAGACTAATAAGAAAACATATGGTAAAATGATTCATTTCACTATCACACTCGTCTTCTTTCTGTAACCAAAGCTTAATGAATCAGGTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCATCAGTGTGCAATTGCACTCACACAATGTCTAGGTGCCTTTGGATGTTTAGGTTGCTTCGCTTATTGTCAATACTGCTGTTGTGAAAATCATAAATAAAAAAAAAAGGGCAGCTCGATGGACTAAGCTCCCACTATACGCGGGGTTCGGAGAATGGACCGGACCACAAGAGTCTGTTGTGGAGATAATCAATGAGAAGAAAATTACAACTACTCCTACAACTTCAACTTTCTCCCCATGATTTTGTGTCAACTAATGACAGATTATAAAGTTAGTTGATAGTGAACATATTCATGGTTCTTTTTTTATCCTCTCCCCATATTTTTGTATAATTATTTTTACAATATTTTTCAATAGATACATATTTTTTTCTAAGAAGTTGATCATCAATTTGTAAATAATTGTATTCAATTGTTTTTGAATGTTTTTTATTGGAGAGAAGAAAATTCCTTA</genome_strand>
        <mrna_strand>AAAATCATTAAGTCAACCACAAAGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCATCAGTGTGCAATTGCACTCACACAATGTCTAGGTGCCTTTGGATGTTTAGGTTGCTTCGCTTATTGTCAATACTGCTGTTGTGAAAATCATAAATAAAAAAAAAAGGGCAGCTCGATGGACTAAGCTCCCACTATACGCGGGGTTCGGAGAATGGACCGGACCACAAGAGTCTGTTGTGGAGATAATCAATGAGAAGAAAATTACAACTACTCCTACAACTTCAACTTTCTCCCCATGATTTTGTGTCAACTAATGACAGATTATAAAGTTAGTTGATAGTGAACATATTCATGGTTCTTTTTTTATCCTCTCCCCATATTTTTGTATAATTATTTTTACAATATTTTTCAATAGATACATATTTTTTTCTAAGAAGTTGATCATCAATTTGTAAATAATTGTATTCAATTGTTTTTGAATGTTTTTTATTGGAAAAAAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259284" ref_strand="+" ref_description="SGN-E259284 [cLEG-43-P10]">
      <seq>taatttctcggtggagctgaaaggtttcaagtccaaagccatacctcttgacaaggcaagggtgaagcagcagattgaaatactcacagctcaggcatggtttacacaaaataaggatcttgaaaaaaagatagcaaaaatgagtatacaagacgccgtcatctctgagtatacacgcatggcattggtggaggcggaaaaagtgaaaatcattaagtcaaccacaaagaggaaggttcattgtgatgatgagaagatagaagaacgcttaatacagaagacaatattactacaatacccaggcttcggttttggtaatctcactgctacaattgagaatattcctcctggagccatcgataaagaggacgaagcagagattattgcaaaagcaacgtctaattgttttgggaagttgtgtggtctatgctgctgttgcagttgctgcattacagcgtgttcgaatatgaatcatcagtgtgcaattgcactcacacaatgtctaggtgcctttggatgtttaggttgcttcgcttattgtcaatactgctgttgtgaaaatcataaataaaaaaaaaagggcagctcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="80609" stop="78181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80309" g_stop="80255" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80254" i_stop="79589" i_length="666">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79588" g_stop="79514" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="130" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79513" i_stop="79361" i_length="153">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79360" g_stop="79256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="235" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79255" i_stop="78837" i_length="419">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78836" g_stop="78481" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="591" r_length="356" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E259284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80309" e_stop="80255"/>
          <exon e_start="79588" e_stop="79514"/>
          <exon e_start="79360" e_stop="79256"/>
          <exon e_start="78836" e_stop="78481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAGGTAAGGCAGCATACTCAGTAATAGATGCATAATCAATAGACAATGCATGTTTTGTGGCTTTTGGAATCGCCTGTCAATCTAGACTATTTATCTATATCTGATATTTGATCATAATGATAACTATCTTTCTATGTATTGTTATTGTATCATACATTAGATAAAAAATTGAAGGAGGTTGCTTTCCTTTAATTTCTCTTATATTTTCATCATGGCTTCTTCATTACTATATTCCCTTCTCTTACGTGCTTTGATATGCTATACTTGAGCTGAGGGTCTGTCGGACACAGTCTCTCTACCAGCACGAGGTAGGAGTAAGGTCTCTGTACACCACGCTCCCCAGACCCCACATCCCACTATAGAGTATGTTCTTATTGCTTTGCTTTGTAGGGCTCTTTCTTTGTCAATTTAAAATTTCCGGAGTTAATGAAACTGATCAGCGAAGGGTCACTTTCTTCAAACCATTTCATTCTAATACTAAATAAGGACTCTCTTTATCTATTAGTGCATACCATATTGAGGACAATTGCTCAGTTTATCTGTCTGTTTTCTTGATCGAACTACTGAGAACAGCTTATGGCTTTCCGCTGAACGCCCATATATTAGTGAACTTGGTTTAAGAGGATCCTCTTAAATATTAATTTAATCTCATGTATTTTGAACACGCAGGCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAGGTTACTACTTCCTACTTTTTTATGTTTGAACATGAACGGTTTATCCCGATCCTATATATGACTTCACCCTTTATATTCCTGATGTTGTTCTCAAGTAGTTTTATCAACTTAGCCCTTGTCTTCCGTTACTGAGCCCTTATACTTTGTTAGCAGATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAGGTATGATGGAATTTTTAGAGCTTCAACTTTTGTATCATATTCTGAGTAGACAGTTTGGTAATGATAGAATTCACAAATGGCTAAACTTGCTCAGTTATCACATTTAATATTAACTCATTCGTCTACATGCTAAATGAGTAATGATGATCTCTAGAAGTTCACTTCCGAGATAATGACAATCTGGATAACAAGTCAAATAACTATATCTTGGTATTAGTTTGTGGAATTGAAATCCAGCAAGGGAAATTTAACAGCCTACTAGTGATGTTGTCCTCTGTGTTCTGCCGATGTAAGACTCTTATCCTAAGTTAGGGTGTCGTAGGAAACCTCACACCAGACTAATAAGAAAACATATGGTAAAATGATTCATTTCACTATCACACTCGTCTTCTTTCTGTAACCAAAGCTTAATGAATCAGGTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCATCAGTGTGCAATTGCACTCACACAATGTCTAGGTGCCTTTGGATGTTTAGGTTGCTTCGCTTATTGTCAATACTGCTGTTGTGAAAATCATAAATAAAAAAAAAAGGGCAGCTCGAT</genome_strand>
        <mrna_strand>TAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAG.........................................................................................................................................................ATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCATCAGTGTGCAATTGCACTCACACAATGTCTAGGTGCCTTTGGATGTTTAGGTTGCTTCGCTTATTGTCAATACTGCTGTTGTGAAAATCATAAATAAAAAAAAAAGGGCAGCTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377966" ref_strand="+" ref_description="SGN-E377966 [TUS-20-F10]">
      <seq>ttttgtgataggtgtatcccgctcaaattccagacctttcatctgaaggacctgtagtcttatcaggtagataccaaggagtgtttcctgagatgctaaaagctaaaggaatattaacagacatgagtaatttctcggtggagctgaaaggtttcaagtccaaagccatacctcttgacaaggcaagggtgaagcagcagattgaaatactcacagctcaggcatggtttacacaaaataaggatcttgaaaaaaagatagcaaaaatgagtatacaagacgccgtcatctctgagtatacacgcatggcattggtggaggcggaaaaagtgaaaatcattaagtcaaccacaaagaggaaggttcattgtgatgatgagaagatagaagaacgcttaatacagaagacaatattactacaatacccaggcttcggttttggtaatctcactgctacaattgagaatattcctcctggagccatcgataaagaggacgaagcagagattattgcaaaagcaacgtctaattgttttgggaagttgtgtggtctatgctgctgttgcagttgctgcattacagcgtgttcgaatatgaatcatcagtgtgcaattgcactcacacaatgtctaggtgcctttggatgtttaggttgcttcgcttattgtcaatactgctgttgtgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="80736" stop="78210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80436" g_stop="80255" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80254" i_stop="79589" i_length="666">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79588" g_stop="79514" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="257" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79513" i_stop="79361" i_length="153">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79360" g_stop="79256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="362" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79255" i_stop="78837" i_length="419">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78836" g_stop="78510" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="689" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E377966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80436" e_stop="80255"/>
          <exon e_start="79588" e_stop="79514"/>
          <exon e_start="79360" e_stop="79256"/>
          <exon e_start="78836" e_stop="78510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAGGTAAGGCAGCATACTCAGTAATAGATGCATAATCAATAGACAATGCATGTTTTGTGGCTTTTGGAATCGCCTGTCAATCTAGACTATTTATCTATATCTGATATTTGATCATAATGATAACTATCTTTCTATGTATTGTTATTGTATCATACATTAGATAAAAAATTGAAGGAGGTTGCTTTCCTTTAATTTCTCTTATATTTTCATCATGGCTTCTTCATTACTATATTCCCTTCTCTTACGTGCTTTGATATGCTATACTTGAGCTGAGGGTCTGTCGGACACAGTCTCTCTACCAGCACGAGGTAGGAGTAAGGTCTCTGTACACCACGCTCCCCAGACCCCACATCCCACTATAGAGTATGTTCTTATTGCTTTGCTTTGTAGGGCTCTTTCTTTGTCAATTTAAAATTTCCGGAGTTAATGAAACTGATCAGCGAAGGGTCACTTTCTTCAAACCATTTCATTCTAATACTAAATAAGGACTCTCTTTATCTATTAGTGCATACCATATTGAGGACAATTGCTCAGTTTATCTGTCTGTTTTCTTGATCGAACTACTGAGAACAGCTTATGGCTTTCCGCTGAACGCCCATATATTAGTGAACTTGGTTTAAGAGGATCCTCTTAAATATTAATTTAATCTCATGTATTTTGAACACGCAGGCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAGGTTACTACTTCCTACTTTTTTATGTTTGAACATGAACGGTTTATCCCGATCCTATATATGACTTCACCCTTTATATTCCTGATGTTGTTCTCAAGTAGTTTTATCAACTTAGCCCTTGTCTTCCGTTACTGAGCCCTTATACTTTGTTAGCAGATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAGGTATGATGGAATTTTTAGAGCTTCAACTTTTGTATCATATTCTGAGTAGACAGTTTGGTAATGATAGAATTCACAAATGGCTAAACTTGCTCAGTTATCACATTTAATATTAACTCATTCGTCTACATGCTAAATGAGTAATGATGATCTCTAGAAGTTCACTTCCGAGATAATGACAATCTGGATAACAAGTCAAATAACTATATCTTGGTATTAGTTTGTGGAATTGAAATCCAGCAAGGGAAATTTAACAGCCTACTAGTGATGTTGTCCTCTGTGTTCTGCCGATGTAAGACTCTTATCCTAAGTTAGGGTGTCGTAGGAAACCTCACACCAGACTAATAAGAAAACATATGGTAAAATGATTCATTTCACTATCACACTCGTCTTCTTTCTGTAACCAAAGCTTAATGAATCAGGTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCATCAGTGTGCAATTGCACTCACACAATGTCTAGGTGCCTTTGGATGTTTAGGTTGCTTCGCTTATTGTCAATACTGCTGTTGTGAAAAT</genome_strand>
        <mrna_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAG.........................................................................................................................................................ATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCATCAGTGTGCAATTGCACTCACACAATGTCTAGGTGCCTTTGGATGTTTAGGTTGCTTCGCTTATTGTCAATACTGCTGTTGTGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233067" ref_strand="+" ref_description="SGN-E233067 [cLED-6-K18]">
      <seq>ttttgtgataggtgtatcccgctcaaattccagacctttcatctgaaggacctgtagtcttatcaggtagataccaaggagtgtttcctgagatgctaaaagctaaaggaatattaacagacatgagtaatttctcggtggagctgaaaggtttcaagtccaaagccatacctcttgacaaggcaagggtgaagcagcagattgaaatactcacagctcaggcatggtttacacaaaataaggatcttgaaaaaaagatagcaaaaatgagtatacaagacgccgtcatctctgagtatacacgcatggcattggtggaggcggaaaaagtgaaaatcattaagtcaaccacaaagaggaaggttcattgtgatgatgagaagatagaagaacgcttaatacagaagacaatattactacaatacccaggcttcggttttggtaatctcactgctacaattgagaatattcctcctggagccatcgataaagaggacgaagcagagattattgcaaaagcaacgtctaattgttttgggaagttgtgtggtctatgctgctgttgcagttgctgcattacagcgtgttcgaatatgaatcatcagtgtgcaattgcactcacacaatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="80736" stop="78269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80436" g_stop="80255" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80254" i_stop="79589" i_length="666">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79588" g_stop="79514" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="257" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79513" i_stop="79361" i_length="153">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79360" g_stop="79256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="362" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79255" i_stop="78837" i_length="419">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78836" g_stop="78569" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="630" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E233067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80436" e_stop="80255"/>
          <exon e_start="79588" e_stop="79514"/>
          <exon e_start="79360" e_stop="79256"/>
          <exon e_start="78836" e_stop="78569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAGGTAAGGCAGCATACTCAGTAATAGATGCATAATCAATAGACAATGCATGTTTTGTGGCTTTTGGAATCGCCTGTCAATCTAGACTATTTATCTATATCTGATATTTGATCATAATGATAACTATCTTTCTATGTATTGTTATTGTATCATACATTAGATAAAAAATTGAAGGAGGTTGCTTTCCTTTAATTTCTCTTATATTTTCATCATGGCTTCTTCATTACTATATTCCCTTCTCTTACGTGCTTTGATATGCTATACTTGAGCTGAGGGTCTGTCGGACACAGTCTCTCTACCAGCACGAGGTAGGAGTAAGGTCTCTGTACACCACGCTCCCCAGACCCCACATCCCACTATAGAGTATGTTCTTATTGCTTTGCTTTGTAGGGCTCTTTCTTTGTCAATTTAAAATTTCCGGAGTTAATGAAACTGATCAGCGAAGGGTCACTTTCTTCAAACCATTTCATTCTAATACTAAATAAGGACTCTCTTTATCTATTAGTGCATACCATATTGAGGACAATTGCTCAGTTTATCTGTCTGTTTTCTTGATCGAACTACTGAGAACAGCTTATGGCTTTCCGCTGAACGCCCATATATTAGTGAACTTGGTTTAAGAGGATCCTCTTAAATATTAATTTAATCTCATGTATTTTGAACACGCAGGCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAGGTTACTACTTCCTACTTTTTTATGTTTGAACATGAACGGTTTATCCCGATCCTATATATGACTTCACCCTTTATATTCCTGATGTTGTTCTCAAGTAGTTTTATCAACTTAGCCCTTGTCTTCCGTTACTGAGCCCTTATACTTTGTTAGCAGATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAGGTATGATGGAATTTTTAGAGCTTCAACTTTTGTATCATATTCTGAGTAGACAGTTTGGTAATGATAGAATTCACAAATGGCTAAACTTGCTCAGTTATCACATTTAATATTAACTCATTCGTCTACATGCTAAATGAGTAATGATGATCTCTAGAAGTTCACTTCCGAGATAATGACAATCTGGATAACAAGTCAAATAACTATATCTTGGTATTAGTTTGTGGAATTGAAATCCAGCAAGGGAAATTTAACAGCCTACTAGTGATGTTGTCCTCTGTGTTCTGCCGATGTAAGACTCTTATCCTAAGTTAGGGTGTCGTAGGAAACCTCACACCAGACTAATAAGAAAACATATGGTAAAATGATTCATTTCACTATCACACTCGTCTTCTTTCTGTAACCAAAGCTTAATGAATCAGGTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCATCAGTGTGCAATTGCACTCACACAATGTC</genome_strand>
        <mrna_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAG.........................................................................................................................................................ATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCATCAGTGTGCAATTGCACTCACACAATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228168" ref_strand="+" ref_description="SGN-E228168 [cLED-2-E9]">
      <seq>ttttgtgataggtgtatcccgctcaaattccagacctttcatctgaaggacctgtagtcttatcaggtagataccaaggagtgtttcctgagatgctaaaagctaaaggaatattaacagacatgagtaatttctcggtggagctgaaaggtttcaagtccaaagccatacctcttgacaaggcaagggtgaagcagcagattgaaatactcacagctcacgcatggtttacacaaaataaggatcttgaaaaaaagatagcaaaaatgagtatacaagacgccgtcatctctgagtatacacgcatggcattggtggaggcggaaaaagtgaaaatcattaagtcaaccacaaagaggaaggttcattgtgatgatgagaagatagaagaacgcttaatacagaagacaatattactacaatacccaggcttcggttttggtaatctcactgctacaattgagaatattcctcctggagccatcgataaagaggacgaagcagagattattgcaaaagcaacgtctaattgttttgggaagttgtgtggtctatgctgctgttgcagttgctgcattacagcgtgttcgaatatgaatcatcagtgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="80736" stop="78289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80436" g_stop="80255" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80254" i_stop="79589" i_length="666">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79588" g_stop="79514" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="257" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79513" i_stop="79361" i_length="153">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79360" g_stop="79256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="362" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79255" i_stop="78837" i_length="419">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78836" g_stop="78589" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="610" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E228168" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80436" e_stop="80255"/>
          <exon e_start="79588" e_stop="79514"/>
          <exon e_start="79360" e_stop="79256"/>
          <exon e_start="78836" e_stop="78589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAGGTAAGGCAGCATACTCAGTAATAGATGCATAATCAATAGACAATGCATGTTTTGTGGCTTTTGGAATCGCCTGTCAATCTAGACTATTTATCTATATCTGATATTTGATCATAATGATAACTATCTTTCTATGTATTGTTATTGTATCATACATTAGATAAAAAATTGAAGGAGGTTGCTTTCCTTTAATTTCTCTTATATTTTCATCATGGCTTCTTCATTACTATATTCCCTTCTCTTACGTGCTTTGATATGCTATACTTGAGCTGAGGGTCTGTCGGACACAGTCTCTCTACCAGCACGAGGTAGGAGTAAGGTCTCTGTACACCACGCTCCCCAGACCCCACATCCCACTATAGAGTATGTTCTTATTGCTTTGCTTTGTAGGGCTCTTTCTTTGTCAATTTAAAATTTCCGGAGTTAATGAAACTGATCAGCGAAGGGTCACTTTCTTCAAACCATTTCATTCTAATACTAAATAAGGACTCTCTTTATCTATTAGTGCATACCATATTGAGGACAATTGCTCAGTTTATCTGTCTGTTTTCTTGATCGAACTACTGAGAACAGCTTATGGCTTTCCGCTGAACGCCCATATATTAGTGAACTTGGTTTAAGAGGATCCTCTTAAATATTAATTTAATCTCATGTATTTTGAACACGCAGGCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAGGTTACTACTTCCTACTTTTTTATGTTTGAACATGAACGGTTTATCCCGATCCTATATATGACTTCACCCTTTATATTCCTGATGTTGTTCTCAAGTAGTTTTATCAACTTAGCCCTTGTCTTCCGTTACTGAGCCCTTATACTTTGTTAGCAGATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAGGTATGATGGAATTTTTAGAGCTTCAACTTTTGTATCATATTCTGAGTAGACAGTTTGGTAATGATAGAATTCACAAATGGCTAAACTTGCTCAGTTATCACATTTAATATTAACTCATTCGTCTACATGCTAAATGAGTAATGATGATCTCTAGAAGTTCACTTCCGAGATAATGACAATCTGGATAACAAGTCAAATAACTATATCTTGGTATTAGTTTGTGGAATTGAAATCCAGCAAGGGAAATTTAACAGCCTACTAGTGATGTTGTCCTCTGTGTTCTGCCGATGTAAGACTCTTATCCTAAGTTAGGGTGTCGTAGGAAACCTCACACCAGACTAATAAGAAAACATATGGTAAAATGATTCATTTCACTATCACACTCGTCTTCTTTCTGTAACCAAAGCTTAATGAATCAGGTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCATCAGTGTGC</genome_strand>
        <mrna_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCACGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAG.........................................................................................................................................................ATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCATCAGTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233191" ref_strand="+" ref_description="SGN-E233191 [cLED-6-N7]">
      <seq>ttttgtgataggtgtatcccgctcaaattccagacctttcatctgaaggacctgtagtcttatcaggtagataccaaggagtgtttcctgagatgctaaaagctaaaggaatattaacagacatgagtaatttctcggtggagctgaaaggtttcaagtccaaagccatacctcttgacaaggcaagggtgaagcagcagattgaaatactcacagctcaggcatggtttacacaaaataaggatcttgaaaaaaagatagcaaaaatgagtatacaagacgccgtcatctctgagtatacacgcatggcattggtggaggcggaaaaagtgaaaatcattaagtcaaccacaaagaggaaggttcattgtgatgatgagaagatagaagaacgcttaatacagaagacaatattactacaatacccaggcttcggttttggtaatctcactgctacaattgagaatattcctcctggagccatcgataaagaggacgaagcagagattattgcaaaagcaacgtctaattgttttgggaagttgtgtggtctatgctgctgttgcagttgctgcattacagcgtgttcgaatatgaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="80736" stop="78298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80436" g_stop="80255" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80254" i_stop="79589" i_length="666">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79588" g_stop="79514" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="257" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79513" i_stop="79361" i_length="153">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79360" g_stop="79256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="362" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79255" i_stop="78837" i_length="419">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78836" g_stop="78598" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="601" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E233191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80436" e_stop="80255"/>
          <exon e_start="79588" e_stop="79514"/>
          <exon e_start="79360" e_stop="79256"/>
          <exon e_start="78836" e_stop="78598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAGGTAAGGCAGCATACTCAGTAATAGATGCATAATCAATAGACAATGCATGTTTTGTGGCTTTTGGAATCGCCTGTCAATCTAGACTATTTATCTATATCTGATATTTGATCATAATGATAACTATCTTTCTATGTATTGTTATTGTATCATACATTAGATAAAAAATTGAAGGAGGTTGCTTTCCTTTAATTTCTCTTATATTTTCATCATGGCTTCTTCATTACTATATTCCCTTCTCTTACGTGCTTTGATATGCTATACTTGAGCTGAGGGTCTGTCGGACACAGTCTCTCTACCAGCACGAGGTAGGAGTAAGGTCTCTGTACACCACGCTCCCCAGACCCCACATCCCACTATAGAGTATGTTCTTATTGCTTTGCTTTGTAGGGCTCTTTCTTTGTCAATTTAAAATTTCCGGAGTTAATGAAACTGATCAGCGAAGGGTCACTTTCTTCAAACCATTTCATTCTAATACTAAATAAGGACTCTCTTTATCTATTAGTGCATACCATATTGAGGACAATTGCTCAGTTTATCTGTCTGTTTTCTTGATCGAACTACTGAGAACAGCTTATGGCTTTCCGCTGAACGCCCATATATTAGTGAACTTGGTTTAAGAGGATCCTCTTAAATATTAATTTAATCTCATGTATTTTGAACACGCAGGCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAGGTTACTACTTCCTACTTTTTTATGTTTGAACATGAACGGTTTATCCCGATCCTATATATGACTTCACCCTTTATATTCCTGATGTTGTTCTCAAGTAGTTTTATCAACTTAGCCCTTGTCTTCCGTTACTGAGCCCTTATACTTTGTTAGCAGATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAGGTATGATGGAATTTTTAGAGCTTCAACTTTTGTATCATATTCTGAGTAGACAGTTTGGTAATGATAGAATTCACAAATGGCTAAACTTGCTCAGTTATCACATTTAATATTAACTCATTCGTCTACATGCTAAATGAGTAATGATGATCTCTAGAAGTTCACTTCCGAGATAATGACAATCTGGATAACAAGTCAAATAACTATATCTTGGTATTAGTTTGTGGAATTGAAATCCAGCAAGGGAAATTTAACAGCCTACTAGTGATGTTGTCCTCTGTGTTCTGCCGATGTAAGACTCTTATCCTAAGTTAGGGTGTCGTAGGAAACCTCACACCAGACTAATAAGAAAACATATGGTAAAATGATTCATTTCACTATCACACTCGTCTTCTTTCTGTAACCAAAGCTTAATGAATCAGGTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCA</genome_strand>
        <mrna_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAG.........................................................................................................................................................ATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235791" ref_strand="+" ref_description="SGN-E235791 [cLED-15-E4]">
      <seq>ttttgtgataggtgtatcccgctcaaattccagacctttcatctgaaggacctgtagtcttatcaggtagataccaaggagtgtttcctgagatgctaaaagctaaaggaatattaacagacatgagtaatttctcggtggagctgaaaggtttcaagtccaaagccatacctcttgacaaggcaagggtgaagcagcagattgaaatactcacagctcaggcatggtttacacaaaataaggatcttgaaaaaaagatagcaaaaatgagtatacaagacgccgtcatctctgagtatacacgcatggcattggtggaggcggaaaaagtgaaaatcattaagtcaaccacaaagaggaaggttcattgtgatgatgagaagatagaagaacgcttaatacagaagacaatattactacaatacccaggcttcggttttggtaatctcactgctacaattgagaatattcctcctggagccatcgataaagaggacgaagcagagattattgcaaaagcaacgtctaattgttttgggaagttgtgtggtctatgctgctggtgcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="80736" stop="78329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80436" g_stop="80255" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80254" i_stop="79589" i_length="666">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79588" g_stop="79514" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="257" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79513" i_stop="79361" i_length="153">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79360" g_stop="79256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="362" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79255" i_stop="78837" i_length="419">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78836" g_stop="78629" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="570" r_length="208" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E235791" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80436" e_stop="80255"/>
          <exon e_start="79588" e_stop="79514"/>
          <exon e_start="79360" e_stop="79256"/>
          <exon e_start="78836" e_stop="78629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAGGTAAGGCAGCATACTCAGTAATAGATGCATAATCAATAGACAATGCATGTTTTGTGGCTTTTGGAATCGCCTGTCAATCTAGACTATTTATCTATATCTGATATTTGATCATAATGATAACTATCTTTCTATGTATTGTTATTGTATCATACATTAGATAAAAAATTGAAGGAGGTTGCTTTCCTTTAATTTCTCTTATATTTTCATCATGGCTTCTTCATTACTATATTCCCTTCTCTTACGTGCTTTGATATGCTATACTTGAGCTGAGGGTCTGTCGGACACAGTCTCTCTACCAGCACGAGGTAGGAGTAAGGTCTCTGTACACCACGCTCCCCAGACCCCACATCCCACTATAGAGTATGTTCTTATTGCTTTGCTTTGTAGGGCTCTTTCTTTGTCAATTTAAAATTTCCGGAGTTAATGAAACTGATCAGCGAAGGGTCACTTTCTTCAAACCATTTCATTCTAATACTAAATAAGGACTCTCTTTATCTATTAGTGCATACCATATTGAGGACAATTGCTCAGTTTATCTGTCTGTTTTCTTGATCGAACTACTGAGAACAGCTTATGGCTTTCCGCTGAACGCCCATATATTAGTGAACTTGGTTTAAGAGGATCCTCTTAAATATTAATTTAATCTCATGTATTTTGAACACGCAGGCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAGGTTACTACTTCCTACTTTTTTATGTTTGAACATGAACGGTTTATCCCGATCCTATATATGACTTCACCCTTTATATTCCTGATGTTGTTCTCAAGTAGTTTTATCAACTTAGCCCTTGTCTTCCGTTACTGAGCCCTTATACTTTGTTAGCAGATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAGGTATGATGGAATTTTTAGAGCTTCAACTTTTGTATCATATTCTGAGTAGACAGTTTGGTAATGATAGAATTCACAAATGGCTAAACTTGCTCAGTTATCACATTTAATATTAACTCATTCGTCTACATGCTAAATGAGTAATGATGATCTCTAGAAGTTCACTTCCGAGATAATGACAATCTGGATAACAAGTCAAATAACTATATCTTGGTATTAGTTTGTGGAATTGAAATCCAGCAAGGGAAATTTAACAGCCTACTAGTGATGTTGTCCTCTGTGTTCTGCCGATGTAAGACTCTTATCCTAAGTTAGGGTGTCGTAGGAAACCTCACACCAGACTAATAAGAAAACATATGGTAAAATGATTCATTTCACTATCACACTCGTCTTCTTTCTGTAACCAAAGCTTAATGAATCAGGTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTT</genome_strand>
        <mrna_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAG.........................................................................................................................................................ATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGGTGCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239670" ref_strand="+" ref_description="SGN-E239670 [cLED-33-K19]">
      <seq>ttttgtgataggtgtatcccgctcaaattccagacctttcatctgaaggacctgtagtcttatcaggtagataccaaggagtgtttcctgagatgctaaaagctaaaggaatattaacagacatgagtaatttctcggtggagctgaaaggtttcaagtccaaagccatacctcttgacaaggcaagggtgaagcagcagattgaaatactcacagctcaggcatggtttacacaaaataaggatcttgaaaaaaagatagcaaaaatgagtatacaagacgccgtcatctctgagtatacacgcatggcattggtggaggcggaaaaagtgaaaatcattaagtcaaccacaaagaggaaggttcattgtgatgatgagaagatagaagaacgcttaatacagaagacaatattactacaatacccaggcttcggttttggtaatctcactgctacaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="80736" stop="78437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80436" g_stop="80255" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80254" i_stop="79589" i_length="666">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79588" g_stop="79514" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="257" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79513" i_stop="79361" i_length="153">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79360" g_stop="79256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="362" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79255" i_stop="78837" i_length="419">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78836" g_stop="78737" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="462" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E239670" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80436" e_stop="80255"/>
          <exon e_start="79588" e_stop="79514"/>
          <exon e_start="79360" e_stop="79256"/>
          <exon e_start="78836" e_stop="78737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAGGTAAGGCAGCATACTCAGTAATAGATGCATAATCAATAGACAATGCATGTTTTGTGGCTTTTGGAATCGCCTGTCAATCTAGACTATTTATCTATATCTGATATTTGATCATAATGATAACTATCTTTCTATGTATTGTTATTGTATCATACATTAGATAAAAAATTGAAGGAGGTTGCTTTCCTTTAATTTCTCTTATATTTTCATCATGGCTTCTTCATTACTATATTCCCTTCTCTTACGTGCTTTGATATGCTATACTTGAGCTGAGGGTCTGTCGGACACAGTCTCTCTACCAGCACGAGGTAGGAGTAAGGTCTCTGTACACCACGCTCCCCAGACCCCACATCCCACTATAGAGTATGTTCTTATTGCTTTGCTTTGTAGGGCTCTTTCTTTGTCAATTTAAAATTTCCGGAGTTAATGAAACTGATCAGCGAAGGGTCACTTTCTTCAAACCATTTCATTCTAATACTAAATAAGGACTCTCTTTATCTATTAGTGCATACCATATTGAGGACAATTGCTCAGTTTATCTGTCTGTTTTCTTGATCGAACTACTGAGAACAGCTTATGGCTTTCCGCTGAACGCCCATATATTAGTGAACTTGGTTTAAGAGGATCCTCTTAAATATTAATTTAATCTCATGTATTTTGAACACGCAGGCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAGGTTACTACTTCCTACTTTTTTATGTTTGAACATGAACGGTTTATCCCGATCCTATATATGACTTCACCCTTTATATTCCTGATGTTGTTCTCAAGTAGTTTTATCAACTTAGCCCTTGTCTTCCGTTACTGAGCCCTTATACTTTGTTAGCAGATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAGGTATGATGGAATTTTTAGAGCTTCAACTTTTGTATCATATTCTGAGTAGACAGTTTGGTAATGATAGAATTCACAAATGGCTAAACTTGCTCAGTTATCACATTTAATATTAACTCATTCGTCTACATGCTAAATGAGTAATGATGATCTCTAGAAGTTCACTTCCGAGATAATGACAATCTGGATAACAAGTCAAATAACTATATCTTGGTATTAGTTTGTGGAATTGAAATCCAGCAAGGGAAATTTAACAGCCTACTAGTGATGTTGTCCTCTGTGTTCTGCCGATGTAAGACTCTTATCCTAAGTTAGGGTGTCGTAGGAAACCTCACACCAGACTAATAAGAAAACATATGGTAAAATGATTCATTTCACTATCACACTCGTCTTCTTTCTGTAACCAAAGCTTAATGAATCAGGTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTG</genome_strand>
        <mrna_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAG.........................................................................................................................................................ATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232930" ref_strand="+" ref_description="SGN-E232930 [cLED-8-P4]">
      <seq>ttttgtgataggtgtatcccgctcaaattccagacctttcatctgaaggacctgtagtcttatcaggtagataccaaggagtgtttcctgagatgctaaaagctaaaggaatattaacagacatgagtaatttctcggtggagctgaaaggtttcaagtccaaagccatacctcttgacaaggcaagggtgaagcagcagattgaaatactcacagctcaggcatggtttacacaaaataaggatcttgaaaaaaagatagcaaaaatgagtatacaagacgccgtcatctctgagtatacacgcatggcattggtggaggcggaaaaagtgaaaatcattaagtcaaccacaaagaggaaggttcattgtgatgatgagaagatagaagaacgcttaatacagaagacaatattactacaataccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="80736" stop="78472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80436" g_stop="80255" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80254" i_stop="79589" i_length="666">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79588" g_stop="79514" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="257" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79513" i_stop="79361" i_length="153">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79360" g_stop="79256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="362" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79255" i_stop="78837" i_length="419">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78836" g_stop="78772" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="427" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E232930" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80436" e_stop="80255"/>
          <exon e_start="79588" e_stop="79514"/>
          <exon e_start="79360" e_stop="79256"/>
          <exon e_start="78836" e_stop="78772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAGGTAAGGCAGCATACTCAGTAATAGATGCATAATCAATAGACAATGCATGTTTTGTGGCTTTTGGAATCGCCTGTCAATCTAGACTATTTATCTATATCTGATATTTGATCATAATGATAACTATCTTTCTATGTATTGTTATTGTATCATACATTAGATAAAAAATTGAAGGAGGTTGCTTTCCTTTAATTTCTCTTATATTTTCATCATGGCTTCTTCATTACTATATTCCCTTCTCTTACGTGCTTTGATATGCTATACTTGAGCTGAGGGTCTGTCGGACACAGTCTCTCTACCAGCACGAGGTAGGAGTAAGGTCTCTGTACACCACGCTCCCCAGACCCCACATCCCACTATAGAGTATGTTCTTATTGCTTTGCTTTGTAGGGCTCTTTCTTTGTCAATTTAAAATTTCCGGAGTTAATGAAACTGATCAGCGAAGGGTCACTTTCTTCAAACCATTTCATTCTAATACTAAATAAGGACTCTCTTTATCTATTAGTGCATACCATATTGAGGACAATTGCTCAGTTTATCTGTCTGTTTTCTTGATCGAACTACTGAGAACAGCTTATGGCTTTCCGCTGAACGCCCATATATTAGTGAACTTGGTTTAAGAGGATCCTCTTAAATATTAATTTAATCTCATGTATTTTGAACACGCAGGCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAGGTTACTACTTCCTACTTTTTTATGTTTGAACATGAACGGTTTATCCCGATCCTATATATGACTTCACCCTTTATATTCCTGATGTTGTTCTCAAGTAGTTTTATCAACTTAGCCCTTGTCTTCCGTTACTGAGCCCTTATACTTTGTTAGCAGATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAGGTATGATGGAATTTTTAGAGCTTCAACTTTTGTATCATATTCTGAGTAGACAGTTTGGTAATGATAGAATTCACAAATGGCTAAACTTGCTCAGTTATCACATTTAATATTAACTCATTCGTCTACATGCTAAATGAGTAATGATGATCTCTAGAAGTTCACTTCCGAGATAATGACAATCTGGATAACAAGTCAAATAACTATATCTTGGTATTAGTTTGTGGAATTGAAATCCAGCAAGGGAAATTTAACAGCCTACTAGTGATGTTGTCCTCTGTGTTCTGCCGATGTAAGACTCTTATCCTAAGTTAGGGTGTCGTAGGAAACCTCACACCAGACTAATAAGAAAACATATGGTAAAATGATTCATTTCACTATCACACTCGTCTTCTTTCTGTAACCAAAGCTTAATGAATCAGGTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCC</genome_strand>
        <mrna_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAG.........................................................................................................................................................ATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244662" ref_strand="+" ref_description="SGN-E244662 [cLED-38-K13]">
      <seq>ttttgtgataggtgtatcccgctcaaattccagacctttcatctgaaggacctgtagtcttatcaggtagataccaaggagtgtttcctgagatgctaaaagctaaaggaatattaacagacatgagtaatttctcggtggagctgaaaggtttcaagtccaaagccatacctcttgacaaggcaagggtgaagcagcagattgaaatactcacagctcaggcatggtttacacaaaataaggatcttgaaaaaaagatagcaaaaatgagtatacaagacgccgtcatctctgagtatacacgcatggcattggtggaggcggaaaaagtgaaaatcattaagtcaaccacaaagaggaaggttcattgtgatgatgagaagatagaagaacgcttaatacagaagacaatattactacaataccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="80736" stop="78472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80436" g_stop="80255" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80254" i_stop="79589" i_length="666">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79588" g_stop="79514" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="257" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79513" i_stop="79361" i_length="153">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79360" g_stop="79256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="362" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79255" i_stop="78837" i_length="419">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78836" g_stop="78772" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="427" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E244662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80436" e_stop="80255"/>
          <exon e_start="79588" e_stop="79514"/>
          <exon e_start="79360" e_stop="79256"/>
          <exon e_start="78836" e_stop="78772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAGGTAAGGCAGCATACTCAGTAATAGATGCATAATCAATAGACAATGCATGTTTTGTGGCTTTTGGAATCGCCTGTCAATCTAGACTATTTATCTATATCTGATATTTGATCATAATGATAACTATCTTTCTATGTATTGTTATTGTATCATACATTAGATAAAAAATTGAAGGAGGTTGCTTTCCTTTAATTTCTCTTATATTTTCATCATGGCTTCTTCATTACTATATTCCCTTCTCTTACGTGCTTTGATATGCTATACTTGAGCTGAGGGTCTGTCGGACACAGTCTCTCTACCAGCACGAGGTAGGAGTAAGGTCTCTGTACACCACGCTCCCCAGACCCCACATCCCACTATAGAGTATGTTCTTATTGCTTTGCTTTGTAGGGCTCTTTCTTTGTCAATTTAAAATTTCCGGAGTTAATGAAACTGATCAGCGAAGGGTCACTTTCTTCAAACCATTTCATTCTAATACTAAATAAGGACTCTCTTTATCTATTAGTGCATACCATATTGAGGACAATTGCTCAGTTTATCTGTCTGTTTTCTTGATCGAACTACTGAGAACAGCTTATGGCTTTCCGCTGAACGCCCATATATTAGTGAACTTGGTTTAAGAGGATCCTCTTAAATATTAATTTAATCTCATGTATTTTGAACACGCAGGCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAGGTTACTACTTCCTACTTTTTTATGTTTGAACATGAACGGTTTATCCCGATCCTATATATGACTTCACCCTTTATATTCCTGATGTTGTTCTCAAGTAGTTTTATCAACTTAGCCCTTGTCTTCCGTTACTGAGCCCTTATACTTTGTTAGCAGATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAGGTATGATGGAATTTTTAGAGCTTCAACTTTTGTATCATATTCTGAGTAGACAGTTTGGTAATGATAGAATTCACAAATGGCTAAACTTGCTCAGTTATCACATTTAATATTAACTCATTCGTCTACATGCTAAATGAGTAATGATGATCTCTAGAAGTTCACTTCCGAGATAATGACAATCTGGATAACAAGTCAAATAACTATATCTTGGTATTAGTTTGTGGAATTGAAATCCAGCAAGGGAAATTTAACAGCCTACTAGTGATGTTGTCCTCTGTGTTCTGCCGATGTAAGACTCTTATCCTAAGTTAGGGTGTCGTAGGAAACCTCACACCAGACTAATAAGAAAACATATGGTAAAATGATTCATTTCACTATCACACTCGTCTTCTTTCTGTAACCAAAGCTTAATGAATCAGGTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCC</genome_strand>
        <mrna_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAG.........................................................................................................................................................ATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244622" ref_strand="+" ref_description="SGN-E244622 [cLED-38-L2]">
      <seq>ttttgtgataggtgtatcccgctcaaatgccagacctttcatctgaaggacctgtagtcttatcaggtagataccaaggagtgtttcctgagatgctaaaagctaaaggaatattaacagacatgagtaatttctgggtggagctgaaaggtttcaagtccaaagccatacctcttgacaaggcaagggtgaagcagcagattgaaatactcacagctcaggcatggtttacacaaaataaggatcttgaaaaaaagatagcggaaatgaatatacaagacgccggcatctctgagtatacacgcatggcattggtggaggcggaaaaagtgaaaatcattaagtcaaccacaaagaggaaggttcattgtgatgatgagaagatagaagaacgcttcatacagaagacaatattactacaatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="80736" stop="78473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80436" g_stop="80255" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80254" i_stop="79589" i_length="666">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79588" g_stop="79514" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="257" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79513" i_stop="79361" i_length="153">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79360" g_stop="79256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="362" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79255" i_stop="78837" i_length="419">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78836" g_stop="78773" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="426" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E244622" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80436" e_stop="80255"/>
          <exon e_start="79588" e_stop="79514"/>
          <exon e_start="79360" e_stop="79256"/>
          <exon e_start="78836" e_stop="78773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAGGTAAGGCAGCATACTCAGTAATAGATGCATAATCAATAGACAATGCATGTTTTGTGGCTTTTGGAATCGCCTGTCAATCTAGACTATTTATCTATATCTGATATTTGATCATAATGATAACTATCTTTCTATGTATTGTTATTGTATCATACATTAGATAAAAAATTGAAGGAGGTTGCTTTCCTTTAATTTCTCTTATATTTTCATCATGGCTTCTTCATTACTATATTCCCTTCTCTTACGTGCTTTGATATGCTATACTTGAGCTGAGGGTCTGTCGGACACAGTCTCTCTACCAGCACGAGGTAGGAGTAAGGTCTCTGTACACCACGCTCCCCAGACCCCACATCCCACTATAGAGTATGTTCTTATTGCTTTGCTTTGTAGGGCTCTTTCTTTGTCAATTTAAAATTTCCGGAGTTAATGAAACTGATCAGCGAAGGGTCACTTTCTTCAAACCATTTCATTCTAATACTAAATAAGGACTCTCTTTATCTATTAGTGCATACCATATTGAGGACAATTGCTCAGTTTATCTGTCTGTTTTCTTGATCGAACTACTGAGAACAGCTTATGGCTTTCCGCTGAACGCCCATATATTAGTGAACTTGGTTTAAGAGGATCCTCTTAAATATTAATTTAATCTCATGTATTTTGAACACGCAGGCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAGGTTACTACTTCCTACTTTTTTATGTTTGAACATGAACGGTTTATCCCGATCCTATATATGACTTCACCCTTTATATTCCTGATGTTGTTCTCAAGTAGTTTTATCAACTTAGCCCTTGTCTTCCGTTACTGAGCCCTTATACTTTGTTAGCAGATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAGGTATGATGGAATTTTTAGAGCTTCAACTTTTGTATCATATTCTGAGTAGACAGTTTGGTAATGATAGAATTCACAAATGGCTAAACTTGCTCAGTTATCACATTTAATATTAACTCATTCGTCTACATGCTAAATGAGTAATGATGATCTCTAGAAGTTCACTTCCGAGATAATGACAATCTGGATAACAAGTCAAATAACTATATCTTGGTATTAGTTTGTGGAATTGAAATCCAGCAAGGGAAATTTAACAGCCTACTAGTGATGTTGTCCTCTGTGTTCTGCCGATGTAAGACTCTTATCCTAAGTTAGGGTGTCGTAGGAAACCTCACACCAGACTAATAAGAAAACATATGGTAAAATGATTCATTTCACTATCACACTCGTCTTCTTTCTGTAACCAAAGCTTAATGAATCAGGTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACC</genome_strand>
        <mrna_strand>TTTTGTGATAGGTGTATCCCGCTCAAATGCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTGGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAG.........................................................................................................................................................ATAGCGGAAATGAATATACAAGACGCCGGCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTGTGATGATGAGAAGATAGAAGAACGCTTCATACAGAAGACAATATTACTACAATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242444" ref_strand="+" ref_description="SGN-E242444 [cLED-30-F2]">
      <seq>ttttgtgataggtgtatcccgctcaaattccagacctttcatctgaaggacctgtagtcttatcaggtagataccaaggagtgtttcctgagatgctaaaagctaaaggaatattaacagacatgagtaatttctcggtggagctgaaaggtttcaagtccaaagccatacctcttgacaaggcaagggtgaagcagcagattgaaatactcacagctcaggcatggtttacacaaaataaggatcttgaaaaaaagatagcaaaaatgagtatacaagacgccgtcatctctgagtatacacgcatggcattggtggaggcggaaaaagtgaaaatcattaagtcaaccacaaagaggaaggttcattgtgatgatgagaagatagaagaacgcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="80736" stop="78500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80436" g_stop="80255" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80254" i_stop="79589" i_length="666">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79588" g_stop="79514" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="257" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79513" i_stop="79361" i_length="153">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79360" g_stop="79256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="362" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79255" i_stop="78837" i_length="419">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78836" g_stop="78800" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="399" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E242444" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80436" e_stop="80255"/>
          <exon e_start="79588" e_stop="79514"/>
          <exon e_start="79360" e_stop="79256"/>
          <exon e_start="78836" e_stop="78800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAGGTAAGGCAGCATACTCAGTAATAGATGCATAATCAATAGACAATGCATGTTTTGTGGCTTTTGGAATCGCCTGTCAATCTAGACTATTTATCTATATCTGATATTTGATCATAATGATAACTATCTTTCTATGTATTGTTATTGTATCATACATTAGATAAAAAATTGAAGGAGGTTGCTTTCCTTTAATTTCTCTTATATTTTCATCATGGCTTCTTCATTACTATATTCCCTTCTCTTACGTGCTTTGATATGCTATACTTGAGCTGAGGGTCTGTCGGACACAGTCTCTCTACCAGCACGAGGTAGGAGTAAGGTCTCTGTACACCACGCTCCCCAGACCCCACATCCCACTATAGAGTATGTTCTTATTGCTTTGCTTTGTAGGGCTCTTTCTTTGTCAATTTAAAATTTCCGGAGTTAATGAAACTGATCAGCGAAGGGTCACTTTCTTCAAACCATTTCATTCTAATACTAAATAAGGACTCTCTTTATCTATTAGTGCATACCATATTGAGGACAATTGCTCAGTTTATCTGTCTGTTTTCTTGATCGAACTACTGAGAACAGCTTATGGCTTTCCGCTGAACGCCCATATATTAGTGAACTTGGTTTAAGAGGATCCTCTTAAATATTAATTTAATCTCATGTATTTTGAACACGCAGGCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAGGTTACTACTTCCTACTTTTTTATGTTTGAACATGAACGGTTTATCCCGATCCTATATATGACTTCACCCTTTATATTCCTGATGTTGTTCTCAAGTAGTTTTATCAACTTAGCCCTTGTCTTCCGTTACTGAGCCCTTATACTTTGTTAGCAGATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAGGTATGATGGAATTTTTAGAGCTTCAACTTTTGTATCATATTCTGAGTAGACAGTTTGGTAATGATAGAATTCACAAATGGCTAAACTTGCTCAGTTATCACATTTAATATTAACTCATTCGTCTACATGCTAAATGAGTAATGATGATCTCTAGAAGTTCACTTCCGAGATAATGACAATCTGGATAACAAGTCAAATAACTATATCTTGGTATTAGTTTGTGGAATTGAAATCCAGCAAGGGAAATTTAACAGCCTACTAGTGATGTTGTCCTCTGTGTTCTGCCGATGTAAGACTCTTATCCTAAGTTAGGGTGTCGTAGGAAACCTCACACCAGACTAATAAGAAAACATATGGTAAAATGATTCATTTCACTATCACACTCGTCTTCTTTCTGTAACCAAAGCTTAATGAATCAGGTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAA</genome_strand>
        <mrna_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAG.........................................................................................................................................................ATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276241" ref_strand="+" ref_description="SGN-E276241 [cLEN-21-P20]">
      <seq>ctccttactgatgtgtctggctatgatcgaatgaatatggaattgtgtatcccgctcaaattccagacctttcatctgaaggacctgtagtcttatcaggtagataccaaggagtgtttcctgagatgctaaaagctaaaggaatattaacagacatgagtaatttctcggtggagctgaaaggtttcaagtccaaagccatacctcttgacaaggcaagggtgaagcagcagattgaaatactcacagctcaggcatggtttacacaaaataaggatcttgaaaaaaagatagcaaaaatgagtatacaagacgccgtcatctctgagtatacacgcatggcattggtggaggcggaaaaagtgaaaatcattaagtcaaccacaaagaggaaggttcattgtgatgatgagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="80888" stop="78516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80588" g_stop="80545" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80544" i_stop="80426" i_length="119">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80425" g_stop="80255" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="215" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80254" i_stop="79589" i_length="666">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79588" g_stop="79514" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="290" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79513" i_stop="79361" i_length="153">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79360" g_stop="79256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="395" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79255" i_stop="78837" i_length="419">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78836" g_stop="78816" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="416" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E276241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80588" e_stop="80545"/>
          <exon e_start="80425" e_stop="80255"/>
          <exon e_start="79588" e_stop="79514"/>
          <exon e_start="79360" e_stop="79256"/>
          <exon e_start="78836" e_stop="78816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTACTGATGTGTCTGGCTATGATCGAATGAATATGGAATTGTAATGATTTGTTATGAGCTCTCAGTGTCGTTTTAAAAGACTGCTATAATTAAATTGATGCAGTCTTACCTATGTAACTACATGTTTCCTGAGAAAGAACCGTTAAAATTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAGGTAAGGCAGCATACTCAGTAATAGATGCATAATCAATAGACAATGCATGTTTTGTGGCTTTTGGAATCGCCTGTCAATCTAGACTATTTATCTATATCTGATATTTGATCATAATGATAACTATCTTTCTATGTATTGTTATTGTATCATACATTAGATAAAAAATTGAAGGAGGTTGCTTTCCTTTAATTTCTCTTATATTTTCATCATGGCTTCTTCATTACTATATTCCCTTCTCTTACGTGCTTTGATATGCTATACTTGAGCTGAGGGTCTGTCGGACACAGTCTCTCTACCAGCACGAGGTAGGAGTAAGGTCTCTGTACACCACGCTCCCCAGACCCCACATCCCACTATAGAGTATGTTCTTATTGCTTTGCTTTGTAGGGCTCTTTCTTTGTCAATTTAAAATTTCCGGAGTTAATGAAACTGATCAGCGAAGGGTCACTTTCTTCAAACCATTTCATTCTAATACTAAATAAGGACTCTCTTTATCTATTAGTGCATACCATATTGAGGACAATTGCTCAGTTTATCTGTCTGTTTTCTTGATCGAACTACTGAGAACAGCTTATGGCTTTCCGCTGAACGCCCATATATTAGTGAACTTGGTTTAAGAGGATCCTCTTAAATATTAATTTAATCTCATGTATTTTGAACACGCAGGCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAGGTTACTACTTCCTACTTTTTTATGTTTGAACATGAACGGTTTATCCCGATCCTATATATGACTTCACCCTTTATATTCCTGATGTTGTTCTCAAGTAGTTTTATCAACTTAGCCCTTGTCTTCCGTTACTGAGCCCTTATACTTTGTTAGCAGATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAGGTATGATGGAATTTTTAGAGCTTCAACTTTTGTATCATATTCTGAGTAGACAGTTTGGTAATGATAGAATTCACAAATGGCTAAACTTGCTCAGTTATCACATTTAATATTAACTCATTCGTCTACATGCTAAATGAGTAATGATGATCTCTAGAAGTTCACTTCCGAGATAATGACAATCTGGATAACAAGTCAAATAACTATATCTTGGTATTAGTTTGTGGAATTGAAATCCAGCAAGGGAAATTTAACAGCCTACTAGTGATGTTGTCCTCTGTGTTCTGCCGATGTAAGACTCTTATCCTAAGTTAGGGTGTCGTAGGAAACCTCACACCAGACTAATAAGAAAACATATGGTAAAATGATTCATTTCACTATCACACTCGTCTTCTTTCTGTAACCAAAGCTTAATGAATCAGGTTCATTGTGATGATGAGAAG</genome_strand>
        <mrna_strand>CTCCTTACTGATGTGTCTGGCTATGATCGAATGAATATGGAATT.......................................................................................................................GTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAG.........................................................................................................................................................ATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTGTGATGATGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239692" ref_strand="+" ref_description="SGN-E239692 [cLED-33-E24]">
      <seq>ttttgtgataggtgtattccgctcaaattccagacctttcatctgagggacctgtagtcttatcaggtagataccaaggagtgtttcctgagatgctgaaagctaaaggaatattaacagacatgagtaatttctcggtggagctgaaaggtttcaagtccaaagccatacctcttgacaaggcaagggtgaagcagcagattgaaatactcacagttcatgcatggtttacacataataaggatcttgaaaaaaagatatcagaaatgagtatacaagacgccgtcatctctgagtatacacgcatggcattggtggaggcggaaaaagtgaaaatcattaagtcaaccacaaagaggaaggttcattgtgatgatgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="80736" stop="78937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80436" g_stop="80255" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80254" i_stop="79589" i_length="666">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79588" g_stop="79514" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="257" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79513" i_stop="79361" i_length="153">
            <donor d_prob="0.946" d_score="0.94"/>
            <acceptor a_prob="0.818" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79360" g_stop="79256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="362" r_length="105" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E239692" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80436" e_stop="80255"/>
          <exon e_start="79588" e_stop="79514"/>
          <exon e_start="79360" e_stop="79256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAGGTAAGGCAGCATACTCAGTAATAGATGCATAATCAATAGACAATGCATGTTTTGTGGCTTTTGGAATCGCCTGTCAATCTAGACTATTTATCTATATCTGATATTTGATCATAATGATAACTATCTTTCTATGTATTGTTATTGTATCATACATTAGATAAAAAATTGAAGGAGGTTGCTTTCCTTTAATTTCTCTTATATTTTCATCATGGCTTCTTCATTACTATATTCCCTTCTCTTACGTGCTTTGATATGCTATACTTGAGCTGAGGGTCTGTCGGACACAGTCTCTCTACCAGCACGAGGTAGGAGTAAGGTCTCTGTACACCACGCTCCCCAGACCCCACATCCCACTATAGAGTATGTTCTTATTGCTTTGCTTTGTAGGGCTCTTTCTTTGTCAATTTAAAATTTCCGGAGTTAATGAAACTGATCAGCGAAGGGTCACTTTCTTCAAACCATTTCATTCTAATACTAAATAAGGACTCTCTTTATCTATTAGTGCATACCATATTGAGGACAATTGCTCAGTTTATCTGTCTGTTTTCTTGATCGAACTACTGAGAACAGCTTATGGCTTTCCGCTGAACGCCCATATATTAGTGAACTTGGTTTAAGAGGATCCTCTTAAATATTAATTTAATCTCATGTATTTTGAACACGCAGGCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAGGTTACTACTTCCTACTTTTTTATGTTTGAACATGAACGGTTTATCCCGATCCTATATATGACTTCACCCTTTATATTCCTGATGTTGTTCTCAAGTAGTTTTATCAACTTAGCCCTTGTCTTCCGTTACTGAGCCCTTATACTTTGTTAGCAGATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG</genome_strand>
        <mrna_strand>TTTTGTGATAGGTGTATTCCGCTCAAATTCCAGACCTTTCATCTGAGGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTGAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGTTCATGCATGGTTTACACATAATAAGGATCTTGAAAAAAAG.........................................................................................................................................................ATATCAGAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689313" ref_strand="+" ref_description="SGN-E689313 [t3_tus_84_A23]">
      <seq>tgaatatgaaaagttacgttggcgacccaaaaattgtgagatggaagattttactggtgttaaatttctgaaaaggatgcaaaacaaaactctggcgtttatcggggattcgcttggtagacagcaatttcagtcacttatgtgtatgattagtggtggaaaagatagacctaatgttcttgatgtggggcatgaatatggtctagtgcaatctcgtggttctggtcgacctgatggatgggcttttcgatttccagacaccaaaacaactattctttattattggtctgctagtctctgtgacttgacacctatnaatccatctgatcctgctactgattacgccatgcacctggaccgtcctccagcatttttgagtcatttccttccaaggttcgatgtccttgttctaaacacaggacaccattggaatagaggaaagcttaaggccaatcgatgggtcatgtatgtaggtggtgtccctaatacaaaccggaagattgtgactatnggtggtgccaagaatttcacaatccacagtattgtcaattgggtgaactcacagctgccaaaataccctcatgtaaaagcattctatcggactatatcccccagacatttctttaacggagattggaacacaggaggtacatgtgacaacactacaccactttccgaagggaaggaggttttacaagacgaatcangtgactatgatgcagcacgtgctgttagaggaacagacgttaagcttttggacatcactgctttatcccagctgagagatgaaggtcatatatctcgatacagcatcaaagcaacaccaggtgtccaggattgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="88303" stop="86449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88003" g_stop="87929" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87928" i_stop="87518" i_length="411">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87517" g_stop="86749" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="844" r_length="769" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E689313" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88003" e_stop="87929"/>
          <exon e_start="87517" e_stop="86749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATATGAAAAGTTACGTTGGCGACCCAAAAATTGTGAGATGGAAGATTTTACTGGTGTTAAATTTCTGAAAAGGTAGCGTTATTTTTCTTATGAAGTCTTTATTTCTGATCCTTGAATTCAAGTTTGAGATGTGGTCTACAAAAGAAACAAAAAGTTCTTTATTAACTTTATGAAAACCTTTTCTTTATTTGTTTCTAGCACAACTCAAGTAGTGTCTACCTTCACTCCGTTGTTATTTATCCAAGGCTAATATGACGGCGTTTGGCTTAATCAAATTATTAAGATGTTAAACCTGAAATGTATAATCTGTTACTGTAGAGCTATTTTTCGTGGCTTGTGGCTTGTTGTCATGAAAAAGTATTCACAATTCCGGAAGGTTATTTCTTATTACTTAGCATTGCTATATCTCTTCCTTGAGGTGAAATTATTTGGATTTGATTATTCTACATGTAAGAGATTCACTAAATTTGATGGTGCATCCAGGATGCAAAACAAAACTCTGGCGTTTATCGGGGATTCGCTTGGTAGACAGCAATTTCAGTCACTTATGTGTATGATTAGTGGTGGAAAAGATAGACCTAATGTTCTTGATGTGGGGCATGAATATGGTCTAGTGCAATCTCGTGGTTCTGGTCGACCTGATGGATGGGCTTTTCGATTTCCAGACACCAAAACAACTATTCTTTATTATTGGTCTGCTAGTCTCTGTGACTTGACACCTATAAATCCATCTGATCCTGCTACTGATTACGCCATGCACCTGGACCGTCCTCCAGCATTTTTGAGTCATTTCCTTCCAAGGTTCGATGTCCTTGTTCTAAACACAGGACACCATTGGAATAGAGGAAAGCTTAAGGCCAATCGATGGGTCATGTATGTAGGTGGTGTCCCTAATACAAACCGGAAGATTGTGACTATAGGTGGTGCCAAGAATTTCACAATCCACAGTATTGTCAATTGGGTGAACTCACAGCTGCCAAAATACCCTCATGTAAAAGCATTCTATCGGACTATATCCCCCAGACATTTCTTTAACGGAGATTGGAACACAGGAGGTACATGTGACAACACTACACCACTTTCCGAAGGGAAGGAGGTTTTACAAGACGAATCAAGTGACTATGATGCAGCACGTGCTGTTAGAGGAACAGACGTTAAGCTTTTGGACATCACTGCTTTATCCCAGCTGAGAGATGAAGGTCATATATCTCGATACAGCATCAAAGCAACACCAGGTGTCCAGGATTGTCTA</genome_strand>
        <mrna_strand>TGAATATGAAAAGTTACGTTGGCGACCCAAAAATTGTGAGATGGAAGATTTTACTGGTGTTAAATTTCTGAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAAAACAAAACTCTGGCGTTTATCGGGGATTCGCTTGGTAGACAGCAATTTCAGTCACTTATGTGTATGATTAGTGGTGGAAAAGATAGACCTAATGTTCTTGATGTGGGGCATGAATATGGTCTAGTGCAATCTCGTGGTTCTGGTCGACCTGATGGATGGGCTTTTCGATTTCCAGACACCAAAACAACTATTCTTTATTATTGGTCTGCTAGTCTCTGTGACTTGACACCTATNAATCCATCTGATCCTGCTACTGATTACGCCATGCACCTGGACCGTCCTCCAGCATTTTTGAGTCATTTCCTTCCAAGGTTCGATGTCCTTGTTCTAAACACAGGACACCATTGGAATAGAGGAAAGCTTAAGGCCAATCGATGGGTCATGTATGTAGGTGGTGTCCCTAATACAAACCGGAAGATTGTGACTATNGGTGGTGCCAAGAATTTCACAATCCACAGTATTGTCAATTGGGTGAACTCACAGCTGCCAAAATACCCTCATGTAAAAGCATTCTATCGGACTATATCCCCCAGACATTTCTTTAACGGAGATTGGAACACAGGAGGTACATGTGACAACACTACACCACTTTCCGAAGGGAAGGAGGTTTTACAAGACGAATCANGTGACTATGATGCAGCACGTGCTGTTAGAGGAACAGACGTTAAGCTTTTGGACATCACTGCTTTATCCCAGCTGAGAGATGAAGGTCATATATCTCGATACAGCATCAAAGCAACACCAGGTGTCCAGGATTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309725" ref_strand="+" ref_description="SGN-E309725 [cLEY-26-D1]">
      <seq>tcgtggttctggtcgacctgatggatgggcttttcgatttccagacaccaaaacaactattctttattattggtctgctagtctctgtgacttgacacctataaatccatctgatcctgctactgattacgccatgcacctggaccgtcctccagcatttttgagtcatttccttccaaggttcgatgtccttgttctaaacacaggacaccattggaatagaggaaagcttaaggccaatcgatgggtcatgtatgtaggtggtgtccctaatacaaaccggaagattgtgactataggtggtgccaagaatttcacaatccacagtattgtcaattgggtgaactcacagctgccaaaataccctcatgtaaaagcattctatcggactatatcccccagacatttctttaacggagattggaacacaggaggtacatgtgacaacactacaccactttccgaagggaaggaggttttacaagacgaatcaagtgactatgatgcagcacgtgctgttagaggaacagacgttaagcttttggacatcactgctttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="87679" stop="86519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87379" g_stop="86819" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E309725" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87379" e_stop="86819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGTTCTGGTCGACCTGATGGATGGGCTTTTCGATTTCCAGACACCAAAACAACTATTCTTTATTATTGGTCTGCTAGTCTCTGTGACTTGACACCTATAAATCCATCTGATCCTGCTACTGATTACGCCATGCACCTGGACCGTCCTCCAGCATTTTTGAGTCATTTCCTTCCAAGGTTCGATGTCCTTGTTCTAAACACAGGACACCATTGGAATAGAGGAAAGCTTAAGGCCAATCGATGGGTCATGTATGTAGGTGGTGTCCCTAATACAAACCGGAAGATTGTGACTATAGGTGGTGCCAAGAATTTCACAATCCACAGTATTGTCAATTGGGTGAACTCACAGCTGCCAAAATACCCTCATGTAAAAGCATTCTATCGGACTATATCCCCCAGACATTTCTTTAACGGAGATTGGAACACAGGAGGTACATGTGACAACACTACACCACTTTCCGAAGGGAAGGAGGTTTTACAAGACGAATCAAGTGACTATGATGCAGCACGTGCTGTTAGAGGAACAGACGTTAAGCTTTTGGACATCACTGCTTTATC</genome_strand>
        <mrna_strand>TCGTGGTTCTGGTCGACCTGATGGATGGGCTTTTCGATTTCCAGACACCAAAACAACTATTCTTTATTATTGGTCTGCTAGTCTCTGTGACTTGACACCTATAAATCCATCTGATCCTGCTACTGATTACGCCATGCACCTGGACCGTCCTCCAGCATTTTTGAGTCATTTCCTTCCAAGGTTCGATGTCCTTGTTCTAAACACAGGACACCATTGGAATAGAGGAAAGCTTAAGGCCAATCGATGGGTCATGTATGTAGGTGGTGTCCCTAATACAAACCGGAAGATTGTGACTATAGGTGGTGCCAAGAATTTCACAATCCACAGTATTGTCAATTGGGTGAACTCACAGCTGCCAAAATACCCTCATGTAAAAGCATTCTATCGGACTATATCCCCCAGACATTTCTTTAACGGAGATTGGAACACAGGAGGTACATGTGACAACACTACACCACTTTCCGAAGGGAAGGAGGTTTTACAAGACGAATCAAGTGACTATGATGCAGCACGTGCTGTTAGAGGAACAGACGTTAAGCTTTTGGACATCACTGCTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332319" ref_strand="+" ref_description="SGN-E332319 [cTOD-17-N21]">
      <seq>gaatatgaaaagttacgttggcgacccaaaaattgtgagatggaagattttactggtgttaaatttctgaaaaggatgcaaaacaaaactctggcgtttatcggggattcgcttggtagacagcaatttcagtcacttatgtgtatgattagtggtggaaaagatagacctaatgttcttgatgtggggcatgaatatggtctagtgcaatctcgtggttctggtcgacctgatggatgggcttttcgatttccagacaccaaaacaactattctttattattggtctgctagtctctgtgacttgacacctataaatccatctgatcctgctactgattacgccatgcacctggaccgtcctccagcatttttgagtcatttccttccaaggttcgatgtccttgttctaaacacaggacaccattggaatagaggaaagcttaaggccaatcgatgggtcatgtatgtaggtggtgtccctaatacaaaccggaagattgtgactataggtggtgccaagaatttcacaatccacagtattgtcaattgggtgaactcacagctgccaaaataccctcatgtaaaagcattctatcggactatatcccccagacatttctttaacggagattggaacacaggaggtacatgtgacaacactacaccactttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="88302" stop="86617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88002" g_stop="87929" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87928" i_stop="87518" i_length="411">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87517" g_stop="86917" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="675" r_length="601" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E332319" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88002" e_stop="87929"/>
          <exon e_start="87517" e_stop="86917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATGAAAAGTTACGTTGGCGACCCAAAAATTGTGAGATGGAAGATTTTACTGGTGTTAAATTTCTGAAAAGGTAGCGTTATTTTTCTTATGAAGTCTTTATTTCTGATCCTTGAATTCAAGTTTGAGATGTGGTCTACAAAAGAAACAAAAAGTTCTTTATTAACTTTATGAAAACCTTTTCTTTATTTGTTTCTAGCACAACTCAAGTAGTGTCTACCTTCACTCCGTTGTTATTTATCCAAGGCTAATATGACGGCGTTTGGCTTAATCAAATTATTAAGATGTTAAACCTGAAATGTATAATCTGTTACTGTAGAGCTATTTTTCGTGGCTTGTGGCTTGTTGTCATGAAAAAGTATTCACAATTCCGGAAGGTTATTTCTTATTACTTAGCATTGCTATATCTCTTCCTTGAGGTGAAATTATTTGGATTTGATTATTCTACATGTAAGAGATTCACTAAATTTGATGGTGCATCCAGGATGCAAAACAAAACTCTGGCGTTTATCGGGGATTCGCTTGGTAGACAGCAATTTCAGTCACTTATGTGTATGATTAGTGGTGGAAAAGATAGACCTAATGTTCTTGATGTGGGGCATGAATATGGTCTAGTGCAATCTCGTGGTTCTGGTCGACCTGATGGATGGGCTTTTCGATTTCCAGACACCAAAACAACTATTCTTTATTATTGGTCTGCTAGTCTCTGTGACTTGACACCTATAAATCCATCTGATCCTGCTACTGATTACGCCATGCACCTGGACCGTCCTCCAGCATTTTTGAGTCATTTCCTTCCAAGGTTCGATGTCCTTGTTCTAAACACAGGACACCATTGGAATAGAGGAAAGCTTAAGGCCAATCGATGGGTCATGTATGTAGGTGGTGTCCCTAATACAAACCGGAAGATTGTGACTATAGGTGGTGCCAAGAATTTCACAATCCACAGTATTGTCAATTGGGTGAACTCACAGCTGCCAAAATACCCTCATGTAAAAGCATTCTATCGGACTATATCCCCCAGACATTTCTTTAACGGAGATTGGAACACAGGAGGTACATGTGACAACACTACACCACTTTCC</genome_strand>
        <mrna_strand>GAATATGAAAAGTTACGTTGGCGACCCAAAAATTGTGAGATGGAAGATTTTACTGGTGTTAAATTTCTGAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAAAACAAAACTCTGGCGTTTATCGGGGATTCGCTTGGTAGACAGCAATTTCAGTCACTTATGTGTATGATTAGTGGTGGAAAAGATAGACCTAATGTTCTTGATGTGGGGCATGAATATGGTCTAGTGCAATCTCGTGGTTCTGGTCGACCTGATGGATGGGCTTTTCGATTTCCAGACACCAAAACAACTATTCTTTATTATTGGTCTGCTAGTCTCTGTGACTTGACACCTATAAATCCATCTGATCCTGCTACTGATTACGCCATGCACCTGGACCGTCCTCCAGCATTTTTGAGTCATTTCCTTCCAAGGTTCGATGTCCTTGTTCTAAACACAGGACACCATTGGAATAGAGGAAAGCTTAAGGCCAATCGATGGGTCATGTATGTAGGTGGTGTCCCTAATACAAACCGGAAGATTGTGACTATAGGTGGTGCCAAGAATTTCACAATCCACAGTATTGTCAATTGGGTGAACTCACAGCTGCCAAAATACCCTCATGTAAAAGCATTCTATCGGACTATATCCCCCAGACATTTCTTTAACGGAGATTGGAACACAGGAGGTACATGTGACAACACTACACCACTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312763" ref_strand="+" ref_description="SGN-E312763 [cTOA-8-F19]">
      <seq>gctgggggttatacatagagacaattttacagcaaccccggggagacaagattgcaactttgctaaaggcagatgggtcatagatgatagccgacctttatattctggatttggctgtaagcaatggttgtcatctatgtgggcttgtcgcttgacacaacgtacagattttgaatatgaaaagttacgttggcgacccaaaaattgtgagatggaagattttactggtgttaaatttctgaaaaggatgcaaaacaaaactctggcgtttatcggggattcgcttggtagacagcaatttcagtcacttatgtgtatgattagtggtggaaaagatagacctaatgttcttgatgtggggcatgaatatggtctattgcaatctcgtggttctggtcgacctgatggatgggcttttcgatttccatacaccaaaacaactattctttattattggtctgctagtctctgtgacttgacacctattaatccatctgatcctgctactgattacgccatgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="88637" stop="86940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88338" g_stop="88290" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88289" i_stop="88125" i_length="165">
            <donor d_prob="0.995" d_score="0.86"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88124" g_stop="87929" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="246" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87928" i_stop="87518" i_length="411">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87517" g_stop="87240" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="524" r_length="278" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E312763" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88338" e_stop="88290"/>
          <exon e_start="88124" e_stop="87929"/>
          <exon e_start="87517" e_stop="87240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGGGGTGA-ACATAGTGACAATTTTACAGCAACCCCGGAAAGACAAGGTGGCCTATCTTTCCTTTTTTATCCTTATTTATCTAATCACTGATTTGCTTTGTCATTTTCTCCGACCATGCAATCGTTGATATTGTTAAACTCAGAATTTGTCTACCAGTTCTTGAGATATCCCTTCTTTGGGTCTTCTATAATATGATAAGCCTTGTTTTCAGATTGCAACTTTGCTAAAGGCAGATGGGTCATAGATGATAGCCGACCTTTATATTCTGGATTTGGCTGTAAGCAATGGTTGTCATCTATGTGGGCTTGTCGCTTGACACAACGTACAGATTTTGAATATGAAAAGTTACGTTGGCGACCCAAAAATTGTGAGATGGAAGATTTTACTGGTGTTAAATTTCTGAAAAGGTAGCGTTATTTTTCTTATGAAGTCTTTATTTCTGATCCTTGAATTCAAGTTTGAGATGTGGTCTACAAAAGAAACAAAAAGTTCTTTATTAACTTTATGAAAACCTTTTCTTTATTTGTTTCTAGCACAACTCAAGTAGTGTCTACCTTCACTCCGTTGTTATTTATCCAAGGCTAATATGACGGCGTTTGGCTTAATCAAATTATTAAGATGTTAAACCTGAAATGTATAATCTGTTACTGTAGAGCTATTTTTCGTGGCTTGTGGCTTGTTGTCATGAAAAAGTATTCACAATTCCGGAAGGTTATTTCTTATTACTTAGCATTGCTATATCTCTTCCTTGAGGTGAAATTATTTGGATTTGATTATTCTACATGTAAGAGATTCACTAAATTTGATGGTGCATCCAGGATGCAAAACAAAACTCTGGCGTTTATCGGGGATTCGCTTGGTAGACAGCAATTTCAGTCACTTATGTGTATGATTAGTGGTGGAAAAGATAGACCTAATGTTCTTGATGTGGGGCATGAATATGGTCTAGTGCAATCTCGTGGTTCTGGTCGACCTGATGGATGGGCTTTTCGATTTCCAGACACCAAAACAACTATTCTTTATTATTGGTCTGCTAGTCTCTGTGACTTGACACCTATAAATCCATCTGATCCTGCTACTGATTACGCCATGCACC</genome_strand>
        <mrna_strand>GCTGGGGGTTATACATAGAGACAATTTTACAGCAACCCCGGGGAGACAAG.....................................................................................................................................................................ATTGCAACTTTGCTAAAGGCAGATGGGTCATAGATGATAGCCGACCTTTATATTCTGGATTTGGCTGTAAGCAATGGTTGTCATCTATGTGGGCTTGTCGCTTGACACAACGTACAGATTTTGAATATGAAAAGTTACGTTGGCGACCCAAAAATTGTGAGATGGAAGATTTTACTGGTGTTAAATTTCTGAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAAAACAAAACTCTGGCGTTTATCGGGGATTCGCTTGGTAGACAGCAATTTCAGTCACTTATGTGTATGATTAGTGGTGGAAAAGATAGACCTAATGTTCTTGATGTGGGGCATGAATATGGTCTATTGCAATCTCGTGGTTCTGGTCGACCTGATGGATGGGCTTTTCGATTTCCATACACCAAAACAACTATTCTTTATTATTGGTCTGCTAGTCTCTGTGACTTGACACCTATTAATCCATCTGATCCTGCTACTGATTACGCCATGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698067" ref_strand="+" ref_description="SGN-E698067 [FA05AF06]">
      <seq>gcaaaaataatgtccattgatggtggaatgacttcaagtccaaacatccctaagcttcaaggatgaagggaggtttgaaggtgtcacagatctctctcatcctgatcggattcgtgtgtgcttctgttcttcttttggcatatgtgaagagcctacttctttcttcttcagtactacctcagaatcatgtcttgcagctttctccagatcttagagtgaaagatgaagaagctttgggagaaggaagcggatcggagcaatcacaagacagtgttaactttgaatctgaaaaatatcctatttatgcaaactcttcaccggtgattaaggtgactgaagagttgattactcatgaacaaagaggaggtattgctccgaatatcactgaaaaaggagattcaaaagatgtttcagataaaaaaactggtttaatacaccaggaaattgacgtttccactgctgtgagttctgggggtgaacataatgacaattttaccgcaaccccccgaaagacaagattgcaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="89713" stop="88001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89413" g_stop="89208" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89207" i_stop="88837" i_length="371">
            <donor d_prob="0.171" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88836" g_stop="88678" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="366" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88677" i_stop="88440" i_length="238">
            <donor d_prob="0.793" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88439" g_stop="88290" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="517" r_length="151" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88289" i_stop="88125" i_length="165">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.938" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88124" g_stop="88113" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="529" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E698067" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89413" e_stop="89208"/>
          <exon e_start="88836" e_stop="88678"/>
          <exon e_start="88439" e_stop="88290"/>
          <exon e_start="88124" e_stop="88113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAATAATGTCCATTG-TGGTGGAATGAGTTCAAGTCCAAACATCCCTAAGCTTCAAGGATGAAGGGAGGTTTGAAGGTGTCACAGATCTCTCTCATCCTGATCGGATTCGTGTGTGCTTCTGTTCTTCTTTTGGCATATGTGAAGAGCCTACTTCTTTCTTCTTCAGTACTACCTCAGAATCATGTCTTGCAGCTTTCTCCAGGTTTGCATAAACCCTCTGACGTACCATTGCTGGATGATCACCTCTGTGAGTTCTGGGGGGTGAACATAGTGACAATTTTGGTTTGGCTGGATGATTACCTTTTGTCAAATGGTTTGGCTGGATGATTACCGCTGTGATCTTACTTTATGGTGGACATATTGCTGACTTTGTTGATCTAAGTGCATTTTGCTAAGCAGTAGTTTTTTGTTCTCAACTATTTATCTCCTTTGAGAATGGTCAAGTTCGTATATTTCTGCAACTAATTTTAAGTAATAAAGGCACTATCTGAATTAGGAGTTTAGGACTCAACTCCCTGGTGGAGATGTTGCAGGATCCTGTTGAGTTACTTATTATACGCTCTTCTCTTGCAGATCTTAGAGTGAAAGATGAAGAAGCTTTGGGAGAAGGAAGCGGATCGGAGCAATCACAAGACAGTGTTAACTTTGAATCTGAAAAATATCCTACTTATGCAAACTCTTCACCGGTGATTAAGGTGACTGAAGAGTTGATTACTCATGAAGAAAGAGGAGGTAGGTGTTGTTTCAGGGCATCATAATTTTCTCATCTCAAAGTATCTAAGCCTTGATGATTTAGAGGCATCATTTAACTCATGAAAATGGCATATTGCATTGTCATATATTACATTCACAGGGTCGTCTTGACGTGCTTAAGTGAATGTACTCTTTCATTTTATTCTGAGCTTCTACTAAAGTTAACCGACTCTACTCTCTACAATTTGATATTTAATAGTTTTTTTCGGCAATGCAGGTATTGCTCCGAATATCACTGAAAAAGGAGATTCAAAAGATGTTTCAGACAAAAAAACTGGTTTAATAGAGCAGGAAATTGACGTTTCCACTGCTGTGAGTTCTGGGGGTGAACATAGTGACAATTTTACAGCAA-CCCCGGAAAGACAAGGTGGCCTATCTTTCCTTTTTTATCCTTATTTATCTAATCACTGATTTGCTTTGTCATTTTCTCCGACCATGCAATCGTTGATATTGTTAAACTCAGAATTTGTCTACCAGTTCTTGAGATATCCCTTCTTTGGGTCTTCTATAATATGATAAGCCTTGTTTTCAGATTGCAACTTTG</genome_strand>
        <mrna_strand>GCAAAAATAATGTCCATTGATGGTGGAATGACTTCAAGTCCAAACATCCCTAAGCTTCAAGGATGAAGGGAGGTTTGAAGGTGTCACAGATCTCTCTCATCCTGATCGGATTCGTGTGTGCTTCTGTTCTTCTTTTGGCATATGTGAAGAGCCTACTTCTTTCTTCTTCAGTACTACCTCAGAATCATGTCTTGCAGCTTTCTCCAG...................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGAGTGAAAGATGAAGAAGCTTTGGGAGAAGGAAGCGGATCGGAGCAATCACAAGACAGTGTTAACTTTGAATCTGAAAAATATCCTATTTATGCAAACTCTTCACCGGTGATTAAGGTGACTGAAGAGTTGATTACTCATGAACAAAGAGGAG..............................................................................................................................................................................................................................................GTATTGCTCCGAATATCACTGAAAAAGGAGATTCAAAAGATGTTTCAGATAAAAAAACTGGTTTAATACACCAGGAAATTGACGTTTCCACTGCTGTGAGTTCTGGGGGTGAACATAATGACAATTTTACCGCAACCCCCCGAAAGACAAG.....................................................................................................................................................................ATTGCAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745956" ref_strand="+" ref_description="SGN-E745956 [GI|47105446]">
      <seq>gactgaaaaaaaaccctaaatcagttcgacaaaatttttcagatcgaactgagaaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgttgtgagaaaagaagatcccgtctttagagtgttaactactgaggaaatcgacgagcacttaacagccatcagtgagcgtgactgattagccacatgatacacagtccgttttctgttagaaatgtatgttttgctatcaagacttgcaaaagagatcccatttgattgttagttgctatcaatccttctgcatatgctgataaatgagtttctatttgtcgaatgtaacatttcatgggatcttcttagtttcaacaaaacgtttgaatccttctatcattatctatctacgatcttttgtacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93506" stop="98503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93805" g_stop="93956" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="248" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="330" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="427" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="486" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="569" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="665" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="725" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97893" g_stop="98199" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="1032" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1035" polyA_stop="1053"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E745956" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1031</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93805" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
          <exon e_start="97893" e_stop="98199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTG-AAAAAAACCCTAAATCAGTTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCTATCTACGATCTTTT</genome_strand>
        <mrna_strand>GACTGAAAAAAAACCCTAAATCAGTTCGACAAAATTTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCTATCTACGATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725087" ref_strand="+" ref_description="SGN-E725087 [FC26AB04]">
      <seq>aatcggccgaattggaaaaaaaccctaaatcagttcgacaaaaattttcagatcgaactgagaaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcaaaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgttgtgagaaaagaagatcccgtctttagagtgttaactactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93506" stop="98242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93808" g_stop="93956" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="162" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="257" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="339" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="436" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="495" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="578" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="674" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="734" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97893" g_stop="97942" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="784" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E725087" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93808" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
          <exon e_start="97893" e_stop="97942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAAAACCCTAAATCAGTTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGA</genome_strand>
        <mrna_strand>GGAAAAAAACCCTAAATCAGTTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAAAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698689" ref_strand="+" ref_description="SGN-E698689 [FA07BB03]">
      <seq>cccgttaaatcagttcgacaaaaattttcagatcgaactgagaaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttccaggccagtgaaattgaggttggtgttgtgagaaaagaagatcccgtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93520" stop="98225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93815" g_stop="93956" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="237" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="319" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="416" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="475" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="558" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="654" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="714" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97893" g_stop="97925" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="747" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E698689" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93815" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
          <exon e_start="97893" e_stop="97925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAAATCAGTTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTT</genome_strand>
        <mrna_strand>CCCGTTAAATCAGTTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCCAGGCCAGTGAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319562" ref_strand="+" ref_description="SGN-E319562 [cTOB-15-P11]">
      <seq>ctaaatcagttcgacaaaaattttcagatcgaactgagaaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93519" stop="96225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93819" g_stop="93956" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="233" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="315" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="412" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95925" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="455" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E319562" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93819" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATCAGTTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATG</genome_strand>
        <mrna_strand>CTAAATCAGTTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702323" ref_strand="+" ref_description="SGN-E702323 [FA18BF05]">
      <seq>atcagttcgacaaaaattttcagatcgaactgagaaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgttgtgagaaaagaagatcccgtctttagagtgttaactactgaggaaatcgacgagcacttaacagccatcagtgagcgtgactgattagccacatgatacacagtccgttttctgttagaaatgtatgttttgctatncagacttgcaaaagagatcccatttgattgttagntgctatncatccttctgcatatgctgataaatgagtttctatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93523" stop="98419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93823" g_stop="93956" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="229" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="311" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="408" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="467" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="550" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="646" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="706" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97893" g_stop="98119" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="933" r_length="227" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E702323" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>933</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93823" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
          <exon e_start="97893" e_stop="98119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGTTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGT</genome_strand>
        <mrna_strand>ATCAGTTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATNCAGACTTGCAAAAGAGATCCCATTTGATTGTTAGNTGCTATNCATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697723" ref_strand="+" ref_description="SGN-E697723 [FA03DH01]">
      <seq>gttcgacaaaaattttcagatcgaactgagaaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgttgtgagaaaagaagatcccgtctttagagtgttaactactgaggaaatcgacgagcacttaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93527" stop="98265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93827" g_stop="93956" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="225" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="307" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="404" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="463" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="546" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="642" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="702" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97893" g_stop="97965" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="775" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E697723" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93827" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
          <exon e_start="97893" e_stop="97965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAG</genome_strand>
        <mrna_strand>GTTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719709" ref_strand="+" ref_description="SGN-E719709 [FC08CF10]">
      <seq>gggcgattggcggccaatcggccgaattggacaaaaattttcagatcgaactgagaaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcaaaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgttgtgagaaaagaagatcccgtctttagagtgttaactactgaggaaatcgacgagcacttaacagccatcagtgagcgtgactgattagccacatgatacacagtccgttttctgttagaaatgtatgttttgctatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93526" stop="98339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93828" g_stop="93956" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="155" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="250" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="332" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="429" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="488" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="571" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="667" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="727" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97893" g_stop="98039" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="874" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E719709" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93828" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
          <exon e_start="97893" e_stop="98039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCA</genome_strand>
        <mrna_strand>TTGGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAAAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264178" ref_strand="+" ref_description="SGN-E264178 [cLEG-64-F12]">
      <seq>ttcgacaaaaattttcagatcgaactgagaaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgttgtgagaaaaagagatcccgtctttagaggttaactactgaggaaatcgacgagcacttaacagccatcagtgagcgtgactgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93528" stop="98287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93828" g_stop="93956" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="224" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="306" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="403" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="462" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="545" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="640" r_length="95" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="700" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97893" g_stop="97987" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="794" r_length="94" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E264178" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93828" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
          <exon e_start="97893" e_stop="97987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATT</genome_strand>
        <mrna_strand>TTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAG-AAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAGAAAAAGAGATCCCGTCTTTAGAG-GTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709861" ref_strand="+" ref_description="SGN-E709861 [FA53BH09]">
      <seq>cccgcttttcgacaaaaattttcagatcgaactgagaaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgttgtgagaaaagaagatcccgtcttttaagtgttaactactgaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93528" stop="98246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93828" g_stop="93926" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="106" r_length="99" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93927" i_stop="94103" i_length="177">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="201" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="283" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="380" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="439" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="522" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="618" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="678" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97893" g_stop="97946" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="732" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E709861" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93828" e_stop="93926"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
          <exon e_start="97893" e_stop="97946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAA</genome_strand>
        <mrna_strand>TTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCTCTTTCAAGTCG.................................................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTTAAGTGTTAACTACTGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276490" ref_strand="+" ref_description="SGN-E276490 [cLEN-17-A1]">
      <seq>ttcgacaaaaattttcagatcgaactgagaaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93528" stop="96452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93828" g_stop="93956" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="224" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="306" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="403" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="462" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96152" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="541" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E276490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93828" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCA</genome_strand>
        <mrna_strand>TTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264421" ref_strand="+" ref_description="SGN-E264421 [cLEG-67-F7]">
      <seq>ttcgacaaaaattttcagatcgaactgagaaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacnagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93528" stop="96395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93828" g_stop="93956" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="224" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="306" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="403" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="462" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96095" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="484" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E264421" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93828" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGA</genome_strand>
        <mrna_strand>TTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACNAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254438" ref_strand="+" ref_description="SGN-E254438 [cLEG-27-N17]">
      <seq>ttcgacaaaaattttcagatcgaactgagaaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93528" stop="96249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93828" g_stop="93956" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="224" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="306" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="403" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="462" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96082" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="471" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E254438" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93828" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGA</genome_strand>
        <mrna_strand>TTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260676" ref_strand="+" ref_description="SGN-E260676 [cLEG-54-K12]">
      <seq>aaaaattttcagatcgaactgagaaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgagaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgacgttggtgttgtgagatcagaagatcccggctttagagtgttaactactggaggaatcgacgagcacttaacagccatcagtgagcgtgactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93534" stop="98286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93834" g_stop="93956" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="218" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="300" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="397" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="456" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="539" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="635" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="695" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97893" g_stop="97986" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="789" r_length="94" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E260676" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93834" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
          <exon e_start="97893" e_stop="97986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGAT</genome_strand>
        <mrna_strand>AAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAGAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAC.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAGATCAGAAGATCCCGGCTTTAGAGTGTTAACTACTGGAGGAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291200" ref_strand="+" ref_description="SGN-E291200 [cLET-2-G17]">
      <seq>aaaaattttcagatcgaactgagaaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93534" stop="97234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93834" g_stop="93956" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="218" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="300" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="397" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="456" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="539" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96910" g_stop="96934" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="564" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E291200" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93834" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="96934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGC</genome_strand>
        <mrna_strand>AAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258806" ref_strand="+" ref_description="SGN-E258806 [cLEG-50-D2]">
      <seq>cagatcgaactgagattatcaaaccgtagaatcgaatatggagcccaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgctactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93543" stop="95788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93843" g_stop="93956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="209" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="291" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95488" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="365" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E258806" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93843" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATG</genome_strand>
        <mrna_strand>CAGATCGAACTGAGATTATCAAACCGTAGAATCGAATATGGAGCCCAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGCTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281357" ref_strand="-" ref_description="SGN-E281357 [cLEL-1-J22](-)">
      <seq>gcacgagatcgaactgagaaaatctaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgccacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93544" stop="95757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93846" g_stop="93956" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="118" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="213" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="295" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95457" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="338" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E281357" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281357" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93846" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGC</genome_strand>
        <mrna_strand>ATCGAACTGAGAAAATCTAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGCCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391017" ref_strand="+" ref_description="SGN-E391017 [TUS-47-H21]">
      <seq>tgagaaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93553" stop="97851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93853" g_stop="93956" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="199" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="281" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="378" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="437" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="520" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="616" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="676" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E391017" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93853" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG</genome_strand>
        <mrna_strand>TGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698191" ref_strand="+" ref_description="SGN-E698191 [FA05CB11]">
      <seq>gaaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgttgtgagaaaagaagatcccgtctttagagtgttaactactgaggaaatcgacgagcacttaacagccatcagtgagcgtgactgattagccacatgatacacagtccgttttctgttagaaatgtatgttttgctatcaagacttgcaaaagagatcccatttgattgttagttgctatcaatccttctgcatatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93556" stop="98399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93856" g_stop="93956" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="196" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="278" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="375" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="434" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="517" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="613" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="673" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97893" g_stop="98099" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="880" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E698191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93856" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
          <exon e_start="97893" e_stop="98099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTG</genome_strand>
        <mrna_strand>GAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698275" ref_strand="+" ref_description="SGN-E698275 [FA05DB11]">
      <seq>gaatatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgttgtgagaaaagaagatcccgtctttagagtgttacctactgaggaaatcgacgagcacttaacagccatcagtgagcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93556" stop="98280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93856" g_stop="93956" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="196" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="278" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="375" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="434" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="517" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="613" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="673" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97893" g_stop="97980" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="761" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E698275" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93856" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
          <exon e_start="97893" e_stop="97980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTG</genome_strand>
        <mrna_strand>GAATATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTACCTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260163" ref_strand="+" ref_description="SGN-E260163 [cLEG-52-D13]">
      <seq>aaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93557" stop="96448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93857" g_stop="93956" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="195" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="277" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="374" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="433" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96148" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="508" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E260163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93857" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTG</genome_strand>
        <mrna_strand>AAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259064" ref_strand="+" ref_description="SGN-E259064 [cLEG-41-G14]">
      <seq>aaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93557" stop="95815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93857" g_stop="93956" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="195" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="277" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="374" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E259064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93857" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG</genome_strand>
        <mrna_strand>AAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283338" ref_strand="+" ref_description="SGN-E283338 [cLER-12-A15]">
      <seq>caaaccgtagaatcgaacaatgagtcgaggaagtggaggcggataccatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93562" stop="96396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93862" g_stop="93956" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="190" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="272" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="369" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="428" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96096" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="451" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E283338" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93862" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGAT</genome_strand>
        <mrna_strand>CAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACCATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282273" ref_strand="+" ref_description="SGN-E282273 [cLES-4-O24]">
      <seq>agaatcgaacaatgagtcgaggaaggggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgcggaaaggactctgtttgtgttgttactcacaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93570" stop="96403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93870" g_stop="93956" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="182" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="264" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="361" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="420" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96103" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="450" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E282273" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93870" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGA</genome_strand>
        <mrna_strand>AGAATCGAACAATGAGTCGAGGAAGGGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGCGGAAAGGACTCTGTTTGTGTTGTTACTCACAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313863" ref_strand="+" ref_description="SGN-E313863 [cTOA-17-D23]">
      <seq>gaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaggaggcaattaactttttggagaagaaaatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93571" stop="97270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93871" g_stop="93956" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="181" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="263" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="360" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="419" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="502" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96910" g_stop="96970" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="563" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E313863" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93871" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="96970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAA</genome_strand>
        <mrna_strand>GAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAGGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698832" ref_strand="+" ref_description="SGN-E698832 [FA07DA02]">
      <seq>aatccaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgcggaaaggactctgtttgtgttgttactcacaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaactcccaggtttacacacagcatgcctatatgagaccccttggactagttgctatgattttgggcattgatgacgagaaagggccccccctcttcaaatgtgaccctgctggtcatttttttggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93572" stop="96451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93872" g_stop="93956" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="180" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="262" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="359" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="418" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96151" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="496" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E698832" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93872" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTC</genome_strand>
        <mrna_strand>AATCCAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGCGGAAAGGACTCTGTTTGTGTTGTTACTCACAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAACTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGACTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGACGAGAAAGGGCCCCCCCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698855" ref_strand="+" ref_description="SGN-E698855 [FA07DC02]">
      <seq>cgaacaatgccttaaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgacccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttccatctgttctgcaagaagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93575" stop="97830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93875" g_stop="93956" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="177" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="259" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="356" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="415" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="499" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="595" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97490" g_stop="97530" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="636" r_length="41" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E698855" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93875" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGA-CCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTT</genome_strand>
        <mrna_strand>CGAACAATGCCTTAAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCCATCTGTTCTGCAAGAAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718690" ref_strand="+" ref_description="SGN-E718690 [FC05BH09]">
      <seq>aggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcaaatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="93598" stop="97851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93898" g_stop="93956" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94104" g_stop="94198" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="154" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94868" g_stop="94949" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="236" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="333" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="392" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="475" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="571" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="631" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E718690" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93898" e_stop="93956"/>
          <exon e_start="94104" e_stop="94198"/>
          <exon e_start="94868" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG</genome_strand>
        <mrna_strand>AGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAAATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391016" ref_strand="+" ref_description="SGN-E391016 [TUS-47-H21](-)">
      <seq>tggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgttgtgagaaaagaagatcccgtctttagagtgttaactactgaggaaatcgacgagcacttaacagccatcagtgagcgtgactgattagccacatgatacacagtccgttttctgttagaaatgtatgttttgctatcaagacttgcaaaagagatcccatttgattgttagttgctatcaatccttctgcatatgctgataaatgagtttctatttgtcgaatgtaacatttcatgggatcttcttagtttcaacaaaacgtttgaatccttctatcattatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="94578" stop="98486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94878" g_stop="94949" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="169" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="228" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="311" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="407" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="467" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97893" g_stop="98185" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="760" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="761" polyA_stop="771"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E391016" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94878" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
          <exon e_start="97893" e_stop="98185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCT</genome_strand>
        <mrna_strand>TGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250717" ref_strand="+" ref_description="SGN-E250717 [cLEG-7-I10]">
      <seq>tggatcaaaccattgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgttgtgagaaaagaagatcccgtctttagagtgttaactactgaggaaatcgacgagcacttaacagccatcagtgagcgtgactgattagccacatgatacacagtccgttttctgttagaaatgtatgttttgctatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="94578" stop="98339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94878" g_stop="94949" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="169" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="228" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="311" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="407" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="467" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97893" g_stop="98039" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="614" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E250717" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94878" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
          <exon e_start="97893" e_stop="98039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCA</genome_strand>
        <mrna_strand>TGGATCAAACCATTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327046" ref_strand="+" ref_description="SGN-E327046 [cTOC-18-H17]">
      <seq>aattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgttgtgagaaaagaagatcccgtctttagagtgttaactactgaggaaatcgacgagcacttaacagccatcagtgagcgtgactgattagccacatgatacacagtccgttttctgttagaaatgtatgttttgctatcaagacttgcaaaagagatcccatttgattgttagttgctatcaatccttctgcatatgctgataaatgangttctatttgtcgaatgtaacatttcatgggatcttcnntagttcaacaaaacgtttgaatccttctatcnatatctatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="94609" stop="98490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94909" g_stop="94949" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="138" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="197" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="280" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="376" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="436" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97893" g_stop="98190" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="734" r_length="298" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E327046" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94909" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
          <exon e_start="97893" e_stop="98190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCTATCTA</genome_strand>
        <mrna_strand>AATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGANGTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCNNTAGTTCAACAAAACGTTTGAATCCTTCTATCNATATCTATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327804" ref_strand="+" ref_description="SGN-E327804 [cTOC-20-P1]">
      <seq>aattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgttgtgagaanagaagatcccgtctttagagtgttaactactgaggaaatcgacgagcacttaacagccatcagtgagcgtgactgattagccacatgatacacaggccgttttctgttagaaatgtatgttttgctatcaagacttgcaaaagagatcccatctgattgatagttgctatgcatccctctgcatatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="94609" stop="98399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94909" g_stop="94949" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95415" g_stop="95511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="138" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="197" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="280" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="376" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="436" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97893" g_stop="98099" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="643" r_length="207" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E327804" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94909" e_stop="94949"/>
          <exon e_start="95415" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
          <exon e_start="97893" e_stop="98099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTG</genome_strand>
        <mrna_strand>AATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAGAANAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGGCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATCTGATTGATAGTTGCTATGCATCCCTCTGCATATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286224" ref_strand="+" ref_description="SGN-E286224 [cLES-11-I14]">
      <seq>ccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgttgtgagaaaagaagatcccgtctttagagtgttaactactgaggaaatcgacgagcacttaacagccatcagtgagcgtgactgattagccacatgatacacagtccgttttctgttagaaatgtatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="95189" stop="98330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95489" g_stop="95511" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95883" g_stop="95941" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="82" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96074" g_stop="96156" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="165" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96910" g_stop="97005" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="261" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97490" g_stop="97549" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="321" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97893" g_stop="98030" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="459" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E286224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95489" e_stop="95511"/>
          <exon e_start="95883" e_stop="95941"/>
          <exon e_start="96074" e_stop="96156"/>
          <exon e_start="96910" e_stop="97005"/>
          <exon e_start="97490" e_stop="97549"/>
          <exon e_start="97893" e_stop="98030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTT</genome_strand>
        <mrna_strand>CCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220603" ref_strand="+" ref_description="SGN-E220603 [cLEL-12-F24](-)">
      <seq>ttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgttgtgaaaaaagaagatcccgtctttagagtgttaactactgaggaaatcgacgagcacttaacagccatcagtgagcgtgactgattagccacatgatacacagtccgttttctgttagaaatgtatgttttgctatcaagacttgcaaaagagatcccatttgattgttagttgctatcaatccttctgcatatgctgataaatgagtttctatttgtcgaatgtaacatttcatgggatcttcttagtttcaacaaaacgtttgaatccttctatcattatctatctacgatcttttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="97185" stop="98502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97485" g_stop="97549" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97893" g_stop="98199" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="372" r_length="307" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="404"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E220603" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97485" e_stop="97549"/>
          <exon e_start="97893" e_stop="98199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCTATCTACGATCTTTT</genome_strand>
        <mrna_strand>TTCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAAAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCTATCTACGATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220471" ref_strand="+" ref_description="SGN-E220471 [cLEL-12-F24](-)">
      <seq>ggttggtgttgtaagaaaaaaagatcccgtctttagagtgttaactactgaggaaatcgacgagcacttaacagccatcagtgagcgtgactgattagccacatgatacacagtccgttttctgttagaaatgtatgttttgctatcaagacttgcaaaagagatcccatttgattgttagttgctatcaatccttctgcatatgctgataaatgagtttctatttgtcgaatgtaacatttcatgggatcttcttagtttcaacaaaacgtttgaatccttctatcattatctatctacgatcttttgtaaaaaaaaaaaaccaaccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="+" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="97592" stop="98502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97892" g_stop="98199" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="311" polyA_stop="323"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="+" ref_id="SGN-E220471" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97892" e_stop="98199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCTATCTACGATCTTTT</genome_strand>
        <mrna_strand>GGTTGGTGTTGTAAGAAAAAAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCTATCTACGATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550240" ref_strand="+" ref_description="SGN-E550240 [TUS-5-N18](-)">
      <seq>aaatatattctctctcatatttatcttttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatcttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtatttataggattttttagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="100524" stop="99333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100224" g_stop="99673" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E550240" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100224" e_stop="99673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTTTCTCTCTCATTGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGTCATATATTTTGGTTGTTTTTTTAATCCAAAATTGAATCAACCAGAATTCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATATTAAAAAAATATTGTTTATATTTTTCAATTTCCGTTATGATTTACTCTCCAATTGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATTCTTTAATTTATTTATTACTCAACAAATAGTGTATAATGTATGATTCGCTGCTAAAAAGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTTCTCAAATTCAGAACGCAAATGTAAAATCTTTGTTTACTCGTGAGGATCTTGAAAAGGACGACGAAGATCGGATA</genome_strand>
        <mrna_strand>AAATAT-ATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAAT-TTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATCGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389671" ref_strand="+" ref_description="SGN-E389671 [TUS-4-N18](-)">
      <seq>tttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatgttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="100497" stop="99375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100197" g_stop="99673" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E389671" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100197" e_stop="99673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTTTCTCTCTCATTGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGTCATATATTTTGGTTGTTTTTTTAATCCAAAATTGAATCAACCAGAATTCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATATTAAAAAAATATTGTTTATATTTTTCAATTTCCGTTATGATTTACTCTCCAATTGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATTCTTTAATTTATTTATTACTCAACAAATAGTGTATAATGTATGATTCGCTGCTAAAAAGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTTCTCAAATTCAGAACGCAAATGTAAAATCTTTGTTTACTCGTGAGGATCTTGAAAAGGACGACGAAGATCGGATA</genome_strand>
        <mrna_strand>TTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAAT-TTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATGTTGAAAAAGACGACGAAGATCGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222129" ref_strand="+" ref_description="SGN-E222129 [cLEL-36-I24](-)">
      <seq>ttccacttccattgcattagcaggtggctcaagactcgtcaagtgtgtccacttgataacagcgagtgggagtttcagaagtatggtcactagaatttactgttggtgtacagtgaatgagaggagcttcaaaactatggtcattacagtttttctgtcatcgacgttgaaaagaacaattctgctgccttatgttcctttcgtttttgctctgcaaatatccaaagcaatgactcgaactatgtttttaagtgtcgcatgtctgttttaggttgcctcaaaagaatgaaatgtgtttggagactaaccatttcttactcgaatttacatattttctttgttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="106189" stop="70381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105889" g_stop="105835" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105834" i_stop="105752" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105751" g_stop="105460" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="347" r_length="292" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105459" i_stop="104938" i_length="522">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.717" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104937" g_stop="104924" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="361" r_length="14" r_score="0.786"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E222129" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105889" e_stop="105835"/>
          <exon e_start="105751" e_stop="105460"/>
          <exon e_start="104937" e_stop="104924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTGGTAAGTTGTATATATATTGCCGTCTCTGCATACATAAGCTGTCATTGTACATTACCTGCTAATTAAGTACAACACACTTTCAGATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCGAATTTACATATTTTCTTTGTTCTTCAGTGTTCATTACTATTTGTTGCTCTATTTATTTTGTATCGTGTTTTTTGCTGTCCTATTTTCGTTTAATTGTTTTTCAAATTCTACTTTTCTTGTGAGCCAAGGGTCTATTGATAACAACCTCTAAGGTTGATTGGTTATTTATGATTTTAAATTTTGACTTCGCCTATAGAAAAACACTTGTGAAATAGGCTTTTTTTTCTTTTTAGTGATAGTAACACCATTTTTTGTAAATGACTTTAAAGGTCATGTGTATATTGACAGATGCCCAAAGGTATTATAAATACAATCTTCTTTGCCTCCCGGGTTATTGATTATCGAATTTCGAACCTTTTCGTTTGTATGTAAAAAAGTAAAATATAATTTATTATGTATCAAATTATAAATATTTCATTGGTTCATAAAAATAAATACGAAAGTAATCAAAGTATTGAGAACACGATGATAAAAATAACTTTGATAAGGACTAACATTGAAAGATGGTCATATTAAAGTTTACGACTTATTTTATGATAAAATTGAAGATAAAAAGAAAAGA</genome_strand>
        <mrna_strand>TTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTG...................................................................................ATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAAGTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTACTCGAATTTACATATTTTCTTTGTTAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541085" ref_strand="+" ref_description="SGN-E541085 [TUS-61-L3]">
      <seq>ataattttgaaaaatctgtgaactcttcgaagcttaaaaattcaatggcgtcaccggataccgatgtgccgatggttcccgccggcgagagttcaaccggagctggaacgtctaacaaaaagccgaagcgatttgagatcaaaaagtggaacgccgtttctctctgggcttgggatattgtggtagataattgtgccatctgtaggaatcacatcatggatctgtgtatcgagtgtcaagctaatcaagctagcgcaacaagtgaggaatgcacagttgcttggggtgtttgcaaccatgcattccacttccattgcattagcaggtggctcaagactcgtcaagtgtgtccacttgataacagcgagtgggagtttcagaagtatggtcactagaatttactgttggtgtacagtgaatgagaggagcttcaaaactatggtcattacagtttttctgtcatcgacgttgaaaagaacaattctgctgccttatgttcctttcgtttttgctctgcaaatatccaaagcaatgactcgaactatgtttttaattgtcgcatgtctgttttaggttgcctcaaaagaatgaaatgtgtttggagactaaccatttcttattcgaatttacatattttctttgttcttcagtgttcattactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="108819" stop="105147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108695" g_stop="108522" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108521" i_stop="107680" i_length="842">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107679" g_stop="107629" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="225" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107628" i_stop="107507" i_length="122">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107506" g_stop="107447" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="285" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107446" i_stop="105907" i_length="1540">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105906" g_stop="105835" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="357" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105834" i_stop="105752" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105751" g_stop="105448" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="661" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="662" polyA_stop="671"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E541085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108695" e_stop="108522"/>
          <exon e_start="107679" e_stop="107629"/>
          <exon e_start="107506" e_stop="107447"/>
          <exon e_start="105906" e_stop="105835"/>
          <exon e_start="105751" e_stop="105448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTTTGAAAAATCTGTGAACTCTTCGAAGCTTAAAAATTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGGGTGAATTTCTAACCCTAATTAATTCCATCGTATTTTATATACGTATTTATTGATGTAGATTTAACGATTTTATGCTGGATTTAAAGTAATGGAATCCGGTGATCTATTTAGATTTTAAATCAGTGATTGCGAAGTACTATTGCTAGTTTTTGCTGATGATGTTGTGAACTTAGTGCAAGTGTACGTTTAGGAACTTTATAGTTCGAATGTATGTATGTACGTTTTTCAAGGCAAAGGTAGTGAATATTCCTACGCTCGCTGCTGAAAAATTGGATGTATGATGGATGATTGTATGGAATTTGATTTGTAAACAGCAGCACTATGTGTATTGGCTTACGTGAAATTAGTAGTGAATGTCAGTCCAAAAATATGAAGTTTGTGTAATGTACTAATGGTAATATTGTTTTGTTACCTGAGCTTGTAGTTGATATCCGTGAATCGGAATTAGAAAGGAATATTGACTGGAAGATGCTTACAGCAATTTGAAGTTATTTGTATCTTCTTTTAGGAGGTGGTTTGATCATAGATGTTGACGATTTATCATCTATCTTTTAAGTTTGATCGTGTTCAATGTACTGTTCTCTTTGTAGTACTTATTGTTACTTCTATAAATAAAAATTGTTACATCTTATGTTACTATTTATGGTTTACATTCAAATATATTATGATGTATGAGCAGTTCTGTACTTCCATGATTTTGTGTTGCACATAATATACAATTATTGTATTTGTTTTGTTTGGTGTGAATTTGATTTTCTTCAACATGCTCATTGTCCGAATTGCGTTGGAGTGATCTTTCTGATTCTTTTTATCAATCTTGTGAATTGTGATTTTGGTTGCAGATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGTGTGAGTTTTGGCTCTCCTTTCACTACTGTTCAATCAATGTTTCCTTTTCTTTGGTATGATATCATCATGAAATCTTTTATCCTCTTAATAGTTGATTTAAGTTGTATGCTAATTTTGATTAGGTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGGGTATGTAGCTCTTGTTATGTGTGAGAATATCGATTTAACATTTTAGTTTGTTAATTTGCGGTGAGTTCCAAATATTGTATGACTAGTATCTTATATCTCCTCCCACTGTATCTTGCCTTATGATCTATCAACCAACAGAATGACCCACAGACGCTCCTATGCATTGCAAATCCTCCTTATTAACCATGAAACTAAGTGAATAGGAAACTACCAATATCAGTATATTACTAAAGTAAGGATGAAGTAGGAAGTCATGTAGTTACTGGGGAAAAAACGAAGAAAGCTCCTTTTTTTTTCTGAGAAAGGAAAAAAAATATTTATGTTTCGTTTTGTTTTAGCAGTTTTTTTTTTGCCAGGAGTGTACTTTCTTTTGATGCTTAGAATAATAATGAAAATGTTCTGTTTCTTCTTTTGATCCTCAATACAAAACAAAAAACCTTTTTGTGGTCACGTTTTCGAGAAAACCCCTCTTTTCTTTTTTGAGAATATTGCTTTCCTCGGATTTTGTTATTGGGGATGGTCATGTTGAAGGTTGCTGAAGAAATAGATAACTTGGAGCCATTCCATTGTGTATGAAGTACCGTAGTACTGAGTTAGCACTTTTCTGGAGCATAGGATTACAAGCTTGAGAAATTGTTCTTTCCATTCTTGAAATGAGAGTGCTCTTTGTATGAGTACGGTGTTCTCGTGCTGTATTTTCTAATTTAAGTCAGTGATTATGTCTGTTTTAAATTGGTTTTACTCGTTAGTTATCACCATATGGTAGGAAAATAACCTCCCTCCTGCAATTTGGTCAAAATTGAAATTGTGGTAGCTTGAGATATGCAAGCCATGTGTTGATGGTATTGAACTTACATCATCTAGCTGGTCACCCACTCGTATGATTCCATGTTAACAACCATGTTAAACTTTTCCTTGAGTTTCGGCGACATACCAGATATAATTGTAGTAAAAAAACCAAAATATTAATTCTGCAATTAGATTATTGTGTTATAGTGAAGTCTGGTGGCTGGAATGTCTTCTATAATTGTGTTATAGTGTTGCTACTATTTGTAGAATAAGATGTTAATCAGTAGAGGTGCAAACTGATAAGGCATTAGTCACAAAAAGTTAGAGGATCTTCATGCCTCTCCTCAAGACTTTTGTTGTAGCTAGTGTTAAGTTTATATTGTGGTAAATGTTACATTGGATTTGCTCCAACTCTCGTGCACATGTCTTTCAATCTTTGACAATTGGTAATTGTCATTACTTGAGCTTGTTATTTGCCTTCTAAGCTGGTATCAGATTTGTGCCCATAAAATATTGTGGCATCCTTCCGCAAGAATTCTGGAAGATAACAAATAAGATACTCTTGACAAGGTACAGAGTGTCAAATAGTCCTCTGTGAAAAATCTACATTTTCTATTAACTGTATGAAATTAATGTTGGCGTAAACGTTACTCTACACTCACTAAACCTGTTTACGCCATTTTGGATATGGATTGCCATCTGTTATTCATCGGAAGGTCATTTTTTTTGCCATAACTGTTGATCATTGCAGGTGTTTGCAACCATGCATTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTGGTAAGTTGTATATATATTGCCGTCTCTGCATACATAAGCTGTCATTGTACATTACCTGCTAATTAAGTACAACACACTTTCAGATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCGAATTTACATATTTTCTTTGTTCTTCAGTGTTCATTACT</genome_strand>
        <mrna_strand>ATAATTTTGAAAAATCTGTGAACTCTTCGAAGCTTAAAAATTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGT..........................................................................................................................GTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGCAACCATGCATTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTG...................................................................................ATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCGAATTTACATATTTTCTTTGTTCTTCAGTGTTCATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349073" ref_strand="+" ref_description="SGN-E349073 [cTOS-2-I10]">
      <seq>aagccgaagcgatttgagatcaaaaagtggaacgccgtttctctctgggcttgggatattgtggtagataattgtgccatctgtaggaatcacatcatggatctgtgtatcgagtgtcaagctaatcaagctagcgcaacaagtgaggaatgcacagttgcttggggtgtttgcaaccatgcattccacttccattgcattagcaggtggctcaagactcgtcaagtgtgtccacttgataacagcgagtgggagtttcagaagtatggtcactagaatttactgttggtgtacagtgaatgagaggagcttcaaaactatggtcattacagtttttctgtcatcgacgttgaaaagaacaattctgctgccttatgttcctttcgtttttgctctgcaaatatccaaagcaatgactcgaactatgtttttaattgtcgcatgtctgttttaaggtgcctccaaagaatgaaatgtgtttggagactaaccatttcttattccaatatacatattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="108819" stop="105170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108576" g_stop="108522" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108521" i_stop="107680" i_length="842">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107679" g_stop="107629" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="106" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107628" i_stop="107507" i_length="122">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107506" g_stop="107447" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="166" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107446" i_stop="105907" i_length="1540">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105906" g_stop="105835" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="238" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105834" i_stop="105752" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105751" g_stop="105470" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="520" r_length="282" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E349073" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108576" e_stop="108522"/>
          <exon e_start="107679" e_stop="107629"/>
          <exon e_start="107506" e_stop="107447"/>
          <exon e_start="105906" e_stop="105835"/>
          <exon e_start="105751" e_stop="105470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGGGTGAATTTCTAACCCTAATTAATTCCATCGTATTTTATATACGTATTTATTGATGTAGATTTAACGATTTTATGCTGGATTTAAAGTAATGGAATCCGGTGATCTATTTAGATTTTAAATCAGTGATTGCGAAGTACTATTGCTAGTTTTTGCTGATGATGTTGTGAACTTAGTGCAAGTGTACGTTTAGGAACTTTATAGTTCGAATGTATGTATGTACGTTTTTCAAGGCAAAGGTAGTGAATATTCCTACGCTCGCTGCTGAAAAATTGGATGTATGATGGATGATTGTATGGAATTTGATTTGTAAACAGCAGCACTATGTGTATTGGCTTACGTGAAATTAGTAGTGAATGTCAGTCCAAAAATATGAAGTTTGTGTAATGTACTAATGGTAATATTGTTTTGTTACCTGAGCTTGTAGTTGATATCCGTGAATCGGAATTAGAAAGGAATATTGACTGGAAGATGCTTACAGCAATTTGAAGTTATTTGTATCTTCTTTTAGGAGGTGGTTTGATCATAGATGTTGACGATTTATCATCTATCTTTTAAGTTTGATCGTGTTCAATGTACTGTTCTCTTTGTAGTACTTATTGTTACTTCTATAAATAAAAATTGTTACATCTTATGTTACTATTTATGGTTTACATTCAAATATATTATGATGTATGAGCAGTTCTGTACTTCCATGATTTTGTGTTGCACATAATATACAATTATTGTATTTGTTTTGTTTGGTGTGAATTTGATTTTCTTCAACATGCTCATTGTCCGAATTGCGTTGGAGTGATCTTTCTGATTCTTTTTATCAATCTTGTGAATTGTGATTTTGGTTGCAGATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGTGTGAGTTTTGGCTCTCCTTTCACTACTGTTCAATCAATGTTTCCTTTTCTTTGGTATGATATCATCATGAAATCTTTTATCCTCTTAATAGTTGATTTAAGTTGTATGCTAATTTTGATTAGGTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGGGTATGTAGCTCTTGTTATGTGTGAGAATATCGATTTAACATTTTAGTTTGTTAATTTGCGGTGAGTTCCAAATATTGTATGACTAGTATCTTATATCTCCTCCCACTGTATCTTGCCTTATGATCTATCAACCAACAGAATGACCCACAGACGCTCCTATGCATTGCAAATCCTCCTTATTAACCATGAAACTAAGTGAATAGGAAACTACCAATATCAGTATATTACTAAAGTAAGGATGAAGTAGGAAGTCATGTAGTTACTGGGGAAAAAACGAAGAAAGCTCCTTTTTTTTTCTGAGAAAGGAAAAAAAATATTTATGTTTCGTTTTGTTTTAGCAGTTTTTTTTTTGCCAGGAGTGTACTTTCTTTTGATGCTTAGAATAATAATGAAAATGTTCTGTTTCTTCTTTTGATCCTCAATACAAAACAAAAAACCTTTTTGTGGTCACGTTTTCGAGAAAACCCCTCTTTTCTTTTTTGAGAATATTGCTTTCCTCGGATTTTGTTATTGGGGATGGTCATGTTGAAGGTTGCTGAAGAAATAGATAACTTGGAGCCATTCCATTGTGTATGAAGTACCGTAGTACTGAGTTAGCACTTTTCTGGAGCATAGGATTACAAGCTTGAGAAATTGTTCTTTCCATTCTTGAAATGAGAGTGCTCTTTGTATGAGTACGGTGTTCTCGTGCTGTATTTTCTAATTTAAGTCAGTGATTATGTCTGTTTTAAATTGGTTTTACTCGTTAGTTATCACCATATGGTAGGAAAATAACCTCCCTCCTGCAATTTGGTCAAAATTGAAATTGTGGTAGCTTGAGATATGCAAGCCATGTGTTGATGGTATTGAACTTACATCATCTAGCTGGTCACCCACTCGTATGATTCCATGTTAACAACCATGTTAAACTTTTCCTTGAGTTTCGGCGACATACCAGATATAATTGTAGTAAAAAAACCAAAATATTAATTCTGCAATTAGATTATTGTGTTATAGTGAAGTCTGGTGGCTGGAATGTCTTCTATAATTGTGTTATAGTGTTGCTACTATTTGTAGAATAAGATGTTAATCAGTAGAGGTGCAAACTGATAAGGCATTAGTCACAAAAAGTTAGAGGATCTTCATGCCTCTCCTCAAGACTTTTGTTGTAGCTAGTGTTAAGTTTATATTGTGGTAAATGTTACATTGGATTTGCTCCAACTCTCGTGCACATGTCTTTCAATCTTTGACAATTGGTAATTGTCATTACTTGAGCTTGTTATTTGCCTTCTAAGCTGGTATCAGATTTGTGCCCATAAAATATTGTGGCATCCTTCCGCAAGAATTCTGGAAGATAACAAATAAGATACTCTTGACAAGGTACAGAGTGTCAAATAGTCCTCTGTGAAAAATCTACATTTTCTATTAACTGTATGAAATTAATGTTGGCGTAAACGTTACTCTACACTCACTAAACCTGTTTACGCCATTTTGGATATGGATTGCCATCTGTTATTCATCGGAAGGTCATTTTTTTTGCCATAACTGTTGATCATTGCAGGTGTTTGCAACCATGCATTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTGGTAAGTTGTATATATATTGCCGTCTCTGCATACATAAGCTGTCATTGTACATTACCTGCTAATTAAGTACAACACACTTTCAGATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCGAATTTACATATTTTCT</genome_strand>
        <mrna_strand>AAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGT..........................................................................................................................GTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGCAACCATGCATTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTG...................................................................................ATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAAGGTGCCTCCAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCCAATATACATATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713837" ref_strand="+" ref_description="SGN-E713837 [FB09DB10]">
      <seq>cgatatagttttgaaaaatctgtgaactcttcgaagcttaaccttcaatggcgtcaccggataccgatgtgccgatggttcccgccggcgagagttcaaccggagctggaacgtctaacaaaaagccgaagcgatttgagatcaaaaagtggaacgccgtttctctctgggcttgggatattgtggtagataattgtgccatctgtaggaatcacatcatggatctgtgtatcgagtgtcaagctaatcaagctagcgcaacaagtgaggaatgcacagttgcttggggtggctcaagactcgtcaagtgtgtccacttgataacagcgagtgggagtttcagaagtatggtcactagaatttactgttggtgtacagtgaatgagaggagcttcaaaactatggtcattacagtttttctgtcatcgacgttgaaaagaacaattctgctgccttatgttcctttcgtttttgctctgcaaatatccaaagcaatgactcgaactatgtttttaattgtcgcatgtctgttttaggttgcctcaaaagaatgaaatgtgtttggagactaaccatttcttattcgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="108819" stop="105184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108699" g_stop="108522" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108521" i_stop="107680" i_length="842">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107679" g_stop="107629" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="228" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107628" i_stop="107507" i_length="122">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107506" g_stop="107447" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="288" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107446" i_stop="105867" i_length="1580">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105866" g_stop="105835" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="320" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105834" i_stop="105752" i_length="83">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105751" g_stop="105485" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="587" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="588" polyA_stop="601"/>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E713837" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108699" e_stop="108522"/>
          <exon e_start="107679" e_stop="107629"/>
          <exon e_start="107506" e_stop="107447"/>
          <exon e_start="105866" e_stop="105835"/>
          <exon e_start="105751" e_stop="105485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATAATTTTGAAAAATCTGTGAACTCTTCGAAGCTTAAAAATTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGGGTGAATTTCTAACCCTAATTAATTCCATCGTATTTTATATACGTATTTATTGATGTAGATTTAACGATTTTATGCTGGATTTAAAGTAATGGAATCCGGTGATCTATTTAGATTTTAAATCAGTGATTGCGAAGTACTATTGCTAGTTTTTGCTGATGATGTTGTGAACTTAGTGCAAGTGTACGTTTAGGAACTTTATAGTTCGAATGTATGTATGTACGTTTTTCAAGGCAAAGGTAGTGAATATTCCTACGCTCGCTGCTGAAAAATTGGATGTATGATGGATGATTGTATGGAATTTGATTTGTAAACAGCAGCACTATGTGTATTGGCTTACGTGAAATTAGTAGTGAATGTCAGTCCAAAAATATGAAGTTTGTGTAATGTACTAATGGTAATATTGTTTTGTTACCTGAGCTTGTAGTTGATATCCGTGAATCGGAATTAGAAAGGAATATTGACTGGAAGATGCTTACAGCAATTTGAAGTTATTTGTATCTTCTTTTAGGAGGTGGTTTGATCATAGATGTTGACGATTTATCATCTATCTTTTAAGTTTGATCGTGTTCAATGTACTGTTCTCTTTGTAGTACTTATTGTTACTTCTATAAATAAAAATTGTTACATCTTATGTTACTATTTATGGTTTACATTCAAATATATTATGATGTATGAGCAGTTCTGTACTTCCATGATTTTGTGTTGCACATAATATACAATTATTGTATTTGTTTTGTTTGGTGTGAATTTGATTTTCTTCAACATGCTCATTGTCCGAATTGCGTTGGAGTGATCTTTCTGATTCTTTTTATCAATCTTGTGAATTGTGATTTTGGTTGCAGATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGTGTGAGTTTTGGCTCTCCTTTCACTACTGTTCAATCAATGTTTCCTTTTCTTTGGTATGATATCATCATGAAATCTTTTATCCTCTTAATAGTTGATTTAAGTTGTATGCTAATTTTGATTAGGTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGGGTATGTAGCTCTTGTTATGTGTGAGAATATCGATTTAACATTTTAGTTTGTTAATTTGCGGTGAGTTCCAAATATTGTATGACTAGTATCTTATATCTCCTCCCACTGTATCTTGCCTTATGATCTATCAACCAACAGAATGACCCACAGACGCTCCTATGCATTGCAAATCCTCCTTATTAACCATGAAACTAAGTGAATAGGAAACTACCAATATCAGTATATTACTAAAGTAAGGATGAAGTAGGAAGTCATGTAGTTACTGGGGAAAAAACGAAGAAAGCTCCTTTTTTTTTCTGAGAAAGGAAAAAAAATATTTATGTTTCGTTTTGTTTTAGCAGTTTTTTTTTTGCCAGGAGTGTACTTTCTTTTGATGCTTAGAATAATAATGAAAATGTTCTGTTTCTTCTTTTGATCCTCAATACAAAACAAAAAACCTTTTTGTGGTCACGTTTTCGAGAAAACCCCTCTTTTCTTTTTTGAGAATATTGCTTTCCTCGGATTTTGTTATTGGGGATGGTCATGTTGAAGGTTGCTGAAGAAATAGATAACTTGGAGCCATTCCATTGTGTATGAAGTACCGTAGTACTGAGTTAGCACTTTTCTGGAGCATAGGATTACAAGCTTGAGAAATTGTTCTTTCCATTCTTGAAATGAGAGTGCTCTTTGTATGAGTACGGTGTTCTCGTGCTGTATTTTCTAATTTAAGTCAGTGATTATGTCTGTTTTAAATTGGTTTTACTCGTTAGTTATCACCATATGGTAGGAAAATAACCTCCCTCCTGCAATTTGGTCAAAATTGAAATTGTGGTAGCTTGAGATATGCAAGCCATGTGTTGATGGTATTGAACTTACATCATCTAGCTGGTCACCCACTCGTATGATTCCATGTTAACAACCATGTTAAACTTTTCCTTGAGTTTCGGCGACATACCAGATATAATTGTAGTAAAAAAACCAAAATATTAATTCTGCAATTAGATTATTGTGTTATAGTGAAGTCTGGTGGCTGGAATGTCTTCTATAATTGTGTTATAGTGTTGCTACTATTTGTAGAATAAGATGTTAATCAGTAGAGGTGCAAACTGATAAGGCATTAGTCACAAAAAGTTAGAGGATCTTCATGCCTCTCCTCAAGACTTTTGTTGTAGCTAGTGTTAAGTTTATATTGTGGTAAATGTTACATTGGATTTGCTCCAACTCTCGTGCACATGTCTTTCAATCTTTGACAATTGGTAATTGTCATTACTTGAGCTTGTTATTTGCCTTCTAAGCTGGTATCAGATTTGTGCCCATAAAATATTGTGGCATCCTTCCGCAAGAATTCTGGAAGATAACAAATAAGATACTCTTGACAAGGTACAGAGTGTCAAATAGTCCTCTGTGAAAAATCTACATTTTCTATTAACTGTATGAAATTAATGTTGGCGTAAACGTTACTCTACACTCACTAAACCTGTTTACGCCATTTTGGATATGGATTGCCATCTGTTATTCATCGGAAGGTCATTTTTTTTGCCATAACTGTTGATCATTGCAGGTGTTTGCAACCATGCATTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTGGTAAGTTGTATATATATTGCCGTCTCTGCATACATAAGCTGTCATTGTACATTACCTGCTAATTAAGTACAACACACTTTCAGATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCGA</genome_strand>
        <mrna_strand>CGATATAGTTTTGAAAAATCTGTGAACTCTTCGAAGCTT-AACCTTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGT..........................................................................................................................GTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAAGACTCGTCAAGTGTGTCCACTTG...................................................................................ATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309616" ref_strand="+" ref_description="SGN-E309616 [cLEY-26-D17]">
      <seq>ataattgtgccatctgtaggaatcacatcatggatctgtgtatcgagtgtcaagctaatcaagctagcgcaacaagtgaggaatgcacagttgcttggggtgtttgcaaccatgcattccacttccattgcattagcaggtggctcaagactcgtcaagtgtgtccacttgataacagcgagtgggagtttcagaagtatggtcactagaatttactgttggtgtacagtgaatgagaggagcttcaaaactatggtcattacagtttttctgtcatcgacgttgaaaagaacaattctgctgccttatgttcctttcgtttttgctctgcaaatatccaaagcaatgactcgaactatgtttttaattgtcgcatgtctgttttaggttgcctcaaaagaatgaaatgtgtttggagacttcataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="107967" stop="105202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107667" g_stop="107629" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107628" i_stop="107507" i_length="122">
            <donor d_prob="0.864" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107506" g_stop="107447" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="99" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107446" i_stop="105907" i_length="1540">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105906" g_stop="105835" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="171" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105834" i_stop="105752" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105751" g_stop="105502" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="421" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E309616" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107667" e_stop="107629"/>
          <exon e_start="107506" e_stop="107447"/>
          <exon e_start="105906" e_stop="105835"/>
          <exon e_start="105751" e_stop="105502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGTGTGAGTTTTGGCTCTCCTTTCACTACTGTTCAATCAATGTTTCCTTTTCTTTGGTATGATATCATCATGAAATCTTTTATCCTCTTAATAGTTGATTTAAGTTGTATGCTAATTTTGATTAGGTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGGGTATGTAGCTCTTGTTATGTGTGAGAATATCGATTTAACATTTTAGTTTGTTAATTTGCGGTGAGTTCCAAATATTGTATGACTAGTATCTTATATCTCCTCCCACTGTATCTTGCCTTATGATCTATCAACCAACAGAATGACCCACAGACGCTCCTATGCATTGCAAATCCTCCTTATTAACCATGAAACTAAGTGAATAGGAAACTACCAATATCAGTATATTACTAAAGTAAGGATGAAGTAGGAAGTCATGTAGTTACTGGGGAAAAAACGAAGAAAGCTCCTTTTTTTTTCTGAGAAAGGAAAAAAAATATTTATGTTTCGTTTTGTTTTAGCAGTTTTTTTTTTGCCAGGAGTGTACTTTCTTTTGATGCTTAGAATAATAATGAAAATGTTCTGTTTCTTCTTTTGATCCTCAATACAAAACAAAAAACCTTTTTGTGGTCACGTTTTCGAGAAAACCCCTCTTTTCTTTTTTGAGAATATTGCTTTCCTCGGATTTTGTTATTGGGGATGGTCATGTTGAAGGTTGCTGAAGAAATAGATAACTTGGAGCCATTCCATTGTGTATGAAGTACCGTAGTACTGAGTTAGCACTTTTCTGGAGCATAGGATTACAAGCTTGAGAAATTGTTCTTTCCATTCTTGAAATGAGAGTGCTCTTTGTATGAGTACGGTGTTCTCGTGCTGTATTTTCTAATTTAAGTCAGTGATTATGTCTGTTTTAAATTGGTTTTACTCGTTAGTTATCACCATATGGTAGGAAAATAACCTCCCTCCTGCAATTTGGTCAAAATTGAAATTGTGGTAGCTTGAGATATGCAAGCCATGTGTTGATGGTATTGAACTTACATCATCTAGCTGGTCACCCACTCGTATGATTCCATGTTAACAACCATGTTAAACTTTTCCTTGAGTTTCGGCGACATACCAGATATAATTGTAGTAAAAAAACCAAAATATTAATTCTGCAATTAGATTATTGTGTTATAGTGAAGTCTGGTGGCTGGAATGTCTTCTATAATTGTGTTATAGTGTTGCTACTATTTGTAGAATAAGATGTTAATCAGTAGAGGTGCAAACTGATAAGGCATTAGTCACAAAAAGTTAGAGGATCTTCATGCCTCTCCTCAAGACTTTTGTTGTAGCTAGTGTTAAGTTTATATTGTGGTAAATGTTACATTGGATTTGCTCCAACTCTCGTGCACATGTCTTTCAATCTTTGACAATTGGTAATTGTCATTACTTGAGCTTGTTATTTGCCTTCTAAGCTGGTATCAGATTTGTGCCCATAAAATATTGTGGCATCCTTCCGCAAGAATTCTGGAAGATAACAAATAAGATACTCTTGACAAGGTACAGAGTGTCAAATAGTCCTCTGTGAAAAATCTACATTTTCTATTAACTGTATGAAATTAATGTTGGCGTAAACGTTACTCTACACTCACTAAACCTGTTTACGCCATTTTGGATATGGATTGCCATCTGTTATTCATCGGAAGGTCATTTTTTTTGCCATAACTGTTGATCATTGCAGGTGTTTGCAACCATGCATTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTGGTAAGTTGTATATATATTGCCGTCTCTGCATACATAAGCTGTCATTGTACATTACCTGCTAATTAAGTACAACACACTTTCAGATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACT</genome_strand>
        <mrna_strand>ATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGT..........................................................................................................................GTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGCAACCATGCATTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTG...................................................................................ATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244408" ref_strand="+" ref_description="SGN-E244408 [cLEF-3-C19]">
      <seq>agttcaaccggagctggaacgtctaacaaaaagccgaagcgatttgagatcaaaaagtggaacgccgtttctctctgggcttgggatattgtggtagataattgtgccatctgtaggaatcacatcatggatctgtgtatcgagtgtcaagctaatcaagctagcgcaacaagtgaggaatgcacagttgcttggggtgtttgcaaccatgcattccacttgcattgcatcgagcaggtggctcaagactcgtcaagtgtgtccacttgataacagcgagtgggagtttcagaagtatggtcactagaatttactgttggtgtacagtgaatgagaggagcttcaaaactatggtcattacagtttttctgtcatcgacgttgaaaagaacaattctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="108819" stop="105322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108606" g_stop="108522" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108521" i_stop="107680" i_length="842">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107679" g_stop="107629" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="136" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107628" i_stop="107507" i_length="122">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107506" g_stop="107447" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="196" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107446" i_stop="105907" i_length="1540">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105906" g_stop="105835" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="269" r_length="73" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105834" i_stop="105752" i_length="83">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105751" g_stop="105622" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="399" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E244408" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108606" e_stop="108522"/>
          <exon e_start="107679" e_stop="107629"/>
          <exon e_start="107506" e_stop="107447"/>
          <exon e_start="105906" e_stop="105835"/>
          <exon e_start="105751" e_stop="105622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGGGTGAATTTCTAACCCTAATTAATTCCATCGTATTTTATATACGTATTTATTGATGTAGATTTAACGATTTTATGCTGGATTTAAAGTAATGGAATCCGGTGATCTATTTAGATTTTAAATCAGTGATTGCGAAGTACTATTGCTAGTTTTTGCTGATGATGTTGTGAACTTAGTGCAAGTGTACGTTTAGGAACTTTATAGTTCGAATGTATGTATGTACGTTTTTCAAGGCAAAGGTAGTGAATATTCCTACGCTCGCTGCTGAAAAATTGGATGTATGATGGATGATTGTATGGAATTTGATTTGTAAACAGCAGCACTATGTGTATTGGCTTACGTGAAATTAGTAGTGAATGTCAGTCCAAAAATATGAAGTTTGTGTAATGTACTAATGGTAATATTGTTTTGTTACCTGAGCTTGTAGTTGATATCCGTGAATCGGAATTAGAAAGGAATATTGACTGGAAGATGCTTACAGCAATTTGAAGTTATTTGTATCTTCTTTTAGGAGGTGGTTTGATCATAGATGTTGACGATTTATCATCTATCTTTTAAGTTTGATCGTGTTCAATGTACTGTTCTCTTTGTAGTACTTATTGTTACTTCTATAAATAAAAATTGTTACATCTTATGTTACTATTTATGGTTTACATTCAAATATATTATGATGTATGAGCAGTTCTGTACTTCCATGATTTTGTGTTGCACATAATATACAATTATTGTATTTGTTTTGTTTGGTGTGAATTTGATTTTCTTCAACATGCTCATTGTCCGAATTGCGTTGGAGTGATCTTTCTGATTCTTTTTATCAATCTTGTGAATTGTGATTTTGGTTGCAGATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGTGTGAGTTTTGGCTCTCCTTTCACTACTGTTCAATCAATGTTTCCTTTTCTTTGGTATGATATCATCATGAAATCTTTTATCCTCTTAATAGTTGATTTAAGTTGTATGCTAATTTTGATTAGGTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGGGTATGTAGCTCTTGTTATGTGTGAGAATATCGATTTAACATTTTAGTTTGTTAATTTGCGGTGAGTTCCAAATATTGTATGACTAGTATCTTATATCTCCTCCCACTGTATCTTGCCTTATGATCTATCAACCAACAGAATGACCCACAGACGCTCCTATGCATTGCAAATCCTCCTTATTAACCATGAAACTAAGTGAATAGGAAACTACCAATATCAGTATATTACTAAAGTAAGGATGAAGTAGGAAGTCATGTAGTTACTGGGGAAAAAACGAAGAAAGCTCCTTTTTTTTTCTGAGAAAGGAAAAAAAATATTTATGTTTCGTTTTGTTTTAGCAGTTTTTTTTTTGCCAGGAGTGTACTTTCTTTTGATGCTTAGAATAATAATGAAAATGTTCTGTTTCTTCTTTTGATCCTCAATACAAAACAAAAAACCTTTTTGTGGTCACGTTTTCGAGAAAACCCCTCTTTTCTTTTTTGAGAATATTGCTTTCCTCGGATTTTGTTATTGGGGATGGTCATGTTGAAGGTTGCTGAAGAAATAGATAACTTGGAGCCATTCCATTGTGTATGAAGTACCGTAGTACTGAGTTAGCACTTTTCTGGAGCATAGGATTACAAGCTTGAGAAATTGTTCTTTCCATTCTTGAAATGAGAGTGCTCTTTGTATGAGTACGGTGTTCTCGTGCTGTATTTTCTAATTTAAGTCAGTGATTATGTCTGTTTTAAATTGGTTTTACTCGTTAGTTATCACCATATGGTAGGAAAATAACCTCCCTCCTGCAATTTGGTCAAAATTGAAATTGTGGTAGCTTGAGATATGCAAGCCATGTGTTGATGGTATTGAACTTACATCATCTAGCTGGTCACCCACTCGTATGATTCCATGTTAACAACCATGTTAAACTTTTCCTTGAGTTTCGGCGACATACCAGATATAATTGTAGTAAAAAAACCAAAATATTAATTCTGCAATTAGATTATTGTGTTATAGTGAAGTCTGGTGGCTGGAATGTCTTCTATAATTGTGTTATAGTGTTGCTACTATTTGTAGAATAAGATGTTAATCAGTAGAGGTGCAAACTGATAAGGCATTAGTCACAAAAAGTTAGAGGATCTTCATGCCTCTCCTCAAGACTTTTGTTGTAGCTAGTGTTAAGTTTATATTGTGGTAAATGTTACATTGGATTTGCTCCAACTCTCGTGCACATGTCTTTCAATCTTTGACAATTGGTAATTGTCATTACTTGAGCTTGTTATTTGCCTTCTAAGCTGGTATCAGATTTGTGCCCATAAAATATTGTGGCATCCTTCCGCAAGAATTCTGGAAGATAACAAATAAGATACTCTTGACAAGGTACAGAGTGTCAAATAGTCCTCTGTGAAAAATCTACATTTTCTATTAACTGTATGAAATTAATGTTGGCGTAAACGTTACTCTACACTCACTAAACCTGTTTACGCCATTTTGGATATGGATTGCCATCTGTTATTCATCGGAAGGTCATTTTTTTTGCCATAACTGTTGATCATTGCAGGTGTTTGCAACCATGCATTCCACTTCCATTGCAT-TAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTGGTAAGTTGTATATATATTGCCGTCTCTGCATACATAAGCTGTCATTGTACATTACCTGCTAATTAAGTACAACACACTTTCAGATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGC</genome_strand>
        <mrna_strand>AGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGT..........................................................................................................................GTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGCAACCATGCATTCCACTTGCATTGCATCGAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTG...................................................................................ATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293382" ref_strand="+" ref_description="SGN-E293382 [cLET-18-J1]">
      <seq>taattttgaaaaatctgtgaactcttcgaagcttaaaaattcaatggcgtaaccggataccgatgtgccgatggttcccgccggcgagagttcaaccggagctggaacgtctaacaaaaagccgaagcgatttgagatcaaaaagtggaacgccgattctctctgggcttgggatattgtggtagataattgtgccatctgtaggaatcacatcatggatctgtgtatcgagcgtcaagctaatcaagctagcgcaacaagtgaggaatgcacagttgcttggggtgtttgcaaccatgcattccactttcattgcattagcaggtggctcaagactcgtcaagtgtgtccacttgataacagcgagtgggagtttcagaagtatggtcactagaatttactgttggggtacagcgaatgagaggagcttcaaaactatggtcattacagtttttttgtcatcgacgttgaaaagaacagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0032P11-SV6Lw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0032P11.1" temp_strand="-" temp_description="C12SLe0032P11.1  AC235099.2 htgs_phase:2 submitted_to_sgn_as:gi|237823119|gb|AC235099.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-32P11, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="108819" stop="105324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108694" g_stop="108522" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108521" i_stop="107680" i_length="842">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107679" g_stop="107629" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="224" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107628" i_stop="107507" i_length="122">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107506" g_stop="107447" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="284" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107446" i_stop="105907" i_length="1540">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105906" g_stop="105835" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="356" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105834" i_stop="105752" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105751" g_stop="105624" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="484" r_length="128" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0032P11.1" gen_strand="-" ref_id="SGN-E293382" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0032P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108694" e_stop="108522"/>
          <exon e_start="107679" e_stop="107629"/>
          <exon e_start="107506" e_stop="107447"/>
          <exon e_start="105906" e_stop="105835"/>
          <exon e_start="105751" e_stop="105624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTGAAAAATCTGTGAACTCTTCGAAGCTTAAAAATTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGGGTGAATTTCTAACCCTAATTAATTCCATCGTATTTTATATACGTATTTATTGATGTAGATTTAACGATTTTATGCTGGATTTAAAGTAATGGAATCCGGTGATCTATTTAGATTTTAAATCAGTGATTGCGAAGTACTATTGCTAGTTTTTGCTGATGATGTTGTGAACTTAGTGCAAGTGTACGTTTAGGAACTTTATAGTTCGAATGTATGTATGTACGTTTTTCAAGGCAAAGGTAGTGAATATTCCTACGCTCGCTGCTGAAAAATTGGATGTATGATGGATGATTGTATGGAATTTGATTTGTAAACAGCAGCACTATGTGTATTGGCTTACGTGAAATTAGTAGTGAATGTCAGTCCAAAAATATGAAGTTTGTGTAATGTACTAATGGTAATATTGTTTTGTTACCTGAGCTTGTAGTTGATATCCGTGAATCGGAATTAGAAAGGAATATTGACTGGAAGATGCTTACAGCAATTTGAAGTTATTTGTATCTTCTTTTAGGAGGTGGTTTGATCATAGATGTTGACGATTTATCATCTATCTTTTAAGTTTGATCGTGTTCAATGTACTGTTCTCTTTGTAGTACTTATTGTTACTTCTATAAATAAAAATTGTTACATCTTATGTTACTATTTATGGTTTACATTCAAATATATTATGATGTATGAGCAGTTCTGTACTTCCATGATTTTGTGTTGCACATAATATACAATTATTGTATTTGTTTTGTTTGGTGTGAATTTGATTTTCTTCAACATGCTCATTGTCCGAATTGCGTTGGAGTGATCTTTCTGATTCTTTTTATCAATCTTGTGAATTGTGATTTTGGTTGCAGATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGTGTGAGTTTTGGCTCTCCTTTCACTACTGTTCAATCAATGTTTCCTTTTCTTTGGTATGATATCATCATGAAATCTTTTATCCTCTTAATAGTTGATTTAAGTTGTATGCTAATTTTGATTAGGTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGGGTATGTAGCTCTTGTTATGTGTGAGAATATCGATTTAACATTTTAGTTTGTTAATTTGCGGTGAGTTCCAAATATTGTATGACTAGTATCTTATATCTCCTCCCACTGTATCTTGCCTTATGATCTATCAACCAACAGAATGACCCACAGACGCTCCTATGCATTGCAAATCCTCCTTATTAACCATGAAACTAAGTGAATAGGAAACTACCAATATCAGTATATTACTAAAGTAAGGATGAAGTAGGAAGTCATGTAGTTACTGGGGAAAAAACGAAGAAAGCTCCTTTTTTTTTCTGAGAAAGGAAAAAAAATATTTATGTTTCGTTTTGTTTTAGCAGTTTTTTTTTTGCCAGGAGTGTACTTTCTTTTGATGCTTAGAATAATAATGAAAATGTTCTGTTTCTTCTTTTGATCCTCAATACAAAACAAAAAACCTTTTTGTGGTCACGTTTTCGAGAAAACCCCTCTTTTCTTTTTTGAGAATATTGCTTTCCTCGGATTTTGTTATTGGGGATGGTCATGTTGAAGGTTGCTGAAGAAATAGATAACTTGGAGCCATTCCATTGTGTATGAAGTACCGTAGTACTGAGTTAGCACTTTTCTGGAGCATAGGATTACAAGCTTGAGAAATTGTTCTTTCCATTCTTGAAATGAGAGTGCTCTTTGTATGAGTACGGTGTTCTCGTGCTGTATTTTCTAATTTAAGTCAGTGATTATGTCTGTTTTAAATTGGTTTTACTCGTTAGTTATCACCATATGGTAGGAAAATAACCTCCCTCCTGCAATTTGGTCAAAATTGAAATTGTGGTAGCTTGAGATATGCAAGCCATGTGTTGATGGTATTGAACTTACATCATCTAGCTGGTCACCCACTCGTATGATTCCATGTTAACAACCATGTTAAACTTTTCCTTGAGTTTCGGCGACATACCAGATATAATTGTAGTAAAAAAACCAAAATATTAATTCTGCAATTAGATTATTGTGTTATAGTGAAGTCTGGTGGCTGGAATGTCTTCTATAATTGTGTTATAGTGTTGCTACTATTTGTAGAATAAGATGTTAATCAGTAGAGGTGCAAACTGATAAGGCATTAGTCACAAAAAGTTAGAGGATCTTCATGCCTCTCCTCAAGACTTTTGTTGTAGCTAGTGTTAAGTTTATATTGTGGTAAATGTTACATTGGATTTGCTCCAACTCTCGTGCACATGTCTTTCAATCTTTGACAATTGGTAATTGTCATTACTTGAGCTTGTTATTTGCCTTCTAAGCTGGTATCAGATTTGTGCCCATAAAATATTGTGGCATCCTTCCGCAAGAATTCTGGAAGATAACAAATAAGATACTCTTGACAAGGTACAGAGTGTCAAATAGTCCTCTGTGAAAAATCTACATTTTCTATTAACTGTATGAAATTAATGTTGGCGTAAACGTTACTCTACACTCACTAAACCTGTTTACGCCATTTTGGATATGGATTGCCATCTGTTATTCATCGGAAGGTCATTTTTTTTGCCATAACTGTTGATCATTGCAGGTGTTTGCAACCATGCATTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTGGTAAGTTGTATATATATTGCCGTCTCTGCATACATAAGCTGTCATTGTACATTACCTGCTAATTAAGTACAACACACTTTCAGATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCT</genome_strand>
        <mrna_strand>TAATTTTGAAAAATCTGTGAACTCTTCGAAGCTTAAAAATTCAATGGCGTAACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGATTCTCTCTGGGCTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGT..........................................................................................................................GTATCGAGCGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGCAACCATGCATTCCACTTTCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTG...................................................................................ATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGGGTACAGCGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTTTGTCATCGACGTTGAAAAGAACAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>201</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7973" PGL_stop="5902"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7973" e_stop="7844"/>
            <exon e_start="7751" e_stop="7671"/>
            <exon e_start="7346" e_stop="7287"/>
            <exon e_start="6811" e_stop="6667"/>
            <exon e_start="6208" e_stop="5902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.695" acc_prob="0.979" e_score="0.977"/>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="0.951"/>
          <exon-intron don_prob="0.985" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.969" e_score="0.986"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="7973" e_stop="7844" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.695" acc_prob="0.979">
            <gDNA_intron_boundary i_start="7843" i_stop="7752" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.951">
            <gDNA_exon_boundary e_start="7751" e_stop="7671" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="7670" i_stop="7347" i_length="324"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7346" e_stop="7287" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.982">
            <gDNA_intron_boundary i_start="7286" i_stop="6812" i_length="475"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="6811" e_stop="6667" e_length="145"/>
          </exon>
          <intron i_serial="4" don_prob="0.937" acc_prob="0.969">
            <gDNA_intron_boundary i_start="6666" i_stop="6209" i_length="458"/>
          </intron>
          <exon e_serial="5" e_score="0.974">
            <gDNA_exon_boundary e_start="6208" e_stop="5902" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7973" stop="7844"/>
              <exon start="7751" stop="7671"/>
              <exon start="7346" stop="7287"/>
              <exon start="6811" stop="6667"/>
              <exon start="6208" stop="5902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545880" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGGCATTAGCTCAGTCTGGTGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGGCACTTCCACACCGGCAGGGGATCTCAAAGAGTACCAAGCGATTGTACATTGTTTTGGCCAGAACCCAGAG : TTACGAGTGAACTCCACGAAGTCTATGATTGGTCACCTACTAGGAGCTGCTGGTGCTGTTGAAGCTGTAGCAATTATTCAG : GCAATACGAACTGGATGGGTTCATCCGAATATAAATCTTGATACCCCAGATGAGGGTGTG : GATACAAATGTACTTGTGGGTTCGAAAAAAGAAAGATTGGATATTAAGGTGGCGATATCGAATTCTTTTGGATTTGGTGGCCATAATTCATCGATATTATTTGCTCCCTACAAGTAAATATATTGTCCATCCCAACAAACCTAAG : GTAAATTGAAATAGGGTCCTTGATTTCGAGTTACATGGAGTCAAAATTGACGATGACTTCTCTAGTGGAAGAAGGTATTTGTAGTAACCGGTAGATAATTGTTGGAGCAAGCACGTGAAAGGGAAAATCGCGTAGGATTTTCCTTTTCGATCATGGCTACTATAGCATTCTTGGTTTCGATCATAATATATATAGATTGATCCGATATCTGATTCAAATCCAATATAGTTTTCAAAAATTATTGTATCAAAATTGTTGTTACTATAGAACATTTCTAATAATAGCATACTATTATTCTCTTCAAAAA</gDNA_template>
            <first_frame> E  G  I  S  S  V  W  C  I  Q  G  R  C  E  L  H  *  C  A  W  H  F  H  T  G  R  G  S  Q  R  V  P  S  D  C  T  L  F  W  P  E  P  R   : V  T  S  E  L  H  E  V  Y  D  W  S  P  T  R  S  C  W  C  C  *  S  C  S  N  Y  S   : G  N  T  N  W  M  G  S  S  E  Y  K  S  *  Y  P  R  *  G  C   : G  Y  K  C  T  C  G  F  E  K  R  K  I  G  Y  *  G  G  D  I  E  F  F  W  I  W  W  P  *  F  I  D  I  I  C  S  L  Q  V  N  I  L  S  I  P  T  N  L  R :   *  I  E  I  G  S  L  I  S  S  Y  M  E  S  K  L  T  M  T  S  L  V  E  E  G  I  C  S  N  R  *  I  I  V  G  A  S  T  *  K  G  K  S  R  R  I  F  L  F  D  H  G  Y  Y  S  I  L  G  F  D  H  N  I  Y  R  L  I  R  Y  L  I  Q  I  Q  Y  S  F  Q  K  L  L  Y  Q  N  C  C  Y  Y  R  T  F  L  I  I  A  Y  Y  Y  S  L  Q  K </first_frame>
            <second_frame>  K  A  L  A  Q  S  G  V  S  K  E  D  V  N  Y  I  N  A  H  G  T  S  T  P  A  G  D  L  K  E  Y  Q  A  I  V  H  C  F  G  Q  N  P  E  :  L  R  V  N  S  T  K  S  M  I  G  H  L  L  G  A  A  G  A  V  E  A  V  A  I  I  Q  :  A  I  R  T  G  W  V  H  P  N  I  N  L  D  T  P  D  E  G  V  :  D  T  N  V  L  V  G  S  K  K  E  R  L  D  I  K  V  A  I  S  N  S  F  G  F  G  G  H  N  S  S  I  L  F  A  P  Y  K  *  I  Y  C  P  S  Q  Q  T  *   : G  K  L  K  *  G  P  *  F  R  V  T  W  S  Q  N  *  R  *  L  L  *  W  K  K  V  F  V  V  T  G  R  *  L  L  E  Q  A  R  E  R  E  N  R  V  G  F  S  F  S  I  M  A  T  I  A  F  L  V  S  I  I  I  Y  I  D  *  S  D  I  *  F  K  S  N  I  V  F  K  N  Y  C  I  K  I  V  V  T  I  E  H  F  *  *  *  H  T  I  I  L  F  K   </second_frame>
            <third_frame>   R  H  *  L  S  L  V  Y  P  R  K  M  *  T  T  L  M  R  M  A  L  P  H  R  Q  G  I  S  K  S  T  K  R  L  Y  I  V  L  A  R  T  Q  S :   Y  E  *  T  P  R  S  L  *  L  V  T  Y  *  E  L  L  V  L  L  K  L  *  Q  L  F  R :   Q  Y  E  L  D  G  F  I  R  I  *  I  L  I  P  Q  M  R  V  W :   I  Q  M  Y  L  W  V  R  K  K  K  D  W  I  L  R  W  R  Y  R  I  L  L  D  L  V  A  I  I  H  R  Y  Y  L  L  P  T  S  K  Y  I  V  H  P  N  K  P  K  :  V  N  *  N  R  V  L  D  F  E  L  H  G  V  K  I  D  D  D  F  S  S  G  R  R  Y  L  *  *  P  V  D  N  C  W  S  K  H  V  K  G  K  I  A  *  D  F  P  F  R  S  W  L  L  *  H  S  W  F  R  S  *  Y  I  *  I  D  P  I  S  D  S  N  P  I  *  F  S  K  I  I  V  S  K  L  L  L  L  *  N  I  S  N  N  S  I  L  L  F  S  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7972" stop="7844"/>
                    <exon start="7751" stop="7671"/>
                    <exon start="7346" stop="7287"/>
                    <exon start="6811" stop="6695"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KALAQSGVSKEDVNYINAHGTSTPAGDLKEYQAIVHCFGQNPELRVNSTKSMIGHLLGAAGAVEAVAIIQAIRTGWVHPNINLDTPDEGVDTNVLVGSKKERLDIKVAISNSFGFGGHNSSILFAPYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6209" e_stop="5902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="6209" e_stop="5902" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6209" stop="5902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTAAATTGAAATAGGGTCCTTGATTTCGAGTTACATGGAGTCAAAATTGACGATGACTTCTCTAGTGGAAGAAGGTATTTGTAGTAACCGGTAGATAATTGTTGGAGCAAGCACGTGAAAGGGAAAATCGCGTAGGATTTTCCTTTTCGATCATGGCTACTATAGCATTCTTGGTTTCGATCATAATATATATAGATTGATCCGATATCTGATTCAAATCCAATATAGTTTTCAAAAATTATTGTATCAAAATTGTTGTTACTATAGAACATTTCTAATAATAGCATACTATTATTCTCTTCAAAAA</gDNA_template>
            <first_frame> G  K  L  K  *  G  P  *  F  R  V  T  W  S  Q  N  *  R  *  L  L  *  W  K  K  V  F  V  V  T  G  R  *  L  L  E  Q  A  R  E  R  E  N  R  V  G  F  S  F  S  I  M  A  T  I  A  F  L  V  S  I  I  I  Y  I  D  *  S  D  I  *  F  K  S  N  I  V  F  K  N  Y  C  I  K  I  V  V  T  I  E  H  F  *  *  *  H  T  I  I  L  F  K   </first_frame>
            <second_frame>  V  N  *  N  R  V  L  D  F  E  L  H  G  V  K  I  D  D  D  F  S  S  G  R  R  Y  L  *  *  P  V  D  N  C  W  S  K  H  V  K  G  K  I  A  *  D  F  P  F  R  S  W  L  L  *  H  S  W  F  R  S  *  Y  I  *  I  D  P  I  S  D  S  N  P  I  *  F  S  K  I  I  V  S  K  L  L  L  L  *  N  I  S  N  N  S  I  L  L  F  S  S  K  </second_frame>
            <third_frame>   *  I  E  I  G  S  L  I  S  S  Y  M  E  S  K  L  T  M  T  S  L  V  E  E  G  I  C  S  N  R  *  I  I  V  G  A  S  T  *  K  G  K  S  R  R  I  F  L  F  D  H  G  Y  Y  S  I  L  G  F  D  H  N  I  Y  R  L  I  R  Y  L  I  Q  I  Q  Y  S  F  Q  K  L  L  Y  Q  N  C  C  Y  Y  R  T  F  L  I  I  A  Y  Y  Y  S  L  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0032P11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10822" PGL_stop="10535"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10822" e_stop="10701"/>
            <exon e_start="10627" e_stop="10535"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10822" e_stop="10701" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.955">
            <gDNA_intron_boundary i_start="10700" i_stop="10628" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10627" e_stop="10535" e_length="93"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10822" stop="10701"/>
              <exon start="10627" stop="10535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200032" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACAGGAATGGATGTGATCACACCAAATGGTCAGGATCCCGATGTGTTCTATGAAAACTTGCTTCAAGGTGTCAGTGGCATAAGTGAGATAGAATCTTTTGATTGTTCACAATTTCCAACA : AGAATTGCTGGAGAGATCAAGTCTTTCTCAAGTGATGGCTGGATTTCACCTAAACTTTCTAAACGAATGGACAAGTTCATGCTTTACGCTCTA</gDNA_template>
            <first_frame> L  Q  E  W  M  *  S  H  Q  M  V  R  I  P  M  C  S  M  K  T  C  F  K  V  S  V  A  *  V  R  *  N  L  L  I  V  H  N  F  Q  Q :   E  L  L  E  R  S  S  L  S  Q  V  M  A  G  F  H  L  N  F  L  N  E  W  T  S  S  C  F  T  L   </first_frame>
            <second_frame>  Y  R  N  G  C  D  H  T  K  W  S  G  S  R  C  V  L  *  K  L  A  S  R  C  Q  W  H  K  *  D  R  I  F  *  L  F  T  I  S  N   : K  N  C  W  R  D  Q  V  F  L  K  *  W  L  D  F  T  *  T  F  *  T  N  G  Q  V  H  A  L  R  S  </second_frame>
            <third_frame>   T  G  M  D  V  I  T  P  N  G  Q  D  P  D  V  F  Y  E  N  L  L  Q  G  V  S  G  I  S  E  I  E  S  F  D  C  S  Q  F  P  T  :  R  I  A  G  E  I  K  S  F  S  S  D  G  W  I  S  P  K  L  S  K  R  M  D  K  F  M  L  Y  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10820" stop="10701"/>
                    <exon start="10627" stop="10535"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGMDVITPNGQDPDVFYENLLQGVSGISEIESFDCSQFPTRIAGEIKSFSSDGWISPKLSKRMDKFMLYAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="22187" PGL_stop="18815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22187" e_stop="22041"/>
            <exon e_start="21411" e_stop="21239"/>
            <exon e_start="20612" e_stop="20433"/>
            <exon e_start="20350" e_stop="20195"/>
            <exon e_start="19796" e_stop="19719"/>
            <exon e_start="19131" e_stop="18815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.824" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.905" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22187" e_stop="22041" e_length="147"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21411" e_stop="21239" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20612" e_stop="20433" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.824" acc_prob="0.905">
            <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="20350" e_stop="20195" e_length="156"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19796" e_stop="19719" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.905">
            <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19131" e_stop="18815" e_length="317"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22187" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22162" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="19027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22155" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22135" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22117" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22117" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22113" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22112" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22110" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="19012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22106" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="19037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22092" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22090" stop="22041"/>
              <exon start="21411" stop="21300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22089" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22089" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22088" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22086" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22086" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22081" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22076" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22067" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21309" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21274" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20521" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20481" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20458" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20342" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20300" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20259" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20249" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296440" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20249" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20219" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20218" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265218" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19098" stop="18824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19095" stop="18824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19091" stop="18824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218049" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTCTTAGAAACTTCTAGGGTTTTGTTATCCTTAACAGCTCTACACATTTTATCTACAATAGTCTAAAGTCTAAACACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG : GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG : TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG : AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG : GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG : GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGAATCCAGTCT</gDNA_template>
            <first_frame> P  S  *  K  L  L  G  F  C  Y  P  *  Q  L  Y  T  F  Y  L  Q  *  S  K  V  *  T  H  T  F  S  P  *  *  R  K  P  L  H  C  Y  *  G  S  S  I  L  P  I  K  :  E  W  R  Q  L  S  *  P  R  H  P  S  L  P  R  V  L  H  P  L  R  G  L  D  P  *  V  I  *  R  L  R  L  S  L  L  *  S  R  I  E  G  R  S  M  D  S  S  L  R  L  Q  Q  L  Y  P  P  S :   T  L  H  S  N  H  W  V  I  E  F  W  *  R  L  R  L  Q  R  R  R  V  *  A  A  S  C  F  Q  Y  Q  H  S  R  S  R  K  E  A  R  L  L  L  S  G  K  V  I  Q  L  A  R  L  R  W  R  L  V  *  R :   M  V  P  T  W  C  T  R  N  M  R  E  L  N  W  S  L  M  D  Q  S  T  *  F  *  K  R  M  T  L  L  A  Y  L  R  Q  M  I  S  R  I  C  S  P  *  M  T  E  F  *  S  R :   W  L  K  L  R  K  K  L  L  G  D  C  F  *  A  R  L  Q  R  R  N  L  H  L  A  R :   *  *  L  L  D  P  V  L  S  T  R  K  G  K  G  K  H  F  Q  Y  L  L  E  I  Q  F  C  I  P  N  M  L  A  M  T  S  K  E  L  M  V  L  N  T  S  H  *  G  H  L  M  *  L  L  C  F  S  K  C  F  V  I  Y  L  T  S  Q  F  I  L  I  P  V  F  C  S  V  V  *  K  R  G  D  C  C  N  H  F  G  I  K  L  L  Q  I  N  G  Q  F  L  V  Q  N  P  V  </first_frame>
            <second_frame>  P  L  R  N  F  *  G  F  V  I  L  N  S  S  T  H  F  I  Y  N  S  L  K  S  K  H  T  P  S  V  H  S  R  E  N  L  S  I  A  I  K  A  H  Q  F  C  Q  *  R :   N  G  D  N  S  A  D  R  V  I  H  L  C  Q  G  F  C  I  L  *  G  A  *  I  H  K  *  F  K  G  C  V  F  R  S  F  K  A  E  *  K  V  V  P  W  T  R  R  *  G  F  N  S  C  I  P  Q   : V  H  F  T  Q  T  I  G  *  *  S  S  G  E  D  *  D  C  R  G  E  E  C  R  R  H  P  A  S  S  I  S  T  V  E  A  A  R  R  R  G  C  C  C  R  G  R  S  F  N  W  Q  D  Y  G  G  D  *  Y  K   : E  W  Y  P  R  G  V  L  E  I  C  G  N  *  T  G  V  *  W  I  K  A  P  D  F  E  R  G  *  H  C  W  H  T  *  D  R  *  Y  Q  G  S  A  A  L  E  *  Q  S  S  N  Q   : G  G  *  S  *  G  K  N  F  W  G  I  V  F  E  P  G  C  K  G  E  T  F  I  W  R   : G  D  S  C  W  T  R  S  S  R  R  G  R  E  K  E  S  T  F  S  I  S  W  K  Y  S  F  V  F  Q  I  C  W  Q  *  L  Q  R  S  *  W  F  *  I  H  H  I  E  G  I  *  C  N  C  C  A  S  V  N  V  L  L  F  I  *  Q  V  S  S  F  S  Y  Q  Y  F  A  V  *  Y  R  K  E  E  I  V  V  T  I  L  E  *  N  F  C  K  L  M  V  N  F  *  C  R  I  Q  S </second_frame>
            <third_frame>   L  L  E  T  S  R  V  L  L  S  L  T  A  L  H  I  L  S  T  I  V  *  S  L  N  T  H  L  Q  S  I  V  E  K  T  S  P  L  L  L  R  L  I  N  F  A  N  K   : G  M  A  T  T  Q  L  T  A  S  S  I  S  A  K  G  F  A  S  F  E  G  L  R  S  I  S  N  L  K  V  A  S  F  A  P  L  K  Q  N  R  R  S  F  H  G  L  V  V  K  A  S  T  V  V  S  P  K  :  Y  T  S  L  K  P  L  G  D  R  V  L  V  K  I  K  T  A  E  E  K  S  V  G  G  I  L  L  P  V  S  A  Q  S  K  P  Q  G  G  E  V  V  A  V  G  E  G  H  S  I  G  K  T  T  V  E  I  S  I  K  :  N  G  T  H  V  V  Y  S  K  Y  A  G  T  E  L  E  F  D  G  S  K  H  L  I  L  K  E  D  D  I  V  G  I  L  E  T  D  D  I  K  D  L  Q  P  L  N  D  R  V  L  I  K  :  V  A  E  V  E  E  K  T  S  G  G  L  F  L  S  Q  A  A  K  E  K  P  S  F  G  A  :  V  I  A  V  G  P  G  P  L  D  E  E  G  K  R  K  A  L  S  V  S  P  G  N  T  V  L  Y  S  K  Y  A  G  N  D  F  K  G  A  D  G  S  E  Y  I  T  L  R  A  S  D  V  I  A  V  L  Q  *  M  F  C  Y  L  F  N  K  S  V  H  S  H  T  S  I  L  Q  C  S  I  E  K  R  R  L  L  *  P  F  W  N  K  T  F  A  N  *  W  S  I  S  S  A  E  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22119" stop="22041"/>
                    <exon start="21411" stop="21239"/>
                    <exon start="20612" stop="20433"/>
                    <exon start="20350" stop="20195"/>
                    <exon start="19796" stop="19719"/>
                    <exon start="19131" stop="18958"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLNTHLQSIVEKTSPLLLRLINFANKGMATTQLTASSISAKGFASFEGLRSISNLKVASFAPLKQNRRSFHGLVVKASTVVSPKYTSLKPLGDRVLVKIKTAEEKSVGGILLPVSAQSKPQGGEVVAVGEGHSIGKTTVEISIKNGTHVVYSKYAGTELEFDGSKHLILKEDDIVGILETDDIKDLQPLNDRVLIKVAEVEEKTSGGLFLSQAAKEKPSFGAVIAVGPGPLDEEGKRKALSVSPGNTVLYSKYAGNDFKGADGSEYITLRASDVIAVLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22089" e_stop="21239"/>
            <exon e_start="20612" e_stop="20433"/>
            <exon e_start="20350" e_stop="20195"/>
            <exon e_start="19796" e_stop="19719"/>
            <exon e_start="19131" e_stop="18815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="0.970"/>
          <exon-intron don_prob="0.824" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.905" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="22089" e_stop="21239" e_length="851"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20612" e_stop="20433" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.824" acc_prob="0.905">
            <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20350" e_stop="20195" e_length="156"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19796" e_stop="19719" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.905">
            <gDNA_intron_boundary i_start="19718" i_stop="19132" i_length="587"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19131" e_stop="18815" e_length="317"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22089" stop="21366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22088" stop="21760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21414" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21309" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21274" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20521" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20481" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20458" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20342" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20300" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20259" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20249" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296440" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20249" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20219" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20218" stop="20195"/>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19796" stop="19719"/>
              <exon start="19131" stop="18815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265218" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19098" stop="18824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19095" stop="18824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19091" stop="18824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218049" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAGGTGCTTCCTTTTTTATCATTTGATTCAAATTCTTGAACTTTTGTCTTTAAATTTACTATTTTTTGCTTCTGGTTTGCTGTTCTTGTGACCACTTTTGTTGTGGGGTTCAGAGTTTTATGGTTCTTATCTAGAGAAAACTTCTCCTTTGTTATTAGTGAAACTAATCTCCCAATAATAAAGGTGCAATCTTTATTATCATTGTTGAAATTCTTGAATTTTTGTCTTCCAATTTAGGATATTTTTTGCTTCTGCTGTGGTATTTTTGTTGTGGGGTTCTTGATTTAGTTGAGAATTTTATGGTTCTTATCTGTAACTGTTCCTCTTTTTGCTTCTGCTGGTGCTACTCTTTATCTTTAATTCTATAGCTTGTCACATTTTTTTTACTATTTTTGCTTGTGGGGAGCTGCTGTTTACCCTTTTTGTAGTGGGGATTATGGTTTAGTTCACAATTATATGGTTCTTACCTTGAGTTTTACTCTTTTTTGCTTGTGGGGTTCCATTTCTGTTGTAGGGTTCTGGATTACATTCAGAATTCTTGAGTTTTTATCTATGGTTGTACTCTTTTTGCTTCTGGGATTTGAGGATATTGACTATTTCTGTTGTGGGGTTTCTTGATTGAGCTCGGAAAGGAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG : TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG : AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG : GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCG : GTGATAGCTGTTGGACCCGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTTTGTATTCCAAATATGCTGGCAATGACTTCAAAGGAGCTGATGGTTCTGAATACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAAATGTTTTGTTATTTATTTAACAAGTCAGTTCATTCTCATACCAGTATTTTGCAGTGTAGTATAGAAAAGAGGAGATTGTTGTAACCATTTTGGAATAAAACTTTTGCAAATTAATGGTCAATTTCTAGTGCAGAATCCAGTCT</gDNA_template>
            <first_frame> E  K  T  S  P  L  L  L  R  L  I  N  F  A  N  K  G  A  S  F  F  I  I  *  F  K  F  L  N  F  C  L  *  I  Y  Y  F  L  L  L  V  C  C  S  C  D  H  F  C  C  G  V  Q  S  F  M  V  L  I  *  R  K  L  L  L  C  Y  *  *  N  *  S  P  N  N  K  G  A  I  F  I  I  I  V  E  I  L  E  F  L  S  S  N  L  G  Y  F  L  L  L  L  W  Y  F  C  C  G  V  L  D  L  V  E  N  F  M  V  L  I  C  N  C  S  S  F  C  F  C  W  C  Y  S  L  S  L  I  L  *  L  V  T  F  F  L  L  F  L  L  V  G  S  C  C  L  P  F  L  *  W  G  L  W  F  S  S  Q  L  Y  G  S  Y  L  E  F  Y  S  F  L  L  V  G  F  H  F  C  C  R  V  L  D  Y  I  Q  N  S  *  V  F  I  Y  G  C  T  L  F  A  S  G  I  *  G  Y  *  L  F  L  L  W  G  F  L  I  E  L  G  K  E  W  R  Q  L  S  *  P  R  H  P  S  L  P  R  V  L  H  P  L  R  G  L  D  P  *  V  I  *  R  L  R  L  S  L  L  *  S  R  I  E  G  R  S  M  D  S  S  L  R  L  Q  Q  L  Y  P  P  S :   T  L  H  S  N  H  W  V  I  E  F  W  *  R  L  R  L  Q  R  R  R  V  *  A  A  S  C  F  Q  Y  Q  H  S  R  S  R  K  E  A  R  L  L  L  S  G  K  V  I  Q  L  A  R  L  R  W  R  L  V  *  R :   M  V  P  T  W  C  T  R  N  M  R  E  L  N  W  S  L  M  D  Q  S  T  *  F  *  K  R  M  T  L  L  A  Y  L  R  Q  M  I  S  R  I  C  S  P  *  M  T  E  F  *  S  R :   W  L  K  L  R  K  K  L  L  G  D  C  F  *  A  R  L  Q  R  R  N  L  H  L  A  R :   *  *  L  L  D  P  V  L  S  T  R  K  G  K  G  K  H  F  Q  Y  L  L  E  I  Q  F  C  I  P  N  M  L  A  M  T  S  K  E  L  M  V  L  N  T  S  H  *  G  H  L  M  *  L  L  C  F  S  K  C  F  V  I  Y  L  T  S  Q  F  I  L  I  P  V  F  C  S  V  V  *  K  R  G  D  C  C  N  H  F  G  I  K  L  L  Q  I  N  G  Q  F  L  V  Q  N  P  V  </first_frame>
            <second_frame>  R  K  P  L  H  C  Y  *  G  S  S  I  L  P  I  K  V  L  P  F  L  S  F  D  S  N  S  *  T  F  V  F  K  F  T  I  F  C  F  W  F  A  V  L  V  T  T  F  V  V  G  F  R  V  L  W  F  L  S  R  E  N  F  S  F  V  I  S  E  T  N  L  P  I  I  K  V  Q  S  L  L  S  L  L  K  F  L  N  F  C  L  P  I  *  D  I  F  C  F  C  C  G  I  F  V  V  G  F  L  I  *  L  R  I  L  W  F  L  S  V  T  V  P  L  F  A  S  A  G  A  T  L  Y  L  *  F  Y  S  L  S  H  F  F  Y  Y  F  C  L  W  G  A  A  V  Y  P  F  C  S  G  D  Y  G  L  V  H  N  Y  M  V  L  T  L  S  F  T  L  F  C  L  W  G  S  I  S  V  V  G  F  W  I  T  F  R  I  L  E  F  L  S  M  V  V  L  F  L  L  L  G  F  E  D  I  D  Y  F  C  C  G  V  S  *  L  S  S  E  R  N  G  D  N  S  A  D  R  V  I  H  L  C  Q  G  F  C  I  L  *  G  A  *  I  H  K  *  F  K  G  C  V  F  R  S  F  K  A  E  *  K  V  V  P  W  T  R  R  *  G  F  N  S  C  I  P  Q   : V  H  F  T  Q  T  I  G  *  *  S  S  G  E  D  *  D  C  R  G  E  E  C  R  R  H  P  A  S  S  I  S  T  V  E  A  A  R  R  R  G  C  C  C  R  G  R  S  F  N  W  Q  D  Y  G  G  D  *  Y  K   : E  W  Y  P  R  G  V  L  E  I  C  G  N  *  T  G  V  *  W  I  K  A  P  D  F  E  R  G  *  H  C  W  H  T  *  D  R  *  Y  Q  G  S  A  A  L  E  *  Q  S  S  N  Q   : G  G  *  S  *  G  K  N  F  W  G  I  V  F  E  P  G  C  K  G  E  T  F  I  W  R   : G  D  S  C  W  T  R  S  S  R  R  G  R  E  K  E  S  T  F  S  I  S  W  K  Y  S  F  V  F  Q  I  C  W  Q  *  L  Q  R  S  *  W  F  *  I  H  H  I  E  G  I  *  C  N  C  C  A  S  V  N  V  L  L  F  I  *  Q  V  S  S  F  S  Y  Q  Y  F  A  V  *  Y  R  K  E  E  I  V  V  T  I  L  E  *  N  F  C  K  L  M  V  N  F  *  C  R  I  Q  S </second_frame>
            <third_frame>   E  N  L  S  I  A  I  K  A  H  Q  F  C  Q  *  R  C  F  L  F  Y  H  L  I  Q  I  L  E  L  L  S  L  N  L  L  F  F  A  S  G  L  L  F  L  *  P  L  L  L  W  G  S  E  F  Y  G  S  Y  L  E  K  T  S  P  L  L  L  V  K  L  I  S  Q  *  *  R  C  N  L  Y  Y  H  C  *  N  S  *  I  F  V  F  Q  F  R  I  F  F  A  S  A  V  V  F  L  L  W  G  S  *  F  S  *  E  F  Y  G  S  Y  L  *  L  F  L  F  L  L  L  L  V  L  L  F  I  F  N  S  I  A  C  H  I  F  F  T  I  F  A  C  G  E  L  L  F  T  L  F  V  V  G  I  M  V  *  F  T  I  I  W  F  L  P  *  V  L  L  F  F  A  C  G  V  P  F  L  L  *  G  S  G  L  H  S  E  F  L  S  F  Y  L  W  L  Y  S  F  C  F  W  D  L  R  I  L  T  I  S  V  V  G  F  L  D  *  A  R  K  G  M  A  T  T  Q  L  T  A  S  S  I  S  A  K  G  F  A  S  F  E  G  L  R  S  I  S  N  L  K  V  A  S  F  A  P  L  K  Q  N  R  R  S  F  H  G  L  V  V  K  A  S  T  V  V  S  P  K  :  Y  T  S  L  K  P  L  G  D  R  V  L  V  K  I  K  T  A  E  E  K  S  V  G  G  I  L  L  P  V  S  A  Q  S  K  P  Q  G  G  E  V  V  A  V  G  E  G  H  S  I  G  K  T  T  V  E  I  S  I  K  :  N  G  T  H  V  V  Y  S  K  Y  A  G  T  E  L  E  F  D  G  S  K  H  L  I  L  K  E  D  D  I  V  G  I  L  E  T  D  D  I  K  D  L  Q  P  L  N  D  R  V  L  I  K  :  V  A  E  V  E  E  K  T  S  G  G  L  F  L  S  Q  A  A  K  E  K  P  S  F  G  A  :  V  I  A  V  G  P  G  P  L  D  E  E  G  K  R  K  A  L  S  V  S  P  G  N  T  V  L  Y  S  K  Y  A  G  N  D  F  K  G  A  D  G  S  E  Y  I  T  L  R  A  S  D  V  I  A  V  L  Q  *  M  F  C  Y  L  F  N  K  S  V  H  S  H  T  S  I  L  Q  C  S  I  E  K  R  R  L  L  *  P  F  W  N  K  T  F  A  N  *  W  S  I  S  S  A  E  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21421" stop="21239"/>
                    <exon start="20612" stop="20433"/>
                    <exon start="20350" stop="20195"/>
                    <exon start="19796" stop="19719"/>
                    <exon start="19131" stop="18958"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARKGMATTQLTASSISAKGFASFEGLRSISNLKVASFAPLKQNRRSFHGLVVKASTVVSPKYTSLKPLGDRVLVKIKTAEEKSVGGILLPVSAQSKPQGGEVVAVGEGHSIGKTTVEISIKNGTHVVYSKYAGTELEFDGSKHLILKEDDIVGILETDDIKDLQPLNDRVLIKVAEVEEKTSGGLFLSQAAKEKPSFGAVIAVGPGPLDEEGKRKALSVSPGNTVLYSKYAGNDFKGADGSEYITLRASDVIAVLQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21683" stop="21426"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYSLSHFFYYFCLWGAAVYPFCSGDYGLVHNYMVLTLSFTLFCLWGSISVVGFWITFRILEFLSMVVLFLLLGFEDIDYFCCGVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21876" stop="21676"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPNNKGAIFIIIVEILEFLSSNLGYFLLLLWYFCCGVLDLVENFMVLICNCSSFCFCWCYSLSLIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="22187" e_stop="22041"/>
            <exon e_start="21411" e_stop="21239"/>
            <exon e_start="20612" e_stop="20433"/>
            <exon e_start="20350" e_stop="20195"/>
            <exon e_start="19796" e_stop="19166"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.000" e_score="0.714"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.824" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.714">
            <gDNA_exon_boundary e_start="22187" e_stop="22041" e_length="147"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22040" i_stop="21412" i_length="629"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21411" e_stop="21239" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="21238" i_stop="20613" i_length="626"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20612" e_stop="20433" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.824" acc_prob="0.905">
            <gDNA_intron_boundary i_start="20432" i_stop="20351" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="20350" e_stop="20195" e_length="156"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20194" i_stop="19797" i_length="398"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="19796" e_stop="19166" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22187" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22155" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22092" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22090" stop="22041"/>
              <exon start="21411" stop="21300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22088" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22086" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22086" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22067" stop="22041"/>
              <exon start="21411" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21274" stop="21239"/>
              <exon start="20612" stop="20433"/>
              <exon start="20350" stop="20195"/>
              <exon start="19796" stop="19755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19786" stop="19166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19785" stop="19274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19785" stop="19275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTCTTAGAAACTTCTAGGGTTTTGTTATCCTTAACAGCTCTACACATTTTATCTACAATAGTCTAAAGTCTAAACACACACCTTCAGTCCATAGTAGAGAAAACCTCTCCATTGCTATTAAGGCTCATCAATTTTGCCAATAAAG : GAATGGCGACAACTCAGCTGACCGCGTCATCCATCTCTGCCAAGGGTTTTGCATCCTTTGAGGGGCTTAGATCCATAAGTAATTTAAAGGTTGCGTCTTTCGCTCCTTTAAAGCAGAATAGAAGGTCGTTCCATGGACTCGTCGTTAAGGCTTCAACAGTTGTATCCCCCAAG : TACACTTCACTCAAACCATTGGGTGATAGAGTTCTGGTGAAGATTAAGACTGCAGAGGAGAAGAGTGTAGGCGGCATCCTGCTTCCAGTATCAGCACAGTCGAAGCCGCAAGGAGGCGAGGTTGTTGCTGTCGGGGAAGGTCATTCAATTGGCAAGACTACGGTGGAGATTAGTATAAAG : AATGGTACCCACGTGGTGTACTCGAAATATGCGGGAACTGAACTGGAGTTTGATGGATCAAAGCACCTGATTTTGAAAGAGGATGACATTGTTGGCATACTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAG : GTGGCTGAAGTTGAGGAAAAAACTTCTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCGCGGTAATAATATGCTCCCTGCAGTTCAGCTAGTATTATTACTCTCATTATACTTGTTGATAGAATATACTTGTTATCTATGTTGCTCAGAATCTTTGAAAATGTCAATGAGTGCCTGTTGAATCCTCTAAGAATAGTATACTTTTAGAGGAATGTCAACGGATGCTTGTCGAACCCTCTAAGAATAGTATATTATTCGAGGACCCCCGACACATGTGCAGCAACATTTTCAAAAAGTACTAGCAAGGTATATATTTATACAGTTTGAAATAACCAATTCCAACATAAAATTGGCATGTGTTGGCTTTATGTAATAATAGCTACATTACATAAAATGTGAAATAAGACTACACGTATTTACAATGCGCTGGGAAGTCTCGTTGCTCTAACTAAAACAAGAACGAAACATATTCTTGCATTATAGTTTCTCATACAACTATCATGTGAGCCAAATGACTTGTGACAGTGAAAGAATTTACACCCTAATCAACATGTAGTTCTCTTTTAGGTGACGTGTTAGTCGAAAACGTTAGTGTATAGAAGTCTTAATTCTTGT</gDNA_template>
            <first_frame> P  S  *  K  L  L  G  F  C  Y  P  *  Q  L  Y  T  F  Y  L  Q  *  S  K  V  *  T  H  T  F  S  P  *  *  R  K  P  L  H  C  Y  *  G  S  S  I  L  P  I  K  :  E  W  R  Q  L  S  *  P  R  H  P  S  L  P  R  V  L  H  P  L  R  G  L  D  P  *  V  I  *  R  L  R  L  S  L  L  *  S  R  I  E  G  R  S  M  D  S  S  L  R  L  Q  Q  L  Y  P  P  S :   T  L  H  S  N  H  W  V  I  E  F  W  *  R  L  R  L  Q  R  R  R  V  *  A  A  S  C  F  Q  Y  Q  H  S  R  S  R  K  E  A  R  L  L  L  S  G  K  V  I  Q  L  A  R  L  R  W  R  L  V  *  R :   M  V  P  T  W  C  T  R  N  M  R  E  L  N  W  S  L  M  D  Q  S  T  *  F  *  K  R  M  T  L  L  A  Y  L  R  Q  M  I  S  R  I  C  S  P  *  M  T  E  F  *  S  R :   W  L  K  L  R  K  K  L  L  G  D  C  F  *  A  R  L  Q  R  R  N  L  H  L  A  R  *  *  Y  A  P  C  S  S  A  S  I  I  T  L  I  I  L  V  D  R  I  Y  L  L  S  M  L  L  R  I  F  E  N  V  N  E  C  L  L  N  P  L  R  I  V  Y  F  *  R  N  V  N  G  C  L  S  N  P  L  R  I  V  Y  Y  S  R  T  P  D  T  C  A  A  T  F  S  K  S  T  S  K  V  Y  I  Y  T  V  *  N  N  Q  F  Q  H  K  I  G  M  C  W  L  Y  V  I  I  A  T  L  H  K  M  *  N  K  T  T  R  I  Y  N  A  L  G  S  L  V  A  L  T  K  T  R  T  K  H  I  L  A  L  *  F  L  I  Q  L  S  C  E  P  N  D  L  *  Q  *  K  N  L  H  P  N  Q  H  V  V  L  F  *  V  T  C  *  S  K  T  L  V  Y  R  S  L  N  S  C </first_frame>
            <second_frame>  P  L  R  N  F  *  G  F  V  I  L  N  S  S  T  H  F  I  Y  N  S  L  K  S  K  H  T  P  S  V  H  S  R  E  N  L  S  I  A  I  K  A  H  Q  F  C  Q  *  R :   N  G  D  N  S  A  D  R  V  I  H  L  C  Q  G  F  C  I  L  *  G  A  *  I  H  K  *  F  K  G  C  V  F  R  S  F  K  A  E  *  K  V  V  P  W  T  R  R  *  G  F  N  S  C  I  P  Q   : V  H  F  T  Q  T  I  G  *  *  S  S  G  E  D  *  D  C  R  G  E  E  C  R  R  H  P  A  S  S  I  S  T  V  E  A  A  R  R  R  G  C  C  C  R  G  R  S  F  N  W  Q  D  Y  G  G  D  *  Y  K   : E  W  Y  P  R  G  V  L  E  I  C  G  N  *  T  G  V  *  W  I  K  A  P  D  F  E  R  G  *  H  C  W  H  T  *  D  R  *  Y  Q  G  S  A  A  L  E  *  Q  S  S  N  Q   : G  G  *  S  *  G  K  N  F  W  G  I  V  F  E  P  G  C  K  G  E  T  F  I  W  R  G  N  N  M  L  P  A  V  Q  L  V  L  L  L  S  L  Y  L  L  I  E  Y  T  C  Y  L  C  C  S  E  S  L  K  M  S  M  S  A  C  *  I  L  *  E  *  Y  T  F  R  G  M  S  T  D  A  C  R  T  L  *  E  *  Y  I  I  R  G  P  P  T  H  V  Q  Q  H  F  Q  K  V  L  A  R  Y  I  F  I  Q  F  E  I  T  N  S  N  I  K  L  A  C  V  G  F  M  *  *  *  L  H  Y  I  K  C  E  I  R  L  H  V  F  T  M  R  W  E  V  S  L  L  *  L  K  Q  E  R  N  I  F  L  H  Y  S  F  S  Y  N  Y  H  V  S  Q  M  T  C  D  S  E  R  I  Y  T  L  I  N  M  *  F  S  F  R  *  R  V  S  R  K  R  *  C  I  E  V  L  I  L   </second_frame>
            <third_frame>   L  L  E  T  S  R  V  L  L  S  L  T  A  L  H  I  L  S  T  I  V  *  S  L  N  T  H  L  Q  S  I  V  E  K  T  S  P  L  L  L  R  L  I  N  F  A  N  K   : G  M  A  T  T  Q  L  T  A  S  S  I  S  A  K  G  F  A  S  F  E  G  L  R  S  I  S  N  L  K  V  A  S  F  A  P  L  K  Q  N  R  R  S  F  H  G  L  V  V  K  A  S  T  V  V  S  P  K  :  Y  T  S  L  K  P  L  G  D  R  V  L  V  K  I  K  T  A  E  E  K  S  V  G  G  I  L  L  P  V  S  A  Q  S  K  P  Q  G  G  E  V  V  A  V  G  E  G  H  S  I  G  K  T  T  V  E  I  S  I  K  :  N  G  T  H  V  V  Y  S  K  Y  A  G  T  E  L  E  F  D  G  S  K  H  L  I  L  K  E  D  D  I  V  G  I  L  E  T  D  D  I  K  D  L  Q  P  L  N  D  R  V  L  I  K  :  V  A  E  V  E  E  K  T  S  G  G  L  F  L  S  Q  A  A  K  E  K  P  S  F  G  A  V  I  I  C  S  L  Q  F  S  *  Y  Y  Y  S  H  Y  T  C  *  *  N  I  L  V  I  Y  V  A  Q  N  L  *  K  C  Q  *  V  P  V  E  S  S  K  N  S  I  L  L  E  E  C  Q  R  M  L  V  E  P  S  K  N  S  I  L  F  E  D  P  R  H  M  C  S  N  I  F  K  K  Y  *  Q  G  I  Y  L  Y  S  L  K  *  P  I  P  T  *  N  W  H  V  L  A  L  C  N  N  S  Y  I  T  *  N  V  K  *  D  Y  T  Y  L  Q  C  A  G  K  S  R  C  S  N  *  N  K  N  E  T  Y  S  C  I  I  V  S  H  T  T  I  M  *  A  K  *  L  V  T  V  K  E  F  T  P  *  S  T  C  S  S  L  L  G  D  V  L  V  E  N  V  S  V  *  K  S  *  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22119" stop="22041"/>
                    <exon start="21411" stop="21239"/>
                    <exon start="20612" stop="20433"/>
                    <exon start="20350" stop="20195"/>
                    <exon start="19796" stop="19689"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLNTHLQSIVEKTSPLLLRLINFANKGMATTQLTASSISAKGFASFEGLRSISNLKVASFAPLKQNRRSFHGLVVKASTVVSPKYTSLKPLGDRVLVKIKTAEEKSVGGILLPVSAQSKPQGGEVVAVGEGHSIGKTTVEISIKNGTHVVYSKYAGTELEFDGSKHLILKEDDIVGILETDDIKDLQPLNDRVLIKVAEVEEKTSGGLFLSQAAKEKPSFGAVIICSLQFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="18815" PGL_stop="19091"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18815" e_stop="19091"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="18815" e_stop="19091" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18815" stop="19091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265217" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACTGGATTCTGCACTAGAAATTGACCATTAATTTGCAAAAGTTTTATTCCAAAATGGTTACAACAATCTCCTCTTTTCTATACTACACTGCAAAATACTGGTATGAGAATGAACTGACTTGTTAAATAAATAACAAAACATTTACTGAAGCACAGCAATTACATCAGATGCCCTCAATGTGATGTATTCAGAACCATCAGCTCCTTTGAAGTCATTGCCAGCATATTTGGAATACAAAACTGTATTTCCAGGAGATACTGAAAGTGCTTTCCTTT</gDNA_template>
            <first_frame> R  L  D  S  A  L  E  I  D  H  *  F  A  K  V  L  F  Q  N  G  Y  N  N  L  L  F  S  I  L  H  C  K  I  L  V  *  E  *  T  D  L  L  N  K  *  Q  N  I  Y  *  S  T  A  I  T  S  D  A  L  N  V  M  Y  S  E  P  S  A  P  L  K  S  L  P  A  Y  L  E  Y  K  T  V  F  P  G  D  T  E  S  A  F  L  </first_frame>
            <second_frame>  D  W  I  L  H  *  K  L  T  I  N  L  Q  K  F  Y  S  K  M  V  T  T  I  S  S  F  L  Y  Y  T  A  K  Y  W  Y  E  N  E  L  T  C  *  I  N  N  K  T  F  T  E  A  Q  Q  L  H  Q  M  P  S  M  *  C  I  Q  N  H  Q  L  L  *  S  H  C  Q  H  I  W  N  T  K  L  Y  F  Q  E  I  L  K  V  L  S  F </second_frame>
            <third_frame>   T  G  F  C  T  R  N  *  P  L  I  C  K  S  F  I  P  K  W  L  Q  Q  S  P  L  F  Y  T  T  L  Q  N  T  G  M  R  M  N  *  L  V  K  *  I  T  K  H  L  L  K  H  S  N  Y  I  R  C  P  Q  C  D  V  F  R  T  I  S  S  F  E  V  I  A  S  I  F  G  I  Q  N  C  I  S  R  R  Y  *  K  C  F  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0032P11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="30454" PGL_stop="31495"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30454" e_stop="31495"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30454" e_stop="31495" e_length="1042"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30454" stop="31080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30454" stop="30961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30455" stop="31093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30455" stop="31037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30461" stop="31176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31171" stop="31487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31172" stop="31495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277650" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGATTCATCAATTTAACTTCAATTTCACAAAAGAAAATTTAAAATTTGATTAAAAATGGTGAAACCCAATTCGAAAGATACTGAATTTTCACAGTCGTCATCGTCGTCGTTGTATCGGGGAGTACGGAAGAGGAAATGGGGGAAATGGGTATCGGAAATTAGATTACCTAATAGTAGAGAAAGGATTTGGTTGGGTTCTTATGATACGCCGGAAAAAGCTGCTAAAGCATTTGACGCCGCACTTTTTTGTTTGCGGGGTAAAGGGGCTAATTTCAATTTCCCGGAAAATCCGCCGGAGATTAGGAACGGAAGGACGATGACTCCGTCGGAGATTCAATCGGCGGCGGCGCAGTTTGCGAATAATACAGAACCCGAACTTATCCGGGTCGGGCCAAGGGAGAATTCGGATCTTTCTTCTTCCTCATCGGAAATATTTCGAGCGGAATCACCGTCGGTGTCAGTTTCCGATAGAGTAGAAAGTGAAAAGACGGAAATAACCTTGGGTAACGATTTTATCGATGTGTATCGGGTGGAGTCTAGAGTGGAAAGTGAAAAGACGGAAATGTCCTTGGATAACGGATTTGTTGACATGTTTTCGTCGTTAGGAACGGTTAATGATATGTCTGATTTTGGAATTTTTCCGGGGTTCGATGACTTATCGGGTGAATTTTTTATACCACCACCATCGTCACCACAACCATCACCACTGCAAATGCCTAATTTGGAATCATTAGAAGAAGAGAATTATTTGAACTATGATGGATTTCAATCACAGGGGACTTCATTTCTTTGGAATTTTTGAAGGATATAAAAATGTTACATTATATTCATTAATGGTTAATAATATAAGTTTATAAAATTAGAAATAGTACTAAAAATTAGTATTAAGTAGGATTAAGAGAACTTATTTGAATTTTAAAACTTCATTTGATGATTTTGTAGACAATTCTAGACATTTTTTTTGGTTGCTAGAATTGTTACAACATATGTGATTTGTACACATAATAAAGAGAATGTATTTTTTGACTAATCGATATGAAA</gDNA_template>
            <first_frame> K  I  H  Q  F  N  F  N  F  T  K  E  N  L  K  F  D  *  K  W  *  N  P  I  R  K  I  L  N  F  H  S  R  H  R  R  R  C  I  G  E  Y  G  R  G  N  G  G  N  G  Y  R  K  L  D  Y  L  I  V  E  K  G  F  G  W  V  L  M  I  R  R  K  K  L  L  K  H  L  T  P  H  F  F  V  C  G  V  K  G  L  I  S  I  S  R  K  I  R  R  R  L  G  T  E  G  R  *  L  R  R  R  F  N  R  R  R  R  S  L  R  I  I  Q  N  P  N  L  S  G  S  G  Q  G  R  I  R  I  F  L  L  P  H  R  K  Y  F  E  R  N  H  R  R  C  Q  F  P  I  E  *  K  V  K  R  R  K  *  P  W  V  T  I  L  S  M  C  I  G  W  S  L  E  W  K  V  K  R  R  K  C  P  W  I  T  D  L  L  T  C  F  R  R  *  E  R  L  M  I  C  L  I  L  E  F  F  R  G  S  M  T  Y  R  V  N  F  L  Y  H  H  H  R  H  H  N  H  H  H  C  K  C  L  I  W  N  H  *  K  K  R  I  I  *  T  M  M  D  F  N  H  R  G  L  H  F  F  G  I  F  E  G  Y  K  N  V  T  L  Y  S  L  M  V  N  N  I  S  L  *  N  *  K  *  Y  *  K  L  V  L  S  R  I  K  R  T  Y  L  N  F  K  T  S  F  D  D  F  V  D  N  S  R  H  F  F  W  L  L  E  L  L  Q  H  M  *  F  V  H  I  I  K  R  M  Y  F  L  T  N  R  Y  E  </first_frame>
            <second_frame>  R  F  I  N  L  T  S  I  S  Q  K  K  I  *  N  L  I  K  N  G  E  T  Q  F  E  R  Y  *  I  F  T  V  V  I  V  V  V  V  S  G  S  T  E  E  E  M  G  E  M  G  I  G  N  *  I  T  *  *  *  R  K  D  L  V  G  F  L  *  Y  A  G  K  S  C  *  S  I  *  R  R  T  F  L  F  A  G  *  R  G  *  F  Q  F  P  G  K  S  A  G  D  *  E  R  K  D  D  D  S  V  G  D  S  I  G  G  G  A  V  C  E  *  Y  R  T  R  T  Y  P  G  R  A  K  G  E  F  G  S  F  F  F  L  I  G  N  I  S  S  G  I  T  V  G  V  S  F  R  *  S  R  K  *  K  D  G  N  N  L  G  *  R  F  Y  R  C  V  S  G  G  V  *  S  G  K  *  K  D  G  N  V  L  G  *  R  I  C  *  H  V  F  V  V  R  N  G  *  *  Y  V  *  F  W  N  F  S  G  V  R  *  L  I  G  *  I  F  Y  T  T  T  I  V  T  T  T  I  T  T  A  N  A  *  F  G  I  I  R  R  R  E  L  F  E  L  *  W  I  S  I  T  G  D  F  I  S  L  E  F  L  K  D  I  K  M  L  H  Y  I  H  *  W  L  I  I  *  V  Y  K  I  R  N  S  T  K  N  *  Y  *  V  G  L  R  E  L  I  *  I  L  K  L  H  L  M  I  L  *  T  I  L  D  I  F  F  G  C  *  N  C  Y  N  I  C  D  L  Y  T  *  *  R  E  C  I  F  *  L  I  D  M  K </second_frame>
            <third_frame>   D  S  S  I  *  L  Q  F  H  K  R  K  F  K  I  *  L  K  M  V  K  P  N  S  K  D  T  E  F  S  Q  S  S  S  S  S  L  Y  R  G  V  R  K  R  K  W  G  K  W  V  S  E  I  R  L  P  N  S  R  E  R  I  W  L  G  S  Y  D  T  P  E  K  A  A  K  A  F  D  A  A  L  F  C  L  R  G  K  G  A  N  F  N  F  P  E  N  P  P  E  I  R  N  G  R  T  M  T  P  S  E  I  Q  S  A  A  A  Q  F  A  N  N  T  E  P  E  L  I  R  V  G  P  R  E  N  S  D  L  S  S  S  S  S  E  I  F  R  A  E  S  P  S  V  S  V  S  D  R  V  E  S  E  K  T  E  I  T  L  G  N  D  F  I  D  V  Y  R  V  E  S  R  V  E  S  E  K  T  E  M  S  L  D  N  G  F  V  D  M  F  S  S  L  G  T  V  N  D  M  S  D  F  G  I  F  P  G  F  D  D  L  S  G  E  F  F  I  P  P  P  S  S  P  Q  P  S  P  L  Q  M  P  N  L  E  S  L  E  E  E  N  Y  L  N  Y  D  G  F  Q  S  Q  G  T  S  F  L  W  N  F  *  R  I  *  K  C  Y  I  I  F  I  N  G  *  *  Y  K  F  I  K  L  E  I  V  L  K  I  S  I  K  *  D  *  E  N  L  F  E  F  *  N  F  I  *  *  F  C  R  Q  F  *  T  F  F  L  V  A  R  I  V  T  T  Y  V  I  C  T  H  N  K  E  N  V  F  F  D  *  S  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30504" stop="31256"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKMVKPNSKDTEFSQSSSSSLYRGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAAKAFDAALFCLRGKGANFNFPENPPEIRNGRTMTPSEIQSAAAQFANNTEPELIRVGPRENSDLSSSSSEIFRAESPSVSVSDRVESEKTEITLGNDFIDVYRVESRVESEKTEMSLDNGFVDMFSSLGTVNDMSDFGIFPGFDDLSGEFFIPPPSSPQPSPLQMPNLESLEEENYLNYDGFQSQGTSFLWNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="32307" PGL_stop="31171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32307" e_stop="32290"/>
            <exon e_start="31499" e_stop="31171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.438" acc_prob="0.000" e_score="0.556"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.556">
            <gDNA_exon_boundary e_start="32307" e_stop="32290" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.438" acc_prob="0.000">
            <gDNA_intron_boundary i_start="32289" i_stop="31500" i_length="790"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="31499" e_stop="31171" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32307" stop="32290"/>
              <exon start="31499" stop="31171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548161" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTGCTCAAGTATTTT : TGATTTTCATATCGATTAGTCAAAAAATACATTCTCTTTATTATGTGTACAAATCACATATGTTGTAACAATTCTAGCAACCAAAAAAAATGTCTAGAATTGTCTACAAAATCATCAAATGAAGTTTTAAAATTCAAATAAGTTCTCTTAATCCTACTTAATACTAATTTTTAGTACTATTTCTAATTTTATAAACTTATATTATTAACCATTAATGAATATAATGTAACATTTTTATATCCTTCAAAAATTCCAAAGAAATGAAGTCCCCTGTGATTGAAATCCATCATAGTTCAAATAATTCTCTTCTTCTAATGATTCCAAATTAG</gDNA_template>
            <first_frame> F  L  L  K  Y  F  :  *  F  S  Y  R  L  V  K  K  Y  I  L  F  I  M  C  T  N  H  I  C  C  N  N  S  S  N  Q  K  K  C  L  E  L  S  T  K  S  S  N  E  V  L  K  F  K  *  V  L  L  I  L  L  N  T  N  F  *  Y  Y  F  *  F  Y  K  L  I  L  L  T  I  N  E  Y  N  V  T  F  L  Y  P  S  K  I  P  K  K  *  S  P  L  *  L  K  S  I  I  V  Q  I  I  L  F  F  *  *  F  Q  I   </first_frame>
            <second_frame>  F  C  S  S  I  F :   D  F  H  I  D  *  S  K  N  T  F  S  L  L  C  V  Q  I  T  Y  V  V  T  I  L  A  T  K  K  N  V  *  N  C  L  Q  N  H  Q  M  K  F  *  N  S  N  K  F  S  *  S  Y  L  I  L  I  F  S  T  I  S  N  F  I  N  L  Y  Y  *  P  L  M  N  I  M  *  H  F  Y  I  L  Q  K  F  Q  R  N  E  V  P  C  D  *  N  P  S  *  F  K  *  F  S  S  S  N  D  S  K  L  </second_frame>
            <third_frame>   F  A  Q  V  F   : L  I  F  I  S  I  S  Q  K  I  H  S  L  Y  Y  V  Y  K  S  H  M  L  *  Q  F  *  Q  P  K  K  M  S  R  I  V  Y  K  I  I  K  *  S  F  K  I  Q  I  S  S  L  N  P  T  *  Y  *  F  L  V  L  F  L  I  L  *  T  Y  I  I  N  H  *  *  I  *  C  N  I  F  I  S  F  K  N  S  K  E  M  K  S  P  V  I  E  I  H  H  S  S  N  N  S  L  L  L  M  I  P  N  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0032P11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="34739" PGL_stop="40956"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37101" e_stop="37149"/>
            <exon e_start="37350" e_stop="37452"/>
            <exon e_start="38133" e_stop="38209"/>
            <exon e_start="38284" e_stop="38345"/>
            <exon e_start="38433" e_stop="38520"/>
            <exon e_start="38625" e_stop="38700"/>
            <exon e_start="38809" e_stop="38839"/>
            <exon e_start="39564" e_stop="39683"/>
            <exon e_start="40050" e_stop="40135"/>
            <exon e_start="40244" e_stop="40417"/>
            <exon e_start="40507" e_stop="40956"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.980"/>
          <exon-intron don_prob="0.996" acc_prob="0.927" e_score="0.990"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="0.971"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="37101" e_stop="37149" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="37150" i_stop="37349" i_length="200"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="37350" e_stop="37452" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.927">
            <gDNA_intron_boundary i_start="37453" i_stop="38132" i_length="680"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38133" e_stop="38209" e_length="77"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="38210" i_stop="38283" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38284" e_stop="38345" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38346" i_stop="38432" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38433" e_stop="38520" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.875" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38521" i_stop="38624" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38625" e_stop="38700" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38701" i_stop="38808" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38809" e_stop="38839" e_length="31"/>
          </exon>
          <intron i_serial="7" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38840" i_stop="39563" i_length="724"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="39564" e_stop="39683" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.849" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39684" i_stop="40049" i_length="366"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="40050" e_stop="40135" e_length="86"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.911">
            <gDNA_intron_boundary i_start="40136" i_stop="40243" i_length="108"/>
          </intron>
          <exon e_serial="10" e_score="0.971">
            <gDNA_exon_boundary e_start="40244" e_stop="40417" e_length="174"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="40418" i_stop="40506" i_length="89"/>
          </intron>
          <exon e_serial="11" e_score="0.953">
            <gDNA_exon_boundary e_start="40507" e_stop="40956" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37101" stop="37149"/>
              <exon start="37350" stop="37452"/>
              <exon start="38133" stop="38209"/>
              <exon start="38284" stop="38345"/>
              <exon start="38433" stop="38520"/>
              <exon start="38625" stop="38700"/>
              <exon start="38809" stop="38839"/>
              <exon start="39564" stop="39683"/>
              <exon start="40050" stop="40135"/>
              <exon start="40244" stop="40369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37102" stop="37149"/>
              <exon start="37350" stop="37452"/>
              <exon start="38133" stop="38209"/>
              <exon start="38284" stop="38345"/>
              <exon start="38433" stop="38520"/>
              <exon start="38625" stop="38647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37383" stop="37452"/>
              <exon start="38133" stop="38209"/>
              <exon start="38284" stop="38345"/>
              <exon start="38433" stop="38520"/>
              <exon start="38625" stop="38700"/>
              <exon start="38809" stop="38839"/>
              <exon start="39564" stop="39683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38156" stop="38209"/>
              <exon start="38284" stop="38345"/>
              <exon start="38433" stop="38520"/>
              <exon start="38625" stop="38700"/>
              <exon start="38809" stop="38839"/>
              <exon start="39564" stop="39683"/>
              <exon start="40050" stop="40135"/>
              <exon start="40244" stop="40287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38447" stop="38520"/>
              <exon start="38625" stop="38700"/>
              <exon start="38809" stop="38839"/>
              <exon start="39564" stop="39683"/>
              <exon start="40050" stop="40135"/>
              <exon start="40244" stop="40272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39564" stop="39683"/>
              <exon start="40050" stop="40135"/>
              <exon start="40244" stop="40417"/>
              <exon start="40507" stop="40956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549342" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCATCGTTCCAAATTGCTGCTGCTTGGAAATAGAAAATGCCATTCTG : GTATGTTGGAAACATCAGTTCTCAAGTCACGGAACAACTTCTTCAAGAGGTTTTCTCAAGTACCGGTCCCCTTGAGGGTTGTAAGCTTATAAGGAAGGACAAG : TCGTCCTATGGGTTTGTGGATTATTTTGATCGCCAATCAGCTGCGCTTGCTATTGTGAGCCTCAATGGAAGGCAATT : GTTTGGACAGTGTATAAAAGTTAACTGGGCTTATGCCAGTGCTAAAAGAGAGGACACATCAA : ATCATTTTAGCATATTTGTTGGTGATCTTAGTCCGGAGGTTACAGATTCCACACTGTTTGCGTGCTTTTCAGTATACCCTAGCTGCTC : AGATGCAAGAGTGATGTGGGATCAGAAAATAGGCCGGTCTAGAGGGTTTGGGTTTGTTTCCTTTCGTGATCAGCAG : GAAGCCCAAAGTGCAATAGATGACTTGAATG : GAAAGTGGCTTGGAAGCCGACAAATCCGCTGCAACTGGGCAGCAAAAGGTGCTGGAGCCAGTAATGACAACCGGAGTTCAGATGCTAAAAGTGCTGTTGAGTTGACAACTGGAACATCAG : ATGATGGTCAACTGAAGGCCAACGAAGACGCTCCAGAAAATAATCCGCAGTACACAACTGTATATGTTGGCAACCTTGCTCCTGAT : GTCACTACCATTGACCTCCATCGTTATTTTCATGCTCTTGGGGCTGGTGTTATTGCTGATGTCCGTATTCAGCGAGACAGAGGATTTGGCTTTGTACGATACAGCAATCATGCTGAAGCAGCTCGAGCAATTCAATTAGGAAATGCTCGAATCCTCTTTGGTAAACCTATTAAG : TGCTCATGGGGAAGCAAGCCAACTCCACCAGGAAGCAGCACGAACCCTCTACCACCTCCTGTTATCAGACAACTCCCTGGTATTTCAGCCATGGGTCTTGCGATGTACGAGAGGCAGGTTGCTTTGGCTAGGATGACTGGTATGCAGACTCTCATGCAACACCAGGGACAGCGAATTGGCGTTGCTAGTCAGGTTCTGTATGATGGTGGCATTGCTTCCCCGCAGCCACCGGTATACTACTAGTTGTTGATTCAATAAAAACTTGTAAACACCTGTTGTTGTTAGTTCTCTGTGCTATTTTAAGTGATAGAATCCTCCTCTCTTTTTTTTTATCTATTGTTAGTTTTCTTTAGCTTCCTTTAATACCATCAGACAGAATGTATTGGATATGTAGTCTGTATTCTGTTTGAGAATGAAAGTTATAATATCTCTTTGGAAATACAATCACTT</gDNA_template>
            <first_frame> N  H  R  S  K  L  L  L  L  G  N  R  K  C  H  S   : G  M  L  E  T  S  V  L  K  S  R  N  N  F  F  K  R  F  S  Q  V  P  V  P  L  R  V  V  S  L  *  G  R  T  S :   R  P  M  G  L  W  I  I  L  I  A  N  Q  L  R  L  L  L  *  A  S  M  E  G  N   : C  L  D  S  V  *  K  L  T  G  L  M  P  V  L  K  E  R  T  H  Q  :  I  I  L  A  Y  L  L  V  I  L  V  R  R  L  Q  I  P  H  C  L  R  A  F  Q  Y  T  L  A  A   : Q  M  Q  E  *  C  G  I  R  K  *  A  G  L  E  G  L  G  L  F  P  F  V  I  S  R :   K  P  K  V  Q  *  M  T  *  M  :  E  S  G  L  E  A  D  K  S  A  A  T  G  Q  Q  K  V  L  E  P  V  M  T  T  G  V  Q  M  L  K  V  L  L  S  *  Q  L  E  H  Q  :  M  M  V  N  *  R  P  T  K  T  L  Q  K  I  I  R  S  T  Q  L  Y  M  L  A  T  L  L  L  M :   S  L  P  L  T  S  I  V  I  F  M  L  L  G  L  V  L  L  L  M  S  V  F  S  E  T  E  D  L  A  L  Y  D  T  A  I  M  L  K  Q  L  E  Q  F  N  *  E  M  L  E  S  S  L  V  N  L  L  S :   A  H  G  E  A  S  Q  L  H  Q  E  A  A  R  T  L  Y  H  L  L  L  S  D  N  S  L  V  F  Q  P  W  V  L  R  C  T  R  G  R  L  L  W  L  G  *  L  V  C  R  L  S  C  N  T  R  D  S  E  L  A  L  L  V  R  F  C  M  M  V  A  L  L  P  R  S  H  R  Y  T  T  S  C  *  F  N  K  N  L  *  T  P  V  V  V  S  S  L  C  Y  F  K  *  *  N  P  P  L  F  F  F  I  Y  C  *  F  S  L  A  S  F  N  T  I  R  Q  N  V  L  D  M  *  S  V  F  C  L  R  M  K  V  I  I  S  L  W  K  Y  N  H   </first_frame>
            <second_frame>  I  I  V  P  N  C  C  C  L  E  I  E  N  A  I  L  :  V  C  W  K  H  Q  F  S  S  H  G  T  T  S  S  R  G  F  L  K  Y  R  S  P  *  G  L  *  A  Y  K  E  G  Q   : V  V  L  W  V  C  G  L  F  *  S  P  I  S  C  A  C  Y  C  E  P  Q  W  K  A  I  :  V  W  T  V  Y  K  S  *  L  G  L  C  Q  C  *  K  R  G  H  I  K :   S  F  *  H  I  C  W  *  S  *  S  G  G  Y  R  F  H  T  V  C  V  L  F  S  I  P  *  L  L  :  R  C  K  S  D  V  G  S  E  N  R  P  V  *  R  V  W  V  C  F  L  S  *  S  A   : G  S  P  K  C  N  R  *  L  E  W :   K  V  A  W  K  P  T  N  P  L  Q  L  G  S  K  R  C  W  S  Q  *  *  Q  P  E  F  R  C  *  K  C  C  *  V  D  N  W  N  I  R :   *  W  S  T  E  G  Q  R  R  R  S  R  K  *  S  A  V  H  N  C  I  C  W  Q  P  C  S  *   : C  H  Y  H  *  P  P  S  L  F  S  C  S  W  G  W  C  Y  C  *  C  P  Y  S  A  R  Q  R  I  W  L  C  T  I  Q  Q  S  C  *  S  S  S  S  N  S  I  R  K  C  S  N  P  L  W  *  T  Y  *   : V  L  M  G  K  Q  A  N  S  T  R  K  Q  H  E  P  S  T  T  S  C  Y  Q  T  T  P  W  Y  F  S  H  G  S  C  D  V  R  E  A  G  C  F  G  *  D  D  W  Y  A  D  S  H  A  T  P  G  T  A  N  W  R  C  *  S  G  S  V  *  W  W  H  C  F  P  A  A  T  G  I  L  L  V  V  D  S  I  K  T  C  K  H  L  L  L  L  V  L  C  A  I  L  S  D  R  I  L  L  S  F  F  L  S  I  V  S  F  L  *  L  P  L  I  P  S  D  R  M  Y  W  I  C  S  L  Y  S  V  *  E  *  K  L  *  Y  L  F  G  N  T  I  T  </second_frame>
            <third_frame>   S  S  F  Q  I  A  A  A  W  K  *  K  M  P  F  W :   Y  V  G  N  I  S  S  Q  V  T  E  Q  L  L  Q  E  V  F  S  S  T  G  P  L  E  G  C  K  L  I  R  K  D  K  :  S  S  Y  G  F  V  D  Y  F  D  R  Q  S  A  A  L  A  I  V  S  L  N  G  R  Q  L :   F  G  Q  C  I  K  V  N  W  A  Y  A  S  A  K  R  E  D  T  S   : N  H  F  S  I  F  V  G  D  L  S  P  E  V  T  D  S  T  L  F  A  C  F  S  V  Y  P  S  C  S :   D  A  R  V  M  W  D  Q  K  I  G  R  S  R  G  F  G  F  V  S  F  R  D  Q  Q  :  E  A  Q  S  A  I  D  D  L  N   : G  K  W  L  G  S  R  Q  I  R  C  N  W  A  A  K  G  A  G  A  S  N  D  N  R  S  S  D  A  K  S  A  V  E  L  T  T  G  T  S   : D  D  G  Q  L  K  A  N  E  D  A  P  E  N  N  P  Q  Y  T  T  V  Y  V  G  N  L  A  P  D  :  V  T  T  I  D  L  H  R  Y  F  H  A  L  G  A  G  V  I  A  D  V  R  I  Q  R  D  R  G  F  G  F  V  R  Y  S  N  H  A  E  A  A  R  A  I  Q  L  G  N  A  R  I  L  F  G  K  P  I  K  :  C  S  W  G  S  K  P  T  P  P  G  S  S  T  N  P  L  P  P  P  V  I  R  Q  L  P  G  I  S  A  M  G  L  A  M  Y  E  R  Q  V  A  L  A  R  M  T  G  M  Q  T  L  M  Q  H  Q  G  Q  R  I  G  V  A  S  Q  V  L  Y  D  G  G  I  A  S  P  Q  P  P  V  Y  Y  *  L  L  I  Q  *  K  L  V  N  T  C  C  C  *  F  S  V  L  F  *  V  I  E  S  S  S  L  F  F  Y  L  L  L  V  F  F  S  F  L  *  Y  H  Q  T  E  C  I  G  Y  V  V  C  I  L  F  E  N  E  S  Y  N  I  S  L  E  I  Q  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37136" stop="37149"/>
                    <exon start="37350" stop="37452"/>
                    <exon start="38133" stop="38209"/>
                    <exon start="38284" stop="38345"/>
                    <exon start="38433" stop="38520"/>
                    <exon start="38625" stop="38700"/>
                    <exon start="38809" stop="38839"/>
                    <exon start="39564" stop="39683"/>
                    <exon start="40050" stop="40135"/>
                    <exon start="40244" stop="40417"/>
                    <exon start="40507" stop="40749"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1071</number_coding_nucleotides>
                  <number_encoded_amino_acids>357</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMPFWYVGNISSQVTEQLLQEVFSSTGPLEGCKLIRKDKSSYGFVDYFDRQSAALAIVSLNGRQLFGQCIKVNWAYASAKREDTSNHFSIFVGDLSPEVTDSTLFACFSVYPSCSDARVMWDQKIGRSRGFGFVSFRDQQEAQSAIDDLNGKWLGSRQIRCNWAAKGAGASNDNRSSDAKSAVELTTGTSDDGQLKANEDAPENNPQYTTVYVGNLAPDVTTIDLHRYFHALGAGVIADVRIQRDRGFGFVRYSNHAEAARAIQLGNARILFGKPIKCSWGSKPTPPGSSTNPLPPPVIRQLPGISAMGLAMYERQVALARMTGMQTLMQHQGQRIGVASQVLYDGGIASPQPPVYY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="34739" e_stop="34972"/>
            <exon e_start="36524" e_stop="36585"/>
            <exon e_start="37350" e_stop="37452"/>
            <exon e_start="38133" e_stop="38209"/>
            <exon e_start="38284" e_stop="38345"/>
            <exon e_start="38433" e_stop="38520"/>
            <exon e_start="38625" e_stop="38700"/>
            <exon e_start="38809" e_stop="38839"/>
            <exon e_start="39564" e_stop="39683"/>
            <exon e_start="40050" e_stop="40135"/>
            <exon e_start="40244" e_stop="40417"/>
            <exon e_start="40507" e_stop="40956"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="0.966"/>
          <exon-intron don_prob="0.912" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="0.971"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="34739" e_stop="34972" e_length="234"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="34973" i_stop="36523" i_length="1551"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36524" e_stop="36585" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.912" acc_prob="0.996">
            <gDNA_intron_boundary i_start="36586" i_stop="37349" i_length="764"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37350" e_stop="37452" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.927">
            <gDNA_intron_boundary i_start="37453" i_stop="38132" i_length="680"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38133" e_stop="38209" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="38210" i_stop="38283" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38284" e_stop="38345" e_length="62"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38346" i_stop="38432" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38433" e_stop="38520" e_length="88"/>
          </exon>
          <intron i_serial="6" don_prob="0.875" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38521" i_stop="38624" i_length="104"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38625" e_stop="38700" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38701" i_stop="38808" i_length="108"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="38809" e_stop="38839" e_length="31"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38840" i_stop="39563" i_length="724"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="39564" e_stop="39683" e_length="120"/>
          </exon>
          <intron i_serial="9" don_prob="0.849" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39684" i_stop="40049" i_length="366"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="40050" e_stop="40135" e_length="86"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.911">
            <gDNA_intron_boundary i_start="40136" i_stop="40243" i_length="108"/>
          </intron>
          <exon e_serial="11" e_score="0.971">
            <gDNA_exon_boundary e_start="40244" e_stop="40417" e_length="174"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="40418" i_stop="40506" i_length="89"/>
          </intron>
          <exon e_serial="12" e_score="0.953">
            <gDNA_exon_boundary e_start="40507" e_stop="40956" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34739" stop="34972"/>
              <exon start="36524" stop="36585"/>
              <exon start="37350" stop="37452"/>
              <exon start="38133" stop="38209"/>
              <exon start="38284" stop="38345"/>
              <exon start="38433" stop="38500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37383" stop="37452"/>
              <exon start="38133" stop="38209"/>
              <exon start="38284" stop="38345"/>
              <exon start="38433" stop="38520"/>
              <exon start="38625" stop="38700"/>
              <exon start="38809" stop="38839"/>
              <exon start="39564" stop="39683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38156" stop="38209"/>
              <exon start="38284" stop="38345"/>
              <exon start="38433" stop="38520"/>
              <exon start="38625" stop="38700"/>
              <exon start="38809" stop="38839"/>
              <exon start="39564" stop="39683"/>
              <exon start="40050" stop="40135"/>
              <exon start="40244" stop="40287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38447" stop="38520"/>
              <exon start="38625" stop="38700"/>
              <exon start="38809" stop="38839"/>
              <exon start="39564" stop="39683"/>
              <exon start="40050" stop="40135"/>
              <exon start="40244" stop="40272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39564" stop="39683"/>
              <exon start="40050" stop="40135"/>
              <exon start="40244" stop="40417"/>
              <exon start="40507" stop="40956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549342" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTTTCTTTTCTTCTTTTTTTTTTTTTCCAATTTTTTTTCTTTGATTTTTCTTGATTTCAATCAAAACCCTAATTACCCTTTCAATTTTGTTATCTTTTTTTATTTTTTTTCAATTTAAAGTTTGCATTTTTTTTTTTTTTGGTTGAAGATGATGCAACAGCAAAGGCTGAAACAACAGCAAGGATTGATGCAACAATCCCTTTATCATCCTGGTCTCATAGCATCCCCTCAG : ATAGAGCCCATCTTGAGTGGAAATCTGCCTCCTGGATTTGATTCAACTACTTGCAGGAGTGT : GTATGTTGGAAACATCAGTTCTCAAGTCACGGAACAACTTCTTCAAGAGGTTTTCTCAAGTACCGGTCCCCTTGAGGGTTGTAAGCTTATAAGGAAGGACAAG : TCGTCCTATGGGTTTGTGGATTATTTTGATCGCCAATCAGCTGCGCTTGCTATTGTGAGCCTCAATGGAAGGCAATT : GTTTGGACAGTGTATAAAAGTTAACTGGGCTTATGCCAGTGCTAAAAGAGAGGACACATCAA : ATCATTTTAGCATATTTGTTGGTGATCTTAGTCCGGAGGTTACAGATTCCACACTGTTTGCGTGCTTTTCAGTATACCCTAGCTGCTC : AGATGCAAGAGTGATGTGGGATCAGAAAATAGGCCGGTCTAGAGGGTTTGGGTTTGTTTCCTTTCGTGATCAGCAG : GAAGCCCAAAGTGCAATAGATGACTTGAATG : GAAAGTGGCTTGGAAGCCGACAAATCCGCTGCAACTGGGCAGCAAAAGGTGCTGGAGCCAGTAATGACAACCGGAGTTCAGATGCTAAAAGTGCTGTTGAGTTGACAACTGGAACATCAG : ATGATGGTCAACTGAAGGCCAACGAAGACGCTCCAGAAAATAATCCGCAGTACACAACTGTATATGTTGGCAACCTTGCTCCTGAT : GTCACTACCATTGACCTCCATCGTTATTTTCATGCTCTTGGGGCTGGTGTTATTGCTGATGTCCGTATTCAGCGAGACAGAGGATTTGGCTTTGTACGATACAGCAATCATGCTGAAGCAGCTCGAGCAATTCAATTAGGAAATGCTCGAATCCTCTTTGGTAAACCTATTAAG : TGCTCATGGGGAAGCAAGCCAACTCCACCAGGAAGCAGCACGAACCCTCTACCACCTCCTGTTATCAGACAACTCCCTGGTATTTCAGCCATGGGTCTTGCGATGTACGAGAGGCAGGTTGCTTTGGCTAGGATGACTGGTATGCAGACTCTCATGCAACACCAGGGACAGCGAATTGGCGTTGCTAGTCAGGTTCTGTATGATGGTGGCATTGCTTCCCCGCAGCCACCGGTATACTACTAGTTGTTGATTCAATAAAAACTTGTAAACACCTGTTGTTGTTAGTTCTCTGTGCTATTTTAAGTGATAGAATCCTCCTCTCTTTTTTTTTATCTATTGTTAGTTTTCTTTAGCTTCCTTTAATACCATCAGACAGAATGTATTGGATATGTAGTCTGTATTCTGTTTGAGAATGAAAGTTATAATATCTCTTTGGAAATACAATCACTT</gDNA_template>
            <first_frame> G  F  L  F  F  F  F  F  F  S  N  F  F  S  L  I  F  L  D  F  N  Q  N  P  N  Y  P  F  N  F  V  I  F  F  Y  F  F  S  I  *  S  L  H  F  F  F  F  W  L  K  M  M  Q  Q  Q  R  L  K  Q  Q  Q  G  L  M  Q  Q  S  L  Y  H  P  G  L  I  A  S  P  Q  :  I  E  P  I  L  S  G  N  L  P  P  G  F  D  S  T  T  C  R  S  V :   Y  V  G  N  I  S  S  Q  V  T  E  Q  L  L  Q  E  V  F  S  S  T  G  P  L  E  G  C  K  L  I  R  K  D  K  :  S  S  Y  G  F  V  D  Y  F  D  R  Q  S  A  A  L  A  I  V  S  L  N  G  R  Q  L :   F  G  Q  C  I  K  V  N  W  A  Y  A  S  A  K  R  E  D  T  S   : N  H  F  S  I  F  V  G  D  L  S  P  E  V  T  D  S  T  L  F  A  C  F  S  V  Y  P  S  C  S :   D  A  R  V  M  W  D  Q  K  I  G  R  S  R  G  F  G  F  V  S  F  R  D  Q  Q  :  E  A  Q  S  A  I  D  D  L  N   : G  K  W  L  G  S  R  Q  I  R  C  N  W  A  A  K  G  A  G  A  S  N  D  N  R  S  S  D  A  K  S  A  V  E  L  T  T  G  T  S   : D  D  G  Q  L  K  A  N  E  D  A  P  E  N  N  P  Q  Y  T  T  V  Y  V  G  N  L  A  P  D  :  V  T  T  I  D  L  H  R  Y  F  H  A  L  G  A  G  V  I  A  D  V  R  I  Q  R  D  R  G  F  G  F  V  R  Y  S  N  H  A  E  A  A  R  A  I  Q  L  G  N  A  R  I  L  F  G  K  P  I  K  :  C  S  W  G  S  K  P  T  P  P  G  S  S  T  N  P  L  P  P  P  V  I  R  Q  L  P  G  I  S  A  M  G  L  A  M  Y  E  R  Q  V  A  L  A  R  M  T  G  M  Q  T  L  M  Q  H  Q  G  Q  R  I  G  V  A  S  Q  V  L  Y  D  G  G  I  A  S  P  Q  P  P  V  Y  Y  *  L  L  I  Q  *  K  L  V  N  T  C  C  C  *  F  S  V  L  F  *  V  I  E  S  S  S  L  F  F  Y  L  L  L  V  F  F  S  F  L  *  Y  H  Q  T  E  C  I  G  Y  V  V  C  I  L  F  E  N  E  S  Y  N  I  S  L  E  I  Q  S  L </first_frame>
            <second_frame>  V  F  F  S  S  F  F  F  F  P  I  F  F  L  *  F  F  L  I  S  I  K  T  L  I  T  L  S  I  L  L  S  F  F  I  F  F  Q  F  K  V  C  I  F  F  F  F  G  *  R  *  C  N  S  K  G  *  N  N  S  K  D  *  C  N  N  P  F  I  I  L  V  S  *  H  P  L  R :   *  S  P  S  *  V  E  I  C  L  L  D  L  I  Q  L  L  A  G  V   : C  M  L  E  T  S  V  L  K  S  R  N  N  F  F  K  R  F  S  Q  V  P  V  P  L  R  V  V  S  L  *  G  R  T  S :   R  P  M  G  L  W  I  I  L  I  A  N  Q  L  R  L  L  L  *  A  S  M  E  G  N   : C  L  D  S  V  *  K  L  T  G  L  M  P  V  L  K  E  R  T  H  Q  :  I  I  L  A  Y  L  L  V  I  L  V  R  R  L  Q  I  P  H  C  L  R  A  F  Q  Y  T  L  A  A   : Q  M  Q  E  *  C  G  I  R  K  *  A  G  L  E  G  L  G  L  F  P  F  V  I  S  R :   K  P  K  V  Q  *  M  T  *  M  :  E  S  G  L  E  A  D  K  S  A  A  T  G  Q  Q  K  V  L  E  P  V  M  T  T  G  V  Q  M  L  K  V  L  L  S  *  Q  L  E  H  Q  :  M  M  V  N  *  R  P  T  K  T  L  Q  K  I  I  R  S  T  Q  L  Y  M  L  A  T  L  L  L  M :   S  L  P  L  T  S  I  V  I  F  M  L  L  G  L  V  L  L  L  M  S  V  F  S  E  T  E  D  L  A  L  Y  D  T  A  I  M  L  K  Q  L  E  Q  F  N  *  E  M  L  E  S  S  L  V  N  L  L  S :   A  H  G  E  A  S  Q  L  H  Q  E  A  A  R  T  L  Y  H  L  L  L  S  D  N  S  L  V  F  Q  P  W  V  L  R  C  T  R  G  R  L  L  W  L  G  *  L  V  C  R  L  S  C  N  T  R  D  S  E  L  A  L  L  V  R  F  C  M  M  V  A  L  L  P  R  S  H  R  Y  T  T  S  C  *  F  N  K  N  L  *  T  P  V  V  V  S  S  L  C  Y  F  K  *  *  N  P  P  L  F  F  F  I  Y  C  *  F  S  L  A  S  F  N  T  I  R  Q  N  V  L  D  M  *  S  V  F  C  L  R  M  K  V  I  I  S  L  W  K  Y  N  H   </second_frame>
            <third_frame>   F  S  F  L  L  F  F  F  F  Q  F  F  F  F  D  F  S  *  F  Q  S  K  P  *  L  P  F  Q  F  C  Y  L  F  L  F  F  F  N  L  K  F  A  F  F  F  F  L  V  E  D  D  A  T  A  K  A  E  T  T  A  R  I  D  A  T  I  P  L  S  S  W  S  H  S  I  P  S   : D  R  A  H  L  E  W  K  S  A  S  W  I  *  F  N  Y  L  Q  E  C  :  V  C  W  K  H  Q  F  S  S  H  G  T  T  S  S  R  G  F  L  K  Y  R  S  P  *  G  L  *  A  Y  K  E  G  Q   : V  V  L  W  V  C  G  L  F  *  S  P  I  S  C  A  C  Y  C  E  P  Q  W  K  A  I  :  V  W  T  V  Y  K  S  *  L  G  L  C  Q  C  *  K  R  G  H  I  K :   S  F  *  H  I  C  W  *  S  *  S  G  G  Y  R  F  H  T  V  C  V  L  F  S  I  P  *  L  L  :  R  C  K  S  D  V  G  S  E  N  R  P  V  *  R  V  W  V  C  F  L  S  *  S  A   : G  S  P  K  C  N  R  *  L  E  W :   K  V  A  W  K  P  T  N  P  L  Q  L  G  S  K  R  C  W  S  Q  *  *  Q  P  E  F  R  C  *  K  C  C  *  V  D  N  W  N  I  R :   *  W  S  T  E  G  Q  R  R  R  S  R  K  *  S  A  V  H  N  C  I  C  W  Q  P  C  S  *   : C  H  Y  H  *  P  P  S  L  F  S  C  S  W  G  W  C  Y  C  *  C  P  Y  S  A  R  Q  R  I  W  L  C  T  I  Q  Q  S  C  *  S  S  S  S  N  S  I  R  K  C  S  N  P  L  W  *  T  Y  *   : V  L  M  G  K  Q  A  N  S  T  R  K  Q  H  E  P  S  T  T  S  C  Y  Q  T  T  P  W  Y  F  S  H  G  S  C  D  V  R  E  A  G  C  F  G  *  D  D  W  Y  A  D  S  H  A  T  P  G  T  A  N  W  R  C  *  S  G  S  V  *  W  W  H  C  F  P  A  A  T  G  I  L  L  V  V  D  S  I  K  T  C  K  H  L  L  L  L  V  L  C  A  I  L  S  D  R  I  L  L  S  F  F  L  S  I  V  S  F  L  *  L  P  L  I  P  S  D  R  M  Y  W  I  C  S  L  Y  S  V  *  E  *  K  L  *  Y  L  F  G  N  T  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34859" stop="34972"/>
                    <exon start="36524" stop="36585"/>
                    <exon start="37350" stop="37452"/>
                    <exon start="38133" stop="38209"/>
                    <exon start="38284" stop="38345"/>
                    <exon start="38433" stop="38520"/>
                    <exon start="38625" stop="38700"/>
                    <exon start="38809" stop="38839"/>
                    <exon start="39564" stop="39683"/>
                    <exon start="40050" stop="40135"/>
                    <exon start="40244" stop="40417"/>
                    <exon start="40507" stop="40749"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1233</number_coding_nucleotides>
                  <number_encoded_amino_acids>411</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLHFFFFWLKMMQQQRLKQQQGLMQQSLYHPGLIASPQIEPILSGNLPPGFDSTTCRSVYVGNISSQVTEQLLQEVFSSTGPLEGCKLIRKDKSSYGFVDYFDRQSAALAIVSLNGRQLFGQCIKVNWAYASAKREDTSNHFSIFVGDLSPEVTDSTLFACFSVYPSCSDARVMWDQKIGRSRGFGFVSFRDQQEAQSAIDDLNGKWLGSRQIRCNWAAKGAGASNDNRSSDAKSAVELTTGTSDDGQLKANEDAPENNPQYTTVYVGNLAPDVTTIDLHRYFHALGAGVIADVRIQRDRGFGFVRYSNHAEAARAIQLGNARILFGKPIKCSWGSKPTPPGSSTNPLPPPVIRQLPGISAMGLAMYERQVALARMTGMQTLMQHQGQRIGVASQVLYDGGIASPQPPVYY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="38131" e_stop="38209"/>
            <exon e_start="38284" e_stop="38345"/>
            <exon e_start="38433" e_stop="38520"/>
            <exon e_start="38625" e_stop="38700"/>
            <exon e_start="38809" e_stop="38839"/>
            <exon e_start="39564" e_stop="39683"/>
            <exon e_start="40050" e_stop="40135"/>
            <exon e_start="40244" e_stop="40417"/>
            <exon e_start="40507" e_stop="40956"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="0.971"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38131" e_stop="38209" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="38210" i_stop="38283" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38284" e_stop="38345" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38346" i_stop="38432" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38433" e_stop="38520" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.875" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38521" i_stop="38624" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38625" e_stop="38700" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38701" i_stop="38808" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38809" e_stop="38839" e_length="31"/>
          </exon>
          <intron i_serial="5" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38840" i_stop="39563" i_length="724"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="39564" e_stop="39683" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.849" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39684" i_stop="40049" i_length="366"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40050" e_stop="40135" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.911">
            <gDNA_intron_boundary i_start="40136" i_stop="40243" i_length="108"/>
          </intron>
          <exon e_serial="8" e_score="0.971">
            <gDNA_exon_boundary e_start="40244" e_stop="40417" e_length="174"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="40418" i_stop="40506" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="0.953">
            <gDNA_exon_boundary e_start="40507" e_stop="40956" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38131" stop="38209"/>
              <exon start="38284" stop="38345"/>
              <exon start="38433" stop="38520"/>
              <exon start="38625" stop="38700"/>
              <exon start="38809" stop="38839"/>
              <exon start="39564" stop="39683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38156" stop="38209"/>
              <exon start="38284" stop="38345"/>
              <exon start="38433" stop="38520"/>
              <exon start="38625" stop="38700"/>
              <exon start="38809" stop="38839"/>
              <exon start="39564" stop="39683"/>
              <exon start="40050" stop="40135"/>
              <exon start="40244" stop="40287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38447" stop="38520"/>
              <exon start="38625" stop="38700"/>
              <exon start="38809" stop="38839"/>
              <exon start="39564" stop="39683"/>
              <exon start="40050" stop="40135"/>
              <exon start="40244" stop="40272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39564" stop="39683"/>
              <exon start="40050" stop="40135"/>
              <exon start="40244" stop="40417"/>
              <exon start="40507" stop="40956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549342" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTCGTCCTATGGGTTTGTGGATTATTTTGATCGCCAATCAGCTGCGCTTGCTATTGTGAGCCTCAATGGAAGGCAATT : GTTTGGACAGTGTATAAAAGTTAACTGGGCTTATGCCAGTGCTAAAAGAGAGGACACATCAA : ATCATTTTAGCATATTTGTTGGTGATCTTAGTCCGGAGGTTACAGATTCCACACTGTTTGCGTGCTTTTCAGTATACCCTAGCTGCTC : AGATGCAAGAGTGATGTGGGATCAGAAAATAGGCCGGTCTAGAGGGTTTGGGTTTGTTTCCTTTCGTGATCAGCAG : GAAGCCCAAAGTGCAATAGATGACTTGAATG : GAAAGTGGCTTGGAAGCCGACAAATCCGCTGCAACTGGGCAGCAAAAGGTGCTGGAGCCAGTAATGACAACCGGAGTTCAGATGCTAAAAGTGCTGTTGAGTTGACAACTGGAACATCAG : ATGATGGTCAACTGAAGGCCAACGAAGACGCTCCAGAAAATAATCCGCAGTACACAACTGTATATGTTGGCAACCTTGCTCCTGAT : GTCACTACCATTGACCTCCATCGTTATTTTCATGCTCTTGGGGCTGGTGTTATTGCTGATGTCCGTATTCAGCGAGACAGAGGATTTGGCTTTGTACGATACAGCAATCATGCTGAAGCAGCTCGAGCAATTCAATTAGGAAATGCTCGAATCCTCTTTGGTAAACCTATTAAG : TGCTCATGGGGAAGCAAGCCAACTCCACCAGGAAGCAGCACGAACCCTCTACCACCTCCTGTTATCAGACAACTCCCTGGTATTTCAGCCATGGGTCTTGCGATGTACGAGAGGCAGGTTGCTTTGGCTAGGATGACTGGTATGCAGACTCTCATGCAACACCAGGGACAGCGAATTGGCGTTGCTAGTCAGGTTCTGTATGATGGTGGCATTGCTTCCCCGCAGCCACCGGTATACTACTAGTTGTTGATTCAATAAAAACTTGTAAACACCTGTTGTTGTTAGTTCTCTGTGCTATTTTAAGTGATAGAATCCTCCTCTCTTTTTTTTTATCTATTGTTAGTTTTCTTTAGCTTCCTTTAATACCATCAGACAGAATGTATTGGATATGTAGTCTGTATTCTGTTTGAGAATGAAAGTTATAATATCTCTTTGGAAATACAATCACTT</gDNA_template>
            <first_frame> S  R  P  M  G  L  W  I  I  L  I  A  N  Q  L  R  L  L  L  *  A  S  M  E  G  N   : C  L  D  S  V  *  K  L  T  G  L  M  P  V  L  K  E  R  T  H  Q  :  I  I  L  A  Y  L  L  V  I  L  V  R  R  L  Q  I  P  H  C  L  R  A  F  Q  Y  T  L  A  A   : Q  M  Q  E  *  C  G  I  R  K  *  A  G  L  E  G  L  G  L  F  P  F  V  I  S  R :   K  P  K  V  Q  *  M  T  *  M  :  E  S  G  L  E  A  D  K  S  A  A  T  G  Q  Q  K  V  L  E  P  V  M  T  T  G  V  Q  M  L  K  V  L  L  S  *  Q  L  E  H  Q  :  M  M  V  N  *  R  P  T  K  T  L  Q  K  I  I  R  S  T  Q  L  Y  M  L  A  T  L  L  L  M :   S  L  P  L  T  S  I  V  I  F  M  L  L  G  L  V  L  L  L  M  S  V  F  S  E  T  E  D  L  A  L  Y  D  T  A  I  M  L  K  Q  L  E  Q  F  N  *  E  M  L  E  S  S  L  V  N  L  L  S :   A  H  G  E  A  S  Q  L  H  Q  E  A  A  R  T  L  Y  H  L  L  L  S  D  N  S  L  V  F  Q  P  W  V  L  R  C  T  R  G  R  L  L  W  L  G  *  L  V  C  R  L  S  C  N  T  R  D  S  E  L  A  L  L  V  R  F  C  M  M  V  A  L  L  P  R  S  H  R  Y  T  T  S  C  *  F  N  K  N  L  *  T  P  V  V  V  S  S  L  C  Y  F  K  *  *  N  P  P  L  F  F  F  I  Y  C  *  F  S  L  A  S  F  N  T  I  R  Q  N  V  L  D  M  *  S  V  F  C  L  R  M  K  V  I  I  S  L  W  K  Y  N  H   </first_frame>
            <second_frame>  V  V  L  W  V  C  G  L  F  *  S  P  I  S  C  A  C  Y  C  E  P  Q  W  K  A  I  :  V  W  T  V  Y  K  S  *  L  G  L  C  Q  C  *  K  R  G  H  I  K :   S  F  *  H  I  C  W  *  S  *  S  G  G  Y  R  F  H  T  V  C  V  L  F  S  I  P  *  L  L  :  R  C  K  S  D  V  G  S  E  N  R  P  V  *  R  V  W  V  C  F  L  S  *  S  A   : G  S  P  K  C  N  R  *  L  E  W :   K  V  A  W  K  P  T  N  P  L  Q  L  G  S  K  R  C  W  S  Q  *  *  Q  P  E  F  R  C  *  K  C  C  *  V  D  N  W  N  I  R :   *  W  S  T  E  G  Q  R  R  R  S  R  K  *  S  A  V  H  N  C  I  C  W  Q  P  C  S  *   : C  H  Y  H  *  P  P  S  L  F  S  C  S  W  G  W  C  Y  C  *  C  P  Y  S  A  R  Q  R  I  W  L  C  T  I  Q  Q  S  C  *  S  S  S  S  N  S  I  R  K  C  S  N  P  L  W  *  T  Y  *   : V  L  M  G  K  Q  A  N  S  T  R  K  Q  H  E  P  S  T  T  S  C  Y  Q  T  T  P  W  Y  F  S  H  G  S  C  D  V  R  E  A  G  C  F  G  *  D  D  W  Y  A  D  S  H  A  T  P  G  T  A  N  W  R  C  *  S  G  S  V  *  W  W  H  C  F  P  A  A  T  G  I  L  L  V  V  D  S  I  K  T  C  K  H  L  L  L  L  V  L  C  A  I  L  S  D  R  I  L  L  S  F  F  L  S  I  V  S  F  L  *  L  P  L  I  P  S  D  R  M  Y  W  I  C  S  L  Y  S  V  *  E  *  K  L  *  Y  L  F  G  N  T  I  T  </second_frame>
            <third_frame>   S  S  Y  G  F  V  D  Y  F  D  R  Q  S  A  A  L  A  I  V  S  L  N  G  R  Q  L :   F  G  Q  C  I  K  V  N  W  A  Y  A  S  A  K  R  E  D  T  S   : N  H  F  S  I  F  V  G  D  L  S  P  E  V  T  D  S  T  L  F  A  C  F  S  V  Y  P  S  C  S :   D  A  R  V  M  W  D  Q  K  I  G  R  S  R  G  F  G  F  V  S  F  R  D  Q  Q  :  E  A  Q  S  A  I  D  D  L  N   : G  K  W  L  G  S  R  Q  I  R  C  N  W  A  A  K  G  A  G  A  S  N  D  N  R  S  S  D  A  K  S  A  V  E  L  T  T  G  T  S   : D  D  G  Q  L  K  A  N  E  D  A  P  E  N  N  P  Q  Y  T  T  V  Y  V  G  N  L  A  P  D  :  V  T  T  I  D  L  H  R  Y  F  H  A  L  G  A  G  V  I  A  D  V  R  I  Q  R  D  R  G  F  G  F  V  R  Y  S  N  H  A  E  A  A  R  A  I  Q  L  G  N  A  R  I  L  F  G  K  P  I  K  :  C  S  W  G  S  K  P  T  P  P  G  S  S  T  N  P  L  P  P  P  V  I  R  Q  L  P  G  I  S  A  M  G  L  A  M  Y  E  R  Q  V  A  L  A  R  M  T  G  M  Q  T  L  M  Q  H  Q  G  Q  R  I  G  V  A  S  Q  V  L  Y  D  G  G  I  A  S  P  Q  P  P  V  Y  Y  *  L  L  I  Q  *  K  L  V  N  T  C  C  C  *  F  S  V  L  F  *  V  I  E  S  S  S  L  F  F  Y  L  L  L  V  F  F  S  F  L  *  Y  H  Q  T  E  C  I  G  Y  V  V  C  I  L  F  E  N  E  S  Y  N  I  S  L  E  I  Q  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38133" stop="38209"/>
                    <exon start="38284" stop="38345"/>
                    <exon start="38433" stop="38520"/>
                    <exon start="38625" stop="38700"/>
                    <exon start="38809" stop="38839"/>
                    <exon start="39564" stop="39683"/>
                    <exon start="40050" stop="40135"/>
                    <exon start="40244" stop="40417"/>
                    <exon start="40507" stop="40749"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSYGFVDYFDRQSAALAIVSLNGRQLFGQCIKVNWAYASAKREDTSNHFSIFVGDLSPEVTDSTLFACFSVYPSCSDARVMWDQKIGRSRGFGFVSFRDQQEAQSAIDDLNGKWLGSRQIRCNWAAKGAGASNDNRSSDAKSAVELTTGTSDDGQLKANEDAPENNPQYTTVYVGNLAPDVTTIDLHRYFHALGAGVIADVRIQRDRGFGFVRYSNHAEAARAIQLGNARILFGKPIKCSWGSKPTPPGSSTNPLPPPVIRQLPGISAMGLAMYERQVALARMTGMQTLMQHQGQRIGVASQVLYDGGIASPQPPVYY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="48633" PGL_stop="46120"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48633" e_stop="48408"/>
            <exon e_start="47103" e_stop="46120"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48633" e_stop="48408" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="48407" i_stop="47104" i_length="1304"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="47103" e_stop="46120" e_length="984"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48633" stop="48408"/>
              <exon start="47103" stop="46759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48633" stop="48408"/>
              <exon start="47103" stop="46819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48632" stop="48408"/>
              <exon start="47103" stop="46661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48632" stop="48408"/>
              <exon start="47103" stop="46920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48632" stop="48408"/>
              <exon start="47103" stop="47036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48630" stop="48408"/>
              <exon start="47103" stop="46589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48630" stop="48408"/>
              <exon start="47103" stop="46784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48628" stop="48408"/>
              <exon start="47103" stop="46589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48628" stop="48408"/>
              <exon start="47103" stop="46589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48628" stop="48408"/>
              <exon start="47103" stop="46819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48628" stop="48408"/>
              <exon start="47103" stop="46912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48628" stop="48408"/>
              <exon start="47103" stop="46913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48628" stop="48408"/>
              <exon start="47103" stop="46934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48628" stop="48408"/>
              <exon start="47103" stop="46936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48626" stop="48408"/>
              <exon start="47103" stop="46602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48626" stop="48408"/>
              <exon start="47103" stop="46685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48626" stop="48408"/>
              <exon start="47103" stop="46701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48626" stop="48408"/>
              <exon start="47103" stop="46744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48626" stop="48408"/>
              <exon start="47103" stop="46785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48625" stop="48408"/>
              <exon start="47103" stop="46785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48625" stop="48408"/>
              <exon start="47103" stop="46844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48619" stop="48408"/>
              <exon start="47103" stop="46958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48568" stop="48408"/>
              <exon start="47103" stop="46775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48552" stop="48408"/>
              <exon start="47103" stop="46831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48521" stop="48408"/>
              <exon start="47103" stop="46645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48503" stop="48408"/>
              <exon start="47103" stop="46762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48457" stop="48408"/>
              <exon start="47103" stop="46759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48456" stop="48408"/>
              <exon start="47103" stop="46419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48456" stop="48408"/>
              <exon start="47103" stop="46604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48456" stop="48408"/>
              <exon start="47103" stop="46639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48456" stop="48408"/>
              <exon start="47103" stop="46711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48446" stop="48408"/>
              <exon start="47103" stop="46701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48440" stop="48408"/>
              <exon start="47103" stop="46910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47087" stop="46491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47069" stop="46404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47069" stop="46416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47053" stop="46493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47045" stop="46404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47045" stop="46755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46968" stop="46456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46968" stop="46503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46951" stop="46409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46951" stop="46434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46951" stop="46455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46928" stop="46403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46928" stop="46724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46898" stop="46589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46893" stop="46143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46725" stop="46120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCACAAAAAAGCATTTCTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTG : GATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAGTTACTATTCTTGTTTTTTTTTGTTTTGTTTTCATTTTTGATTATTGAAGAAGGGAAGTCTTGGTGTGACGTAACTGGTAAAAGTTAGTGTTATGTGGACCAGGAGGTAACAGGTTCGAGCTGTGGAAAGCAAAAGGACTGTCACAGAGAGCTTAGTACACCAGACTGCCCTGATGATTATAGGCCTATTGCTTTGATATACTACTATTAGATAACCAAGTTTTTGGTTTTTTTTAGTTGGTTTCGAGATTGATTGAAGCCACTTTGATCTAACTATGAAATACTATTTTTAACATTTTTTTTTTGTAATCAAGACTATGTTTGTTATTAAGTACTTTATTATATTTATATATATATATGTAATATTATTTAAATTCATTAAG</gDNA_template>
            <first_frame> F  T  K  K  H  F  L  I  F  Q  L  S  Q  I  F  H  F  F  G  R  K  N  K  M  G  S  S  E  N  M  D  S  G  K  V  T  G  Q  K  S  Q  F  S  Q  T  C  N  L  L  S  Q  F  L  K  K  K  G  S  V  G  D  L  N  N  L  G  I  Y  K  T  T  F  E  S  T   : G  S  Q  Q  T  A  T  T  T  T  T  T  M  N  L  L  P  M  I  E  K  S  S  D  S  S  S  S  S  S  S  V  E  T  N  P  Q  K  P  M  N  L  F  P  Q  E  F  D  F  S  K  E  Q  S  T  K  K  T  E  S  W  K  P  D  Q  P  E  K  A  Q  M  T  I  F  Y  G  G  Q  V  I  V  F  D  D  F  P  A  D  K  A  N  E  I  M  K  L  A  N  K  Q  N  P  T  N  N  F  T  Y  P  M  I  K  N  Q  K  T  A  D  Q  S  G  V  S  F  G  N  K  L  I  Q  E  L  P  K  L  S  M  P  Q  P  S  V  A  D  L  P  I  A  R  R  N  S  L  T  R  F  L  E  K  R  K  D  R  V  T  S  I  A  P  Y  Q  I  S  N  N  K  K  S  K  N  E  D  N  K  A  W  L  G  L  G  A  Q  F  V  K  T  E  Q  Y  F  *  L  L  F  L  F  F  F  V  L  F  S  F  L  I  I  E  E  G  K  S  W  C  D  V  T  G  K  S  *  C  Y  V  D  Q  E  V  T  G  S  S  C  G  K  Q  K  D  C  H  R  E  L  S  T  P  D  C  P  D  D  Y  R  P  I  A  L  I  Y  Y  Y  *  I  T  K  F  L  V  F  F  S  W  F  R  D  *  L  K  P  L  *  S  N  Y  E  I  L  F  L  T  F  F  F  C  N  Q  D  Y  V  C  Y  *  V  L  Y  Y  I  Y  I  Y  I  C  N  I  I  *  I  H  *  </first_frame>
            <second_frame>  S  Q  K  S  I  S  *  Y  F  N  F  L  K  Y  F  I  F  L  A  G  K  T  R  W  G  H  R  K  I  W  I  P  A  R  *  P  D  R  N  L  S  F  L  R  L  V  T  F  *  V  N  S  *  R  K  K  V  L  L  E  I  L  I  I  L  V  S  T  K  L  L  L  N  Q  L  :  D  L  N  K  Q  L  L  P  P  Q  L  L  *  I  C  Y  Q  *  L  R  N  Q  V  I  H  R  R  H  R  R  P  L  K  Q  I  L  K  N  P  *  I  F  S  L  K  N  L  I  S  P  K  N  N  P  Q  K  R  Q  N  L  G  N  L  I  N  Q  R  R  H  K  *  P  F  F  M  V  D  K  S  L  F  L  M  I  F  Q  L  I  K  Q  M  K  S  *  S  *  P  T  N  R  T  P  Q  T  I  S  L  I  L  *  S  R  I  K  K  Q  L  I  N  L  V  *  V  L  V  T  N  *  F  K  N  F  L  N  C  Q  C  H  S  L  L  L  L  I  Y  Q  S  R  D  G  I  H  L  Q  D  S  W  R  K  G  K  I  E  *  H  Q  L  H  H  T  K  S  P  T  T  R  N  P  R  M  R  I  T  K  H  G  W  D  *  V  L  N  L  L  K  L  S  N  I  S  S  Y  Y  S  C  F  F  L  F  C  F  H  F  *  L  L  K  K  G  S  L  G  V  T  *  L  V  K  V  S  V  M  W  T  R  R  *  Q  V  R  A  V  E  S  K  R  T  V  T  E  S  L  V  H  Q  T  A  L  M  I  I  G  L  L  L  *  Y  T  T  I  R  *  P  S  F  W  F  F  L  V  G  F  E  I  D  *  S  H  F  D  L  T  M  K  Y  Y  F  *  H  F  F  F  V  I  K  T  M  F  V  I  K  Y  F  I  I  F  I  Y  I  Y  V  I  L  F  K  F  I  K </second_frame>
            <third_frame>   H  K  K  A  F  L  D  I  S  T  F  S  N  I  S  F  F  W  P  E  K  Q  D  G  V  I  G  K  Y  G  F  R  Q  G  D  R  T  E  I  S  V  F  S  D  L  *  P  F  E  S  I  L  E  E  K  R  F  C  W  R  S  *  *  S  W  Y  L  Q  N  Y  F  *  I  N  W :   I  S  T  N  S  Y  Y  H  H  N  Y  Y  E  F  V  T  N  D  *  E  I  K  *  F  I  V  V  I  V  V  R  *  N  K  S  S  K  T  H  E  S  F  P  S  R  I  *  F  L  Q  R  T  I  H  K  K  D  R  I  L  E  T  *  S  T  R  E  G  T  N  D  H  F  L  W  W  T  S  H  C  F  *  *  F  S  S  *  *  S  K  *  N  H  E  V  S  Q  Q  T  E  P  H  K  Q  F  H  L  S  Y  D  Q  E  S  K  N  S  *  S  I  W  C  E  F  W  *  Q  I  D  S  R  T  S  *  T  V  N  A  T  A  F  C  C  *  F  T  N  R  E  T  E  F  T  Y  K  I  L  G  E  K  E  R  *  S  N  I  N  C  T  I  P  N  L  Q  Q  Q  E  I  Q  E  *  G  *  Q  S  M  V  G  I  R  C  S  I  C  *  N  *  A  I  F  L  V  T  I  L  V  F  F  C  F  V  F  I  F  D  Y  *  R  R  E  V  L  V  *  R  N  W  *  K  L  V  L  C  G  P  G  G  N  R  F  E  L  W  K  A  K  G  L  S  Q  R  A  *  Y  T  R  L  P  *  *  L  *  A  Y  C  F  D  I  L  L  L  D  N  Q  V  F  G  F  F  *  L  V  S  R  L  I  E  A  T  L  I  *  L  *  N  T  I  F  N  I  F  F  L  *  S  R  L  C  L  L  L  S  T  L  L  Y  L  Y  I  Y  M  *  Y  Y  L  N  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48633" stop="48408"/>
                    <exon start="47103" stop="46502"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTKKHFLIFQLSQIFHFFGRKNKMGSSENMDSGKVTGQKSQFSQTCNLLSQFLKKKGSVGDLNNLGIYKTTFESTGSQQTATTTTTTMNLLPMIEKSSDSSSSSSSVETNPQKPMNLFPQEFDFSKEQSTKKTESWKPDQPEKAQMTIFYGGQVIVFDDFPADKANEIMKLANKQNPTNNFTYPMIKNQKTADQSGVSFGNKLIQELPKLSMPQPSVADLPIARRNSLTRFLEKRKDRVTSIAPYQISNNKKSKNEDNKAWLGLGAQFVKTEQYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="56248" PGL_stop="54069"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56248" e_stop="55996"/>
            <exon e_start="55551" e_stop="55398"/>
            <exon e_start="54802" e_stop="54069"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56248" e_stop="55996" e_length="253"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55995" i_stop="55552" i_length="444"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55551" e_stop="55398" e_length="154"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.943">
            <gDNA_intron_boundary i_start="55397" i_stop="54803" i_length="595"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="54802" e_stop="54069" e_length="734"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56248" stop="55996"/>
              <exon start="55551" stop="55398"/>
              <exon start="54802" stop="54556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56247" stop="55996"/>
              <exon start="55551" stop="55398"/>
              <exon start="54802" stop="54464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56247" stop="55996"/>
              <exon start="55551" stop="55398"/>
              <exon start="54802" stop="54481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56245" stop="55996"/>
              <exon start="55551" stop="55398"/>
              <exon start="54802" stop="54712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54731" stop="54069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263860" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAGGGCATAATGGTACAATTAATGGGCAGGGTCAAGCATGGTGGAAGAAATTCCGGCAGAAGCTTCTTAACCATTCCCGAGGACCGCTCGTGCAGATCATGTGGTCTACTGACATCCTAATATCAAATATAACTTTACAAGATTCTCCCTTTTGGACACTCCATCCATATGACTGCAAGAATGTAACAATCAGGAATGTTACAATCCTGGCACCCATTGCTGGGGCTCCGAATACTGATGGCATAGATCCAG : ATTCTTGTGAAGATGTGTTGATAGAGAACTGTTACATCAGCGTTGGTGATGATGGCATCGCAATAAAGAGTGGATGGGATCAGTATGGAATTGCTTATGGACGACCTTCAAAGAATATACTCATTCGAAACCTTGTCATTCGTTCCAATGTCAG : TGCTGGTGTATCAATAGGAAGTGAGATGTCTGGTGGAGTGTCAAATGTCACTGTGGAAAACCTCTTTATCTGGAACTCAAGACGTGCTGTACGCATCAAAACAGCACCTGGAAGAGGAGGATACGTTCGAGATATAACATACAAGAACTTGACATTTGAAAACGTTAGGGTGGGAATCGTCATCAAAACAGATTACAATGAACATGCTGACGAGAGTTTTGACCCCAAAGCTGTCCCATTACTGGAAAACATAAGCTACACAACAATCCACGGTGAGGGAGTTCGCGTGCCTGTTCAAATCCACGGTAGCAAAGAAATCTGGGTGAGAAACGTCACTTTTAGAGATATGTCGATTGGGTTAACATACAAGAAGAAGCATATATTCCAGTGTGCTTACGTTCAAGGTCGTGTTATAGGGACTATCTTCCCTGCTCCTTGCAAGAACCTCGATCTATATGACGAACAAGGACATCTGATCAGACGTTCTGATGCTCAAAACGCAACAGACATAGATTATGACATTTGAACTGATTCCACGGAATGCCTTCATAGCGGGAGCTTAGTGCACCGGGCAGTGTTTTATTTTATTTTCTCATTACATTTTGTTCTCTGCATTATACATACAGAACCAAGTCCCTTTTGATGTATTCAAAAAACCCACAGATCCAATGTAAAGAACACTTCCTTTGTTCCTGTACAGAATCTTAGTTCCATCAAAGTAATGTTTTTAACTA</gDNA_template>
            <first_frame> T  G  H  N  G  T  I  N  G  Q  G  Q  A  W  W  K  K  F  R  Q  K  L  L  N  H  S  R  G  P  L  V  Q  I  M  W  S  T  D  I  L  I  S  N  I  T  L  Q  D  S  P  F  W  T  L  H  P  Y  D  C  K  N  V  T  I  R  N  V  T  I  L  A  P  I  A  G  A  P  N  T  D  G  I  D  P   : D  S  C  E  D  V  L  I  E  N  C  Y  I  S  V  G  D  D  G  I  A  I  K  S  G  W  D  Q  Y  G  I  A  Y  G  R  P  S  K  N  I  L  I  R  N  L  V  I  R  S  N  V  S :   A  G  V  S  I  G  S  E  M  S  G  G  V  S  N  V  T  V  E  N  L  F  I  W  N  S  R  R  A  V  R  I  K  T  A  P  G  R  G  G  Y  V  R  D  I  T  Y  K  N  L  T  F  E  N  V  R  V  G  I  V  I  K  T  D  Y  N  E  H  A  D  E  S  F  D  P  K  A  V  P  L  L  E  N  I  S  Y  T  T  I  H  G  E  G  V  R  V  P  V  Q  I  H  G  S  K  E  I  W  V  R  N  V  T  F  R  D  M  S  I  G  L  T  Y  K  K  K  H  I  F  Q  C  A  Y  V  Q  G  R  V  I  G  T  I  F  P  A  P  C  K  N  L  D  L  Y  D  E  Q  G  H  L  I  R  R  S  D  A  Q  N  A  T  D  I  D  Y  D  I  *  T  D  S  T  E  C  L  H  S  G  S  L  V  H  R  A  V  F  Y  F  I  F  S  L  H  F  V  L  C  I  I  H  T  E  P  S  P  F  *  C  I  Q  K  T  H  R  S  N  V  K  N  T  S  F  V  P  V  Q  N  L  S  S  I  K  V  M  F  L  T  </first_frame>
            <second_frame>  Q  G  I  M  V  Q  L  M  G  R  V  K  H  G  G  R  N  S  G  R  S  F  L  T  I  P  E  D  R  S  C  R  S  C  G  L  L  T  S  *  Y  Q  I  *  L  Y  K  I  L  P  F  G  H  S  I  H  M  T  A  R  M  *  Q  S  G  M  L  Q  S  W  H  P  L  L  G  L  R  I  L  M  A  *  I  Q  :  I  L  V  K  M  C  *  *  R  T  V  T  S  A  L  V  M  M  A  S  Q  *  R  V  D  G  I  S  M  E  L  L  M  D  D  L  Q  R  I  Y  S  F  E  T  L  S  F  V  P  M  S   : V  L  V  Y  Q  *  E  V  R  C  L  V  E  C  Q  M  S  L  W  K  T  S  L  S  G  T  Q  D  V  L  Y  A  S  K  Q  H  L  E  E  E  D  T  F  E  I  *  H  T  R  T  *  H  L  K  T  L  G  W  E  S  S  S  K  Q  I  T  M  N  M  L  T  R  V  L  T  P  K  L  S  H  Y  W  K  T  *  A  T  Q  Q  S  T  V  R  E  F  A  C  L  F  K  S  T  V  A  K  K  S  G  *  E  T  S  L  L  E  I  C  R  L  G  *  H  T  R  R  S  I  Y  S  S  V  L  T  F  K  V  V  L  *  G  L  S  S  L  L  L  A  R  T  S  I  Y  M  T  N  K  D  I  *  S  D  V  L  M  L  K  T  Q  Q  T  *  I  M  T  F  E  L  I  P  R  N  A  F  I  A  G  A  *  C  T  G  Q  C  F  I  L  F  S  H  Y  I  L  F  S  A  L  Y  I  Q  N  Q  V  P  F  D  V  F  K  K  P  T  D  P  M  *  R  T  L  P  L  F  L  Y  R  I  L  V  P  S  K  *  C  F  *  L </second_frame>
            <third_frame>   R  A  *  W  Y  N  *  W  A  G  S  S  M  V  E  E  I  P  A  E  A  S  *  P  F  P  R  T  A  R  A  D  H  V  V  Y  *  H  P  N  I  K  Y  N  F  T  R  F  S  L  L  D  T  P  S  I  *  L  Q  E  C  N  N  Q  E  C  Y  N  P  G  T  H  C  W  G  S  E  Y  *  W  H  R  S  R :   F  L  *  R  C  V  D  R  E  L  L  H  Q  R  W  *  *  W  H  R  N  K  E  W  M  G  S  V  W  N  C  L  W  T  T  F  K  E  Y  T  H  S  K  P  C  H  S  F  Q  C  Q  :  C  W  C  I  N  R  K  *  D  V  W  W  S  V  K  C  H  C  G  K  P  L  Y  L  E  L  K  T  C  C  T  H  Q  N  S  T  W  K  R  R  I  R  S  R  Y  N  I  Q  E  L  D  I  *  K  R  *  G  G  N  R  H  Q  N  R  L  Q  *  T  C  *  R  E  F  *  P  Q  S  C  P  I  T  G  K  H  K  L  H  N  N  P  R  *  G  S  S  R  A  C  S  N  P  R  *  Q  R  N  L  G  E  K  R  H  F  *  R  Y  V  D  W  V  N  I  Q  E  E  A  Y  I  P  V  C  L  R  S  R  S  C  Y  R  D  Y  L  P  C  S  L  Q  E  P  R  S  I  *  R  T  R  T  S  D  Q  T  F  *  C  S  K  R  N  R  H  R  L  *  H  L  N  *  F  H  G  M  P  S  *  R  E  L  S  A  P  G  S  V  L  F  Y  F  L  I  T  F  C  S  L  H  Y  T  Y  R  T  K  S  L  L  M  Y  S  K  N  P  Q  I  Q  C  K  E  H  F  L  C  S  C  T  E  S  *  F  H  Q  S  N  V  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56248" stop="55996"/>
                    <exon start="55551" stop="55398"/>
                    <exon start="54802" stop="54277"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>930</number_coding_nucleotides>
                  <number_encoded_amino_acids>310</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGHNGTINGQGQAWWKKFRQKLLNHSRGPLVQIMWSTDILISNITLQDSPFWTLHPYDCKNVTIRNVTILAPIAGAPNTDGIDPDSCEDVLIENCYISVGDDGIAIKSGWDQYGIAYGRPSKNILIRNLVIRSNVSAGVSIGSEMSGGVSNVTVENLFIWNSRRAVRIKTAPGRGGYVRDITYKNLTFENVRVGIVIKTDYNEHADESFDPKAVPLLENISYTTIHGEGVRVPVQIHGSKEIWVRNVTFRDMSIGLTYKKKHIFQCAYVQGRVIGTIFPAPCKNLDLYDEQGHLIRRSDAQNATDIDYDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="60621" PGL_stop="57676"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60621" e_stop="59947"/>
            <exon e_start="57719" e_stop="57676"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.974" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="60621" e_stop="59947" e_length="675"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.974">
            <gDNA_intron_boundary i_start="59946" i_stop="57720" i_length="2227"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57719" e_stop="57676" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60621" stop="60018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60585" stop="59947"/>
              <exon start="57719" stop="57676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60577" stop="60265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271147" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTCTTCTTCCTTTGAATGTACTCAACCATTCCACTAATCCTGACCACTACACTTCACCTTCCAATTCTTGAAACTCCATTAATGAATCTTTAAACCCCATTTGATTTCTTGATGTTTCCCACTTAGCAATTTATAGAAAGTTTAAAAATTGAATCTTTGATTGGTTCTAGGAATTGGGTTGTTCATAATTTTCTGTATTAAGATCCCAAGATTAATTCTTTTTTGGTATATTATATGGTGGAAACAGTGACATCGTCGTTTTGGTGGCGGTGGACGCAACCCCATCACCACCCACGTCGATGGGTGCCGTCAGTTTTCACCACCCACAAAGCCATTATCACTGCTGTGTGGATCGCTTTCTTGGTAACCGTTTTCTGGTGGCAGGTTGATGCTACCGCCGGAATCTTGATTTTCCGGCGGGTTTTCCCGGCGAGGGAGGTGCCGAAGTTCCGGCCGGTGGCGTTTAACTTGACGGACTTTGGTGGGGTTGGGGATGGTGTAACTGTTAATACGGAGGCGTTTGAGAAGGCAATATTAGCTATTGCTAAACTTGGGAAGAAAGGTGGAGGGCAGCTCAATGTGCCACCGGGATATTGGCTGACGGCTCCGTTTAATCTTACTAGCCATATGACTCTGTTCCTTGCTGAGGGAGCTGTTATATTGGGTATTGAT : GATGAGAAGTACTGGCCTCTCATGCCTCCCTTACCTTCATATGG</gDNA_template>
            <first_frame> F  F  F  F  L  *  M  Y  S  T  I  P  L  I  L  T  T  T  L  H  L  P  I  L  E  T  P  L  M  N  L  *  T  P  F  D  F  L  M  F  P  T  *  Q  F  I  E  S  L  K  I  E  S  L  I  G  S  R  N  W  V  V  H  N  F  L  Y  *  D  P  K  I  N  S  F  L  V  Y  Y  M  V  E  T  V  T  S  S  F  W  W  R  W  T  Q  P  H  H  H  P  R  R  W  V  P  S  V  F  T  T  H  K  A  I  I  T  A  V  W  I  A  F  L  V  T  V  F  W  W  Q  V  D  A  T  A  G  I  L  I  F  R  R  V  F  P  A  R  E  V  P  K  F  R  P  V  A  F  N  L  T  D  F  G  G  V  G  D  G  V  T  V  N  T  E  A  F  E  K  A  I  L  A  I  A  K  L  G  K  K  G  G  G  Q  L  N  V  P  P  G  Y  W  L  T  A  P  F  N  L  T  S  H  M  T  L  F  L  A  E  G  A  V  I  L  G  I  D  :  D  E  K  Y  W  P  L  M  P  P  L  P  S  Y   </first_frame>
            <second_frame>  S  S  S  S  F  E  C  T  Q  P  F  H  *  S  *  P  L  H  F  T  F  Q  F  L  K  L  H  *  *  I  F  K  P  H  L  I  S  *  C  F  P  L  S  N  L  *  K  V  *  K  L  N  L  *  L  V  L  G  I  G  L  F  I  I  F  C  I  K  I  P  R  L  I  L  F  W  Y  I  I  W  W  K  Q  *  H  R  R  F  G  G  G  G  R  N  P  I  T  T  H  V  D  G  C  R  Q  F  S  P  P  T  K  P  L  S  L  L  C  G  S  L  S  W  *  P  F  S  G  G  R  L  M  L  P  P  E  S  *  F  S  G  G  F  S  R  R  G  R  C  R  S  S  G  R  W  R  L  T  *  R  T  L  V  G  L  G  M  V  *  L  L  I  R  R  R  L  R  R  Q  Y  *  L  L  L  N  L  G  R  K  V  E  G  S  S  M  C  H  R  D  I  G  *  R  L  R  L  I  L  L  A  I  *  L  C  S  L  L  R  E  L  L  Y  W  V  L  M :   M  R  S  T  G  L  S  C  L  P  Y  L  H  M  </second_frame>
            <third_frame>   L  L  L  P  L  N  V  L  N  H  S  T  N  P  D  H  Y  T  S  P  S  N  S  *  N  S  I  N  E  S  L  N  P  I  *  F  L  D  V  S  H  L  A  I  Y  R  K  F  K  N  *  I  F  D  W  F  *  E  L  G  C  S  *  F  S  V  L  R  S  Q  D  *  F  F  F  G  I  L  Y  G  G  N  S  D  I  V  V  L  V  A  V  D  A  T  P  S  P  P  T  S  M  G  A  V  S  F  H  H  P  Q  S  H  Y  H  C  C  V  D  R  F  L  G  N  R  F  L  V  A  G  *  C  Y  R  R  N  L  D  F  P  A  G  F  P  G  E  G  G  A  E  V  P  A  G  G  V  *  L  D  G  L  W  W  G  W  G  W  C  N  C  *  Y  G  G  V  *  E  G  N  I  S  Y  C  *  T  W  E  E  R  W  R  A  A  Q  C  A  T  G  I  L  A  D  G  S  V  *  S  Y  *  P  Y  D  S  V  P  C  *  G  S  C  Y  I  G  Y  *   : *  *  E  V  L  A  S  H  A  S  L  T  F  I  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60417" stop="59947"/>
                    <exon start="57719" stop="57678"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPKINSFLVYYMVETVTSSFWWRWTQPHHHPRRWVPSVFTTHKAIITAVWIAFLVTVFWWQVDATAGILIFRRVFPAREVPKFRPVAFNLTDFGGVGDGVTVNTEAFEKAILAIAKLGKKGGGQLNVPPGYWLTAPFNLTSHMTLFLAEGAVILGIDDEKYWPLMPPLPSY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="66671" PGL_stop="67430"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66671" e_stop="67430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66671" e_stop="67430" e_length="760"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66671" stop="67138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66816" stop="67410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66823" stop="67411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66823" stop="67269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66830" stop="67244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66846" stop="67371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66847" stop="67430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66857" stop="67299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACACCTATCCCTCCACACAAATCTTTGTCAAAACAACAACACCCCACCCCCACCCCCACCACACATGATCATTCCAGGGTCCAAAACAACCAAACCAATATCAAGAAAATTATCAAACACCTTCAAAGAAAAGAAAAAGAGAAGCATTTGCAGATTGTTTCTATAAGGGGGAGGTGGACATGTCTAGTAACAAACATGGCCGCCGTTCCCCTAACCCTTCATCTCCTTCCTCGAGCATCGTCTCCTAAAAAACACCATCTTTTCCTTATTCATATATCCATTTTCTTCCTCATTTCTCTATGTAATCCACAATTTTCTTTCTCCATTTCCGAGGACGATGCCTTGATCAAATTCAAAAAATCTTTAAAGAACACCACATCTCTAGATTCATCTTGGGTTAAAGGTACTAGTCCATGTGAAAAAAACAAGAGATGGGCTCGTGTTCAATGCGAACGTAACGTGGTTGAAGGCCTCCTTTTAGGTGAAGCTGGCTTATCAGGAGAACTTGATATTGATCCATTGATTGCACTTCCAGGCCTCCGAGTTCTTGATATCGCGAATAATTCATTTTCAGGCTTAATCCCTGAATTCTTCTTGCTTGGTGCACTTAAATCTATATATATAGATGGAAACCAATTCTCAGGTGAGATTCCTAAAGATTTCTTTGCCAAAATGGGGTCTCTTAAGAAGATATGGCTTGCACGAAACAAATTTTCCGGAGCAATTCCTGAATCATTAGCCAGCTTGAAGTACTTGAT</gDNA_template>
            <first_frame> K  H  L  S  L  H  T  N  L  C  Q  N  N  N  T  P  P  P  P  P  P  H  M  I  I  P  G  S  K  T  T  K  P  I  S  R  K  L  S  N  T  F  K  E  K  K  K  R  S  I  C  R  L  F  L  *  G  G  G  G  H  V  *  *  Q  T  W  P  P  F  P  *  P  F  I  S  F  L  E  H  R  L  L  K  N  T  I  F  S  L  F  I  Y  P  F  S  S  S  F  L  Y  V  I  H  N  F  L  S  P  F  P  R  T  M  P  *  S  N  S  K  N  L  *  R  T  P  H  L  *  I  H  L  G  L  K  V  L  V  H  V  K  K  T  R  D  G  L  V  F  N  A  N  V  T  W  L  K  A  S  F  *  V  K  L  A  Y  Q  E  N  L  I  L  I  H  *  L  H  F  Q  A  S  E  F  L  I  S  R  I  I  H  F  Q  A  *  S  L  N  S  S  C  L  V  H  L  N  L  Y  I  *  M  E  T  N  S  Q  V  R  F  L  K  I  S  L  P  K  W  G  L  L  R  R  Y  G  L  H  E  T  N  F  P  E  Q  F  L  N  H  *  P  A  *  S  T  *  </first_frame>
            <second_frame>  N  T  Y  P  S  T  Q  I  F  V  K  T  T  T  P  H  P  H  P  H  H  T  *  S  F  Q  G  P  K  Q  P  N  Q  Y  Q  E  N  Y  Q  T  P  S  K  K  R  K  R  E  A  F  A  D  C  F  Y  K  G  E  V  D  M  S  S  N  K  H  G  R  R  S  P  N  P  S  S  P  S  S  S  I  V  S  *  K  T  P  S  F  P  Y  S  Y  I  H  F  L  P  H  F  S  M  *  S  T  I  F  F  L  H  F  R  G  R  C  L  D  Q  I  Q  K  I  F  K  E  H  H  I  S  R  F  I  L  G  *  R  Y  *  S  M  *  K  K  Q  E  M  G  S  C  S  M  R  T  *  R  G  *  R  P  P  F  R  *  S  W  L  I  R  R  T  *  Y  *  S  I  D  C  T  S  R  P  P  S  S  *  Y  R  E  *  F  I  F  R  L  N  P  *  I  L  L  A  W  C  T  *  I  Y  I  Y  R  W  K  P  I  L  R  *  D  S  *  R  F  L  C  Q  N  G  V  S  *  E  D  M  A  C  T  K  Q  I  F  R  S  N  S  *  I  I  S  Q  L  E  V  L  D </second_frame>
            <third_frame>   T  P  I  P  P  H  K  S  L  S  K  Q  Q  H  P  T  P  T  P  T  T  H  D  H  S  R  V  Q  N  N  Q  T  N  I  K  K  I  I  K  H  L  Q  R  K  E  K  E  K  H  L  Q  I  V  S  I  R  G  R  W  T  C  L  V  T  N  M  A  A  V  P  L  T  L  H  L  L  P  R  A  S  S  P  K  K  H  H  L  F  L  I  H  I  S  I  F  F  L  I  S  L  C  N  P  Q  F  S  F  S  I  S  E  D  D  A  L  I  K  F  K  K  S  L  K  N  T  T  S  L  D  S  S  W  V  K  G  T  S  P  C  E  K  N  K  R  W  A  R  V  Q  C  E  R  N  V  V  E  G  L  L  L  G  E  A  G  L  S  G  E  L  D  I  D  P  L  I  A  L  P  G  L  R  V  L  D  I  A  N  N  S  F  S  G  L  I  P  E  F  F  L  L  G  A  L  K  S  I  Y  I  D  G  N  Q  F  S  G  E  I  P  K  D  F  F  A  K  M  G  S  L  K  K  I  W  L  A  R  N  K  F  S  G  A  I  P  E  S  L  A  S  L  K  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66673" stop="67428"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPIPPHKSLSKQQHPTPTPTTHDHSRVQNNQTNIKKIIKHLQRKEKEKHLQIVSIRGRWTCLVTNMAAVPLTLHLLPRASSPKKHHLFLIHISIFFLISLCNPQFSFSISEDDALIKFKKSLKNTTSLDSSWVKGTSPCEKNKRWARVQCERNVVEGLLLGEAGLSGELDIDPLIALPGLRVLDIANNSFSGLIPEFFLLGALKSIYIDGNQFSGEIPKDFFAKMGSLKKIWLARNKFSGAIPESLASLKYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="67747" PGL_stop="67944"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67747" e_stop="67944"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67747" e_stop="67944" e_length="198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67747" stop="67944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747185" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGGGAAAGAGAACCTTGATGAGGGGTTGCACATTGCAAGCTCGATTAGGAAGAGCATGAGTATTCATAGCAAAGGAGGTGATTCTATTCGTGGAGGATCAACACGAAGGGGAGGAGGATCACAAAGTGGTAAGGCTATGGGAGATCTCGTGTTAGTGAACAACGAAAATGGTACATTCGGATTGCCTGATTTGATG</gDNA_template>
            <first_frame> L  G  K  E  N  L  D  E  G  L  H  I  A  S  S  I  R  K  S  M  S  I  H  S  K  G  G  D  S  I  R  G  G  S  T  R  R  G  G  G  S  Q  S  G  K  A  M  G  D  L  V  L  V  N  N  E  N  G  T  F  G  L  P  D  L  M </first_frame>
            <second_frame>  L  G  K  R  T  L  M  R  G  C  T  L  Q  A  R  L  G  R  A  *  V  F  I  A  K  E  V  I  L  F  V  E  D  Q  H  E  G  E  E  D  H  K  V  V  R  L  W  E  I  S  C  *  *  T  T  K  M  V  H  S  D  C  L  I  *   </second_frame>
            <third_frame>   W  E  R  E  P  *  *  G  V  A  H  C  K  L  D  *  E  E  H  E  Y  S  *  Q  R  R  *  F  Y  S  W  R  I  N  T  K  G  R  R  I  T  K  W  *  G  Y  G  R  S  R  V  S  E  Q  R  K  W  Y  I  R  I  A  *  F  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67747" stop="67944"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGKENLDEGLHIASSIRKSMSIHSKGGDSIRGGSTRRGGGSQSGKAMGDLVLVNNENGTFGLPDLM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="68929" PGL_stop="69571"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68929" e_stop="69571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="68929" e_stop="69571" e_length="643"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68929" stop="69563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69207" stop="69571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69227" stop="69571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223707" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAATACGAGCCACTTCTATCAGATTACGCCTTCTATCCACTGATCAACAACACACAAATAGTTCAATCCCTTTTCGCGTATAAAGCACCAGAAGCCACACAACATCAACATCTCACTCCAAAATGTGACATATATTGTCTTGGAATCATAATACTAGAAATCCTTACAGGGAAATTTCCTTCTCAGTATCTCAACAATCAAAAAGGTGGAACGGATGTTGTTCAATGGGTGCAATCAGCTATAGCTGACCAAAGAGAATCCGAATTGATTGATCCAGAGATAGCGTCTGCAACAGATTCCGTTGAACAAATGGTGAAACTCCTTCATGTAGGAGCTGCTTGTACTATAAGCGATCCGGATAAGAGGATTGATATGAAGGAAGCATTAAGGAGGATAGAAGAGATAAGTTTAATATGATAATGAACATAACACGAAAGGTTAGTAGATTTTCGTGTGAAAGCTTTAGTTACGTTACATGCCAGAAGAGAGCGATCCTTATAGCCTCATTTGATTCCGTTTTATCTCAGTTAAACTCTACAACGTCTCTCGACTCACTTCATTTGCCAAACAAAACAGAGTTTACTGTATCTAAAACACCAAAATAAGACTTCTAAATTTCCACAAAAAAAAAAAAAAAAACT</gDNA_template>
            <first_frame> E  N  T  S  H  F  Y  Q  I  T  P  S  I  H  *  S  T  T  H  K  *  F  N  P  F  S  R  I  K  H  Q  K  P  H  N  I  N  I  S  L  Q  N  V  T  Y  I  V  L  E  S  *  Y  *  K  S  L  Q  G  N  F  L  L  S  I  S  T  I  K  K  V  E  R  M  L  F  N  G  C  N  Q  L  *  L  T  K  E  N  P  N  *  L  I  Q  R  *  R  L  Q  Q  I  P  L  N  K  W  *  N  S  F  M  *  E  L  L  V  L  *  A  I  R  I  R  G  L  I  *  R  K  H  *  G  G  *  K  R  *  V  *  Y  D  N  E  H  N  T  K  G  *  *  I  F  V  *  K  L  *  L  R  Y  M  P  E  E  S  D  P  Y  S  L  I  *  F  R  F  I  S  V  K  L  Y  N  V  S  R  L  T  S  F  A  K  Q  N  R  V  Y  C  I  *  N  T  K  I  R  L  L  N  F  H  K  K  K  K  K  N  </first_frame>
            <second_frame>  K  I  R  A  T  S  I  R  L  R  L  L  S  T  D  Q  Q  H  T  N  S  S  I  P  F  R  V  *  S  T  R  S  H  T  T  S  T  S  H  S  K  M  *  H  I  L  S  W  N  H  N  T  R  N  P  Y  R  E  I  S  F  S  V  S  Q  Q  S  K  R  W  N  G  C  C  S  M  G  A  I  S  Y  S  *  P  K  R  I  R  I  D  *  S  R  D  S  V  C  N  R  F  R  *  T  N  G  E  T  P  S  C  R  S  C  L  Y  Y  K  R  S  G  *  E  D  *  Y  E  G  S  I  K  E  D  R  R  D  K  F  N  M  I  M  N  I  T  R  K  V  S  R  F  S  C  E  S  F  S  Y  V  T  C  Q  K  R  A  I  L  I  A  S  F  D  S  V  L  S  Q  L  N  S  T  T  S  L  D  S  L  H  L  P  N  K  T  E  F  T  V  S  K  T  P  K  *  D  F  *  I  S  T  K  K  K  K  K  T </second_frame>
            <third_frame>   K  Y  E  P  L  L  S  D  Y  A  F  Y  P  L  I  N  N  T  Q  I  V  Q  S  L  F  A  Y  K  A  P  E  A  T  Q  H  Q  H  L  T  P  K  C  D  I  Y  C  L  G  I  I  I  L  E  I  L  T  G  K  F  P  S  Q  Y  L  N  N  Q  K  G  G  T  D  V  V  Q  W  V  Q  S  A  I  A  D  Q  R  E  S  E  L  I  D  P  E  I  A  S  A  T  D  S  V  E  Q  M  V  K  L  L  H  V  G  A  A  C  T  I  S  D  P  D  K  R  I  D  M  K  E  A  L  R  R  I  E  E  I  S  L  I  *  *  *  T  *  H  E  R  L  V  D  F  R  V  K  A  L  V  T  L  H  A  R  R  E  R  S  L  *  P  H  L  I  P  F  Y  L  S  *  T  L  Q  R  L  S  T  H  F  I  C  Q  T  K  Q  S  L  L  Y  L  K  H  Q  N  K  T  S  K  F  P  Q  K  K  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68931" stop="69347"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYEPLLSDYAFYPLINNTQIVQSLFAYKAPEATQHQHLTPKCDIYCLGIIILEILTGKFPSQYLNNQKGGTDVVQWVQSAIADQRESELIDPEIASATDSVEQMVKLLHVGAACTISDPDKRIDMKEALRRIEEISLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="70499" PGL_stop="73641"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70499" e_stop="70674"/>
            <exon e_start="72193" e_stop="72314"/>
            <exon e_start="73021" e_stop="73641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.590" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70499" e_stop="70674" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.964">
            <gDNA_intron_boundary i_start="70675" i_stop="72192" i_length="1518"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72193" e_stop="72314" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.590" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72315" i_stop="73020" i_length="706"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="73021" e_stop="73641" e_length="621"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70499" stop="70674"/>
              <exon start="72193" stop="72314"/>
              <exon start="73021" stop="73537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70504" stop="70674"/>
              <exon start="72193" stop="72314"/>
              <exon start="73021" stop="73521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70506" stop="70674"/>
              <exon start="72193" stop="72314"/>
              <exon start="73021" stop="73641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70529" stop="70674"/>
              <exon start="72193" stop="72314"/>
              <exon start="73021" stop="73304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70535" stop="70674"/>
              <exon start="72193" stop="72314"/>
              <exon start="73021" stop="73239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70539" stop="70674"/>
              <exon start="72193" stop="72314"/>
              <exon start="73021" stop="73458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70539" stop="70674"/>
              <exon start="72193" stop="72314"/>
              <exon start="73021" stop="73235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70547" stop="70674"/>
              <exon start="72193" stop="72314"/>
              <exon start="73021" stop="73397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGGAGCCAAAAACTTAAAAAAAATAAAACAAAAATGGCATCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACAT : ATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACT : GTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAGATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGCCCACGAATCCCTTGTCTCTTTGCTAGCCTTCCCTGATCTGTGAGAGATATGTATTCAATGGCGGATCTAGAGCATAATCTACGGGTTTTACATAACCTAGTAGCTTTTTCGCGGACCTTGTAAAATATCTATATATATTTGATTCTTGTTTCCTGTTTCATCTTATTACTTGTGTGTTATGTGTTCAGAGTGGCAATAAAAGGCAATGAGTAGAGTTATTTTGTGTAAGTTCAGAATGCTTTGTTTTGCTTTCACTTCCGTTTATTCTTTTTCGGAATATTGGTTTTCCCTGAGTCGAGGTATATCAGAAACAGTCTCTCTCTACCTATGAGGTAAG</gDNA_template>
            <first_frame> E  E  P  K  T  *  K  K  *  N  K  N  G  I  K  F  Y  R  A  Y  S  F  K  N  C  C  *  A  K  L  E  G  T  S  R  R  G  I  L  L  R  N  I  *  R  *  L  S  Y  S  L  Q  I  S  S  S  I  Y  I :   *  G  *  S  T  C  Q  Y  M  H  L  L  L  A  T  F  W  K  C  V  S  S  S  P  D  T  L  C  R  N  M  A  F  L  Y  G  R  A  N  H   : C  D  G  A  K  R  N  *  W  Q  G  E  V  N  L  R  W  T  R  S  P  R  R  *  S  I  R  A  V  Y  S  T  S  K  C  M  V  W  R  I  S  H  E  G  L  Q  H  I  F  R  Y  A  S  N  E  S  T  Y  K  R  W  *  E  T  F  L  S  S  W  M  H  L  C  S  S  I  P  V  *  R  F  *  I  S  K  T  F  *  S  C  L  A  F  S  C  P  R  I  P  C  L  F  A  S  L  P  *  S  V  R  D  M  Y  S  M  A  D  L  E  H  N  L  R  V  L  H  N  L  V  A  F  S  R  T  L  *  N  I  Y  I  Y  L  I  L  V  S  C  F  I  L  L  L  V  C  Y  V  F  R  V  A  I  K  G  N  E  *  S  Y  F  V  *  V  Q  N  A  L  F  C  F  H  F  R  L  F  F  F  G  I  L  V  F  P  E  S  R  Y  I  R  N  S  L  S  L  P  M  R  *  </first_frame>
            <second_frame>  R  S  Q  K  L  K  K  N  K  T  K  M  A  S  N  S  T  E  P  T  A  S  K  I  V  A  K  L  N  L  K  V  H  P  E  G  G  F  Y  S  E  T  F  R  D  N  S  V  I  L  S  R  S  H  L  P  S  T   : Y  K  V  D  R  P  V  S  T  C  I  Y  F  L  L  P  S  G  S  A  S  H  L  H  R  I  P  C  A  E  T  W  H  F  Y  M  G  E  P  I  T  :  V  M  E  L  N  E  T  D  G  K  V  K  L  T  C  V  G  P  D  P  L  V  D  D  Q  F  V  Q  Y  T  V  P  P  N  V  W  F  G  A  F  P  T  K  D  Y  N  I  S  S  D  M  Q  V  T  K  A  P  T  R  D  G  E  K  H  F  S  L  V  G  C  T  C  A  P  A  F  Q  F  E  D  F  E  L  A  K  R  S  D  L  V  S  R  F  P  A  H  E  S  L  V  S  L  L  A  F  P  D  L  *  E  I  C  I  Q  W  R  I  *  S  I  I  Y  G  F  Y  I  T  *  *  L  F  R  G  P  C  K  I  S  I  Y  I  *  F  L  F  P  V  S  S  Y  Y  L  C  V  M  C  S  E  W  Q  *  K  A  M  S  R  V  I  L  C  K  F  R  M  L  C  F  A  F  T  S  V  Y  S  F  S  E  Y  W  F  S  L  S  R  G  I  S  E  T  V  S  L  Y  L  *  G  K </second_frame>
            <third_frame>   G  A  K  N  L  K  K  I  K  Q  K  W  H  Q  I  L  Q  S  L  Q  L  Q  K  L  L  L  S  *  T  *  R  Y  I  Q  K  G  D  F  T  Q  K  H  L  E  I  T  Q  L  F  S  P  D  L  I  F  H  L  H  :  I  R  L  I  D  L  S  V  H  A  S  T  S  C  Y  L  L  E  V  R  L  I  F  T  G  Y  L  V  Q  K  H  G  I  F  I  W  E  S  Q  S  L :   *  W  S  *  T  K  L  M  A  R  *  S  *  L  A  L  D  P  I  P  S  *  M  I  N  S  C  S  I  Q  Y  L  Q  M  Y  G  L  A  H  F  P  R  R  I  T  T  Y  L  P  I  C  K  *  R  K  H  L  Q  E  M  V  R  N  I  S  L  *  L  D  A  L  V  L  Q  H  S  S  L  K  I  L  N  *  Q  N  V  L  I  L  S  R  V  F  L  P  T  N  P  L  S  L  C  *  P  S  L  I  C  E  R  Y  V  F  N  G  G  S  R  A  *  S  T  G  F  T  *  P  S  S  F  F  A  D  L  V  K  Y  L  Y  I  F  D  S  C  F  L  F  H  L  I  T  C  V  L  C  V  Q  S  G  N  K  R  Q  *  V  E  L  F  C  V  S  S  E  C  F  V  L  L  S  L  P  F  I  L  F  R  N  I  G  F  P  *  V  E  V  Y  Q  K  Q  S  L  S  T  Y  E  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70500" stop="70674"/>
                    <exon start="72193" stop="72314"/>
                    <exon start="73021" stop="73347"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSQKLKKNKTKMASNSTEPTASKIVAKLNLKVHPEGGFYSETFRDNSVILSRSHLPSTYKVDRPVSTCIYFLLPSGSASHLHRIPCAETWHFYMGEPITVMELNETDGKVKLTCVGPDPLVDDQFVQYTVPPNVWFGAFPTKDYNISSDMQVTKAPTRDGEKHFSLVGCTCAPAFQFEDFELAKRSDLVSRFPAHESLVSLLAFPDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="80588" PGL_stop="78147"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80436" e_stop="80255"/>
            <exon e_start="79588" e_stop="79514"/>
            <exon e_start="79360" e_stop="79256"/>
            <exon e_start="78836" e_stop="78147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.818" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.913" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80436" e_stop="80255" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="80254" i_stop="79589" i_length="666"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79588" e_stop="79514" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.818">
            <gDNA_intron_boundary i_start="79513" i_stop="79361" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79360" e_stop="79256" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.913">
            <gDNA_intron_boundary i_start="79255" i_stop="78837" i_length="419"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="78836" e_stop="78147" e_length="690"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80436" stop="80255"/>
              <exon start="79588" stop="79514"/>
              <exon start="79360" stop="79256"/>
              <exon start="78836" stop="78510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80436" stop="80255"/>
              <exon start="79588" stop="79514"/>
              <exon start="79360" stop="79256"/>
              <exon start="78836" stop="78569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80436" stop="80255"/>
              <exon start="79588" stop="79514"/>
              <exon start="79360" stop="79256"/>
              <exon start="78836" stop="78589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80436" stop="80255"/>
              <exon start="79588" stop="79514"/>
              <exon start="79360" stop="79256"/>
              <exon start="78836" stop="78598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80436" stop="80255"/>
              <exon start="79588" stop="79514"/>
              <exon start="79360" stop="79256"/>
              <exon start="78836" stop="78629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80436" stop="80255"/>
              <exon start="79588" stop="79514"/>
              <exon start="79360" stop="79256"/>
              <exon start="78836" stop="78737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80436" stop="80255"/>
              <exon start="79588" stop="79514"/>
              <exon start="79360" stop="79256"/>
              <exon start="78836" stop="78772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80436" stop="80255"/>
              <exon start="79588" stop="79514"/>
              <exon start="79360" stop="79256"/>
              <exon start="78836" stop="78772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80436" stop="80255"/>
              <exon start="79588" stop="79514"/>
              <exon start="79360" stop="79256"/>
              <exon start="78836" stop="78773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80436" stop="80255"/>
              <exon start="79588" stop="79514"/>
              <exon start="79360" stop="79256"/>
              <exon start="78836" stop="78800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80436" stop="80255"/>
              <exon start="79588" stop="79514"/>
              <exon start="79360" stop="79256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80309" stop="80255"/>
              <exon start="79588" stop="79514"/>
              <exon start="79360" stop="79256"/>
              <exon start="78836" stop="78481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79285" stop="79256"/>
              <exon start="78836" stop="78147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377965" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG : GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAG : ATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG : GTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCATCAGTGTGCAATTGCACTCACACAATGTCTAGGTGCCTTTGGATGTTTAGGTTGCTTCGCTTATTGTCAATACTGCTGTTGTGAAAATCATAAATAAAAAAAAAAGGGCAGCTCGATGGACTAAGCTCCCACTATACGCGGGGTTCGGAGAATGGACCGGACCACAAGAGTCTGTTGTGGAGATAATCAATGAGAAGAAAATTACAACTACTCCTACAACTTCAACTTTCTCCCCATGATTTTGTGTCAACTAATGACAGATTATAAAGTTAGTTGATAGTGAACATATTCATGGTTCTTTTTTTATCCTCTCCCCATATTTTTGTATAATTATTTTTACAATATTTTTCAATAGATACATATTTTTTTCTAAGAAGTTGATCATCAATTTGTAAATAATTGTATTCAATTGTTTTTGAATGTTTTTTATTGGAGAGAAGAAAATTCCTTA</gDNA_template>
            <first_frame> F  C  D  R  C  I  P  L  K  F  Q  T  F  H  L  K  D  L  *  S  Y  Q  V  D  T  K  E  C  F  L  R  C  *  K  L  K  E  Y  *  Q  T  *  V  I  S  R  W  S  *  K  V  S  S  P  K  P  Y  L  L  T  R :   Q  G  *  S  S  R  L  K  Y  S  Q  L  R  H  G  L  H  K  I  R  I  L  K  K  R :   *  Q  K  *  V  Y  K  T  P  S  S  L  S  I  H  A  W  H  W  W  R  R  K  K  *  K  S  L  S  Q  P  Q  R  G  R :   F  I  V  M  M  R  R  *  K  N  A  *  Y  R  R  Q  Y  Y  Y  N  T  Q  A  S  V  L  V  I  S  L  L  Q  L  R  I  F  L  L  E  P  S  I  K  R  T  K  Q  R  L  L  Q  K  Q  R  L  I  V  L  G  S  C  V  V  Y  A  A  V  A  V  A  A  L  Q  R  V  R  I  *  I  I  S  V  Q  L  H  S  H  N  V  *  V  P  L  D  V  *  V  A  S  L  I  V  N  T  A  V  V  K  I  I  N  K  K  K  R  A  A  R  W  T  K  L  P  L  Y  A  G  F  G  E  W  T  G  P  Q  E  S  V  V  E  I  I  N  E  K  K  I  T  T  T  P  T  T  S  T  F  S  P  *  F  C  V  N  *  *  Q  I  I  K  L  V  D  S  E  H  I  H  G  S  F  F  I  L  S  P  Y  F  C  I  I  I  F  T  I  F  F  N  R  Y  I  F  F  S  K  K  L  I  I  N  L  *  I  I  V  F  N  C  F  *  M  F  F  I  G  E  K  K  I  P   </first_frame>
            <second_frame>  F  V  I  G  V  S  R  S  N  S  R  P  F  I  *  R  T  C  S  L  I  R  *  I  P  R  S  V  S  *  D  A  K  S  *  R  N  I  N  R  H  E  *  F  L  G  G  A  E  R  F  Q  V  Q  S  H  T  S  *  Q   : G  K  G  E  A  A  D  *  N  T  H  S  S  G  M  V  Y  T  K  *  G  S  *  K  K   : D  S  K  N  E  Y  T  R  R  R  H  L  *  V  Y  T  H  G  I  G  G  G  G  K  S  E  N  H  *  V  N  H  K  E  E   : G  S  L  *  *  *  E  D  R  R  T  L  N  T  E  D  N  I  T  T  I  P  R  L  R  F  W  *  S  H  C  Y  N  *  E  Y  S  S  W  S  H  R  *  R  G  R  S  R  D  Y  C  K  S  N  V  *  L  F  W  E  V  V  W  S  M  L  L  L  Q  L  L  H  Y  S  V  F  E  Y  E  S  S  V  C  N  C  T  H  T  M  S  R  C  L  W  M  F  R  L  L  R  L  L  S  I  L  L  L  *  K  S  *  I  K  K  K  G  Q  L  D  G  L  S  S  H  Y  T  R  G  S  E  N  G  P  D  H  K  S  L  L  W  R  *  S  M  R  R  K  L  Q  L  L  L  Q  L  Q  L  S  P  H  D  F  V  S  T  N  D  R  L  *  S  *  L  I  V  N  I  F  M  V  L  F  L  S  S  P  H  I  F  V  *  L  F  L  Q  Y  F  S  I  D  T  Y  F  F  L  R  S  *  S  S  I  C  K  *  L  Y  S  I  V  F  E  C  F  L  L  E  R  R  K  F  L  </second_frame>
            <third_frame>   L  *  *  V  Y  P  A  Q  I  P  D  L  S  S  E  G  P  V  V  L  S  G  R  Y  Q  G  V  F  P  E  M  L  K  A  K  G  I  L  T  D  M  S  N  F  S  V  E  L  K  G  F  K  S  K  A  I  P  L  D  K  :  A  R  V  K  Q  Q  I  E  I  L  T  A  Q  A  W  F  T  Q  N  K  D  L  E  K  K  :  I  A  K  M  S  I  Q  D  A  V  I  S  E  Y  T  R  M  A  L  V  E  A  E  K  V  K  I  I  K  S  T  T  K  R  K  :  V  H  C  D  D  E  K  I  E  E  R  L  I  Q  K  T  I  L  L  Q  Y  P  G  F  G  F  G  N  L  T  A  T  I  E  N  I  P  P  G  A  I  D  K  E  D  E  A  E  I  I  A  K  A  T  S  N  C  F  G  K  L  C  G  L  C  C  C  C  S  C  C  I  T  A  C  S  N  M  N  H  Q  C  A  I  A  L  T  Q  C  L  G  A  F  G  C  L  G  C  F  A  Y  C  Q  Y  C  C  C  E  N  H  K  *  K  K  K  G  S  S  M  D  *  A  P  T  I  R  G  V  R  R  M  D  R  T  T  R  V  C  C  G  D  N  Q  *  E  E  N  Y  N  Y  S  Y  N  F  N  F  L  P  M  I  L  C  Q  L  M  T  D  Y  K  V  S  *  *  *  T  Y  S  W  F  F  F  Y  P  L  P  I  F  L  Y  N  Y  F  Y  N  I  F  Q  *  I  H  I  F  F  *  E  V  D  H  Q  F  V  N  N  C  I  Q  L  F  L  N  V  F  Y  W  R  E  E  N  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80425" stop="80255"/>
                    <exon start="79588" stop="79514"/>
                    <exon start="79360" stop="79256"/>
                    <exon start="78836" stop="78501"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYPAQIPDLSSEGPVVLSGRYQGVFPEMLKAKGILTDMSNFSVELKGFKSKAIPLDKARVKQQIEILTAQAWFTQNKDLEKKIAKMSIQDAVISEYTRMALVEAEKVKIIKSTTKRKVHCDDEKIEERLIQKTILLQYPGFGFGNLTATIENIPPGAIDKEDEAEIIAKATSNCFGKLCGLCCCCSCCITACSNMNHQCAIALTQCLGAFGCLGCFAYCQYCCCENHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="80588" e_stop="80545"/>
            <exon e_start="80425" e_stop="80255"/>
            <exon e_start="79588" e_stop="79514"/>
            <exon e_start="79360" e_stop="79256"/>
            <exon e_start="78836" e_stop="78147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.818" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.913" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80588" e_stop="80545" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="80544" i_stop="80426" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80425" e_stop="80255" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="80254" i_stop="79589" i_length="666"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79588" e_stop="79514" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.818">
            <gDNA_intron_boundary i_start="79513" i_stop="79361" i_length="153"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79360" e_stop="79256" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.913">
            <gDNA_intron_boundary i_start="79255" i_stop="78837" i_length="419"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="78836" e_stop="78147" e_length="690"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80588" stop="80545"/>
              <exon start="80425" stop="80255"/>
              <exon start="79588" stop="79514"/>
              <exon start="79360" stop="79256"/>
              <exon start="78836" stop="78816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80309" stop="80255"/>
              <exon start="79588" stop="79514"/>
              <exon start="79360" stop="79256"/>
              <exon start="78836" stop="78481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79285" stop="79256"/>
              <exon start="78836" stop="78147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377965" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCTTACTGATGTGTCTGGCTATGATCGAATGAATATGGAATT : GTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG : GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAG : ATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG : GTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCATCAGTGTGCAATTGCACTCACACAATGTCTAGGTGCCTTTGGATGTTTAGGTTGCTTCGCTTATTGTCAATACTGCTGTTGTGAAAATCATAAATAAAAAAAAAAGGGCAGCTCGATGGACTAAGCTCCCACTATACGCGGGGTTCGGAGAATGGACCGGACCACAAGAGTCTGTTGTGGAGATAATCAATGAGAAGAAAATTACAACTACTCCTACAACTTCAACTTTCTCCCCATGATTTTGTGTCAACTAATGACAGATTATAAAGTTAGTTGATAGTGAACATATTCATGGTTCTTTTTTTATCCTCTCCCCATATTTTTGTATAATTATTTTTACAATATTTTTCAATAGATACATATTTTTTTCTAAGAAGTTGATCATCAATTTGTAAATAATTGTATTCAATTGTTTTTGAATGTTTTTTATTGGAGAGAAGAAAATTCCTTA</gDNA_template>
            <first_frame> L  L  T  D  V  S  G  Y  D  R  M  N  M  E  L :   C  I  P  L  K  F  Q  T  F  H  L  K  D  L  *  S  Y  Q  V  D  T  K  E  C  F  L  R  C  *  K  L  K  E  Y  *  Q  T  *  V  I  S  R  W  S  *  K  V  S  S  P  K  P  Y  L  L  T  R :   Q  G  *  S  S  R  L  K  Y  S  Q  L  R  H  G  L  H  K  I  R  I  L  K  K  R :   *  Q  K  *  V  Y  K  T  P  S  S  L  S  I  H  A  W  H  W  W  R  R  K  K  *  K  S  L  S  Q  P  Q  R  G  R :   F  I  V  M  M  R  R  *  K  N  A  *  Y  R  R  Q  Y  Y  Y  N  T  Q  A  S  V  L  V  I  S  L  L  Q  L  R  I  F  L  L  E  P  S  I  K  R  T  K  Q  R  L  L  Q  K  Q  R  L  I  V  L  G  S  C  V  V  Y  A  A  V  A  V  A  A  L  Q  R  V  R  I  *  I  I  S  V  Q  L  H  S  H  N  V  *  V  P  L  D  V  *  V  A  S  L  I  V  N  T  A  V  V  K  I  I  N  K  K  K  R  A  A  R  W  T  K  L  P  L  Y  A  G  F  G  E  W  T  G  P  Q  E  S  V  V  E  I  I  N  E  K  K  I  T  T  T  P  T  T  S  T  F  S  P  *  F  C  V  N  *  *  Q  I  I  K  L  V  D  S  E  H  I  H  G  S  F  F  I  L  S  P  Y  F  C  I  I  I  F  T  I  F  F  N  R  Y  I  F  F  S  K  K  L  I  I  N  L  *  I  I  V  F  N  C  F  *  M  F  F  I  G  E  K  K  I  P   </first_frame>
            <second_frame>  S  L  L  M  C  L  A  M  I  E  *  I  W  N   : C  V  S  R  S  N  S  R  P  F  I  *  R  T  C  S  L  I  R  *  I  P  R  S  V  S  *  D  A  K  S  *  R  N  I  N  R  H  E  *  F  L  G  G  A  E  R  F  Q  V  Q  S  H  T  S  *  Q   : G  K  G  E  A  A  D  *  N  T  H  S  S  G  M  V  Y  T  K  *  G  S  *  K  K   : D  S  K  N  E  Y  T  R  R  R  H  L  *  V  Y  T  H  G  I  G  G  G  G  K  S  E  N  H  *  V  N  H  K  E  E   : G  S  L  *  *  *  E  D  R  R  T  L  N  T  E  D  N  I  T  T  I  P  R  L  R  F  W  *  S  H  C  Y  N  *  E  Y  S  S  W  S  H  R  *  R  G  R  S  R  D  Y  C  K  S  N  V  *  L  F  W  E  V  V  W  S  M  L  L  L  Q  L  L  H  Y  S  V  F  E  Y  E  S  S  V  C  N  C  T  H  T  M  S  R  C  L  W  M  F  R  L  L  R  L  L  S  I  L  L  L  *  K  S  *  I  K  K  K  G  Q  L  D  G  L  S  S  H  Y  T  R  G  S  E  N  G  P  D  H  K  S  L  L  W  R  *  S  M  R  R  K  L  Q  L  L  L  Q  L  Q  L  S  P  H  D  F  V  S  T  N  D  R  L  *  S  *  L  I  V  N  I  F  M  V  L  F  L  S  S  P  H  I  F  V  *  L  F  L  Q  Y  F  S  I  D  T  Y  F  F  L  R  S  *  S  S  I  C  K  *  L  Y  S  I  V  F  E  C  F  L  L  E  R  R  K  F  L  </second_frame>
            <third_frame>   P  Y  *  C  V  W  L  *  S  N  E  Y  G  I  :  V  Y  P  A  Q  I  P  D  L  S  S  E  G  P  V  V  L  S  G  R  Y  Q  G  V  F  P  E  M  L  K  A  K  G  I  L  T  D  M  S  N  F  S  V  E  L  K  G  F  K  S  K  A  I  P  L  D  K  :  A  R  V  K  Q  Q  I  E  I  L  T  A  Q  A  W  F  T  Q  N  K  D  L  E  K  K  :  I  A  K  M  S  I  Q  D  A  V  I  S  E  Y  T  R  M  A  L  V  E  A  E  K  V  K  I  I  K  S  T  T  K  R  K  :  V  H  C  D  D  E  K  I  E  E  R  L  I  Q  K  T  I  L  L  Q  Y  P  G  F  G  F  G  N  L  T  A  T  I  E  N  I  P  P  G  A  I  D  K  E  D  E  A  E  I  I  A  K  A  T  S  N  C  F  G  K  L  C  G  L  C  C  C  C  S  C  C  I  T  A  C  S  N  M  N  H  Q  C  A  I  A  L  T  Q  C  L  G  A  F  G  C  L  G  C  F  A  Y  C  Q  Y  C  C  C  E  N  H  K  *  K  K  K  G  S  S  M  D  *  A  P  T  I  R  G  V  R  R  M  D  R  T  T  R  V  C  C  G  D  N  Q  *  E  E  N  Y  N  Y  S  Y  N  F  N  F  L  P  M  I  L  C  Q  L  M  T  D  Y  K  V  S  *  *  *  T  Y  S  W  F  F  F  Y  P  L  P  I  F  L  Y  N  Y  F  Y  N  I  F  Q  *  I  H  I  F  F  *  E  V  D  H  Q  F  V  N  N  C  I  Q  L  F  L  N  V  F  Y  W  R  E  E  N  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80562" stop="80545"/>
                    <exon start="80425" stop="80255"/>
                    <exon start="79588" stop="79514"/>
                    <exon start="79360" stop="79256"/>
                    <exon start="78836" stop="78501"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNEYGIVYPAQIPDLSSEGPVVLSGRYQGVFPEMLKAKGILTDMSNFSVELKGFKSKAIPLDKARVKQQIEILTAQAWFTQNKDLEKKIAKMSIQDAVISEYTRMALVEAEKVKIIKSTTKRKVHCDDEKIEERLIQKTILLQYPGFGFGNLTATIENIPPGAIDKEDEAEIIAKATSNCFGKLCGLCCCCSCCITACSNMNHQCAIALTQCLGAFGCLGCFAYCQYCCCENHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="89413" PGL_stop="86749"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89413" e_stop="89208"/>
            <exon e_start="88836" e_stop="88678"/>
            <exon e_start="88439" e_stop="88290"/>
            <exon e_start="88124" e_stop="87929"/>
            <exon e_start="87517" e_stop="86749"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.171" acc_prob="0.619" e_score="0.985"/>
          <exon-intron don_prob="0.793" acc_prob="0.993" e_score="0.987"/>
          <exon-intron don_prob="0.995" acc_prob="0.938" e_score="0.947"/>
          <exon-intron don_prob="0.943" acc_prob="0.894" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="89413" e_stop="89208" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.171" acc_prob="0.619">
            <gDNA_intron_boundary i_start="89207" i_stop="88837" i_length="371"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="88836" e_stop="88678" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.793" acc_prob="0.993">
            <gDNA_intron_boundary i_start="88677" i_stop="88440" i_length="238"/>
          </intron>
          <exon e_serial="3" e_score="0.947">
            <gDNA_exon_boundary e_start="88439" e_stop="88290" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.938">
            <gDNA_intron_boundary i_start="88289" i_stop="88125" i_length="165"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88124" e_stop="87929" e_length="196"/>
          </exon>
          <intron i_serial="4" don_prob="0.943" acc_prob="0.894">
            <gDNA_intron_boundary i_start="87928" i_stop="87518" i_length="411"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="87517" e_stop="86749" e_length="769"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89413" stop="89208"/>
              <exon start="88836" stop="88678"/>
              <exon start="88439" stop="88290"/>
              <exon start="88124" stop="88113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88338" stop="88290"/>
              <exon start="88124" stop="87929"/>
              <exon start="87517" stop="87240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88003" stop="87929"/>
              <exon start="87517" stop="86749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88002" stop="87929"/>
              <exon start="87517" stop="86917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87379" stop="86819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309725" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAAAATAATGTCCATTGTGGTGGAATGAGTTCAAGTCCAAACATCCCTAAGCTTCAAGGATGAAGGGAGGTTTGAAGGTGTCACAGATCTCTCTCATCCTGATCGGATTCGTGTGTGCTTCTGTTCTTCTTTTGGCATATGTGAAGAGCCTACTTCTTTCTTCTTCAGTACTACCTCAGAATCATGTCTTGCAGCTTTCTCCAG : ATCTTAGAGTGAAAGATGAAGAAGCTTTGGGAGAAGGAAGCGGATCGGAGCAATCACAAGACAGTGTTAACTTTGAATCTGAAAAATATCCTACTTATGCAAACTCTTCACCGGTGATTAAGGTGACTGAAGAGTTGATTACTCATGAAGAAAGAGGAG : GTATTGCTCCGAATATCACTGAAAAAGGAGATTCAAAAGATGTTTCAGACAAAAAAACTGGTTTAATAGAGCAGGAAATTGACGTTTCCACTGCTGTGAGTTCTGGGGGTGAACATAGTGACAATTTTACAGCAACCCCGGAAAGACAAG : ATTGCAACTTTGCTAAAGGCAGATGGGTCATAGATGATAGCCGACCTTTATATTCTGGATTTGGCTGTAAGCAATGGTTGTCATCTATGTGGGCTTGTCGCTTGACACAACGTACAGATTTTGAATATGAAAAGTTACGTTGGCGACCCAAAAATTGTGAGATGGAAGATTTTACTGGTGTTAAATTTCTGAAAAG : GATGCAAAACAAAACTCTGGCGTTTATCGGGGATTCGCTTGGTAGACAGCAATTTCAGTCACTTATGTGTATGATTAGTGGTGGAAAAGATAGACCTAATGTTCTTGATGTGGGGCATGAATATGGTCTAGTGCAATCTCGTGGTTCTGGTCGACCTGATGGATGGGCTTTTCGATTTCCAGACACCAAAACAACTATTCTTTATTATTGGTCTGCTAGTCTCTGTGACTTGACACCTATAAATCCATCTGATCCTGCTACTGATTACGCCATGCACCTGGACCGTCCTCCAGCATTTTTGAGTCATTTCCTTCCAAGGTTCGATGTCCTTGTTCTAAACACAGGACACCATTGGAATAGAGGAAAGCTTAAGGCCAATCGATGGGTCATGTATGTAGGTGGTGTCCCTAATACAAACCGGAAGATTGTGACTATAGGTGGTGCCAAGAATTTCACAATCCACAGTATTGTCAATTGGGTGAACTCACAGCTGCCAAAATACCCTCATGTAAAAGCATTCTATCGGACTATATCCCCCAGACATTTCTTTAACGGAGATTGGAACACAGGAGGTACATGTGACAACACTACACCACTTTCCGAAGGGAAGGAGGTTTTACAAGACGAATCAAGTGACTATGATGCAGCACGTGCTGTTAGAGGAACAGACGTTAAGCTTTTGGACATCACTGCTTTATCCCAGCTGAGAGATGAAGGTCATATATCTCGATACAGCATCAAAGCAACACCAGGTGTCCAGGATTGTCTA</gDNA_template>
            <first_frame> A  K  I  M  S  I  V  V  E  *  V  Q  V  Q  T  S  L  S  F  K  D  E  G  R  F  E  G  V  T  D  L  S  H  P  D  R  I  R  V  C  F  C  S  S  F  G  I  C  E  E  P  T  S  F  F  F  S  T  T  S  E  S  C  L  A  A  F  S  R :   S  *  S  E  R  *  R  S  F  G  R  R  K  R  I  G  A  I  T  R  Q  C  *  L  *  I  *  K  I  S  Y  L  C  K  L  F  T  G  D  *  G  D  *  R  V  D  Y  S  *  R  K  R  R :   Y  C  S  E  Y  H  *  K  R  R  F  K  R  C  F  R  Q  K  N  W  F  N  R  A  G  N  *  R  F  H  C  C  E  F  W  G  *  T  *  *  Q  F  Y  S  N  P  G  K  T  R :   L  Q  L  C  *  R  Q  M  G  H  R  *  *  P  T  F  I  F  W  I  W  L  *  A  M  V  V  I  Y  V  G  L  S  L  D  T  T  Y  R  F  *  I  *  K  V  T  L  A  T  Q  K  L  *  D  G  R  F  Y  W  C  *  I  S  E  K  :  D  A  K  Q  N  S  G  V  Y  R  G  F  A  W  *  T  A  I  S  V  T  Y  V  Y  D  *  W  W  K  R  *  T  *  C  S  *  C  G  A  *  I  W  S  S  A  I  S  W  F  W  S  T  *  W  M  G  F  S  I  S  R  H  Q  N  N  Y  S  L  L  L  V  C  *  S  L  *  L  D  T  Y  K  S  I  *  S  C  Y  *  L  R  H  A  P  G  P  S  S  S  I  F  E  S  F  P  S  K  V  R  C  P  C  S  K  H  R  T  P  L  E  *  R  K  A  *  G  Q  S  M  G  H  V  C  R  W  C  P  *  Y  K  P  E  D  C  D  Y  R  W  C  Q  E  F  H  N  P  Q  Y  C  Q  L  G  E  L  T  A  A  K  I  P  S  C  K  S  I  L  S  D  Y  I  P  Q  T  F  L  *  R  R  L  E  H  R  R  Y  M  *  Q  H  Y  T  T  F  R  R  E  G  G  F  T  R  R  I  K  *  L  *  C  S  T  C  C  *  R  N  R  R  *  A  F  G  H  H  C  F  I  P  A  E  R  *  R  S  Y  I  S  I  Q  H  Q  S  N  T  R  C  P  G  L  S  </first_frame>
            <second_frame>  Q  K  *  C  P  L  W  W  N  E  F  K  S  K  H  P  *  A  S  R  M  K  G  G  L  K  V  S  Q  I  S  L  I  L  I  G  F  V  C  A  S  V  L  L  L  A  Y  V  K  S  L  L  L  S  S  S  V  L  P  Q  N  H  V  L  Q  L  S  P   : D  L  R  V  K  D  E  E  A  L  G  E  G  S  G  S  E  Q  S  Q  D  S  V  N  F  E  S  E  K  Y  P  T  Y  A  N  S  S  P  V  I  K  V  T  E  E  L  I  T  H  E  E  R  G   : G  I  A  P  N  I  T  E  K  G  D  S  K  D  V  S  D  K  K  T  G  L  I  E  Q  E  I  D  V  S  T  A  V  S  S  G  G  E  H  S  D  N  F  T  A  T  P  E  R  Q   : D  C  N  F  A  K  G  R  W  V  I  D  D  S  R  P  L  Y  S  G  F  G  C  K  Q  W  L  S  S  M  W  A  C  R  L  T  Q  R  T  D  F  E  Y  E  K  L  R  W  R  P  K  N  C  E  M  E  D  F  T  G  V  K  F  L  K  R :   M  Q  N  K  T  L  A  F  I  G  D  S  L  G  R  Q  Q  F  Q  S  L  M  C  M  I  S  G  G  K  D  R  P  N  V  L  D  V  G  H  E  Y  G  L  V  Q  S  R  G  S  G  R  P  D  G  W  A  F  R  F  P  D  T  K  T  T  I  L  Y  Y  W  S  A  S  L  C  D  L  T  P  I  N  P  S  D  P  A  T  D  Y  A  M  H  L  D  R  P  P  A  F  L  S  H  F  L  P  R  F  D  V  L  V  L  N  T  G  H  H  W  N  R  G  K  L  K  A  N  R  W  V  M  Y  V  G  G  V  P  N  T  N  R  K  I  V  T  I  G  G  A  K  N  F  T  I  H  S  I  V  N  W  V  N  S  Q  L  P  K  Y  P  H  V  K  A  F  Y  R  T  I  S  P  R  H  F  F  N  G  D  W  N  T  G  G  T  C  D  N  T  T  P  L  S  E  G  K  E  V  L  Q  D  E  S  S  D  Y  D  A  A  R  A  V  R  G  T  D  V  K  L  L  D  I  T  A  L  S  Q  L  R  D  E  G  H  I  S  R  Y  S  I  K  A  T  P  G  V  Q  D  C  L </second_frame>
            <third_frame>   K  N  N  V  H  C  G  G  M  S  S  S  P  N  I  P  K  L  Q  G  *  R  E  V  *  R  C  H  R  S  L  S  S  *  S  D  S  C  V  L  L  F  F  F  W  H  M  *  R  A  Y  F  F  L  L  Q  Y  Y  L  R  I  M  S  C  S  F  L  Q  :  I  L  E  *  K  M  K  K  L  W  E  K  E  A  D  R  S  N  H  K  T  V  L  T  L  N  L  K  N  I  L  L  M  Q  T  L  H  R  *  L  R  *  L  K  S  *  L  L  M  K  K  E  E  :  V  L  L  R  I  S  L  K  K  E  I  Q  K  M  F  Q  T  K  K  L  V  *  *  S  R  K  L  T  F  P  L  L  *  V  L  G  V  N  I  V  T  I  L  Q  Q  P  R  K  D  K  :  I  A  T  L  L  K  A  D  G  S  *  M  I  A  D  L  Y  I  L  D  L  A  V  S  N  G  C  H  L  C  G  L  V  A  *  H  N  V  Q  I  L  N  M  K  S  Y  V  G  D  P  K  I  V  R  W  K  I  L  L  V  L  N  F  *  K   : G  C  K  T  K  L  W  R  L  S  G  I  R  L  V  D  S  N  F  S  H  L  C  V  *  L  V  V  E  K  I  D  L  M  F  L  M  W  G  M  N  M  V  *  C  N  L  V  V  L  V  D  L  M  D  G  L  F  D  F  Q  T  P  K  Q  L  F  F  I  I  G  L  L  V  S  V  T  *  H  L  *  I  H  L  I  L  L  L  I  T  P  C  T  W  T  V  L  Q  H  F  *  V  I  S  F  Q  G  S  M  S  L  F  *  T  Q  D  T  I  G  I  E  E  S  L  R  P  I  D  G  S  C  M  *  V  V  S  L  I  Q  T  G  R  L  *  L  *  V  V  P  R  I  S  Q  S  T  V  L  S  I  G  *  T  H  S  C  Q  N  T  L  M  *  K  H  S  I  G  L  Y  P  P  D  I  S  L  T  E  I  G  T  Q  E  V  H  V  T  T  L  H  H  F  P  K  G  R  R  F  Y  K  T  N  Q  V  T  M  M  Q  H  V  L  L  E  E  Q  T  L  S  F  W  T  S  L  L  Y  P  S  *  E  M  K  V  I  Y  L  D  T  A  S  K  Q  H  Q  V  S  R  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89361" stop="89208"/>
                    <exon start="88836" stop="88678"/>
                    <exon start="88439" stop="88290"/>
                    <exon start="88124" stop="87929"/>
                    <exon start="87517" stop="86749"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1428</number_coding_nucleotides>
                  <number_encoded_amino_acids>476</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASRMKGGLKVSQISLILIGFVCASVLLLAYVKSLLLSSSVLPQNHVLQLSPDLRVKDEEALGEGSGSEQSQDSVNFESEKYPTYANSSPVIKVTEELITHEERGGIAPNITEKGDSKDVSDKKTGLIEQEIDVSTAVSSGGEHSDNFTATPERQDCNFAKGRWVIDDSRPLYSGFGCKQWLSSMWACRLTQRTDFEYEKLRWRPKNCEMEDFTGVKFLKRMQNKTLAFIGDSLGRQQFQSLMCMISGGKDRPNVLDVGHEYGLVQSRGSGRPDGWAFRFPDTKTTILYYWSASLCDLTPINPSDPATDYAMHLDRPPAFLSHFLPRFDVLVLNTGHHWNRGKLKANRWVMYVGGVPNTNRKIVTIGGAKNFTIHSIVNWVNSQLPKYPHVKAFYRTISPRHFFNGDWNTGGTCDNTTPLSEGKEVLQDESSDYDAARAVRGTDVKLLDITALSQLRDEGHISRYSIKATPGVQDCL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="93805" PGL_stop="98199"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93805" e_stop="93956"/>
            <exon e_start="94104" e_stop="94198"/>
            <exon e_start="94868" e_stop="94949"/>
            <exon e_start="95415" e_stop="95511"/>
            <exon e_start="95883" e_stop="95941"/>
            <exon e_start="96074" e_stop="96156"/>
            <exon e_start="96910" e_stop="97005"/>
            <exon e_start="97490" e_stop="97549"/>
            <exon e_start="97893" e_stop="98199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.169" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.734" e_score="1.000"/>
          <exon-intron don_prob="0.712" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.816" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93805" e_stop="93956" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93957" i_stop="94103" i_length="147"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94104" e_stop="94198" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.964">
            <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94868" e_stop="94949" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.169" acc_prob="0.921">
            <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95415" e_stop="95511" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.891" acc_prob="0.734">
            <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95883" e_stop="95941" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.712" acc_prob="0.992">
            <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="96074" e_stop="96156" e_length="83"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="96910" e_stop="97005" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.904" acc_prob="0.816">
            <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="97490" e_stop="97549" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="97893" e_stop="98199" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93805" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="98199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93808" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="97942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93815" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="97925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93819" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93823" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="98119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93827" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="97965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93828" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="98039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93828" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="97987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93828" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93828" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93828" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93834" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="97986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93834" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="96934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93843" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93846" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281357" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93853" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93856" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="98099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93856" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="97980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93857" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93857" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93862" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93870" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93871" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="96970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93872" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93875" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93898" stop="93956"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94878" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="98185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94878" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="98039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94909" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="98190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94909" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="98099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95489" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="98030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTGAAAAAAACCCTAAATCAGTTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG : AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT : GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG : CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG : GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG : TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG : GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG : ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG : GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCTATCTACGATCTTTT</gDNA_template>
            <first_frame> Y  *  K  K  P  *  I  S  S  T  K  I  F  R  S  N  *  E  N  Q  T  V  E  S  N  N  E  S  R  K  W  R  R  I  R  S  S  H  Y  D  L  L  T  G  R  S  S  L  S  S  R :   I  C  F  *  G  C  E  G  S  W  N  H  I  Y  W  C  P  W  K  G  L  C  L  C  C  Y  S  E  E  S  P   : *  Q  A  I  G  S  D  Q  C  I  P  F  V  P  N  Y  Q  V  S  W  T  I  G  Y  W  H  D  S :   *  C  K  N  F  G  S  T  S  S  K  *  S  C  *  V  S  L  *  I  W  L  *  N  A  S  R  C  T  V  *  M  :  D  R  G  Q  V  P  G  L  H  T  A  C  L  Y  E  T  P  W  S  S :   C  Y  D  F  G  H  *  *  G  E  R  A  P  A  L  Q  M  *  P  C  W  S  F  F  W  S  *   : G  Y  K  C  R  I  *  R  A  R  G  N  *  L  F  G  E  E  N  E  K  *  P  C  V  L  L  *  G  N  C  S   : D  H  Y  F  C  S  S  I  C  S  A  R  R  F  Q  G  Q  *  N  *   : G  W  C  C  E  K  R  R  S  R  L  *  S  V  N  Y  *  G  N  R  R  A  L  N  S  H  Q  *  A  *  L  I  S  H  M  I  H  S  P  F  S  V  R  N  V  C  F  A  I  K  T  C  K  R  D  P  I  *  L  L  V  A  I  N  P  S  A  Y  A  D  K  *  V  S  I  C  R  M  *  H  F  M  G  S  S  *  F  Q  Q  N  V  *  I  L  L  S  L  S  I  Y  D  L   </first_frame>
            <second_frame>  T  E  K  N  P  K  S  V  R  Q  K  F  S  D  R  T  E  K  I  K  P  *  N  R  T  M  S  R  G  S  G  G  G  Y  D  R  H  I  T  I  F  S  P  E  G  R  L  F  Q  V   : E  Y  A  F  K  A  V  K  A  A  G  I  T  S  I  G  V  R  G  K  D  S  V  C  V  V  T  Q  K  K  V  P  :  D  K  L  L  D  Q  T  S  V  S  H  L  F  P  I  T  K  Y  L  G  L  L  A  T  G  M  T   : A  D  A  R  T  L  V  Q  Q  A  R  N  E  A  A  E  F  R  F  K  Y  G  Y  E  M  P  A  D  V  L  S  K  W :   I  A  D  K  S  Q  V  Y  T  Q  H  A  Y  M  R  P  L  G  V   : V  A  M  I  L  G  I  D  E  E  K  G  P  Q  L  F  K  C  D  P  A  G  H  F  F  G  H  K  :  A  T  S  A  G  S  K  E  Q  E  A  I  N  F  L  E  K  K  M  K  N  N  P  A  F  S  Y  E  E  T  V  Q  :  T  T  I  S  A  L  Q  S  V  L  Q  E  D  F  K  A  S  E  I  E  :  V  G  V  V  R  K  E  D  P  V  F  R  V  L  T  T  E  E  I  D  E  H  L  T  A  I  S  E  R  D  *  L  A  T  *  Y  T  V  R  F  L  L  E  M  Y  V  L  L  S  R  L  A  K  E  I  P  F  D  C  *  L  L  S  I  L  L  H  M  L  I  N  E  F  L  F  V  E  C  N  I  S  W  D  L  L  S  F  N  K  T  F  E  S  F  Y  H  Y  L  S  T  I  F  </second_frame>
            <third_frame>   L  K  K  T  L  N  Q  F  D  K  N  F  Q  I  E  L  R  K  S  N  R  R  I  E  Q  *  V  E  E  V  E  A  D  T  I  V  T  L  R  S  S  H  R  K  V  V  S  F  K  S  :  N  M  L  L  R  L  *  R  Q  L  E  S  H  L  L  V  S  V  E  R  T  L  F  V  L  L  L  R  R  K  S  L :   T  S  Y  W  I  R  P  V  Y  P  I  C  S  Q  L  P  S  I  L  D  Y  W  L  L  A  *  Q  :  L  M  Q  E  L  W  F  N  K  L  E  M  K  L  L  S  F  A  L  N  M  V  M  K  C  Q  Q  M  Y  C  L  N   : G  S  R  T  S  P  R  F  T  H  S  M  P  I  *  D  P  L  E  *  :  L  L  *  F  W  A  L  M  R  R  K  G  P  S  S  S  N  V  T  L  L  V  I  F  L  V  I  R :   L  Q  V  P  D  L  K  S  K  R  Q  L  T  F  W  R  R  K  *  K  I  T  L  R  S  P  M  R  K  L  F  R :   P  L  F  L  L  F  N  L  F  C  K  K  I  S  R  P  V  K  L  R :   L  V  L  *  E  K  K  I  P  S  L  E  C  *  L  L  R  K  S  T  S  T  *  Q  P  S  V  S  V  T  D  *  P  H  D  T  Q  S  V  F  C  *  K  C  M  F  C  Y  Q  D  L  Q  K  R  S  H  L  I  V  S  C  Y  Q  S  F  C  I  C  *  *  M  S  F  Y  L  S  N  V  T  F  H  G  I  F  L  V  S  T  K  R  L  N  P  S  I  I  I  Y  L  R  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93872" stop="93956"/>
                    <exon start="94104" stop="94198"/>
                    <exon start="94868" stop="94949"/>
                    <exon start="95415" stop="95511"/>
                    <exon start="95883" stop="95941"/>
                    <exon start="96074" stop="96156"/>
                    <exon start="96910" stop="97005"/>
                    <exon start="97490" stop="97549"/>
                    <exon start="97893" stop="97985"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRTMSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPADVLSKWIADKSQVYTQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNNPAFSYEETVQTTISALQSVLQEDFKASEIEVGVVRKEDPVFRVLTTEEIDEHLTAISERD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="93828" e_stop="93926"/>
            <exon e_start="94104" e_stop="94198"/>
            <exon e_start="94868" e_stop="94949"/>
            <exon e_start="95415" e_stop="95511"/>
            <exon e_start="95883" e_stop="95941"/>
            <exon e_start="96074" e_stop="96156"/>
            <exon e_start="96910" e_stop="97005"/>
            <exon e_start="97490" e_stop="97549"/>
            <exon e_start="97893" e_stop="98190"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.929"/>
          <exon-intron don_prob="0.958" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.169" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.734" e_score="1.000"/>
          <exon-intron don_prob="0.712" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.816" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="93828" e_stop="93926" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93927" i_stop="94103" i_length="177"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94104" e_stop="94198" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.964">
            <gDNA_intron_boundary i_start="94199" i_stop="94867" i_length="669"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94868" e_stop="94949" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.169" acc_prob="0.921">
            <gDNA_intron_boundary i_start="94950" i_stop="95414" i_length="465"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95415" e_stop="95511" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.891" acc_prob="0.734">
            <gDNA_intron_boundary i_start="95512" i_stop="95882" i_length="371"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95883" e_stop="95941" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.712" acc_prob="0.992">
            <gDNA_intron_boundary i_start="95942" i_stop="96073" i_length="132"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="96074" e_stop="96156" e_length="83"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96157" i_stop="96909" i_length="753"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="96910" e_stop="97005" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.904" acc_prob="0.816">
            <gDNA_intron_boundary i_start="97006" i_stop="97489" i_length="484"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="97490" e_stop="97549" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="97893" e_stop="98190" e_length="298"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93828" stop="93926"/>
              <exon start="94104" stop="94198"/>
              <exon start="94868" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="97946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94878" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="98185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94878" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="98039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94909" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="98190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94909" stop="94949"/>
              <exon start="95415" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="98099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95489" stop="95511"/>
              <exon start="95883" stop="95941"/>
              <exon start="96074" stop="96156"/>
              <exon start="96910" stop="97005"/>
              <exon start="97490" stop="97549"/>
              <exon start="97893" stop="98030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCT : AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT : GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG : CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG : GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG : TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG : GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG : ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG : GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCTATCTA</gDNA_template>
            <first_frame> F  D  K  N  F  Q  I  E  L  R  K  S  N  R  R  I  E  Q  *  V  E  E  V  E  A  D  T  I  V  T  L  R  S  :  N  M  L  L  R  L  *  R  Q  L  E  S  H  L  L  V  S  V  E  R  T  L  F  V  L  L  L  R  R  K  S  L :   T  S  Y  W  I  R  P  V  Y  P  I  C  S  Q  L  P  S  I  L  D  Y  W  L  L  A  *  Q  :  L  M  Q  E  L  W  F  N  K  L  E  M  K  L  L  S  F  A  L  N  M  V  M  K  C  Q  Q  M  Y  C  L  N   : G  S  R  T  S  P  R  F  T  H  S  M  P  I  *  D  P  L  E  *  :  L  L  *  F  W  A  L  M  R  R  K  G  P  S  S  S  N  V  T  L  L  V  I  F  L  V  I  R :   L  Q  V  P  D  L  K  S  K  R  Q  L  T  F  W  R  R  K  *  K  I  T  L  R  S  P  M  R  K  L  F  R :   P  L  F  L  L  F  N  L  F  C  K  K  I  S  R  P  V  K  L  R :   L  V  L  *  E  K  K  I  P  S  L  E  C  *  L  L  R  K  S  T  S  T  *  Q  P  S  V  S  V  T  D  *  P  H  D  T  Q  S  V  F  C  *  K  C  M  F  C  Y  Q  D  L  Q  K  R  S  H  L  I  V  S  C  Y  Q  S  F  C  I  C  *  *  M  S  F  Y  L  S  N  V  T  F  H  G  I  F  L  V  S  T  K  R  L  N  P  S  I  I  I  Y  L </first_frame>
            <second_frame>  S  T  K  I  F  R  S  N  *  E  N  Q  T  V  E  S  N  N  E  S  R  K  W  R  R  I  R  S  S  H  Y  D  L :   I  C  F  *  G  C  E  G  S  W  N  H  I  Y  W  C  P  W  K  G  L  C  L  C  C  Y  S  E  E  S  P   : *  Q  A  I  G  S  D  Q  C  I  P  F  V  P  N  Y  Q  V  S  W  T  I  G  Y  W  H  D  S :   *  C  K  N  F  G  S  T  S  S  K  *  S  C  *  V  S  L  *  I  W  L  *  N  A  S  R  C  T  V  *  M  :  D  R  G  Q  V  P  G  L  H  T  A  C  L  Y  E  T  P  W  S  S :   C  Y  D  F  G  H  *  *  G  E  R  A  P  A  L  Q  M  *  P  C  W  S  F  F  W  S  *   : G  Y  K  C  R  I  *  R  A  R  G  N  *  L  F  G  E  E  N  E  K  *  P  C  V  L  L  *  G  N  C  S   : D  H  Y  F  C  S  S  I  C  S  A  R  R  F  Q  G  Q  *  N  *   : G  W  C  C  E  K  R  R  S  R  L  *  S  V  N  Y  *  G  N  R  R  A  L  N  S  H  Q  *  A  *  L  I  S  H  M  I  H  S  P  F  S  V  R  N  V  C  F  A  I  K  T  C  K  R  D  P  I  *  L  L  V  A  I  N  P  S  A  Y  A  D  K  *  V  S  I  C  R  M  *  H  F  M  G  S  S  *  F  Q  Q  N  V  *  I  L  L  S  L  S  I   </second_frame>
            <third_frame>   R  Q  K  F  S  D  R  T  E  K  I  K  P  *  N  R  T  M  S  R  G  S  G  G  G  Y  D  R  H  I  T  I   : *  Y  A  F  K  A  V  K  A  A  G  I  T  S  I  G  V  R  G  K  D  S  V  C  V  V  T  Q  K  K  V  P  :  D  K  L  L  D  Q  T  S  V  S  H  L  F  P  I  T  K  Y  L  G  L  L  A  T  G  M  T   : A  D  A  R  T  L  V  Q  Q  A  R  N  E  A  A  E  F  R  F  K  Y  G  Y  E  M  P  A  D  V  L  S  K  W :   I  A  D  K  S  Q  V  Y  T  Q  H  A  Y  M  R  P  L  G  V   : V  A  M  I  L  G  I  D  E  E  K  G  P  Q  L  F  K  C  D  P  A  G  H  F  F  G  H  K  :  A  T  S  A  G  S  K  E  Q  E  A  I  N  F  L  E  K  K  M  K  N  N  P  A  F  S  Y  E  E  T  V  Q  :  T  T  I  S  A  L  Q  S  V  L  Q  E  D  F  K  A  S  E  I  E  :  V  G  V  V  R  K  E  D  P  V  F  R  V  L  T  T  E  E  I  D  E  H  L  T  A  I  S  E  R  D  *  L  A  T  *  Y  T  V  R  F  L  L  E  M  Y  V  L  L  S  R  L  A  K  E  I  P  F  D  C  *  L  L  S  I  L  L  H  M  L  I  N  E  F  L  F  V  E  C  N  I  S  W  D  L  L  S  F  N  K  T  F  E  S  F  Y  H  Y  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94106" stop="94198"/>
                    <exon start="94868" stop="94949"/>
                    <exon start="95415" stop="95511"/>
                    <exon start="95883" stop="95941"/>
                    <exon start="96074" stop="96156"/>
                    <exon start="96910" stop="97005"/>
                    <exon start="97490" stop="97549"/>
                    <exon start="97893" stop="97985"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPADVLSKWIADKSQVYTQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNNPAFSYEETVQTTISALQSVLQEDFKASEIEVGVVRKEDPVFRVLTTEEIDEHLTAISERD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="97892" e_stop="98199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="97892" e_stop="98199" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97892" stop="98199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220471" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCTATCTACGATCTTTT</gDNA_template>
            <first_frame> G  W  C  C  E  K  R  R  S  R  L  *  S  V  N  Y  *  G  N  R  R  A  L  N  S  H  Q  *  A  *  L  I  S  H  M  I  H  S  P  F  S  V  R  N  V  C  F  A  I  K  T  C  K  R  D  P  I  *  L  L  V  A  I  N  P  S  A  Y  A  D  K  *  V  S  I  C  R  M  *  H  F  M  G  S  S  *  F  Q  Q  N  V  *  I  L  L  S  L  S  I  Y  D  L   </first_frame>
            <second_frame>  V  G  V  V  R  K  E  D  P  V  F  R  V  L  T  T  E  E  I  D  E  H  L  T  A  I  S  E  R  D  *  L  A  T  *  Y  T  V  R  F  L  L  E  M  Y  V  L  L  S  R  L  A  K  E  I  P  F  D  C  *  L  L  S  I  L  L  H  M  L  I  N  E  F  L  F  V  E  C  N  I  S  W  D  L  L  S  F  N  K  T  F  E  S  F  Y  H  Y  L  S  T  I  F  </second_frame>
            <third_frame>   L  V  L  *  E  K  K  I  P  S  L  E  C  *  L  L  R  K  S  T  S  T  *  Q  P  S  V  S  V  T  D  *  P  H  D  T  Q  S  V  F  C  *  K  C  M  F  C  Y  Q  D  L  Q  K  R  S  H  L  I  V  S  C  Y  Q  S  F  C  I  C  *  *  M  S  F  Y  L  S  N  V  T  F  H  G  I  F  L  V  S  T  K  R  L  N  P  S  I  I  I  Y  L  R  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0032P11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="97485" e_stop="97549"/>
            <exon e_start="97893" e_stop="98199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.985"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="97485" e_stop="97549" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="97550" i_stop="97892" i_length="343"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="97893" e_stop="98199" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97485" stop="97549"/>
              <exon start="97893" stop="98199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220603" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG : GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCTATCTACGATCTTTT</gDNA_template>
            <first_frame> C  R  P  L  F  L  L  F  N  L  F  C  K  K  I  S  R  P  V  K  L  R :   L  V  L  *  E  K  K  I  P  S  L  E  C  *  L  L  R  K  S  T  S  T  *  Q  P  S  V  S  V  T  D  *  P  H  D  T  Q  S  V  F  C  *  K  C  M  F  C  Y  Q  D  L  Q  K  R  S  H  L  I  V  S  C  Y  Q  S  F  C  I  C  *  *  M  S  F  Y  L  S  N  V  T  F  H  G  I  F  L  V  S  T  K  R  L  N  P  S  I  I  I  Y  L  R  S  F </first_frame>
            <second_frame>  A  D  H  Y  F  C  S  S  I  C  S  A  R  R  F  Q  G  Q  *  N  *   : G  W  C  C  E  K  R  R  S  R  L  *  S  V  N  Y  *  G  N  R  R  A  L  N  S  H  Q  *  A  *  L  I  S  H  M  I  H  S  P  F  S  V  R  N  V  C  F  A  I  K  T  C  K  R  D  P  I  *  L  L  V  A  I  N  P  S  A  Y  A  D  K  *  V  S  I  C  R  M  *  H  F  M  G  S  S  *  F  Q  Q  N  V  *  I  L  L  S  L  S  I  Y  D  L   </second_frame>
            <third_frame>   Q  T  T  I  S  A  L  Q  S  V  L  Q  E  D  F  K  A  S  E  I  E  :  V  G  V  V  R  K  E  D  P  V  F  R  V  L  T  T  E  E  I  D  E  H  L  T  A  I  S  E  R  D  *  L  A  T  *  Y  T  V  R  F  L  L  E  M  Y  V  L  L  S  R  L  A  K  E  I  P  F  D  C  *  L  L  S  I  L  L  H  M  L  I  N  E  F  L  F  V  E  C  N  I  S  W  D  L  L  S  F  N  K  T  F  E  S  F  Y  H  Y  L  S  T  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0032P11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="100224" PGL_stop="99673"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100224" e_stop="99673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="100224" e_stop="99673" e_length="552"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100224" stop="99673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100197" stop="99673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATCATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTTTCTCTCTCATTGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGTCATATATTTTGGTTGTTTTTTTAATCCAAAATTGAATCAACCAGAATTCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATATTAAAAAAATATTGTTTATATTTTTCAATTTCCGTTATGATTTACTCTCCAATTGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATTCTTTAATTTATTTATTACTCAACAAATAGTGTATAATGTATGATTCGCTGCTAAAAAGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTTCTCAAATTCAGAACGCAAATGTAAAATCTTTGTTTACTCGTGAGGATCTTGAAAAGGACGACGAAGATCGGATA</gDNA_template>
            <first_frame> K  N  H  S  L  S  Y  L  S  F  Q  I  V  N  S  L  S  H  L  I  F  F  L  S  H  C  Y  L  F  *  F  S  S  N  I  Q  V  A  N  I  F  L  S  Y  I  L  V  V  F  L  I  Q  N  *  I  N  Q  N  S  F  D  *  G  I  S  N  L  Y  P  I  F  R  F  L  F  *  F  Y  F  C  L  N  I  K  K  I  L  F  I  F  F  N  F  R  Y  D  L  L  S  N  C  *  I  Q  E  A  Y  *  R  Y  S  S  *  S  T  N  F  W  *  F  F  I  L  *  F  I  Y  Y  S  T  N  S  V  *  C  M  I  R  C  *  K  E  G  R  K  R  V  R  T  F  T  R  L  I  G  V  Q  N  L  S  Q  I  Q  N  A  N  V  K  S  L  F  T  R  E  D  L  E  K  D  D  E  D  R  I </first_frame>
            <second_frame>  K  I  I  L  S  H  I  Y  L  F  K  L  L  I  L  S  P  I  *  F  F  F  S  L  I  V  I  F  S  D  F  P  P  T  F  K  L  Q  I  F  F  C  H  I  F  W  L  F  F  *  S  K  I  E  S  T  R  I  P  L  I  K  V  S  L  I  F  I  L  F  S  D  F  F  S  N  F  I  F  V  *  I  L  K  K  Y  C  L  Y  F  S  I  S  V  M  I  Y  S  P  I  A  E  S  K  R  L  T  R  G  I  H  L  N  Q  P  I  S  G  D  F  S  F  F  N  L  F  I  T  Q  Q  I  V  Y  N  V  *  F  A  A  K  K  R  E  E  R  G  *  E  H  L  Q  D  S  L  V  C  K  T  F  L  K  F  R  T  Q  M  *  N  L  C  L  L  V  R  I  L  K  R  T  T  K  I  G   </second_frame>
            <third_frame>   K  S  F  S  L  I  F  I  F  S  N  C  *  F  S  L  P  F  N  F  F  S  L  S  L  L  S  F  L  I  F  L  Q  H  S  S  C  K  Y  F  F  V  I  Y  F  G  C  F  F  N  P  K  L  N  Q  P  E  F  L  *  L  R  Y  L  *  S  L  S  Y  F  Q  I  S  F  L  I  L  F  L  F  K  Y  *  K  N  I  V  Y  I  F  Q  F  P  L  *  F  T  L  Q  L  L  N  P  R  G  L  L  E  V  F  I  L  I  N  Q  F  L  V  I  F  H  S  L  I  Y  L  L  L  N  K  *  C  I  M  Y  D  S  L  L  K  R  G  K  K  E  G  K  N  I  Y  K  T  H  W  C  A  K  P  F  S  N  S  E  R  K  C  K  I  F  V  Y  S  *  G  S  *  K  G  R  R  R  S  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0032P11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="108699" PGL_stop="104924"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108695" e_stop="108522"/>
            <exon e_start="107679" e_stop="107629"/>
            <exon e_start="107506" e_stop="107447"/>
            <exon e_start="105906" e_stop="105835"/>
            <exon e_start="105751" e_stop="105448"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.573" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108695" e_stop="108522" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108521" i_stop="107680" i_length="842"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107679" e_stop="107629" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.864" acc_prob="0.999">
            <gDNA_intron_boundary i_start="107628" i_stop="107507" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107506" e_stop="107447" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="107446" i_stop="105907" i_length="1540"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105906" e_stop="105835" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.573">
            <gDNA_intron_boundary i_start="105834" i_stop="105752" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105751" e_stop="105448" e_length="304"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108695" stop="108522"/>
              <exon start="107679" stop="107629"/>
              <exon start="107506" stop="107447"/>
              <exon start="105906" stop="105835"/>
              <exon start="105751" stop="105448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108694" stop="108522"/>
              <exon start="107679" stop="107629"/>
              <exon start="107506" stop="107447"/>
              <exon start="105906" stop="105835"/>
              <exon start="105751" stop="105624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108606" stop="108522"/>
              <exon start="107679" stop="107629"/>
              <exon start="107506" stop="107447"/>
              <exon start="105906" stop="105835"/>
              <exon start="105751" stop="105622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108576" stop="108522"/>
              <exon start="107679" stop="107629"/>
              <exon start="107506" stop="107447"/>
              <exon start="105906" stop="105835"/>
              <exon start="105751" stop="105470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107667" stop="107629"/>
              <exon start="107506" stop="107447"/>
              <exon start="105906" stop="105835"/>
              <exon start="105751" stop="105502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309616" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATTTTGAAAAATCTGTGAACTCTTCGAAGCTTAAAAATTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGG : ATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGT : GTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGG : GTGTTTGCAACCATGCATTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTG : ATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCGAATTTACATATTTTCTTTGTTCTTCAGTGTTCATTACT</gDNA_template>
            <first_frame> I  I  L  K  N  L  *  T  L  R  S  L  K  I  Q  W  R  H  R  I  P  M  C  R  W  F  P  P  A  R  V  Q  P  E  L  E  R  L  T  K  S  R  S  D  L  R  S  K  S  G  T  P  F  L  S  G  L  G  :  I  L  W  *  I  I  V  P  S  V  G  I  T  S  W  I  C  :  V  S  S  V  K  L  I  K  L  A  Q  Q  V  R  N  A  Q  L  L  G  :  V  F  A  T  M  H  S  T  S  I  A  L  A  G  G  S  R  L  V  K  C  V  H  L  :  I  T  A  S  G  S  F  R  S  M  V  T  R  I  Y  C  W  C  T  V  N  E  R  S  F  K  T  M  V  I  T  V  F  L  S  S  T  L  K  R  T  I  L  L  P  Y  V  P  F  V  F  A  L  Q  I  S  K  A  M  T  R  T  M  F  L  I  V  A  C  L  F  *  V  A  S  K  E  *  N  V  F  G  D  *  P  F  L  I  R  I  Y  I  F  S  L  F  F  S  V  H  Y  </first_frame>
            <second_frame>  *  F  *  K  I  C  E  L  F  E  A  *  K  F  N  G  V  T  G  Y  R  C  A  D  G  S  R  R  R  E  F  N  R  S  W  N  V  *  Q  K  A  E  A  I  *  D  Q  K  V  E  R  R  F  S  L  G  L  G :   Y  C  G  R  *  L  C  H  L  *  E  S  H  H  G  S  V :   Y  R  V  S  S  *  S  S  *  R  N  K  *  G  M  H  S  C  L  G :   C  L  Q  P  C  I  P  L  P  L  H  *  Q  V  A  Q  D  S  S  S  V  S  T  * :   *  Q  R  V  G  V  S  E  V  W  S  L  E  F  T  V  G  V  Q  *  M  R  G  A  S  K  L  W  S  L  Q  F  F  C  H  R  R  *  K  E  Q  F  C  C  L  M  F  L  S  F  L  L  C  K  Y  P  K  Q  *  L  E  L  C  F  *  L  S  H  V  C  F  R  L  P  Q  K  N  E  M  C  L  E  T  N  H  F  L  F  E  F  T  Y  F  L  C  S  S  V  F  I  T </second_frame>
            <third_frame>   N  F  E  K  S  V  N  S  S  K  L  K  N  S  M  A  S  P  D  T  D  V  P  M  V  P  A  G  E  S  S  T  G  A  G  T  S  N  K  K  P  K  R  F  E  I  K  K  W  N  A  V  S  L  W  A  W   : D  I  V  V  D  N  C  A  I  C  R  N  H  I  M  D  L   : C  I  E  C  Q  A  N  Q  A  S  A  T  S  E  E  C  T  V  A  W   : G  V  C  N  H  A  F  H  F  H  C  I  S  R  W  L  K  T  R  Q  V  C  P  L   : D  N  S  E  W  E  F  Q  K  Y  G  H  *  N  L  L  L  V  Y  S  E  *  E  E  L  Q  N  Y  G  H  Y  S  F  S  V  I  D  V  E  K  N  N  S  A  A  L  C  S  F  R  F  C  S  A  N  I  Q  S  N  D  S  N  Y  V  F  N  C  R  M  S  V  L  G  C  L  K  R  M  K  C  V  W  R  L  T  I  S  Y  S  N  L  H  I  F  F  V  L  Q  C  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108693" stop="108522"/>
                    <exon start="107679" stop="107629"/>
                    <exon start="107506" stop="107447"/>
                    <exon start="105906" stop="105835"/>
                    <exon start="105751" stop="105714"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFEKSVNSSKLKNSMASPDTDVPMVPAGESSTGAGTSNKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107667" stop="107629"/>
                    <exon start="107506" stop="107447"/>
                    <exon start="105906" stop="105835"/>
                    <exon start="105751" stop="105536"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIVPSVGITSWICVSSVKLIKLAQQVRNAQLLGVFATMHSTSIALAGGSRLVKCVHLITASGSFRSMVTRIYCWCTVNERSFKTMVITVFLSSTLKRTILLPYVPFVFALQISKAMTRTMFLIVACLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108694" e_stop="108522"/>
            <exon e_start="107679" e_stop="107629"/>
            <exon e_start="107506" e_stop="107447"/>
            <exon e_start="105906" e_stop="105835"/>
            <exon e_start="105751" e_stop="105460"/>
            <exon e_start="104937" e_stop="104924"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.988"/>
          <exon-intron don_prob="0.864" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.573" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.717" e_score="0.982"/>
          <exon-only e_score="0.786"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="108694" e_stop="108522" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108521" i_stop="107680" i_length="842"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107679" e_stop="107629" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.864" acc_prob="0.999">
            <gDNA_intron_boundary i_start="107628" i_stop="107507" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107506" e_stop="107447" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="107446" i_stop="105907" i_length="1540"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105906" e_stop="105835" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.573">
            <gDNA_intron_boundary i_start="105834" i_stop="105752" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="105751" e_stop="105460" e_length="292"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.717">
            <gDNA_intron_boundary i_start="105459" i_stop="104938" i_length="522"/>
          </intron>
          <exon e_serial="6" e_score="0.786">
            <gDNA_exon_boundary e_start="104937" e_stop="104924" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108694" stop="108522"/>
              <exon start="107679" stop="107629"/>
              <exon start="107506" stop="107447"/>
              <exon start="105906" stop="105835"/>
              <exon start="105751" stop="105624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108606" stop="108522"/>
              <exon start="107679" stop="107629"/>
              <exon start="107506" stop="107447"/>
              <exon start="105906" stop="105835"/>
              <exon start="105751" stop="105622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108576" stop="108522"/>
              <exon start="107679" stop="107629"/>
              <exon start="107506" stop="107447"/>
              <exon start="105906" stop="105835"/>
              <exon start="105751" stop="105470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107667" stop="107629"/>
              <exon start="107506" stop="107447"/>
              <exon start="105906" stop="105835"/>
              <exon start="105751" stop="105502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105889" stop="105835"/>
              <exon start="105751" stop="105460"/>
              <exon start="104937" stop="104924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222129" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATTTTGAAAAATCTGTGAACTCTTCGAAGCTTAAAAATTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGG : ATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGT : GTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGG : GTGTTTGCAACCATGCATTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTG : ATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCGAATTTACATATTTTCTTTGTTCTTCA : ATAAAAAGAAAAGA</gDNA_template>
            <first_frame> *  F  *  K  I  C  E  L  F  E  A  *  K  F  N  G  V  T  G  Y  R  C  A  D  G  S  R  R  R  E  F  N  R  S  W  N  V  *  Q  K  A  E  A  I  *  D  Q  K  V  E  R  R  F  S  L  G  L  G :   Y  C  G  R  *  L  C  H  L  *  E  S  H  H  G  S  V :   Y  R  V  S  S  *  S  S  *  R  N  K  *  G  M  H  S  C  L  G :   C  L  Q  P  C  I  P  L  P  L  H  *  Q  V  A  Q  D  S  S  S  V  S  T  * :   *  Q  R  V  G  V  S  E  V  W  S  L  E  F  T  V  G  V  Q  *  M  R  G  A  S  K  L  W  S  L  Q  F  F  C  H  R  R  *  K  E  Q  F  C  C  L  M  F  L  S  F  L  L  C  K  Y  P  K  Q  *  L  E  L  C  F  *  L  S  H  V  C  F  R  L  P  Q  K  N  E  M  C  L  E  T  N  H  F  L  F  E  F  T  Y  F  L  C  S  S  :  I  K  R  K   </first_frame>
            <second_frame>  N  F  E  K  S  V  N  S  S  K  L  K  N  S  M  A  S  P  D  T  D  V  P  M  V  P  A  G  E  S  S  T  G  A  G  T  S  N  K  K  P  K  R  F  E  I  K  K  W  N  A  V  S  L  W  A  W   : D  I  V  V  D  N  C  A  I  C  R  N  H  I  M  D  L   : C  I  E  C  Q  A  N  Q  A  S  A  T  S  E  E  C  T  V  A  W   : G  V  C  N  H  A  F  H  F  H  C  I  S  R  W  L  K  T  R  Q  V  C  P  L   : D  N  S  E  W  E  F  Q  K  Y  G  H  *  N  L  L  L  V  Y  S  E  *  E  E  L  Q  N  Y  G  H  Y  S  F  S  V  I  D  V  E  K  N  N  S  A  A  L  C  S  F  R  F  C  S  A  N  I  Q  S  N  D  S  N  Y  V  F  N  C  R  M  S  V  L  G  C  L  K  R  M  K  C  V  W  R  L  T  I  S  Y  S  N  L  H  I  F  F  V  L  Q :   *  K  E  K  </second_frame>
            <third_frame>   I  L  K  N  L  *  T  L  R  S  L  K  I  Q  W  R  H  R  I  P  M  C  R  W  F  P  P  A  R  V  Q  P  E  L  E  R  L  T  K  S  R  S  D  L  R  S  K  S  G  T  P  F  L  S  G  L  G  :  I  L  W  *  I  I  V  P  S  V  G  I  T  S  W  I  C  :  V  S  S  V  K  L  I  K  L  A  Q  Q  V  R  N  A  Q  L  L  G  :  V  F  A  T  M  H  S  T  S  I  A  L  A  G  G  S  R  L  V  K  C  V  H  L  :  I  T  A  S  G  S  F  R  S  M  V  T  R  I  Y  C  W  C  T  V  N  E  R  S  F  K  T  M  V  I  T  V  F  L  S  S  T  L  K  R  T  I  L  L  P  Y  V  P  F  V  F  A  L  Q  I  S  K  A  M  T  R  T  M  F  L  I  V  A  C  L  F  *  V  A  S  K  E  *  N  V  F  G  D  *  P  F  L  I  R  I  Y  I  F  S  L  F  F   : N  K  K  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108693" stop="108522"/>
                    <exon start="107679" stop="107629"/>
                    <exon start="107506" stop="107447"/>
                    <exon start="105906" stop="105835"/>
                    <exon start="105751" stop="105714"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFEKSVNSSKLKNSMASPDTDVPMVPAGESSTGAGTSNKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107667" stop="107629"/>
                    <exon start="107506" stop="107447"/>
                    <exon start="105906" stop="105835"/>
                    <exon start="105751" stop="105536"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIVPSVGITSWICVSSVKLIKLAQQVRNAQLLGVFATMHSTSIALAGGSRLVKCVHLITASGSFRSMVTRIYCWCTVNERSFKTMVITVFLSSTLKRTILLPYVPFVFALQISKAMTRTMFLIVACLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="108699" e_stop="108522"/>
            <exon e_start="107679" e_stop="107629"/>
            <exon e_start="107506" e_stop="107447"/>
            <exon e_start="105866" e_stop="105835"/>
            <exon e_start="105751" e_stop="105485"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.972"/>
          <exon-intron don_prob="0.864" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.066" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.573" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="108699" e_stop="108522" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108521" i_stop="107680" i_length="842"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107679" e_stop="107629" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.864" acc_prob="0.999">
            <gDNA_intron_boundary i_start="107628" i_stop="107507" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107506" e_stop="107447" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.066">
            <gDNA_intron_boundary i_start="107446" i_stop="105867" i_length="1580"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105866" e_stop="105835" e_length="32"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.573">
            <gDNA_intron_boundary i_start="105834" i_stop="105752" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105751" e_stop="105485" e_length="267"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108699" stop="108522"/>
              <exon start="107679" stop="107629"/>
              <exon start="107506" stop="107447"/>
              <exon start="105866" stop="105835"/>
              <exon start="105751" stop="105485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713837" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAATAATTTTGAAAAATCTGTGAACTCTTCGAAGCTTAAAAATTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGG : ATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGT : GTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGG : GTGGCTCAAGACTCGTCAAGTGTGTCCACTTG : ATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCGA</gDNA_template>
            <first_frame> R  N  N  F  E  K  S  V  N  S  S  K  L  K  N  S  M  A  S  P  D  T  D  V  P  M  V  P  A  G  E  S  S  T  G  A  G  T  S  N  K  K  P  K  R  F  E  I  K  K  W  N  A  V  S  L  W  A  W   : D  I  V  V  D  N  C  A  I  C  R  N  H  I  M  D  L   : C  I  E  C  Q  A  N  Q  A  S  A  T  S  E  E  C  T  V  A  W   : G  G  S  R  L  V  K  C  V  H  L  :  I  T  A  S  G  S  F  R  S  M  V  T  R  I  Y  C  W  C  T  V  N  E  R  S  F  K  T  M  V  I  T  V  F  L  S  S  T  L  K  R  T  I  L  L  P  Y  V  P  F  V  F  A  L  Q  I  S  K  A  M  T  R  T  M  F  L  I  V  A  C  L  F  *  V  A  S  K  E  *  N  V  F  G  D  *  P  F  L  I  R </first_frame>
            <second_frame>  E  I  I  L  K  N  L  *  T  L  R  S  L  K  I  Q  W  R  H  R  I  P  M  C  R  W  F  P  P  A  R  V  Q  P  E  L  E  R  L  T  K  S  R  S  D  L  R  S  K  S  G  T  P  F  L  S  G  L  G  :  I  L  W  *  I  I  V  P  S  V  G  I  T  S  W  I  C  :  V  S  S  V  K  L  I  K  L  A  Q  Q  V  R  N  A  Q  L  L  G  :  V  A  Q  D  S  S  S  V  S  T  * :   *  Q  R  V  G  V  S  E  V  W  S  L  E  F  T  V  G  V  Q  *  M  R  G  A  S  K  L  W  S  L  Q  F  F  C  H  R  R  *  K  E  Q  F  C  C  L  M  F  L  S  F  L  L  C  K  Y  P  K  Q  *  L  E  L  C  F  *  L  S  H  V  C  F  R  L  P  Q  K  N  E  M  C  L  E  T  N  H  F  L  F   </second_frame>
            <third_frame>   K  *  F  *  K  I  C  E  L  F  E  A  *  K  F  N  G  V  T  G  Y  R  C  A  D  G  S  R  R  R  E  F  N  R  S  W  N  V  *  Q  K  A  E  A  I  *  D  Q  K  V  E  R  R  F  S  L  G  L  G :   Y  C  G  R  *  L  C  H  L  *  E  S  H  H  G  S  V :   Y  R  V  S  S  *  S  S  *  R  N  K  *  G  M  H  S  C  L  G :   W  L  K  T  R  Q  V  C  P  L   : D  N  S  E  W  E  F  Q  K  Y  G  H  *  N  L  L  L  V  Y  S  E  *  E  E  L  Q  N  Y  G  H  Y  S  F  S  V  I  D  V  E  K  N  N  S  A  A  L  C  S  F  R  F  C  S  A  N  I  Q  S  N  D  S  N  Y  V  F  N  C  R  M  S  V  L  G  C  L  K  R  M  K  C  V  W  R  L  T  I  S  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0032P11.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108699" stop="108522"/>
                    <exon start="107679" stop="107629"/>
                    <exon start="107506" stop="107447"/>
                    <exon start="105866" stop="105835"/>
                    <exon start="105751" stop="105536"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNNFEKSVNSSKLKNSMASPDTDVPMVPAGESSTGAGTSNKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGGSRLVKCVHLITASGSFRSMVTRIYCWCTVNERSFKTMVITVFLSSTLKRTILLPYVPFVFALQISKAMTRTMFLIVACLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 337 chains have been computed
$ 
$ memory statistics:
$ 661864 bytes spliced alignments in total
$ 201 spliced alignments have been stored
$ 3292 bytes was the average size of a spliced alignment
$ 32560 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1713 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 347 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 23:33:32
-->
