<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 00:19:34"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326114" ref_strand="+" ref_description="SGN-U326114        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | crooked neck protein, putative / cell cycle protein, putative, similar to Swiss-Prot:P17886 crooked neck protein (Drosophila melanogaster) | chr5:16735224-16738450 FORWARD | Aliases: K16L22.5, K16L22_5(evalue: 1e-158, score=555) genbank/nr: gi|30693892|ref|NP_198992.2| cell cycle control crn (crooked neck) protein-related [Arabidopsis thaliana](evalue: 8e-157, score=555)">
      <seq>ataagtttgcacttgatcacataccgaaagggcgagctgaagatttgtacaggaagtttgtggcatttgaaaagcagtatggtgatagagaaggtattgaggacgctatagttggaaaaaggaggtttcagtatgaggatgaagtgaggaagaatccacgtaactatgacacgtggtttgattatattcggctggaagagagcgttggaaataaagagaggattagagaggtttatgagagagccattgctaatgttcctcctgctgaagagaagcgatattggcagcgatacatttacttatggattaattatgcattatatgaagagcttgatgcagaagacatggaaagaaccagagatgtctacagggagtgtcttaagctgattccacatcagaagttttcatttgcaaagatttggttgttggctgcccaatttgagattcggcagttaagactcaaggaggcgcgacttctacttggagaagcaattggaagggctcctaaagacaagatatttaagaagtacatagagatagagctgcattttggaaacatagatcgttgcagaaagctttatgagaagtacttggaatggtctccagaaaattgctatgcttggagcaaattcgccgagttggagaggtccttgtatgaaacggatagagccagggctatttttgagcttgcaattgaccaacctgctctggatatgccggagctattatggaaggcttacatcgactttgaaatttctgagggtgaatttgaaagaactagagcactatatgaaagacttcttaaccgcacaaaacacttgaaggtgtggataagttatgcgaagtttgaggcttcggctatggatccagaggctgaggaagatattgaactgaaaaagaactgcctacaacgcgccagagatgtttttgagagggcagtttcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10612" stop="18804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10912" g_stop="11215" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11216" i_stop="11313" i_length="98">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11314" g_stop="11379" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="370" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11380" i_stop="15814" i_length="4435">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15815" g_stop="15959" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="515" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15960" i_stop="16063" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16064" g_stop="16282" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="734" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16283" i_stop="18175" i_length="1893">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18176" g_stop="18362" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="921" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18363" i_stop="18477" i_length="115">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18478" g_stop="18504" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="922" r_stop="948" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-U326114" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>948</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10912" e_stop="11215"/>
          <exon e_start="11314" e_stop="11379"/>
          <exon e_start="15815" e_stop="15959"/>
          <exon e_start="16064" e_stop="16282"/>
          <exon e_start="18176" e_stop="18362"/>
          <exon e_start="18478" e_stop="18504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGTTTGCACTTGATCACATACCGAAAGGGCGAGCTGAAGATTTGTACAGGAAGTTTGTGGCATTTGAAAAGCAGTATGGTGATAGAGAAGGTATTGAGGACGCTATAGTTGGGAAAAGGAGGTTTCAGTATGAGGATGAAGTGAGGAAGAATCCACGTAACTATGACACGTGGTTTGATTATATTCGGCTGGAAGAGAGCGTTGGAAATAAAGAGAGGATTAGAGAGGTTTATGAGAGAGCCATTGCTAATGTTCCTCCTGCTGAAGAGAAGCGATATTGGCAGCGATACATTTACTTATGGTAAATTTGACAACCTTTATTTTAATGTGATAATTTTAGTTCTATTTTGGATACCTTACCATGCATTTATGTTCATTGGCTGACTTTGCGCTTTTTAGGATTAATTATGCATTATATGAAGAGCTTGATGCAGAAGACATGGAAAGAACCAGAGATGTCTACAGGTAGGATATCGTTGTCTTGACTGAAATATCACTATGTAACTCATTTGGTTGATGAACTGTATTATTTATGCTTTATGTCGTTGTATCCAGATTGTCTCTTCCTTAATTAGGGTGCTCTGTCTCAAGGCCTAAGAAATTTTCTTGGTGCAGCCCAAACCCTTTTGAGCTCGATGCACCCATCATCTGCGATATTCCCAACTTTAAGATTCCAAGGGGTTCTCTTTCAGTTGTTTGGTTGCTAGTTTCAAAATTTAACCTTAATTCCATCAGGCTTTGAGTAGAATTGGGGTTTCTTGGTGTGGGTTTTATTGATTCTGCAGTTTTATATGTTTTTTTTTTTGAGAAGGTAACATTTTTGTTTATTGACAAGTCAGTACATGGTTCGCACTGAAATCATATTTACAGCAAATGCAAAAAGACATAACTGACTCTAATTCTAACAAGATCCTAGGATGTCTATAATTGAGTCAGTGTCCTCTGAAGTATATTTGTTTGCACCAGAAACAAAAAGTCTTAATGCAATTTAGTTTGACCATCTGTAGATCACAATTTTTGCTCTCAAAACATCTTGAATTCCTTTCCTTCCATATTGTCCACAAGATACAAGCCGGGACAATCCTCCATCTGTCTTTGTCAGCGGCTCCTGTTCCTGCTTCCTCTCAACTATATAGCAAATGAGTTATTTTGTTAGGCATGACCCAACTAATGCCCCTAAGGCTAACAAAAATTTTCCACGTGCTGAGTTGGTCTTTGTTGGGGTTACCTTCAGTGACTGGTTTTGTGATGGGAAGTCGAATTTCCCTAATTCTTGTGTGTTTGGTTCGACCGACAACTTCTCTTAGATGAAATCATTCTCCAGTGTTTGATCATTTTCCACCTAAGGGGGGCAGGAATCACTTTTCTTTATCAGTGCCCCTACTCATGCTACTTATCTTGCTTTAACCTAACATAGAAACATTATTTTCAATCTTTAGTATCCAAAATTATCATAAGAACATTATCCTCATATCCCACCCTCCACCTTGTATATTATATTTCACTTACTTTATACCCAACTAAACACTGGAGGATATGATCCATGAGATAATTTTCAAGGTGAAGGATTGTGTCCCTACATGTCAAATTCGCCCAAATCATATGAATATGTTGATATTTGTTTTTAATTAGTTTGAAGGCTGTCACTAGCTGTGTAGTCTGGAGTCTGGACAGAGTTTCTGCATCAACTTAATGAGGCCACCAGTAGTTTCAGTTCCCAAAATGAGTACAAATTGGAAGGGATCGACTTACTTTAGAGATATTTTGCATTCTTAAACCCCTACTACTTGATAGTTGAGCTCATATCTATTGCTTAGGGTGATAATACTAAGGATCTGCATCTAGCGCAGTACCCTTAACTCAATCAAGTTCAATGCGCAGTCAATGAGTCAGAGTCGAAGTCCATTTAGTTACCTTCCTGAATGTTTAAAACTTCAGAAGTACTTAATGTTTAATCACAGTGCTGCATTCTTTTTAAAAGTACCTCGTGAAGGGAGAGGTTTGGAACTATGAGCTCATGCTTTTGGAGAAATCTACTGAAGTGCACACTTTCTGCAGCATTCACTTCATGATATTTTAAGAAGAGATGTACAACAAGCAAATGGTATCTATGAGCATTAAATAATGGGGGTTGGTGATGGTTAGAAATAACAATCTATTTGAACTTTCAGTTTTTTGGGTGAACTCATTGAGACTAAGATGGTTTGGGTGGGTAATGTTGTATGTTCTAGTATTCTCTATGATAGCAGCACTTAAATCCATAACGTGGATATTCTCTGGAAATATGTACAAACTTGGAGCAAGTATAGAGGGACCAACCATTGCTTTGGGAAATACCTGTGTTTTACCCCTTTCAAGTTGGTAATTATAAAATTGAATGAACTGGTAAATTTGCTAAACCAGATCGATATTGGGTCTGAGGAGAGATTAAGGTAGGCTGAAGAAGCATTGGAGGAGATGTGATTAGAGAGGACATGTCACTCATGCAACTTACAAAGGACATGACCGTAAATAGGAGGGTGTGGAGGTCAGGGATTAGGATAGGAGGTTAGTAGACAGTCTTGCGCGGTCTATTTTTTCTTACTAGTGTTATTGTTACTTTTCTTCTATTTTCTCTTTGTGATTTTCATTACCACTACTTGTCTCCTTTGTTTCGGTATTATATTATTATTGTTGTAACTGTTCTTTTCTCTAGTATTTTTAACATGGGTTTTTCGCTACTGTATTTCTTATTTTCAAATCTGCTTTGAATTGTTTTACTTGAGTCGAGGGTCTTCCGAAACCACCTCCCTGTCTTCACAACGCAAGGGTTTGTCAAATTATTAAAGCCAGAGCTCCACCTTATAAAAATAACTTATCAGTTTTAATTCTATTTCATTTCTTTGTCTTGCTCCACATGCATTTTCATGATCAATTTGCAAGTAATTACATTTTTCATTTGATTGGTTCTTTGAATTAGTTAATTTCTAGAGTACTTACTACTTGGTAAATGGTAATTACTTGTATTAAATGATCAAAACCATCAAATGAAGATGGTTTAAATACCTTTTTGATGCTTGTAAAGTTTCCAACTTAGCACTTCTTTTTGGGGGTGGCTATGTTTTTATTTGAATAGAACTGTTACTTGTCTTAGAAATGAAGATGTGAGGAATAATACAGTTGAGATTGTGAGACATCTTTAGATGTTGTATACAGTGCACAGGGTAGATCTATTTTTGGTTAATATGATACCATCTTTTCTTTTATGGGAGTTAATATGAGATCAATGTTTATTGCACAAAATATTCAGGGCAAAGCATTTGATTCCTAGGATTCCTTTCTTGCATTAAGCCACCAGAATTCTTCTCATGTTTCATTCTCAAAAAGTTCTCACGTCTATATATCTAGTTCCTTTCCCTGTCTTCTAGTTGATTTTATTGTCGTGTGACCTATATTACATGAATTAAGGTCATCCAGACTCATAAAGAGTTAAAAATTCCTTTTGGATTTCGTCAGGGAGTGCCTCAAGCTGATTCTTTGTAAGATGTCCTCATTTTGAAAAGATTTGGTTGTTCTAGTGATCCAGTTTAATTCTAATTGTCCTGGATGGAGGGCTAAATGTTGTGATATGGTGGTACTAGGTTTCTAATGATGACAAATGTAATCTAGGCTTACAAACTGTTCACTCCTTTTGTCTAGATTGTTCTTCCCTGATTACGAGGCTACGGGATTCTATGGCTTGTTTTTGAAAATAAATATTCCTCAATTAATTGCATGCTTTAAAGTCAACTACGATATGGTTGTTGAATTTTGTAATGGAACTGTTACGTTCAAAACTCCAACTTATAAGTTATAAAGTAGATGGGGTTTTAGAAGGTGGTTGGAAAAGTAGATATATTGTTTTGCCAATCGGTTGCGGTTTTTGGAAGAATATCTTGAAGGGATGGGATGGTTTTGCGGAAAGTATCTCAAATAAAGTTGGAAAAAGGAGGACCCCCCCCCCCCCCCACCCCTCCCTCTTGGTAAAAAAAATAAAAAGGACAATAACCGTAAGACATTTTAACACTGTATCTGGAAAACCAGGGACAAGCCAAAGACTCCCAGGAAAAAAATACCAACAGACCCCGCCGAACGCCAACCCATAATAGACACCATACTCCAGTACAGAACGACCCTAGCACTCACTAGATGCCTCCATCAAACGACCACGTTTAACACATACAACAAAAACTGATCCACGCACCACAGACCTACTACTACTCATCGTGCTGCGATCCGACGAAACAGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGATATGTTGCAGGTTAGTTGTTGTGTCGATAATTAATTATATAGTAATTACTAGTATATGTTGCCTTTTGTAAGTATTGCGGCGTTTGTGATTGGTAGTATGGAGATCAGGCCCGGCGTGGCAATTACCTATTACAGATGTTGTACGTAGCTGTGTTAATATATGGTGTTGTTGAGTGGTCTTGGATTTTTTGGTGTGTGTTGTGGCCCTCGACCCTAATTGTGGCTTGTTATGTAGGTGGTGTGGGATGGGTGGTGCTGTCCCCCCCCCCACCCCCAAAAAAAAAAAAAACCAAACCAAGCATAAAAAGAAGAGCATATGTGACATCGTGTATGCAAGACCATCTACTTATATCTGTGTAGCAAACATTGTTGACAAAGCATTTGATTATGAGGATACCCTTCTTACCTTTAGCCATCAGAATTTCTCTCTTTGCTATACATCTGAAATCTTTCTAATTTGTGATGTTACACAATTAAGGTCATTTAGTTATTTCGTATGTTGAAAGGATCCTTTTCATTTCATCAGGGAGTGTCTTAAGCTGATTCCACATCAGAAGTTTTCATTTGCAAAGATTTGGTTGTTGGCTGCCCAATTTGAGATTCGGCAGTTAAGACTCAAGGAGGCGCGACTTCTACTTGGAGAAGCAATTGGAAGGGCTCCTAAAGACAAGGTAGTCCCCTCTCCCCAGACATCTTTATGTTGGTTACTAATATTTCTGAGGGATATCCTTTGCATGTTACCTAACCTATACATGTCTTCTCTATTATAATACAGATATTTAAGAAGTACATAGAGATAGAGCTGCATTTTGGAAACATAGATCGTTGCAGAAAGCTTTATGAGAAGTACTTGGAATGGTCTCCAGAAAATTGCTATGCTTGGAGCAAATTCGCCGAGTTGGAGAGGTCCTTGTATGAAACGGATAGAGCCAGGGCTATTTTTGAGCTTGCAATTGACCAACCTGCTCTGGATATGCCGGAGCTATTATGGAAGGTATTGTGTTGTTCTACTAGCTGATATGCTTGTGTTTGGTTAAAAGTTATTTTAGAATGTAATTGTCCCCTAGCAACTCATGTTCTTGCTTAGTGCTGTTGCTGGGACTCCAGGCAGTTCTATGCTTGCATTTTTCTGTAGCTCATTGCATTAGGATGACTGTTTTCAGCATAGTTAAGCAACTTGATTTTGGTAGAACCCAGAAAAAGGACCACCTCAATAGTCACTTATTAACTGGAGGTTAGTAGGTCTCACCAGCAATGTTCGAAAGCATTATAAGGAAAGATTTAGCACCATTTTAACATTGTTTTATGTAGGTCAAGTCCATCTAGATTCCTTATGTACTAATAAGCCGGTCAAGGACATCTGTTCCTAATTACAGGAGAAGTTTTACCATTGAGATCCAATTGAATAATCCTGTATGCCTTTTTTTTATGAACTGACTGTGTTGTATGTTTTCCCGACTTAAAGAGAAATTTCTTTCGATTCCCACTGTCCATACCCATGGCTATCATTTTGAAAATACCAAACTCCATGGTCTTCATAAGTGTCATCAATATCTGCAAGGTACATGATTTGAAGATTTCCAGGAAGCTGGTAATAAAAGAATAGTTGTGAAGGACCCCAAGACCTAGTTCAAGTGACAGTTTGAGGGACTTGTGGCTTGCATCAAAGATTTGAGCCATGCGCCATGAGAACTAAGCCTGGTATTGAAGTGGAGAAGGGTAGTGGGGAAGACCCACTATCCCTAGTTTCTAAGGTTGCAGCGTGTCCGAAGGATAGGCCTCTGACAGTTTTTTCGGTCAAAAAAAAATTAAAAGAGTACTTGTGGAAGGAATGTCTGCACTAGGGAAAACAATTAACTAGTTTGAGCATAGGTTTACCCTTTTTCTCAGGATGTTGATAAAAAAGGGATAAGAACTGCACTGGGCATGAAAAGAATTCAAAGCTTTCGGGAAAATGCTCATCATGCTCTTTTATGTTATGCATTTGGAGCAGTGTTATCAAAAACGAAAAGCGCAAAAAGGCTCTAGGTCCGTGGGGCTTAAAGCGCAAATAAAGCGTGAGCTTTGATGAAAAAAGGCGCAAAGGGAGAAAAAAATACAAATATATATGTTTAGTCCAAGTCTAACAATTATAAACATGAATGACAAATATATGACCAAAAAATTGAAAAAAAAATCATGATAAAGTGAAATATCGATTGTTTAGTGTCACTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAAAACCTTATGACGACACTGAAGCGCACATAAAGCGAGGCGAAGCACTCAACACGTTTTGAGCCTCGCTTCAGGGCTTAAGCGCGCTTAAAGCGAGCCTTTGATAATACTTGATTTGGAGACTAACGGACAGTCACCTCTATACTTTAAGCAAGGAATTCAGCCTACAAAAGTTGAAAACTTGGGTCTGTGGATTCATTATTTGTCTTGCGCTCTACTTGTTCCTTGTCGTTTAATCATTGAATTCTCAGGCCGCCTTTCTGGGTATTCCTCAAAACCATTTTTGTACCTTTAGTGTGCTGCTCCCTTATATTAACAAAAGACTAGTATTCTCACCCAGATATTTTGGTGTGGTCATGGACTGTCTAGTTCAGTAATCATCATTGCTTTCAAGTCTATAAGACAACTTAGTGGGAAAAATTAAATTCGCATAGTGGTGAAGCTTCCCAGAAGCATTCATGTTCAGAGAACTATCTTGTAGAATGGGAAGAAATGGTCTCTCCTGTTATGTTGAAGGCCTTTTTTCATTTTAATTTTTCTGCTCTTGGTTAAGGGTGAGACAGATCATGTGCAATTTAGTTGAGGTATATTCAATTACATACATTCTAACAAGCTTCTGTTATGAATTTCTGATAGGCTTACATCGACTTTGAAATTTCTGAGGGTGAATTTGAAAGAACTAGAGCACTATATGAAAGACTTCTTAACCGCACAAAACACTTGAAGGTGTGGATAAGTTATGCGAAGTTTGAGGCTTCGGCTATGGATCCAGAGGCTGAGGAAGATATTGAACTGAAAAAGAACTGCCTACAACGCGCCAGAGGTGAGAAAATCATATGATTACTAGATTCTCCAATATAACATACCCAGTGACCATTAGGTTCTCCATTAATTTTGAATTCTGTGTTGATAATAATTTCTCCTTTTTTTTGATATAGATGTTTTTGAGAGGGCAGTTTCTTACT</genome_strand>
        <mrna_strand>ATAAGTTTGCACTTGATCACATACCGAAAGGGCGAGCTGAAGATTTGTACAGGAAGTTTGTGGCATTTGAAAAGCAGTATGGTGATAGAGAAGGTATTGAGGACGCTATAGTTGGAAAAAGGAGGTTTCAGTATGAGGATGAAGTGAGGAAGAATCCACGTAACTATGACACGTGGTTTGATTATATTCGGCTGGAAGAGAGCGTTGGAAATAAAGAGAGGATTAGAGAGGTTTATGAGAGAGCCATTGCTAATGTTCCTCCTGCTGAAGAGAAGCGATATTGGCAGCGATACATTTACTTATG..................................................................................................GATTAATTATGCATTATATGAAGAGCTTGATGCAGAAGACATGGAAAGAACCAGAGATGTCTACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTGTCTTAAGCTGATTCCACATCAGAAGTTTTCATTTGCAAAGATTTGGTTGTTGGCTGCCCAATTTGAGATTCGGCAGTTAAGACTCAAGGAGGCGCGACTTCTACTTGGAGAAGCAATTGGAAGGGCTCCTAAAGACAAG........................................................................................................ATATTTAAGAAGTACATAGAGATAGAGCTGCATTTTGGAAACATAGATCGTTGCAGAAAGCTTTATGAGAAGTACTTGGAATGGTCTCCAGAAAATTGCTATGCTTGGAGCAAATTCGCCGAGTTGGAGAGGTCCTTGTATGAAACGGATAGAGCCAGGGCTATTTTTGAGCTTGCAATTGACCAACCTGCTCTGGATATGCCGGAGCTATTATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACATCGACTTTGAAATTTCTGAGGGTGAATTTGAAAGAACTAGAGCACTATATGAAAGACTTCTTAACCGCACAAAACACTTGAAGGTGTGGATAAGTTATGCGAAGTTTGAGGCTTCGGCTATGGATCCAGAGGCTGAGGAAGATATTGAACTGAAAAAGAACTGCCTACAACGCGCCAGAG...................................................................................................................ATGTTTTTGAGAGGGCAGTTTCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329277" ref_strand="+" ref_description="SGN-U329277        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | crooked neck protein, putative / cell cycle protein, putative, similar to Swiss-Prot:P17886 crooked neck protein (Drosophila melanogaster) | chr5:16735224-16738450 FORWARD | Aliases: K16L22.5, K16L22_5(evalue: 7e-27, score=116) genbank/nr: gi|30693892|ref|NP_198992.2| cell cycle control crn (crooked neck) protein-related [Arabidopsis thaliana](evalue: 4e-25, score=116)">
      <seq>cgaactaaaggaagaaagagcaatgcttctcgaagagtggctaaatatggaaagtggttttgctgagcttggggatgtcagtttagtccgtgctaaactaccaaagaaactcaagaagagaaggcaaatagacatggaggatggtccagcagcttatgaagagtacatagactatcttttcccagaggaaacacagaccacaaatctcaaaatattggaagctgcttacaaatggaagaagcagcgagttgcatctgaggaggattagccaagctttgttagcttccatttggttttggtattcttgttttctcctttctgccttgtatcaaaagttgaaagaatgcttgtgcaattgacatcatatcttttatctcaacaagtcttatctggcattgtttttgcactcaaaaaggggcatggcacaggaggcctagtagaatgttgtgtagtgacacggaataatccaattttattttattttggcaacgatatattgtaaattatgttagtgtacttcaaccagtttgaacatagttcatctccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="18221" stop="19743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18521" g_stop="18673" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18674" i_stop="19047" i_length="374">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19048" g_stop="19443" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="549" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-U329277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18521" e_stop="18673"/>
          <exon e_start="19048" e_stop="19443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACTAAAGGAAGAAAGAGCAATGCTTCTCGAAGAGTGGCTAAATATGGAAAGTGGTTTTGCTGAGCTTGGGGATGTCAGTTTAGTCCGTGCTAAACTACCAAAGAAACTCAAGAAGAGAAGGCAAATAGACATGGAGGATGGTCCAGCAGCGTAAGTTTTCTTTTACTATGTATTTGCATATTGATCATGTTCTTTTTTATCTTTTTATTGTTTGTGCCAAAAAGAAAGTTGGGGACAAAAGATTTTGTTGGGAGGTTGGTTGAGTCCCTACGTCTTCTCATTATTGAAAAAATGAGTTCTGGTTAAATTGTTTGCTTATATGGCAGTGCTTAGTTTAAATTTAGTCTGTATTCCTTTATGTAACTTGATTAGGTGTTTCGCCACTCCCAATTTGTCTGTACACGACATCATGAATTAGCGAATTGCTACGAGGAATAACTTTCTTTTGTATCGTAAGGTTGTTCACCTGTTGCTTGGACGTTTGCTGACCCCTTTTGACATCATATACTTTCCAATTTTTGCAGTTATGAAGAGTACATAGACTATCTTTTCCCAGAGGAAACACAGACCACAAATCTCAAAATATTGGAAGCTGCTTACAAATGGAAGAAGCAGCGAGTTGCATCTGAGGAGGATTAGCCAAGCTTTGTTAGCTTCCATTTGGTTTTGGTATTCTTGTTTTCTCCTTTCTGCCTTGTATCAAAAGTTGAAAGAATGCTTGTGCAATTGACATCATATCTTTTATCTCAACAAGTCTTATCTGGCATTGTTTTTGCACTCAAAAAGGGGCATGGCACAGGAGGCCTAGTAGAATGTTGTGTAGTGACACGGAATAATCCAATTTTATTTTATTTTGGCAACGATATATTGTAAATTATGTTAGTGTACTTCAACCAGTTTGAACATAGTTCATCTCCCTT</genome_strand>
        <mrna_strand>CGAACTAAAGGAAGAAAGAGCAATGCTTCTCGAAGAGTGGCTAAATATGGAAAGTGGTTTTGCTGAGCTTGGGGATGTCAGTTTAGTCCGTGCTAAACTACCAAAGAAACTCAAGAAGAGAAGGCAAATAGACATGGAGGATGGTCCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................TTATGAAGAGTACATAGACTATCTTTTCCCAGAGGAAACACAGACCACAAATCTCAAAATATTGGAAGCTGCTTACAAATGGAAGAAGCAGCGAGTTGCATCTGAGGAGGATTAGCCAAGCTTTGTTAGCTTCCATTTGGTTTTGGTATTCTTGTTTTCTCCTTTCTGCCTTGTATCAAAAGTTGAAAGAATGCTTGTGCAATTGACATCATATCTTTTATCTCAACAAGTCTTATCTGGCATTGTTTTTGCACTCAAAAAGGGGCATGGCACAGGAGGCCTAGTAGAATGTTGTGTAGTGACACGGAATAATCCAATTTTATTTTATTTTGGCAACGATATATTGTAAATTATGTTAGTGTACTTCAACCAGTTTGAACATAGTTCATCTCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342686" ref_strand="+" ref_description="SGN-U342686        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|28973779|gb|AAO64205.1| unknown protein [Arabidopsis thaliana](evalue: 5e-13, score=77.8)">
      <seq>agtcttcaacctgtttgtgggcaagaagcacttgatctcctaaattgcaccactgaatcgccttacgataaggagaaatgccaaaagttgcttgaaactttgcgccaatgcgtaatcaacaagaaagtaaagaagttctcgctttctgatccgaggatagggaaaccagaagggagcaatgagaaaagaagttaatccttgtgaagtcataaggaatgtcttctgtgttgtgaatttgctcctgattcttcttattcggcggaataagcatttaccatcttattctaacatgtacaattgtcctaaacatctcatttctgtttcctacacttgttagttttctctttttcagctattacttcgaaatcatgaaaattttacatggattatgtgaaatctattaagacatatatgtggagtataacactaaatcaggttagtttaccatgtcttgtattcatgacttgtatgagtattttgattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="27103" stop="22855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26803" g_stop="26681" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26680" i_stop="23517" i_length="3164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23516" g_stop="23155" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="485" r_length="362" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-U342686" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26803" e_stop="26681"/>
          <exon e_start="23516" e_stop="23155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTTCAACCTGTTTGTGGGCAAGAAGCACTTGATCTCCTAAATTGCACCACTGAATCGCCTTACGATAAGGAGAAATGCCAAAAGTTGCTTGAAACTTTGCGCCAATGCGTAATCAACAAGGTAATCATCTAATTTTTTTTTCTAGTGTGTTTTTGGTAGCTGTTGAATTTTTGCTCCATTTGAGTTTTGATTTTTGCATTTTTGCACCTTTATGTGGTTGATAACTAGATAGTCTAGGTAGATGAACTATGATTAAGGGTTTAGAGAAAAAAAAAGCTTTTTTTCCTGAACCAGATTGAGTTAGAAGTACTCTAGGGACGGAGGCAGAGCCAACGGCGAATCTGGGATTTGTAGAACATGACTCTCAAAAAGAAAGGGAACTATGCATTGAGTGTGAATTGATTCGTAGTCCTCTGGGTACATAAATTAACATAATTAGCCGTTTTTGTAGCACTGGGAGTCAACGGATAATATTGTACCACTTTTTAGAAAATATATACATAAAGTACCTGGTTTACAGAGAGACTACGGTTCAGACCTCATTTTTGAGGCAATAAATTTGCCCCTGGTGTGTGTTTGTGTGTTGGTGGTGGGGGGCGGAGGGGGGCTAGAATCAAAGAATTGGAATAACAACCTTAGGACCTAAGGTGACACTATGTGAGTTTAAGCCTTTGGTAGGTAGATTTACCCAATACTTAGCATGTATACATTGACTAGACCTAGGTGCAAGCTGATTTAGGATGCGTCAAATTTTAGAAATGCGGAGGCTAGAGGATTTCTTGTTTTCTACAATCTTTAGATTAGATAAACTACACGTTAAGTGAAACAAAATTAATTTTTTGTTCTAGAGTTGCAGGCTGTATGATGTTAACTTCTTGATCATGGAATCAGGGGAAAACAGAATCTTTAAGAAGTGACTAACTAGTCTTGTTCGTTTATTATAAATGTTTAAGAAAATAAAATGAGTTTTGAGGAATAGTTTCGCGGAAGTGATAATTGAATATTCTTGTTCATTGTAAATGTTTAAGAAAACAAAATGAGTTTTGAGGAATTGTTTCGCGGAAGTGATAAATATTCTTGTTGACGTGATAGAACCATGTTGTTTCCAGAGGTGCTTATGATAGATGAGATCGTGGTAGATTCACCAATTGTTATGAGAAACTTTAATAATAACAATGGTGTCAGAGTCTGCTTACAAGCACCTCGATTATCCCACTAGGTATTTGCCACCTCCCACCTGCCCCCCAAAACTAAGGCATAACGGAAGATGTCACCTAATGTGTTCTTTTTTCGCTGAGTTATGAGTAATTTTAGAAACTACCTGAATGTTAAGTTCAAACTTCATGTCCAATGGTTAATTTCTTTATATGCTTGCTTTCCCTTCAAGATCATTGGAAGGTGAGGAAATGATTTACTCTTGATTCATGAGAAGCTAATTAACTCTCTTGTTTCACTCTTTTAGAGTAGAAAAGAAATAGAAAGCTAAAAACAATCTTGAGCTTGTTATTCTGTTGCGCTTGCAAATATCAAGCAGATTTGTAACCTTTTATTTGCTAATTTACTGATGTCATGTTGATTAGACAATGAATAGCTAGGATCTTTTCAGTGGGGGGCAGAAAAAAGAATAGGTGATGCCACTGTTAGGCCAATATTGTATTTCTGTAATTAAAGCATGTTATTTTGAAGGTAAAGCATGATAATATCAGACAGCGTTATGTTAATATCTAAGTGGACACTTAGATGAGACAATGGGCATACAAATGTTGAAAGCTAGTGCAAAAGGTTGGGTCTGGTTTCAGAAACCTTGTGCAGAATAGACTGATATAGACTTTATAAAGGTTCAATCGCAGCATGATAGAAATGTAAGAAAACAGATCACTTCACAAAATCAAAATCAATACTGTTTTGCCACCAACACCTTTTCTATTTCCTGTTCTCATGTTCTGATCTTTTTAATTTTCTTTTTTTGAGAAGTCTCATATTCTGAAATTTCATCAATAAATTTGTCAGTGTAAACTGTTCTGTACTTCTAATAGATCATGTTTGACAGATGGAGCAGTTGCTCTGTACTTAATAAGATACAAGGTTGGGAGTGCCTACGAAACATTTAACGCATTATTCCTTGTTATATATGTACTCTAACAAGTAATAATGATATCTCAGTCCTAAACAAGTTGGGGTTGGCTATATGAATCCTCACTGACCATGTTTTTAGTTTCAGCTCAAATCGTATCGTCATACCAATAAATATATATGTGCAAATTGTATAAAATATATCCATATAAATAGAAGTAATAGAAAATAAAAGGTCTCTATATATTTGTAGACGTATAAATCTGTGATAAGGTTAACATACACATATTGAAAAAATAGTTTCAAGATCAACTTATTAACAAAACTAAAACCTATTGTCAAGTAGTATATGTCACCTATTTGGATTTTTTTGTTTCACTGCGCCCAGGTCTTCCACAACAACTTCTTTTCATGTGATTTTAGGTATGCCTCGTCTCCTTTTAACAATTTCACTCGCAGTAGTTTCACACCTATAGAGCGGTGCATTTATAAGTCGATGTGTGACAACTTAACAATCTCTGACCTTCCCTCATTTTATCCTCAATCTGTGTTAGTTGCACCTTCCAGCGATTGTGGCCTTTATAAATCTTATCTGTTCTTGTTTGACCGCACGTCTATCTTAGCATCCGCATCTCTGCGACACTCCCTTGTGGATATGTTGGACTTTATCGGCTCAACATTTACCTTCATATATTGTCGGTCTTATAACTATTTTGTAAAGCTTACCCATTTCTGTAGACATCCTTCTATCATATAACACCACAAGAGCTCTTTTCCGACCAAGTTGAGTTAAGCTATATGAATGAATCCTACTGACCATGTTACTCCGTGTAAGCTTATCAAATATCCTTGCTACTACATGTAAAAGCTCATTATGGGAGTATGTTTCCTGTCAGTTGGTTCACTTTCCGAATACCACCGATTTGGCTTCTTTAGGAGGAGGCTAATTCTTGAAAGAGAAGTTTAATAATGAACATTTTACTCTTGCATGAGACTTTCTGTTATGCATCTAAGCAGAAAACATTCATAAGAAACATGTCGAAATCTTTGTTTACAAATTCGGATGAAATGTTTTATAACACTCCAACGTGTCTTAGTAGTTATTGATTCATTAATTATTTTCTTTACTGTTTGTTCATTACACTTCTTTATATATATATAGTAGTGAGTTGTAATTTGCTTATAATGGTGATTTTCATGTTCTTCTGCAGAAAGTAAAGAAGTTCTCGCTTTCTGATCCGAGGATAGGGAAACCAGAAGGGAGCAATGAGAAAAGAAGTTAATCCTTGTGAAGTCATAAGGAATGTCTTCTGTGTTGTGAATTTGCTCCTGATTCTTCTTATTCGGCGGAATAAGCATTTACCATCTTATTCTAACATGTACAATTGTCCTAAACATCTCATTTCTGTTTCCTACACTTGTTAGTTTTCTCTTTTTCAGTTATTACTTCGAAATCATGAAAATTTTACATGGTTTATGTGAAATCTATTAAGACATATATGTGGAGTATAACACTAAATCAGGTTAGTTTACCATGTCTTGTATTCATGACTTGTATGAGTATTTTGATTCG</genome_strand>
        <mrna_strand>AGTCTTCAACCTGTTTGTGGGCAAGAAGCACTTGATCTCCTAAATTGCACCACTGAATCGCCTTACGATAAGGAGAAATGCCAAAAGTTGCTTGAAACTTTGCGCCAATGCGTAATCAACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAAGAAGTTCTCGCTTTCTGATCCGAGGATAGGGAAACCAGAAGGGAGCAATGAGAAAAGAAGTTAATCCTTGTGAAGTCATAAGGAATGTCTTCTGTGTTGTGAATTTGCTCCTGATTCTTCTTATTCGGCGGAATAAGCATTTACCATCTTATTCTAACATGTACAATTGTCCTAAACATCTCATTTCTGTTTCCTACACTTGTTAGTTTTCTCTTTTTCAGCTATTACTTCGAAATCATGAAAATTTTACATGGATTATGTGAAATCTATTAAGACATATATGTGGAGTATAACACTAAATCAGGTTAGTTTACCATGTCTTGTATTCATGACTTGTATGAGTATTTTGATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312841" ref_strand="+" ref_description="SGN-U312841        Tomato 200607 #1 [59 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to ubiquitin-conjugating enzyme E2-17 kDa 9 (UBC9) [Arabidopsis thaliana] (TAIR:At4g27960.1); similar to ubiquitin-conjugating enzyme E2-17 kDa 9 (UBC9) [Arabidopsis thaliana] (TAIR:At4g27960.2); similar to ubiquitin-conjugating enzyme OsUBC5b [Oryza sativa (japonica cultivar-group)] (GB:XP_464900.1); similar to ubiquitin-conjugating enzyme E2 [Gossypium raimondii] (GB:AAL99225.1); similar to ubiquitin-conjugating enzyme 8 [Capsicum annuum] (GB:AAR83891.1); similar to ubiquitin carrier protein (GB:AAA34125.1); contains InterPro domain Ubiquitin-conjugating enzymes (InterPro:IPR000608) | chr1:23837231-23839199 FORWARD | Aliases: None(evalue: 1e-83, score=306) genbank/nr: gi|77745491|gb|ABB02644.1| ubiquitin conjugating enzyme E2-like [Solanum tuberosum] >gi|441457|emb|CAA51821.1| ubiquitin conjugating enzyme E2 [Lycopersicon esculentum] (evalue: 2e-83, score=311)">
      <seq>ttaagggatctacctgtcacatcttcaaagtactagggggttctaagtgaaaattacctctcactgatacgttacagatcaaaagcactttctcatttttctttcactgctatatatataaaggcgattggcggcgtaatcggccgaattgaccagttccagaattctgaattgcagtatcatagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgttaaaactcttatgttgggttcaaagtatgcattttaaccctttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34239" stop="28726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33939" g_stop="33737" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="289" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="417" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="522" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29029" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="941" r_length="419" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="943" polyA_stop="986"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-U312841" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>939</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33939" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGGATCTACCTGTCACATCTTCAAAGTACTAGGGGGTTCTAAGTGAAAATTACCTCTCACTGATACGTTACAGATCAAAAGCACTTTCTCATTTTTCTTTCACTGCTATATATATAAATGAAAATGGAGTCGTAAT-TG-TTTCTTCACCAGTTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTT</genome_strand>
        <mrna_strand>TTAAGGGATCTACCTGTCACATCTTCAAAGTACTAGGGGGTTCTAAGTGAAAATTACCTCTCACTGATACGTTACAGATCAAAAGCACTTTCTCATTTTTCTTTCACTGCTATATATATAAAGGCGATTGGCGGCGTAATCGGCCGAATTGACCAGTTCCAGAATTCTGAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313552" ref_strand="+" ref_description="SGN-U313552        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: VHA-E3 | vacuolar ATP synthase subunit E, putative / V-ATPase E subunit, putative / vacuolar proton pump E subunit, putative, similar to SP:Q39258 Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit) {Arabidopsis thaliana}; contains Pfam profile PF01991: ATP synthase (E/31 kDa) subunit | chr1:23832200-23833665 REVERSE | Aliases: F22C12.4, F22C12_4, VHA-E3, VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3(evalue: 2e-90, score=329) genbank/nr: gi|9652289|gb|AAF91469.1| putative vacuolar proton ATPase subunit E [Lycopersicon esculentum](evalue: 6e-102, score=374)">
      <seq>ggaaaacgaagatcggagctttcgattaaatcaattcgttttgccgttcgatccttcccgatctcaaaatgaacgacggagatgtgtccaagcagatccatcagatggtcagattcatccgccaagaagcggaggagaaggccaatgagatttctgtttccgctgaagaagaattcaacattgagaagttgcagttagtggaagcggagaagaagaagattagactggaatacgagcgtaaagagaaacaagttgacgttcgtaagaaaatagagtactccatgcaactcaatgcctctcggatcaaagttcttcaagctcaggatgacttgattagctccatggaggaaacagcagcaaaggagatcttacatgttagcaaccaccatagctataagaagcttctgcatgatcttattgttcagagtttactcagacttaaagagccttctgtcttactgcgttgccggaaagatgatgtaaacctggtggaagatgtactagatgcagtaaaggaggagtatgcagagaaggcaatggtccacacacctgagatcataattgaccacatccatcttccaccagccccatctcatcataatgcgcatggtccttcttgttctggaggagtggtactggcttctcgagatgggaaaattgtgtgtgagaacactctagatgccagattggaagttgtgttccgtaaaaagctacccgagatccgcaagtgtctatttagtggcattgctgtctgaggggctggaagttgatctatatttatcacctgtctcagattctgagataggctattcagctgataaattatataatcatctaaaggcttgcttgtatacaatttcttatctaaaagacatactctgcccagtttttctgatactaaattcccaggtcgtgttaagtaatcctttatactctagcattaagctttaatacccttttccattatcatgatctgcaataagtgtatgttggatgatctgagtttgttttgttaaggcataaataaagcgatatgagtgggcgccctctatacttanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcccgggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="37076" stop="44028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37376" g_stop="37545" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37546" i_stop="37639" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37640" g_stop="37740" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="271" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37741" i_stop="38449" i_length="709">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38450" g_stop="38603" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="425" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38604" i_stop="41601" i_length="2998">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41602" g_stop="41795" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="619" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41796" i_stop="41867" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41868" g_stop="41967" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="719" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41968" i_stop="43391" i_length="1424">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43392" g_stop="43728" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="1056" r_length="337" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1057" polyA_stop="1092"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-U313552" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1056</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37376" e_stop="37545"/>
          <exon e_start="37640" e_stop="37740"/>
          <exon e_start="38450" e_stop="38603"/>
          <exon e_start="41602" e_stop="41795"/>
          <exon e_start="41868" e_stop="41967"/>
          <exon e_start="43392" e_stop="43728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAACGAAGATCGGAGCTTTCGATTAAATCAATTCGTTTTGCCGTTCGATCCTTCCCGATCTCAAAATGAACGACGGAGATGTGTCCAAGCAGATCCATCAGATGGTCAGATTCATCCGCCAAGAAGCGGAGGAGAAGGCCAATGAGATTTCTGTTTCCGCTGAAGAAGTATGAAAATCATGTTCTAATTTTGAATTTAGAAGTGAATTTAGTTGAATTTTATCTCATGTGTTATGCATTGGCTGTGGTTTTTGTTTGTTAGGAATTCAACATTGAGAAGTTGCAGTTAGTGGAAGCGGAGAAGAAGAAGATTAGACTGGAATACGAGCGTAAAGAGAAACAAGTTGACGTTCGTAAGAAAATGTGATTTTTCTATTTTGCTCTGATTTGTGACTGTGATTAAATTTGAGATTTTTCGAAGATTTTGTTTATAAATGTTGCTCTTTATAGAAGAAGAGTTAAAGTTCAAAACTCCGCGTGAGAATTTGACATTTTGCTTCCACATATTGCTTATCAAATGATAGTAAAATGAGGTTAATAGAAGATATTCAAAAGATGTTATACTATCAACTACAATAGATAACTTTTGATTTGGCATGACGACTTTGTATTCATCCGAAACAATATAATTTTTAATTGCACTTGAAATTTTCACTTTTAGACTTAAAATCAAGTCTGAATCACACATTCTTTGTGTTCCATAGTGTCGACTAGATAAAAGAATTGCGTACACGTTAACTGATTACCACTATCATTTACTGGATATTTAGGATTCAATGTTTGCAACTCATTCTGTTTCTGCTTTCAGCAATAATATCTTTATGTTTAACATCAATTCATGTAGGACAAAGTGATTTCAAACCGAATTTGAACATATTACTGTGTGTGTTAATCTTGTTTCCTTCTTTTATTTTCAAATTAGCCACACGGTTAAATGACATTTGATTTCATAGTGATGTCCGTTTTGAAGTTGACCAAATCCTGTTAAATTACTTTTCAAAAACATTATCTAATTTCAACTTTATTGGGCCAACATAGTCTTTGACTTTCTTTTGTTATGCATTTCTTGCAGAGAGTACTCCATGCAACTCAATGCCTCTCGGATCAAAGTTCTTCAAGCTCAGGATGACTTGATTAGCTCCATGGAGGAAACAGCAGCAAAGGAGATCTTACATGTTAGCAACCACCATAGCTATAAGAAGCTTCTGCATGATCTTATTGTTCAGGTACTTTTGACTAATAATAATCCATGCGATTTTGTTCTTTGCTTCTAGATTTTCTGAGACAAATTATCAGAACTCGAAAATTAATAGGTTTATTTTACAAAAGACAAGCTATTCATCAGATTATCATCAATATCTTCAGTTGCTATGGTGTTGTACTTATATTTCTGCTCTGCTGTATACCAGATTATGAATTATTATTTAGTTTTGTTACAACAAAAGTACGGAGTAATTTCTATGTTAAGTATCCAAGGAATACAATGATTTAGATATAGGAAAAGAAAAGACTAAGTTAACTTGATATCTTAATCCATAAAAATCAGCTAGAATACTACATACAAGGAAAGATATAACTTTATTATTCTCTAATACTCCCCTCAAGCTAGAGCATAGATATTGATCATAGCTTGTTACAAAGGTAATAAACTTGAGTTCCATTTAATGCTTTTGTGAACAAAACAGCTAGTTAACATTTTACTTTTGTTGGTGCGATGTTTTTCCAGACATTTTCCCATAAACCTTGTTGTTTTTTGTTTTGGTGTGTATTAATTGTTACATAGACCCATTTAACAAATAAAAGCCCACCCTTTTTGTTCTTCCATCTCATAGAGTCTGGAGCTGAAGTAGTTTCAGTGAAGTCCCCTATTTCATGGAGTAGGTAGGGCACTCTATCCTCTTCCCAATCGTTCGAGAATCTATTAAAAGATAGATCCCATCCCAGTTCAGTCCAACACTCTTTGACAGTTGCTTCAAGGTTGTTACATATGGTGAATAGGTTTGGAAAAATATCTTTCAGAGGGATCTAGTTGTTCTAACTTTAACTGTGAATACCCACTTACATTCCATTGATTTCTTTCCCTTGGGTTAATTCACCAATCCCATGTGTGATTTTCATCTAAGGCGTGTATTTCATCAAGCATTGCATTAGACCATCTAGGATGATTCAAAGTCTCTTTCGCTATTTTGGGTACATAGACAGAGTCTAGAGAGGCAATCATAGATCCAGACGTTGAGTATAAGCCATCATAGGAAACATAATTAGCAATGGAATATGTGGATTTGCAACTATGAGTACCTTTGCGAAGAGCAATAGGGAGGTCATGATTTTCTGTAAGATCTCATGGCATGTGGATTGTTGTAGGGCATGTATCATTGGTCTCTCTCTTCCTTGAGTAAACTTGAACAACAAGTGGTCTTACTACCGCAGATGGAGTAGGAATTGATTGGACAATAGTCGATTGATCCTCGATAAAATAACTCGGAAATGGAGAGACAACATTTGATTTTTCTGTCAAAATACGGGTAACCTAATAGACTAACCACTCATCTTCCTCCTCCTAAATTGTAGAAATTGGAGGTACATAGAAAATGATGTAGACTCCGAAAATGCCACACTGATTGACACCAAATATCTGTGAAGTTTAGTAGAATTACACTGACACTCCTTTTGAAGGCGAGAATAACCTTAAAAAATGTACTTCAATGCCTTTGGATCCAACTTGGTAACAAATGGTCGAGCATCTCGAACATGACATGTGCATCCAAATACTTTAGGTTCCACCAAAAAGTGACTTGTTTGGAAAAAGAACACTATAAGGCATATTATTAGCAAGCATAATAGATGACATGCGATTAGCAAGAAAGCAAGTTGTAGAGATCGCAAGTCGAGCTGTCTCAAGTAGATGTCTATCCGTTCTCTCAACAACTCCATGTTGAGAGGGTGTAGCAACACATGAAGACTGCTGAAGAATACTATGTTGTCTCATATGACTGAAATATTCCTGACATATATTCTTTAGCATTGTCATTTCTTAGAATACGTATCGAAGCATTGAATTGAGTTTTGATTCAATACAGAAGGCACAAAAGTGAGTAAACACTTCTAAGTGACTTGGACTCTGAATAACTATTAAGTTATTTATTCTATGAATAGTTGTTCTGAAGTGTTCACTCATTTTTGTTGCCGAAATCTAAACTCAATTCAATGCTTCCGTACGTATTTTAAGAAGTGACTATGACAACACGATACTCTTCATATGTTGATACACCTTCTCAAACGGTGTTGCTGAGAGGATGGACATCTACTTAGGACAGCTGGGGCACTTCTGTTCCAAATGAAAGTTCCTAAACAATTTTGGACAAATGCGATTTCTACAACTTGTTTTCTGTTGAATTGCATGCCATCTAGTGTGGTTGTTGGTAATTTTCTTTTTCAAACATGTCACTATTTCCATATGAACCTAAGGTGTTTGGAAGCACATGTTATGTTCAACGATCTGTTCTAAAGTTTGATTAGAAGCAGTAAAGTGTGTTTTTCTAGGCTATTCTCATCTCCAAAGAGGTTATCGATGTTATTTTACTGTACATGGAAGATACTTGGTATCCAGTAGAGTGGTGTTTTCAGAGACTACACCATTCTTCTATGCACTTCCTAATCAGTGGGAAGGGGAAGAGGAATGGTTAGTCTATTAGGTTACTCGTGCTTCGACAACACATCAAATGATATTGTTCATCCATCTTCTGGTCCTTCTATTGAGCACCAATCGTGTAGTGTGCCTTCATTACCTGCTCCATCTGTGATAGCCAGGTCGCAAATTACTCAAGGAGGCAAGAGAATCATGATACATGTCCTGCACCAAATCCTTCGTCATCGGATCCAGACTGCTGGTTAGAATGTTAAGGTTATAGGAGACACGGTTGCAGTTCTAGATACCATAGGAGTAATTTGGTTGCTGTTAGAAAGAATTTGTGTTTCTTTCCTCTATCCTCTTCAATGGAATCCTGAGGTTTCCATATGTTCAATGCAATATGATCTTTCTTTTTCTTTGTAAGACCCTTGTTTCTTGTGCTATCTCCAAAACACGATATAATGATTAACAGCTAAATTATTTGCTAATTTATGTTGTCTATAGCCACAATGGGCTTTACTGTCTATGTGCCCTTTTGAACTAATTTTGCTGTTTTGTTTGGGAATAAGATGGGTACTACTCTTTGATTGTAGAGTTTACTCAGACTTAAAGAGCCTTCTGTCTTACTGCGTTGCCGGAAAGATGATGTAAACCTGGTGGAAGATGTACTAGATGCAGTAAAGGAGGAGTATGCAGAGAAGGCAATGGTCCACACACCTGAGATCATAATTGACCACATCCATCTTCCACCAGCCCCATCTCATCATAATGCGCATGGTCCTTCTTGGTAAGTGACTTCATATATGTCTGCAATGCTAAGTAGCTCCTCTTCGTAATTCATCTATCTCTATCCCGACAGTTCTGGAGGAGTGGTACTGGCTTCTCGAGATGGGAAAATTGTGTGTGAGAACACTCTAGATGCCAGATTGGAAGTTGTGTTCCGTAAAAAGCTACCCGAGGTACTTGCTTTTGTGCTTAGCTCCATACTTCTCATGATTGTGTTCTTCTCTTCCCAATTTTCTTGTTTCCTTGCACCAATATTGATACAATTGTGGTCCTTTTGCTGAGTTACACTGCCTATTTCAAGTGTCATGCATCCCTTGTCATTTTACAAATGTCATCTGGATGAATTAAGCGTCACATGTTCATTACCTATTAAAAAGATCATCTTTACAGGCCTTTTTTGGGGTGGGGGGAAATAGGCATTGTTGATACTTACAGGCTACAGCTGCTGTTTTTGCTGTCCTCCATAAAATTATTTTACATGTCAAGTCAATGGCTCTTTTGTACTTCGTACCTTGTTGCGTAAGCATCTCCAATAAGCTCCTTTGCTATTGTTTTTGTTACTGCACTTTGACATTTTGAGTTGTGGTGATGTCTGTTGCTTCTAGTCTTTGTTGAGACTAATTTATGGAAACTTCAATATCCATTTCCCTTTGGGGTAGCAAGAACATATTATGACGAGGTTAGTGATAGATGAAAGTGAAGATGGACTTAAAATAACTGGACATACCAGTCACCAGTAATATGAGTATAAAAACGAGAAAATGACCAAAATGGTCCTTAATGGGTGGGTAATGCTTTATTTAGGTCCATAATATATTTCAGTTGATTGAAATGGTCGTTAATCTATAAGAAAGGTGTTCATTTTGGTCCTTAATATATTTCAGTTGATTGAAATGGTCCTTAATGTATAACAAAATGTGGTCATTTTGGTCCTTTACGTTAAATCTAACAGATTTATTAAAAAAAAGTGCTAAATTTAACTATGAACCCTTCGTGGCCAACAATATTTACTATTGTTGTCTTCTTTGTTAGCTCCAAAGAAAGAACTCCACAAAATCAAATACCATTCTCTCTTTTCCCCAACAAAATTTTCCATTTTCTCTTTCCTAAAATATTACTCCACTGGTCTAATACTGATTTCTATTTTAAGCTAGAGAAAATAGTAAATTTTGTTAGAGAAAGTAGAGAGAATGTTTTTAGATTTCATGGTGAAATTTTTTGGAGCTAACTAAGCAAACAACAATGGTAGATCTTGTCAGCCACGTGGGATCCACAGTTAAGTTTAACACTTGTATTTCTATAAATATGTTAGGTTTGGGATAAATGATCAGAATGAACACAGTTATTGTATGTTAAGGACCTATTTCAATCAAGTGAAATACATTAAGTTCCAAAATAAAGCAGGACCATTTGGTTATTTTCACTCCAGAAACAGTCATTGTAGAATTGTAGTAGAGGTTGCTGTTGCTTCCTCTGTCATTGTGATTGAGTCCATCAAACAAGTCCTGCTGCTTCCATCAATTTTGCAGATTTCATAATTGCTTTTCGATGGTTCCCAAGAACTCTCTTTGCTTAGTTTCTCTCCTAAATATTGCAGATCCGCAAGTGTCTATTTAGTGGCATTGCTGTCTGAGGGGCTGGAAGTTGATCTATATTTATCACCTGTCTCAGATTCTGAGATAGGCTATTCAGCTGATAAATTATATAATCATCTAAAGGCTTGCTTGTATACAATTTCTTATCTAAAAGACATACTCTGCCCAGTTTTTCTGATACTAAATTCCCAGGTCGTGTTAAGTAATCCTTTATACTCTAGCATTAAGCTTTAATACCCTTTTCCATTATCATGATCTGCAATAAGTGTATGTTGGATGATCTGAGTTTGTTTTGTTAAGGCATAAATAAAACGATATGAGTGGGCGCCCTCTATACTT</genome_strand>
        <mrna_strand>GGAAAACGAAGATCGGAGCTTTCGATTAAATCAATTCGTTTTGCCGTTCGATCCTTCCCGATCTCAAAATGAACGACGGAGATGTGTCCAAGCAGATCCATCAGATGGTCAGATTCATCCGCCAAGAAGCGGAGGAGAAGGCCAATGAGATTTCTGTTTCCGCTGAAGAA..............................................................................................GAATTCAACATTGAGAAGTTGCAGTTAGTGGAAGCGGAGAAGAAGAAGATTAGACTGGAATACGAGCGTAAAGAGAAACAAGTTGACGTTCGTAAGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTACTCCATGCAACTCAATGCCTCTCGGATCAAAGTTCTTCAAGCTCAGGATGACTTGATTAGCTCCATGGAGGAAACAGCAGCAAAGGAGATCTTACATGTTAGCAACCACCATAGCTATAAGAAGCTTCTGCATGATCTTATTGTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTACTCAGACTTAAAGAGCCTTCTGTCTTACTGCGTTGCCGGAAAGATGATGTAAACCTGGTGGAAGATGTACTAGATGCAGTAAAGGAGGAGTATGCAGAGAAGGCAATGGTCCACACACCTGAGATCATAATTGACCACATCCATCTTCCACCAGCCCCATCTCATCATAATGCGCATGGTCCTTCTTG........................................................................TTCTGGAGGAGTGGTACTGGCTTCTCGAGATGGGAAAATTGTGTGTGAGAACACTCTAGATGCCAGATTGGAAGTTGTGTTCCGTAAAAAGCTACCCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCAAGTGTCTATTTAGTGGCATTGCTGTCTGAGGGGCTGGAAGTTGATCTATATTTATCACCTGTCTCAGATTCTGAGATAGGCTATTCAGCTGATAAATTATATAATCATCTAAAGGCTTGCTTGTATACAATTTCTTATCTAAAAGACATACTCTGCCCAGTTTTTCTGATACTAAATTCCCAGGTCGTGTTAAGTAATCCTTTATACTCTAGCATTAAGCTTTAATACCCTTTTCCATTATCATGATCTGCAATAAGTGTATGTTGGATGATCTGAGTTTGTTTTGTTAAGGCATAAATAAAGCGATATGAGTGGGCGCCCTCTATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341013" ref_strand="+" ref_description="SGN-U341013        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>taagaagttgatagacaaatcatagtataatcttatcttacaatgagaagtatatataggagaagtcttatattcctcatcaaccaaatcctaaaagttcaaatctttccaataagcttaaaaatcaataaaaataactaaatatattgaaggataacttttaaaatatggtaaagaataaaggagcaactttggagtttccccaaaatagtttgacacataacttcatcatgtcaagatcgaaacttcattaggatcaagagcaaatacgagaggatttgccatcaataaaggtattaatgtctcacaataggaatccatatatattagtgactatgaattggttccacaccaactatgtatgcaccagacattacccttccctctcatgaaaatcttatggtaaacagcagtgaagtataaagggcgcccactcatatcgttttatttatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="44443" stop="43389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44143" g_stop="43689" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-U341013" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44143" e_stop="43689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAAGTTGATAGACAAATCATAGTATAATCTTATCTTACAATGAGAAATATATATAGGAGAAGTCTTATATTCCTCATCAACCAAATCCTAAAAGTTCAAATCTTTCCAATAAGCTTAAAAATCAATAAAAATAACTAAATATATTGAAGGATAACTTTTAAAATATGGTAAAGAATAAAGGAGCAACTTTGGAGTTTCCCCAAAATAGTTTGACACATAACTTCATCATGTCAAGATCGAAACTTCATTAGGATCAAGAGCAAATACGAGAGGATTTGCCATCAATAAAGGTATTAATGTCTCACAATAGGAATCCATATATATTAGTGACTATGAATTGGTTCCACACCAACTATGTATGCACCAGACATTACCCTTCCCTCTCATGAAAATCTTATGGTAAACAGCAGTGAAGTATAGAGGGCGCCCACTCATATCGTTTTATTTATGCC</genome_strand>
        <mrna_strand>TAAGAAGTTGATAGACAAATCATAGTATAATCTTATCTTACAATGAGAAGTATATATAGGAGAAGTCTTATATTCCTCATCAACCAAATCCTAAAAGTTCAAATCTTTCCAATAAGCTTAAAAATCAATAAAAATAACTAAATATATTGAAGGATAACTTTTAAAATATGGTAAAGAATAAAGGAGCAACTTTGGAGTTTCCCCAAAATAGTTTGACACATAACTTCATCATGTCAAGATCGAAACTTCATTAGGATCAAGAGCAAATACGAGAGGATTTGCCATCAATAAAGGTATTAATGTCTCACAATAGGAATCCATATATATTAGTGACTATGAATTGGTTCCACACCAACTATGTATGCACCAGACATTACCCTTCCCTCTCATGAAAATCTTATGGTAAACAGCAGTGAAGTATAAAGGGCGCCCACTCATATCGTTTTATTTATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318328" ref_strand="+" ref_description="SGN-U318328        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | 6-phosphogluconate dehydrogenase family protein, contains Pfam profiles: PF00393 6-phosphogluconate dehydrogenase C-terminal domain, PF03446 NAD binding domain of 6-phosphogluconate | chr5:16682612-16684399 REVERSE | Aliases: MBK23.20, MBK23_20(evalue: 0, score=630) genbank/nr: phosphogluconate(evalue: 5e-179, score=630)">
      <seq>gtcgtctaaggggcttttgtatttgggtatgggtgtttctggtggagaagaaggggcgaggaatggaccttcgcttatgcctggtgggtcttatggggcttatacgaatatcaaagatattcttgagaaggttgcagctcaagttgaggatgggccttgtgttacttatattggtgaaggtgggtcggggaattttgtgaaaatggtgcataatggaattgaatatggtgatatgcagttgatttcggaagcttatgatgtgttgaagaatgcgggtgggttgagtaattctgaattggctgatattttcgccgaatggaaccgtggggaattggagagctttttgattgaaattacagcggatatattcaatgtgaaggatgaattgactggaaatggggagttagtggacaagattttggataagacaggaatgaaggggacggggaaatggactgtgcagcaggcggcggagctgtctattgcagctccgacaattgctgcttcgttagacagtaggtacatgagtggattgaaggatgagagggtagaagcctcagagatttttaggaaggaaggtttaaaggaggaaataagttctgatattaatggtattagcagtgttgataagaagagattgattgatgatgtgaggcaggcattgtatgcgtcgaaaatctgtagttatgctcaggggatgaatttgctaagggcaaagagctctgagaaaggttggaatttgaatttgggagagatggctaggatttggaaaggtggttgtattatcagggcagtgtttttggatcgtattaagaaggcgtatcagaggaatcctaatttggctaacttgatggttgacacggagttcgcaagggagatggtgcagaggcaagctgcttggaggagagtggtgggacttgctgttcagaagggaattagtgttcctggaatgtctgctagtcttcagtatttcgacacctacaggcgttctaggcttcccgcgaaccttgtgcaggctcagagggactatttcggggcacatacttatgagagagttgacaagccaggagcataccataccgagtgggcaaaacttgctaggaaagctcgagtgtaatgctgctgcagctattgcggattatgatcaaaatctctggtattagtcgcgctttagtacttttttcgtttagttttgcagttaataatgttgtatgcctttgaacattatagggccttcgctatcgaaatgacttcttccattgaagtaaaagaagttgcttttcctacattacattttgatgcatacaaattacctgcacttttatttatatatatggattattatagctcctcactctccaaacgaatattttgtataatttgaagatatcatgttatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47699" stop="49698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47999" g_stop="49398" g_length="1400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1400" r_length="1400" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-U318328" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47999" e_stop="49398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTCTAAGGGGCTTTTGTATTTGGGTATGGGTGTTTCTGGTGGAGAAGAAGGGGCGAGGAATGGACCTTCGCTTATGCCTGGTGGGTCTTATGGGGCTTATACGAATATCAAAGATATTCTTGAGAAGGTTGCAGCTCAAGTTGAGGATGGGCCTTGTGTTACTTATATTGGTGAAGGTGGGTCGGGGAATTTTGTGAAAATGGTGCATAATGGAATTGAATATGGTGATATGCAGTTGATTTCGGAAGCTTATGATGTGTTGAAGAATGCGGGTGGGTTGAGTAATTCTGAATTGGCTGATATTTTCGCCGAATGGAACCGTGGGGAATTGGAGAGCTTTTTGATTGAAATTACAGCGGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTTCGTTAGACAGTAGGTACATGAGTGGATTGAAGGATGAGAGGGTAGAAGCCTCAGAGATTTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAAGAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAGCTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTGGAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCCATTGAAGTAAAAGAAGTTGCTTTTCCTACATTACATTTTGATGCATACAAATTACCTGCACTTTTATTTATATATATGGATTATTACAGCTCCTCACTCTCCAAACGAATATTTTGTATAATTTGAAGATATCATGTTATAG</genome_strand>
        <mrna_strand>GTCGTCTAAGGGGCTTTTGTATTTGGGTATGGGTGTTTCTGGTGGAGAAGAAGGGGCGAGGAATGGACCTTCGCTTATGCCTGGTGGGTCTTATGGGGCTTATACGAATATCAAAGATATTCTTGAGAAGGTTGCAGCTCAAGTTGAGGATGGGCCTTGTGTTACTTATATTGGTGAAGGTGGGTCGGGGAATTTTGTGAAAATGGTGCATAATGGAATTGAATATGGTGATATGCAGTTGATTTCGGAAGCTTATGATGTGTTGAAGAATGCGGGTGGGTTGAGTAATTCTGAATTGGCTGATATTTTCGCCGAATGGAACCGTGGGGAATTGGAGAGCTTTTTGATTGAAATTACAGCGGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTTCGTTAGACAGTAGGTACATGAGTGGATTGAAGGATGAGAGGGTAGAAGCCTCAGAGATTTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAAGAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAGCTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTGGAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCCATTGAAGTAAAAGAAGTTGCTTTTCCTACATTACATTTTGATGCATACAAATTACCTGCACTTTTATTTATATATATGGATTATTATAGCTCCTCACTCTCCAAACGAATATTTTGTATAATTTGAAGATATCATGTTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326427" ref_strand="+" ref_description="SGN-U326427        Tomato 200607 #1 [4 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-27, score=122)">
      <seq>gcacgagggccatgggaagcacaaatttggaacccaacaagttagaaatgtatgaatttggcccttttgaagaagatgagggtttccaaattgggtttttgataggccaaaaattctccaaattaatacaaaacaggttatctactgaccttattcttcaaaatcaattactcccttttgctcaactcccaaattctcaaacacttatacatactttatctcaaacaaacaagaacaagttcccaaattattggaatgaactcaaaggaattgctcaaggaagtggtgtcccctttctcaatattttattattgaattttaggaaagaaatattgcctttcattccaaagacagaggaatgtcccaaggaggaagacattaatgatgactgttctgatattcttgttgttagtaattccatggctatggcagttcataatgaggatgcaaatgttgctcttgtcggacacacttatttggttaaggtgacattatctaatggaacaacattcactgcttatacatatgctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="68582" stop="70713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68877" g_stop="69178" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69179" i_stop="69851" i_length="673">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69852" g_stop="70021" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="472" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70022" i_stop="70351" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70352" g_stop="70413" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="534" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-U326427" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68877" e_stop="69178"/>
          <exon e_start="69852" e_stop="70021"/>
          <exon e_start="70352" e_stop="70413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAATGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAATGTGAACTTCCTAACTTACCCTTCTTCCTTTTTTTTCGTATTTTATATTCTGACTAATTTAAATTTGTATCGTGTAGGATTTATTAATAGATTTAGGGGCCTAAAGTTTGTCTAAACAAAGATTTTGAGCTTATGGGCTCTGTATTCTAAAAAGTAATGTTGTTTGATTTGACATAAAAATTAAGAAACAGAAGTGTTGTCTAAAACAAGTCACAAGTGTTTGTGTGAATATAAATCATCACTTTAAAGTTAAATTGTTATCAAATAGCAAAACATGTCATTTTTTTCGACTAATTTGAAAGAAATGTGTGTCATATAATTTAGGACAGAAAGAATACTAAGTTTGATTTTTGAGCCAAAGCTAATATGTTATGTTGAACCTGAACAAATGTTGTAGCTCCACTCTAGACTATATATATGAAGTTGTATTATGGCAAATGTTGAGTCCCCTTGACTTTCTTTTGTGCTTTTGCGTATTGAAAATTTTGATTTTGCTACTTATAAGATTCGTTACATTAAACGAGAAGCACCTTGTACGAGTTTTTTGTACTTCTAAAACTTTTAATTAAGGGAGGAGGGATATTATCGACCCCACGAAAGGACTTTATTGTCCATACTTCTTCTATTAAGTAGATAAATTAACAAACTGACATTGTTTTCTTTTGGTTCTTCAGATTTTATTATTGAATTTTAGGAAAGAAATATTGCCTTTCATTCCAAAGACAGAGGAATGTCCCAAGGAGGAAGACATTAATGATGACTGTTCTGATATTCTTGTTGTTAGTAATTCCATGGCTATGGCAGTTCATAATGAGGATGCAAATGTTGCTCTTGTCGGACACACGTAAATTATCTTCTTCTTTTTTTTCCGACATAATAACTAAACAGTCATTCAAACTTGGCTTCAGCTAGCAAGTATACACATTCTAGACACCTCAACTCGTCTTCACTGTGTTAGTTGAACCTCCAACTTCTATACATCTTCATGTGTCACTTTAGCATCGCGCATCCACGAGACATAGTGGGAATGGTTTGGTTGTCAGTTGAAACCAAGTTGAGTAGTGCATTTCAAAGTTGAAGTGCTTACTTGCCAGCTGAAGCCAAGTTTGAGCGCTTGTTTTATATCTGGTGCTTTTGGAAAATATGACCCTTTTCTGTTTACATTATACTGCAGTTATTTGGTTAAGGTGACATTATCTAATGGAACAACATTCACTGCTTATACATATGCTGGAG</genome_strand>
        <mrna_strand>GCACGAGGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATTATTGAATTTTAGGAAAGAAATATTGCCTTTCATTCCAAAGACAGAGGAATGTCCCAAGGAGGAAGACATTAATGATGACTGTTCTGATATTCTTGTTGTTAGTAATTCCATGGCTATGGCAGTTCATAATGAGGATGCAAATGTTGCTCTTGTCGGACACAC..........................................................................................................................................................................................................................................................................................................................................TTATTTGGTTAAGGTGACATTATCTAATGGAACAACATTCACTGCTTATACATATGCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332168" ref_strand="+" ref_description="SGN-U332168        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | cation/hydrogen exchanger, putative (CHX18), monovalent cation:proton antiporter family 2 (CPA2) member, PMID:11500563 | chr5:16655598-16658956 REVERSE | Aliases: MBK23.12, MBK23_12(evalue: 2e-16, score=81.3) genbank/nr: Na+/H+(evalue: 3e-18, score=93.6)">
      <seq>gacagttccatcaaatacgaagagaagactattagaaatgtgtcggaaacaattactatcctacgtgattacagtcgttgcagtttgtttctggttggtcgaaggcctaatggcgttgtacctcttgcattgagccagaggactgattgtcctgaactcgggccagtcgggagtttgttgacttcacaggaatacgccacaacagcatcagttctggtggtgcaacagtattatgataagttatatgcaactaatccacatcagagggatgtagcttcagttccagagaactaattaggggctctttcattgatctttgaatcataatgactgtttttcattcttgacagtttgatataactatctttttgagctgtaatcatcactttttaaatacaaggattctggttgcttttttaaaaaaannnannaannaanaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="83177" stop="84194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83477" g_stop="83895" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="436" polyA_stop="448"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-U332168" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83477" e_stop="83895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTTCCATCAAATACGAAGAGAAGACTATTAGAAATGTGTCGGAAACAATTACTATCCTACGTGATTACAGTCGTTGCAGTTTGTTTCTGGTTGGTCGAAGGCCTAATGGCGTTGTACCTCTTGCATTGAGCCAGAGGACTGATTGTCCTGAACTCGGGCCAGTCGGGAGTTTGTTGACTTCACAGGAATACGCCACAACAGCATCAGTTCTGGTGGTGCAACAGTATTATGATAAGTTATATGCAACTAATCCACATCAGAGGGATGTAGCTTCAGTTCCAGAGAACTAATTAGGGGCTCTTTCATTGATCTTTGAATCATAATGACTGTTTTTCATTCTTGACAGTTTGATATAACTATCTTTTTGAGCTGTAATCATCACTTTTTAAATACAAGGATTCTGGTTGCTTTTTTT</genome_strand>
        <mrna_strand>GACAGTTCCATCAAATACGAAGAGAAGACTATTAGAAATGTGTCGGAAACAATTACTATCCTACGTGATTACAGTCGTTGCAGTTTGTTTCTGGTTGGTCGAAGGCCTAATGGCGTTGTACCTCTTGCATTGAGCCAGAGGACTGATTGTCCTGAACTCGGGCCAGTCGGGAGTTTGTTGACTTCACAGGAATACGCCACAACAGCATCAGTTCTGGTGGTGCAACAGTATTATGATAAGTTATATGCAACTAATCCACATCAGAGGGATGTAGCTTCAGTTCCAGAGAACTAATTAGGGGCTCTTTCATTGATCTTTGAATCATAATGACTGTTTTTCATTCTTGACAGTTTGATATAACTATCTTTTTGAGCTGTAATCATCACTTTTTAAATACAAGGATTCTGGTTGCTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346534" ref_strand="+" ref_description="SGN-U346534        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|3402817|emb|CAA07704.1| lacZ' [Cloning vector pGreen](evalue: 1e-23, score=113)">
      <seq>ggaccggtaccttgttcagctgaatcaataagatcaactcctgtcaaatcttctaaggaatctgacggtttcagtaacagctttgtaaataaaccatgtacgacgtccccatatacaagggtgatggataaggtttatagtagtagcgaccagaagccgaggaaggtagccaatggagcggagccaaggagatgacagaatgttgaagagcgaactgattatgcagtgaatcagacaagaactgttactgttgcatttgtctattccttctaactgctgttcgacatgcaaaatatggtagaatctgtatagcctgtcacatggaagaaatgaatgttgtaatcttatgctgggctgggtgacttgggatcattgtgcttgtaccattacatgttacatggatgccagacacatcgatacgctttcagcattgcctcagtgtacatcattgatgaggcaatatggtagaaaagttctctatgtagtctctggtattccggaggtattcgttacgtgtgtgtaaatgtattcattatgtgatatctatggtcaggacattttcatactcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="86856" stop="85687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86556" g_stop="85979" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-U346534" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86556" e_stop="85979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCGGTACCTTGTTCAGCTGAATCAATAAGATCAACTCCTGTCAAATCTTCTAAGGAATCTGACGGTTTCAGTAACAGCTTTGTAAATAAACCATGTACGACGTCCCCATATACAAGGGTGATGGATAAGGTTTATAGTAGTAGCGACCAGAAGCCGAGGAAGGTAGCCAATGGAGCGGAGCCAAGGAGATGACAGAATGTTGAAGAGCGAACTGATTATGCAGTGAATCAGACAAGAACTGTTACTGTTGCATTTGTCTATTCCTTCTAACTGCTGTTCGACATGCAAAATATGGTAGAATCTGTATAGCCTGTCACATGGAAGAAATGAATGTTGTAATCTTATGCTGGGCTGGGTGACTTGGGATCATTGTGCTTGTACCATTACATGTTACATGGATGCCAGACACATCGATACGCTTTCAGCATTGCCTCAGTGTACATCATTGATGAGGCAATATGGTAGAAAAGTTCTCTATGTAGTCTCTGGTATTCCGGAGGTATTCGTTACGTGTGTGTAAATGTATTCATTATGTGATATCTATGGTCAGGACATTTTCATACTCAATTCTGTTG</genome_strand>
        <mrna_strand>GGACCGGTACCTTGTTCAGCTGAATCAATAAGATCAACTCCTGTCAAATCTTCTAAGGAATCTGACGGTTTCAGTAACAGCTTTGTAAATAAACCATGTACGACGTCCCCATATACAAGGGTGATGGATAAGGTTTATAGTAGTAGCGACCAGAAGCCGAGGAAGGTAGCCAATGGAGCGGAGCCAAGGAGATGACAGAATGTTGAAGAGCGAACTGATTATGCAGTGAATCAGACAAGAACTGTTACTGTTGCATTTGTCTATTCCTTCTAACTGCTGTTCGACATGCAAAATATGGTAGAATCTGTATAGCCTGTCACATGGAAGAAATGAATGTTGTAATCTTATGCTGGGCTGGGTGACTTGGGATCATTGTGCTTGTACCATTACATGTTACATGGATGCCAGACACATCGATACGCTTTCAGCATTGCCTCAGTGTACATCATTGATGAGGCAATATGGTAGAAAAGTTCTCTATGTAGTCTCTGGTATTCCGGAGGTATTCGTTACGTGTGTGTAAATGTATTCATTATGTGATATCTATGGTCAGGACATTTTCATACTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="10912" PGL_stop="18504"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10912" e_stop="11215"/>
            <exon e_start="11314" e_stop="11379"/>
            <exon e_start="15815" e_stop="15959"/>
            <exon e_start="16064" e_stop="16282"/>
            <exon e_start="18176" e_stop="18362"/>
            <exon e_start="18478" e_stop="18504"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.982" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="10912" e_stop="11215" e_length="304"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.982">
            <gDNA_intron_boundary i_start="11216" i_stop="11313" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11314" e_stop="11379" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.886">
            <gDNA_intron_boundary i_start="11380" i_stop="15814" i_length="4435"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15815" e_stop="15959" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.993">
            <gDNA_intron_boundary i_start="15960" i_stop="16063" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16064" e_stop="16282" e_length="219"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.987">
            <gDNA_intron_boundary i_start="16283" i_stop="18175" i_length="1893"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18176" e_stop="18362" e_length="187"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18363" i_stop="18477" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18478" e_stop="18504" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10912" stop="11215"/>
              <exon start="11314" stop="11379"/>
              <exon start="15815" stop="15959"/>
              <exon start="16064" stop="16282"/>
              <exon start="18176" stop="18362"/>
              <exon start="18478" stop="18504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAAGTTTGCACTTGATCACATACCGAAAGGGCGAGCTGAAGATTTGTACAGGAAGTTTGTGGCATTTGAAAAGCAGTATGGTGATAGAGAAGGTATTGAGGACGCTATAGTTGGGAAAAGGAGGTTTCAGTATGAGGATGAAGTGAGGAAGAATCCACGTAACTATGACACGTGGTTTGATTATATTCGGCTGGAAGAGAGCGTTGGAAATAAAGAGAGGATTAGAGAGGTTTATGAGAGAGCCATTGCTAATGTTCCTCCTGCTGAAGAGAAGCGATATTGGCAGCGATACATTTACTTATG : GATTAATTATGCATTATATGAAGAGCTTGATGCAGAAGACATGGAAAGAACCAGAGATGTCTACAG : GGAGTGTCTTAAGCTGATTCCACATCAGAAGTTTTCATTTGCAAAGATTTGGTTGTTGGCTGCCCAATTTGAGATTCGGCAGTTAAGACTCAAGGAGGCGCGACTTCTACTTGGAGAAGCAATTGGAAGGGCTCCTAAAGACAAG : ATATTTAAGAAGTACATAGAGATAGAGCTGCATTTTGGAAACATAGATCGTTGCAGAAAGCTTTATGAGAAGTACTTGGAATGGTCTCCAGAAAATTGCTATGCTTGGAGCAAATTCGCCGAGTTGGAGAGGTCCTTGTATGAAACGGATAGAGCCAGGGCTATTTTTGAGCTTGCAATTGACCAACCTGCTCTGGATATGCCGGAGCTATTATGGAAG : GCTTACATCGACTTTGAAATTTCTGAGGGTGAATTTGAAAGAACTAGAGCACTATATGAAAGACTTCTTAACCGCACAAAACACTTGAAGGTGTGGATAAGTTATGCGAAGTTTGAGGCTTCGGCTATGGATCCAGAGGCTGAGGAAGATATTGAACTGAAAAAGAACTGCCTACAACGCGCCAGAG : ATGTTTTTGAGAGGGCAGTTTCTTACT</gDNA_template>
            <first_frame> I  S  L  H  L  I  T  Y  R  K  G  E  L  K  I  C  T  G  S  L  W  H  L  K  S  S  M  V  I  E  K  V  L  R  T  L  *  L  G  K  G  G  F  S  M  R  M  K  *  G  R  I  H  V  T  M  T  R  G  L  I  I  F  G  W  K  R  A  L  E  I  K  R  G  L  E  R  F  M  R  E  P  L  L  M  F  L  L  L  K  R  S  D  I  G  S  D  T  F  T  Y   : G  L  I  M  H  Y  M  K  S  L  M  Q  K  T  W  K  E  P  E  M  S  T   : G  S  V  L  S  *  F  H  I  R  S  F  H  L  Q  R  F  G  C  W  L  P  N  L  R  F  G  S  *  D  S  R  R  R  D  F  Y  L  E  K  Q  L  E  G  L  L  K  T  R :   Y  L  R  S  T  *  R  *  S  C  I  L  E  T  *  I  V  A  E  S  F  M  R  S  T  W  N  G  L  Q  K  I  A  M  L  G  A  N  S  P  S  W  R  G  P  C  M  K  R  I  E  P  G  L  F  L  S  L  Q  L  T  N  L  L  W  I  C  R  S  Y  Y  G  R :   L  T  S  T  L  K  F  L  R  V  N  L  K  E  L  E  H  Y  M  K  D  F  L  T  A  Q  N  T  *  R  C  G  *  V  M  R  S  L  R  L  R  L  W  I  Q  R  L  R  K  I  L  N  *  K  R  T  A  Y  N  A  P  E  :  M  F  L  R  G  Q  F  L  T </first_frame>
            <second_frame>  *  V  C  T  *  S  H  T  E  R  A  S  *  R  F  V  Q  E  V  C  G  I  *  K  A  V  W  *  *  R  R  Y  *  G  R  Y  S  W  E  K  E  V  S  V  *  G  *  S  E  E  E  S  T  *  L  *  H  V  V  *  L  Y  S  A  G  R  E  R  W  K  *  R  E  D  *  R  G  L  *  E  S  H  C  *  C  S  S  C  *  R  E  A  I  L  A  A  I  H  L  L  M  :  D  *  L  C  I  I  *  R  A  *  C  R  R  H  G  K  N  Q  R  C  L  Q  :  G  V  S  *  A  D  S  T  S  E  V  F  I  C  K  D  L  V  V  G  C  P  I  *  D  S  A  V  K  T  Q  G  G  A  T  S  T  W  R  S  N  W  K  G  S  *  R  Q   : D  I  *  E  V  H  R  D  R  A  A  F  W  K  H  R  S  L  Q  K  A  L  *  E  V  L  G  M  V  S  R  K  L  L  C  L  E  Q  I  R  R  V  G  E  V  L  V  *  N  G  *  S  Q  G  Y  F  *  A  C  N  *  P  T  C  S  G  Y  A  G  A  I  M  E   : G  L  H  R  L  *  N  F  *  G  *  I  *  K  N  *  S  T  I  *  K  T  S  *  P  H  K  T  L  E  G  V  D  K  L  C  E  V  *  G  F  G  Y  G  S  R  G  *  G  R  Y  *  T  E  K  E  L  P  T  T  R  Q  R :   C  F  *  E  G  S  F  L   </second_frame>
            <third_frame>   K  F  A  L  D  H  I  P  K  G  R  A  E  D  L  Y  R  K  F  V  A  F  E  K  Q  Y  G  D  R  E  G  I  E  D  A  I  V  G  K  R  R  F  Q  Y  E  D  E  V  R  K  N  P  R  N  Y  D  T  W  F  D  Y  I  R  L  E  E  S  V  G  N  K  E  R  I  R  E  V  Y  E  R  A  I  A  N  V  P  P  A  E  E  K  R  Y  W  Q  R  Y  I  Y  L  W :   I  N  Y  A  L  Y  E  E  L  D  A  E  D  M  E  R  T  R  D  V  Y  R :   E  C  L  K  L  I  P  H  Q  K  F  S  F  A  K  I  W  L  L  A  A  Q  F  E  I  R  Q  L  R  L  K  E  A  R  L  L  L  G  E  A  I  G  R  A  P  K  D  K  :  I  F  K  K  Y  I  E  I  E  L  H  F  G  N  I  D  R  C  R  K  L  Y  E  K  Y  L  E  W  S  P  E  N  C  Y  A  W  S  K  F  A  E  L  E  R  S  L  Y  E  T  D  R  A  R  A  I  F  E  L  A  I  D  Q  P  A  L  D  M  P  E  L  L  W  K  :  A  Y  I  D  F  E  I  S  E  G  E  F  E  R  T  R  A  L  Y  E  R  L  L  N  R  T  K  H  L  K  V  W  I  S  Y  A  K  F  E  A  S  A  M  D  P  E  A  E  E  D  I  E  L  K  K  N  C  L  Q  R  A  R   : D  V  F  E  R  A  V  S  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10914" stop="11215"/>
                    <exon start="11314" stop="11379"/>
                    <exon start="15815" stop="15959"/>
                    <exon start="16064" stop="16282"/>
                    <exon start="18176" stop="18362"/>
                    <exon start="18478" stop="18503"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPRNYDTWFDYIRLEESVGNKERIREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAEDMERTRDVYRECLKLIPHQKFSFAKIWLLAAQFEIRQLRLKEARLLLGEAIGRAPKDKIFKKYIEIELHFGNIDRCRKLYEKYLEWSPENCYAWSKFAELERSLYETDRARAIFELAIDQPALDMPELLWKAYIDFEISEGEFERTRALYERLLNRTKHLKVWISYAKFEASAMDPEAEEDIELKKNCLQRARDVFERAVSY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="18521" PGL_stop="19443"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18521" e_stop="18673"/>
            <exon e_start="19048" e_stop="19443"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18521" e_stop="18673" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="18674" i_stop="19047" i_length="374"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19048" e_stop="19443" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18521" stop="18673"/>
              <exon start="19048" stop="19443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAACTAAAGGAAGAAAGAGCAATGCTTCTCGAAGAGTGGCTAAATATGGAAAGTGGTTTTGCTGAGCTTGGGGATGTCAGTTTAGTCCGTGCTAAACTACCAAAGAAACTCAAGAAGAGAAGGCAAATAGACATGGAGGATGGTCCAGCAGC : TTATGAAGAGTACATAGACTATCTTTTCCCAGAGGAAACACAGACCACAAATCTCAAAATATTGGAAGCTGCTTACAAATGGAAGAAGCAGCGAGTTGCATCTGAGGAGGATTAGCCAAGCTTTGTTAGCTTCCATTTGGTTTTGGTATTCTTGTTTTCTCCTTTCTGCCTTGTATCAAAAGTTGAAAGAATGCTTGTGCAATTGACATCATATCTTTTATCTCAACAAGTCTTATCTGGCATTGTTTTTGCACTCAAAAAGGGGCATGGCACAGGAGGCCTAGTAGAATGTTGTGTAGTGACACGGAATAATCCAATTTTATTTTATTTTGGCAACGATATATTGTAAATTATGTTAGTGTACTTCAACCAGTTTGAACATAGTTCATCTCCCTT</gDNA_template>
            <first_frame> R  T  K  G  R  K  S  N  A  S  R  R  V  A  K  Y  G  K  W  F  C  *  A  W  G  C  Q  F  S  P  C  *  T  T  K  E  T  Q  E  E  K  A  N  R  H  G  G  W  S  S  S  :  L  *  R  V  H  R  L  S  F  P  R  G  N  T  D  H  K  S  Q  N  I  G  S  C  L  Q  M  E  E  A  A  S  C  I  *  G  G  L  A  K  L  C  *  L  P  F  G  F  G  I  L  V  F  S  F  L  P  C  I  K  S  *  K  N  A  C  A  I  D  I  I  S  F  I  S  T  S  L  I  W  H  C  F  C  T  Q  K  G  A  W  H  R  R  P  S  R  M  L  C  S  D  T  E  *  S  N  F  I  L  F  W  Q  R  Y  I  V  N  Y  V  S  V  L  Q  P  V  *  T  *  F  I  S  L </first_frame>
            <second_frame>  E  L  K  E  E  R  A  M  L  L  E  E  W  L  N  M  E  S  G  F  A  E  L  G  D  V  S  L  V  R  A  K  L  P  K  K  L  K  K  R  R  Q  I  D  M  E  D  G  P  A  A :   Y  E  E  Y  I  D  Y  L  F  P  E  E  T  Q  T  T  N  L  K  I  L  E  A  A  Y  K  W  K  K  Q  R  V  A  S  E  E  D  *  P  S  F  V  S  F  H  L  V  L  V  F  L  F  S  P  F  C  L  V  S  K  V  E  R  M  L  V  Q  L  T  S  Y  L  L  S  Q  Q  V  L  S  G  I  V  F  A  L  K  K  G  H  G  T  G  G  L  V  E  C  C  V  V  T  R  N  N  P  I  L  F  Y  F  G  N  D  I  L  *  I  M  L  V  Y  F  N  Q  F  E  H  S  S  S  P   </second_frame>
            <third_frame>   N  *  R  K  K  E  Q  C  F  S  K  S  G  *  I  W  K  V  V  L  L  S  L  G  M  S  V  *  S  V  L  N  Y  Q  R  N  S  R  R  E  G  K  *  T  W  R  M  V  Q  Q   : L  M  K  S  T  *  T  I  F  S  Q  R  K  H  R  P  Q  I  S  K  Y  W  K  L  L  T  N  G  R  S  S  E  L  H  L  R  R  I  S  Q  A  L  L  A  S  I  W  F  W  Y  S  C  F  L  L  S  A  L  Y  Q  K  L  K  E  C  L  C  N  *  H  H  I  F  Y  L  N  K  S  Y  L  A  L  F  L  H  S  K  R  G  M  A  Q  E  A  *  *  N  V  V  *  *  H  G  I  I  Q  F  Y  F  I  L  A  T  I  Y  C  K  L  C  *  C  T  S  T  S  L  N  I  V  H  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18522" stop="18673"/>
                    <exon start="19048" stop="19162"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELKEERAMLLEEWLNMESGFAELGDVSLVRAKLPKKLKKRRQIDMEDGPAAYEEYIDYLFPEETQTTNLKILEAAYKWKKQRVASEED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19163" stop="19396"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSFVSFHLVLVFLFSPFCLVSKVERMLVQLTSYLLSQQVLSGIVFALKKGHGTGGLVECCVVTRNNPILFYFGNDIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="26803" PGL_stop="23155"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26803" e_stop="26681"/>
            <exon e_start="23516" e_stop="23155"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26803" e_stop="26681" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="26680" i_stop="23517" i_length="3164"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="23516" e_stop="23155" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26803" stop="26681"/>
              <exon start="23516" stop="23155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342686" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCTTCAACCTGTTTGTGGGCAAGAAGCACTTGATCTCCTAAATTGCACCACTGAATCGCCTTACGATAAGGAGAAATGCCAAAAGTTGCTTGAAACTTTGCGCCAATGCGTAATCAACAAG : AAAGTAAAGAAGTTCTCGCTTTCTGATCCGAGGATAGGGAAACCAGAAGGGAGCAATGAGAAAAGAAGTTAATCCTTGTGAAGTCATAAGGAATGTCTTCTGTGTTGTGAATTTGCTCCTGATTCTTCTTATTCGGCGGAATAAGCATTTACCATCTTATTCTAACATGTACAATTGTCCTAAACATCTCATTTCTGTTTCCTACACTTGTTAGTTTTCTCTTTTTCAGTTATTACTTCGAAATCATGAAAATTTTACATGGTTTATGTGAAATCTATTAAGACATATATGTGGAGTATAACACTAAATCAGGTTAGTTTACCATGTCTTGTATTCATGACTTGTATGAGTATTTTGATTCG</gDNA_template>
            <first_frame> S  L  Q  P  V  C  G  Q  E  A  L  D  L  L  N  C  T  T  E  S  P  Y  D  K  E  K  C  Q  K  L  L  E  T  L  R  Q  C  V  I  N  K  :  K  V  K  K  F  S  L  S  D  P  R  I  G  K  P  E  G  S  N  E  K  R  S  *  S  L  *  S  H  K  E  C  L  L  C  C  E  F  A  P  D  S  S  Y  S  A  E  *  A  F  T  I  L  F  *  H  V  Q  L  S  *  T  S  H  F  C  F  L  H  L  L  V  F  S  F  S  V  I  T  S  K  S  *  K  F  Y  M  V  Y  V  K  S  I  K  T  Y  M  W  S  I  T  L  N  Q  V  S  L  P  C  L  V  F  M  T  C  M  S  I  L  I   </first_frame>
            <second_frame>  V  F  N  L  F  V  G  K  K  H  L  I  S  *  I  A  P  L  N  R  L  T  I  R  R  N  A  K  S  C  L  K  L  C  A  N  A  *  S  T  R :   K  *  R  S  S  R  F  L  I  R  G  *  G  N  Q  K  G  A  M  R  K  E  V  N  P  C  E  V  I  R  N  V  F  C  V  V  N  L  L  L  I  L  L  I  R  R  N  K  H  L  P  S  Y  S  N  M  Y  N  C  P  K  H  L  I  S  V  S  Y  T  C  *  F  S  L  F  Q  L  L  L  R  N  H  E  N  F  T  W  F  M  *  N  L  L  R  H  I  C  G  V  *  H  *  I  R  L  V  Y  H  V  L  Y  S  *  L  V  *  V  F  *  F  </second_frame>
            <third_frame>   S  S  T  C  L  W  A  R  S  T  *  S  P  K  L  H  H  *  I  A  L  R  *  G  E  M  P  K  V  A  *  N  F  A  P  M  R  N  Q  Q   : E  S  K  E  V  L  A  F  *  S  E  D  R  E  T  R  R  E  Q  *  E  K  K  L  I  L  V  K  S  *  G  M  S  S  V  L  *  I  C  S  *  F  F  L  F  G  G  I  S  I  Y  H  L  I  L  T  C  T  I  V  L  N  I  S  F  L  F  P  T  L  V  S  F  L  F  F  S  Y  Y  F  E  I  M  K  I  L  H  G  L  C  E  I  Y  *  D  I  Y  V  E  Y  N  T  K  S  G  *  F  T  M  S  C  I  H  D  L  Y  E  Y  F  D  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26803" stop="26681"/>
                    <exon start="23516" stop="23445"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLQPVCGQEALDLLNCTTESPYDKEKCQKLLETLRQCVINKKVKKFSLSDPRIGKPEGSNEKRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="33939" PGL_stop="29029"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33939" e_stop="33737"/>
            <exon e_start="33618" e_stop="33535"/>
            <exon e_start="30996" e_stop="30869"/>
            <exon e_start="29680" e_stop="29576"/>
            <exon e_start="29447" e_stop="29029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.910" e_score="0.916"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.932" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="33939" e_stop="33737" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.910">
            <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33618" e_stop="33535" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30996" e_stop="30869" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.908">
            <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29680" e_stop="29576" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.932">
            <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="29447" e_stop="29029" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33939" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312841" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAGGGATCTACCTGTCACATCTTCAAAGTACTAGGGGGTTCTAAGTGAAAATTACCTCTCACTGATACGTTACAGATCAAAAGCACTTTCTCATTTTTCTTTCACTGCTATATATATAAATGAAAATGGAGTCGTAATTGTTTCTTCACCAGTTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAG : GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG : GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG : GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG : GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTT</gDNA_template>
            <first_frame> L  R  D  L  P  V  T  S  S  K  Y  *  G  V  L  S  E  N  Y  L  S  L  I  R  Y  R  S  K  A  L  S  H  F  S  F  T  A  I  Y  I  N  E  N  G  V  V  I  V  S  S  P  V  P  E  F  *  I  A  V  S  *  G  L  G  G  S  L  R :   D  L  V  C  Y  G  I  Q  A  D  S  Q  G  A  *  G  S  P  E  R  S  S  Y  L  L  Q  C  W :   P  S  S  *  R  Y  V  P  L  A  S  N  N  H  G  S  S  *  Q  S  L  F  W  W  S  V  S  C  Y  Y  S  F  S  T  *  L  S  I  Q  A  T  K   : G  S  F  Q  D  K  G  F  P  P  E  H  Q  *  Q  W  Q  H  L  P  *  H  F  E  G  T  V  E  P  C  T  Y  H  L  Q   : G  T  A  L  Y  L  F  S  A  D  R  P  *  S  R  *  P  F  G  A  G  D  C  S  Y  V  Q  N  *  *  E  Q  V  *  D  N  C  P  E  L  D  S  K  I  C  H  G  I  V  A  V  T  I  S  V  P  A  V  V  F  C  I  I  Y  R  I  V  A  V  T  I  G  V  *  F  P  A  V  V  F  S  S  L  Y  I  M  Y  Y  E  I  V  F  L  C  I  I  K  T  *  K  A  G  K  S  N  R  F  V  V  K  Q  F  D  F  L  F  A  C  K  N  V  I  S  Y  G  V  K  T  L  M  L  G  S  K  Y  A  F  *  P  F </first_frame>
            <second_frame>  *  G  I  Y  L  S  H  L  Q  S  T  R  G  F  *  V  K  I  T  S  H  *  Y  V  T  D  Q  K  H  F  L  I  F  L  S  L  L  Y  I  *  M  K  M  E  S  *  L  F  L  H  Q  F  Q  N  S  E  L  Q  Y  R  R  A  *  E  D  L  *   : G  I  W  S  A  M  A  S  K  R  I  L  K  E  L  K  D  L  Q  K  D  P  P  T  S  C  S  A   : G  P  V  A  E  D  M  F  H  W  Q  A  T  I  M  G  P  A  D  S  P  Y  S  G  G  V  F  L  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  K  V  F  H  P  N  I  N  S  N  G  S  I  C  L  D  I  L  K  E  Q  W  S  P  A  L  T  I  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  Y  K  T  D  R  S  K  Y  E  T  T  A  R  S  W  T  Q  K  F  A  M  G  *  L  L  *  P  S  L  S  L  L  W  Y  F  V  L  S  I  E  *  L  L  *  P  S  G  S  D  S  L  L  W  Y  L  V  V  Y  I  L  C  I  M  K  L  C  S  Y  A  *  S  K  L  K  R  R  E  S  R  T  G  S  S  *  N  N  L  I  F  S  L  L  A  R  M  L  S  V  M  V  L  K  L  L  C  W  V  Q  S  M  H  F  N  P   </second_frame>
            <third_frame>   K  G  S  T  C  H  I  F  K  V  L  G  G  S  K  *  K  L  P  L  T  D  T  L  Q  I  K  S  T  F  S  F  F  F  H  C  Y  I  Y  K  *  K  W  S  R  N  C  F  F  T  S  S  R  I  L  N  C  S  I  V  G  L  R  R  I  S  E  :  G  F  G  L  L  W  H  P  S  G  F  S  R  S  L  R  I  S  R  K  I  L  L  P  L  A  V  L  :  A  Q  *  L  K  I  C  S  I  G  K  Q  Q  S  W  V  Q  L  T  V  P  I  L  V  E  C  F  L  L  L  F  I  F  H  L  T  I  H  S  S  H  Q  R :   *  L  S  G  Q  R  F  S  T  R  T  S  I  A  M  A  A  F  A  L  T  F  *  R  N  S  G  A  L  H  L  P  S  P  R :   Y  C  S  L  S  V  L  C  *  Q  T  L  I  P  M  T  L  W  C  R  R  L  L  I  C  T  K  L  I  G  A  S  M  R  Q  L  P  G  A  G  L  K  N  L  P  W  D  S  C  C  D  H  L  C  P  C  C  G  I  L  Y  Y  L  S  N  S  C  C  D  H  R  G  L  I  P  C  C  G  I  *  *  F  I  Y  Y  V  L  *  N  C  V  L  M  H  N  Q  N  L  K  G  G  K  V  E  Q  V  R  R  E  T  I  *  F  S  L  C  L  Q  E  C  Y  Q  L  W  C  *  N  S  Y  V  G  F  K  V  C  I  L  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33737" stop="33535"/>
                    <exon start="30996" stop="30869"/>
                    <exon start="29680" stop="29576"/>
                    <exon start="29447" stop="29304"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIWSAMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKFAMG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="37376" PGL_stop="43728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37376" e_stop="37545"/>
            <exon e_start="37640" e_stop="37740"/>
            <exon e_start="38450" e_stop="38603"/>
            <exon e_start="41602" e_stop="41795"/>
            <exon e_start="41868" e_stop="41967"/>
            <exon e_start="43392" e_stop="43728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.851" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37376" e_stop="37545" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37546" i_stop="37639" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37640" e_stop="37740" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.995">
            <gDNA_intron_boundary i_start="37741" i_stop="38449" i_length="709"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38450" e_stop="38603" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.851">
            <gDNA_intron_boundary i_start="38604" i_stop="41601" i_length="2998"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41602" e_stop="41795" e_length="194"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41796" i_stop="41867" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41868" e_stop="41967" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.920">
            <gDNA_intron_boundary i_start="41968" i_stop="43391" i_length="1424"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="43392" e_stop="43728" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37376" stop="37545"/>
              <exon start="37640" stop="37740"/>
              <exon start="38450" stop="38603"/>
              <exon start="41602" stop="41795"/>
              <exon start="41868" stop="41967"/>
              <exon start="43392" stop="43728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313552" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAAACGAAGATCGGAGCTTTCGATTAAATCAATTCGTTTTGCCGTTCGATCCTTCCCGATCTCAAAATGAACGACGGAGATGTGTCCAAGCAGATCCATCAGATGGTCAGATTCATCCGCCAAGAAGCGGAGGAGAAGGCCAATGAGATTTCTGTTTCCGCTGAAGAA : GAATTCAACATTGAGAAGTTGCAGTTAGTGGAAGCGGAGAAGAAGAAGATTAGACTGGAATACGAGCGTAAAGAGAAACAAGTTGACGTTCGTAAGAAAAT : AGAGTACTCCATGCAACTCAATGCCTCTCGGATCAAAGTTCTTCAAGCTCAGGATGACTTGATTAGCTCCATGGAGGAAACAGCAGCAAAGGAGATCTTACATGTTAGCAACCACCATAGCTATAAGAAGCTTCTGCATGATCTTATTGTTCAG : AGTTTACTCAGACTTAAAGAGCCTTCTGTCTTACTGCGTTGCCGGAAAGATGATGTAAACCTGGTGGAAGATGTACTAGATGCAGTAAAGGAGGAGTATGCAGAGAAGGCAATGGTCCACACACCTGAGATCATAATTGACCACATCCATCTTCCACCAGCCCCATCTCATCATAATGCGCATGGTCCTTCTTG : TTCTGGAGGAGTGGTACTGGCTTCTCGAGATGGGAAAATTGTGTGTGAGAACACTCTAGATGCCAGATTGGAAGTTGTGTTCCGTAAAAAGCTACCCGAG : ATCCGCAAGTGTCTATTTAGTGGCATTGCTGTCTGAGGGGCTGGAAGTTGATCTATATTTATCACCTGTCTCAGATTCTGAGATAGGCTATTCAGCTGATAAATTATATAATCATCTAAAGGCTTGCTTGTATACAATTTCTTATCTAAAAGACATACTCTGCCCAGTTTTTCTGATACTAAATTCCCAGGTCGTGTTAAGTAATCCTTTATACTCTAGCATTAAGCTTTAATACCCTTTTCCATTATCATGATCTGCAATAAGTGTATGTTGGATGATCTGAGTTTGTTTTGTTAAGGCATAAATAAAACGATATGAGTGGGCGCCCTCTATACTT</gDNA_template>
            <first_frame> G  K  R  R  S  E  L  S  I  K  S  I  R  F  A  V  R  S  F  P  I  S  K  *  T  T  E  M  C  P  S  R  S  I  R  W  S  D  S  S  A  K  K  R  R  R  R  P  M  R  F  L  F  P  L  K  K :   N  S  T  L  R  S  C  S  *  W  K  R  R  R  R  R  L  D  W  N  T  S  V  K  R  N  K  L  T  F  V  R  K   : *  S  T  P  C  N  S  M  P  L  G  S  K  F  F  K  L  R  M  T  *  L  A  P  W  R  K  Q  Q  Q  R  R  S  Y  M  L  A  T  T  I  A  I  R  S  F  C  M  I  L  L  F  R :   V  Y  S  D  L  K  S  L  L  S  Y  C  V  A  G  K  M  M  *  T  W  W  K  M  Y  *  M  Q  *  R  R  S  M  Q  R  R  Q  W  S  T  H  L  R  S  *  L  T  T  S  I  F  H  Q  P  H  L  I  I  M  R  M  V  L  L   : V  L  E  E  W  Y  W  L  L  E  M  G  K  L  C  V  R  T  L  *  M  P  D  W  K  L  C  S  V  K  S  Y  P  R :   S  A  S  V  Y  L  V  A  L  L  S  E  G  L  E  V  D  L  Y  L  S  P  V  S  D  S  E  I  G  Y  S  A  D  K  L  Y  N  H  L  K  A  C  L  Y  T  I  S  Y  L  K  D  I  L  C  P  V  F  L  I  L  N  S  Q  V  V  L  S  N  P  L  Y  S  S  I  K  L  *  Y  P  F  P  L  S  *  S  A  I  S  V  C  W  M  I  *  V  C  F  V  K  A  *  I  K  R  Y  E  W  A  P  S  I  L </first_frame>
            <second_frame>  E  N  E  D  R  S  F  R  L  N  Q  F  V  L  P  F  D  P  S  R  S  Q  N  E  R  R  R  C  V  Q  A  D  P  S  D  G  Q  I  H  P  P  R  S  G  G  E  G  Q  *  D  F  C  F  R  *  R   : R  I  Q  H  *  E  V  A  V  S  G  S  G  E  E  E  D  *  T  G  I  R  A  *  R  E  T  S  *  R  S  *  E  N  :  R  V  L  H  A  T  Q  C  L  S  D  Q  S  S  S  S  S  G  *  L  D  *  L  H  G  G  N  S  S  K  G  D  L  T  C  *  Q  P  P  *  L  *  E  A  S  A  *  S  Y  C  S   : E  F  T  Q  T  *  R  A  F  C  L  T  A  L  P  E  R  *  C  K  P  G  G  R  C  T  R  C  S  K  G  G  V  C  R  E  G  N  G  P  H  T  *  D  H  N  *  P  H  P  S  S  T  S  P  I  S  S  *  C  A  W  S  F  L  :  F  W  R  S  G  T  G  F  S  R  W  E  N  C  V  *  E  H  S  R  C  Q  I  G  S  C  V  P  *  K  A  T  R   : D  P  Q  V  S  I  *  W  H  C  C  L  R  G  W  K  L  I  Y  I  Y  H  L  S  Q  I  L  R  *  A  I  Q  L  I  N  Y  I  I  I  *  R  L  A  C  I  Q  F  L  I  *  K  T  Y  S  A  Q  F  F  *  Y  *  I  P  R  S  C  *  V  I  L  Y  T  L  A  L  S  F  N  T  L  F  H  Y  H  D  L  Q  *  V  Y  V  G  *  S  E  F  V  L  L  R  H  K  *  N  D  M  S  G  R  P  L  Y   </second_frame>
            <third_frame>   K  T  K  I  G  A  F  D  *  I  N  S  F  C  R  S  I  L  P  D  L  K  M  N  D  G  D  V  S  K  Q  I  H  Q  M  V  R  F  I  R  Q  E  A  E  E  K  A  N  E  I  S  V  S  A  E  E  :  E  F  N  I  E  K  L  Q  L  V  E  A  E  K  K  K  I  R  L  E  Y  E  R  K  E  K  Q  V  D  V  R  K  K  I :   E  Y  S  M  Q  L  N  A  S  R  I  K  V  L  Q  A  Q  D  D  L  I  S  S  M  E  E  T  A  A  K  E  I  L  H  V  S  N  H  H  S  Y  K  K  L  L  H  D  L  I  V  Q  :  S  L  L  R  L  K  E  P  S  V  L  L  R  C  R  K  D  D  V  N  L  V  E  D  V  L  D  A  V  K  E  E  Y  A  E  K  A  M  V  H  T  P  E  I  I  I  D  H  I  H  L  P  P  A  P  S  H  H  N  A  H  G  P  S  C :   S  G  G  V  V  L  A  S  R  D  G  K  I  V  C  E  N  T  L  D  A  R  L  E  V  V  F  R  K  K  L  P  E  :  I  R  K  C  L  F  S  G  I  A  V  *  G  A  G  S  *  S  I  F  I  T  C  L  R  F  *  D  R  L  F  S  *  *  I  I  *  S  S  K  G  L  L  V  Y  N  F  L  S  K  R  H  T  L  P  S  F  S  D  T  K  F  P  G  R  V  K  *  S  F  I  L  *  H  *  A  L  I  P  F  S  I  I  M  I  C  N  K  C  M  L  D  D  L  S  L  F  C  *  G  I  N  K  T  I  *  V  G  A  L  Y  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37405" stop="37545"/>
                    <exon start="37640" stop="37740"/>
                    <exon start="38450" stop="38603"/>
                    <exon start="41602" stop="41795"/>
                    <exon start="41868" stop="41967"/>
                    <exon start="43392" stop="43427"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INSFCRSILPDLKMNDGDVSKQIHQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRLEYERKEKQVDVRKKIEYSMQLNASRIKVLQAQDDLISSMEETAAKEILHVSNHHSYKKLLHDLIVQSLLRLKEPSVLLRCRKDDVNLVEDVLDAVKEEYAEKAMVHTPEIIIDHIHLPPAPSHHNAHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRKCLFSGIAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="44143" PGL_stop="43689"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44143" e_stop="43689"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="44143" e_stop="43689" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44143" stop="43689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341013" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGAAGTTGATAGACAAATCATAGTATAATCTTATCTTACAATGAGAAATATATATAGGAGAAGTCTTATATTCCTCATCAACCAAATCCTAAAAGTTCAAATCTTTCCAATAAGCTTAAAAATCAATAAAAATAACTAAATATATTGAAGGATAACTTTTAAAATATGGTAAAGAATAAAGGAGCAACTTTGGAGTTTCCCCAAAATAGTTTGACACATAACTTCATCATGTCAAGATCGAAACTTCATTAGGATCAAGAGCAAATACGAGAGGATTTGCCATCAATAAAGGTATTAATGTCTCACAATAGGAATCCATATATATTAGTGACTATGAATTGGTTCCACACCAACTATGTATGCACCAGACATTACCCTTCCCTCTCATGAAAATCTTATGGTAAACAGCAGTGAAGTATAGAGGGCGCCCACTCATATCGTTTTATTTATGCC</gDNA_template>
            <first_frame> *  E  V  D  R  Q  I  I  V  *  S  Y  L  T  M  R  N  I  Y  R  R  S  L  I  F  L  I  N  Q  I  L  K  V  Q  I  F  P  I  S  L  K  I  N  K  N  N  *  I  Y  *  R  I  T  F  K  I  W  *  R  I  K  E  Q  L  W  S  F  P  K  I  V  *  H  I  T  S  S  C  Q  D  R  N  F  I  R  I  K  S  K  Y  E  R  I  C  H  Q  *  R  Y  *  C  L  T  I  G  I  H  I  Y  *  *  L  *  I  G  S  T  P  T  M  Y  A  P  D  I  T  L  P  S  H  E  N  L  M  V  N  S  S  E  V  *  R  A  P  T  H  I  V  L  F  M   </first_frame>
            <second_frame>  K  K  L  I  D  K  S  *  Y  N  L  I  L  Q  *  E  I  Y  I  G  E  V  L  Y  S  S  S  T  K  S  *  K  F  K  S  F  Q  *  A  *  K  S  I  K  I  T  K  Y  I  E  G  *  L  L  K  Y  G  K  E  *  R  S  N  F  G  V  S  P  K  *  F  D  T  *  L  H  H  V  K  I  E  T  S  L  G  S  R  A  N  T  R  G  F  A  I  N  K  G  I  N  V  S  Q  *  E  S  I  Y  I  S  D  Y  E  L  V  P  H  Q  L  C  M  H  Q  T  L  P  F  P  L  M  K  I  L  W  *  T  A  V  K  Y  R  G  R  P  L  I  S  F  Y  L  C  </second_frame>
            <third_frame>   R  S  *  *  T  N  H  S  I  I  L  S  Y  N  E  K  Y  I  *  E  K  S  Y  I  P  H  Q  P  N  P  K  S  S  N  L  S  N  K  L  K  N  Q  *  K  *  L  N  I  L  K  D  N  F  *  N  M  V  K  N  K  G  A  T  L  E  F  P  Q  N  S  L  T  H  N  F  I  M  S  R  S  K  L  H  *  D  Q  E  Q  I  R  E  D  L  P  S  I  K  V  L  M  S  H  N  R  N  P  Y  I  L  V  T  M  N  W  F  H  T  N  Y  V  C  T  R  H  Y  P  S  L  S  *  K  S  Y  G  K  Q  Q  *  S  I  E  G  A  H  S  Y  R  F  I  Y  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0302G23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="47999" PGL_stop="49398"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47999" e_stop="49398"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="47999" e_stop="49398" e_length="1400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47999" stop="49398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCGTCTAAGGGGCTTTTGTATTTGGGTATGGGTGTTTCTGGTGGAGAAGAAGGGGCGAGGAATGGACCTTCGCTTATGCCTGGTGGGTCTTATGGGGCTTATACGAATATCAAAGATATTCTTGAGAAGGTTGCAGCTCAAGTTGAGGATGGGCCTTGTGTTACTTATATTGGTGAAGGTGGGTCGGGGAATTTTGTGAAAATGGTGCATAATGGAATTGAATATGGTGATATGCAGTTGATTTCGGAAGCTTATGATGTGTTGAAGAATGCGGGTGGGTTGAGTAATTCTGAATTGGCTGATATTTTCGCCGAATGGAACCGTGGGGAATTGGAGAGCTTTTTGATTGAAATTACAGCGGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTTCGTTAGACAGTAGGTACATGAGTGGATTGAAGGATGAGAGGGTAGAAGCCTCAGAGATTTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAAGAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAGCTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTGGAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCCATTGAAGTAAAAGAAGTTGCTTTTCCTACATTACATTTTGATGCATACAAATTACCTGCACTTTTATTTATATATATGGATTATTACAGCTCCTCACTCTCCAAACGAATATTTTGTATAATTTGAAGATATCATGTTATAG</gDNA_template>
            <first_frame> V  V  *  G  A  F  V  F  G  Y  G  C  F  W  W  R  R  R  G  E  E  W  T  F  A  Y  A  W  W  V  L  W  G  L  Y  E  Y  Q  R  Y  S  *  E  G  C  S  S  S  *  G  W  A  L  C  Y  L  Y  W  *  R  W  V  G  E  F  C  E  N  G  A  *  W  N  *  I  W  *  Y  A  V  D  F  G  S  L  *  C  V  E  E  C  G  W  V  E  *  F  *  I  G  *  Y  F  R  R  M  E  P  W  G  I  G  E  L  F  D  *  N  Y  S  G  Y  I  Q  C  E  G  *  I  D  W  K  W  G  V  S  G  Q  D  F  G  *  D  R  N  E  G  D  G  E  M  D  C  A  A  G  G  G  A  V  Y  C  S  S  D  N  C  C  F  V  R  Q  *  V  H  E  W  I  E  G  *  E  G  R  S  L  R  D  F  *  E  G  R  F  K  G  G  N  K  F  *  Y  *  W  Y  *  Q  C  *  *  E  E  I  D  *  *  C  E  A  G  I  V  C  V  E  N  L  *  L  C  S  G  D  E  F  A  K  G  K  E  L  *  E  R  L  E  F  E  F  G  R  D  G  *  D  L  E  R  W  L  Y  Y  Q  G  S  V  F  G  S  Y  *  E  G  V  S  E  E  S  *  F  G  *  L  D  G  *  H  G  V  R  K  G  D  G  A  E  A  S  C  L  E  E  S  G  G  T  C  C  S  E  G  N  *  C  S  W  N  V  C  *  S  S  V  F  R  H  L  Q  A  F  *  A  S  R  E  P  C  A  G  S  E  G  L  F  R  G  T  Y  L  *  E  S  *  Q  A  R  S  I  P  Y  R  V  G  K  T  C  *  E  S  S  S  V  M  L  L  Q  L  L  R  I  M  I  K  I  S  G  I  S  R  A  L  V  L  F  S  F  S  F  A  V  N  N  V  V  C  L  *  T  L  *  G  L  R  Y  R  N  D  F  F  H  *  S  K  R  S  C  F  S  Y  I  T  F  *  C  I  Q  I  T  C  T  F  I  Y  I  Y  G  L  L  Q  L  L  T  L  Q  T  N  I  L  Y  N  L  K  I  S  C  Y   </first_frame>
            <second_frame>  S  S  K  G  L  L  Y  L  G  M  G  V  S  G  G  E  E  G  A  R  N  G  P  S  L  M  P  G  G  S  Y  G  A  Y  T  N  I  K  D  I  L  E  K  V  A  A  Q  V  E  D  G  P  C  V  T  Y  I  G  E  G  G  S  G  N  F  V  K  M  V  H  N  G  I  E  Y  G  D  M  Q  L  I  S  E  A  Y  D  V  L  K  N  A  G  G  L  S  N  S  E  L  A  D  I  F  A  E  W  N  R  G  E  L  E  S  F  L  I  E  I  T  A  D  I  F  N  V  K  D  E  L  T  G  N  G  E  L  V  D  K  I  L  D  K  T  G  M  K  G  T  G  K  W  T  V  Q  Q  A  A  E  L  S  I  A  A  P  T  I  A  A  S  L  D  S  R  Y  M  S  G  L  K  D  E  R  V  E  A  S  E  I  F  R  K  E  G  L  K  E  E  I  S  S  D  I  N  G  I  S  S  V  D  K  K  R  L  I  D  D  V  R  Q  A  L  Y  A  S  K  I  C  S  Y  A  Q  G  M  N  L  L  R  A  K  S  S  E  K  G  W  N  L  N  L  G  E  M  A  R  I  W  K  G  G  C  I  I  R  A  V  F  L  D  R  I  K  K  A  Y  Q  R  N  P  N  L  A  N  L  M  V  D  T  E  F  A  R  E  M  V  Q  R  Q  A  A  W  R  R  V  V  G  L  A  V  Q  K  G  I  S  V  P  G  M  S  A  S  L  Q  Y  F  D  T  Y  R  R  S  R  L  P  A  N  L  V  Q  A  Q  R  D  Y  F  G  A  H  T  Y  E  R  V  D  K  P  G  A  Y  H  T  E  W  A  K  L  A  R  K  A  R  V  *  C  C  C  S  Y  C  G  L  *  S  K  S  L  V  L  V  A  L  *  Y  F  F  R  L  V  L  Q  L  I  M  L  Y  A  F  E  H  Y  R  A  F  A  I  E  M  T  S  S  I  E  V  K  E  V  A  F  P  T  L  H  F  D  A  Y  K  L  P  A  L  L  F  I  Y  M  D  Y  Y  S  S  S  L  S  K  R  I  F  C  I  I  *  R  Y  H  V  I  </second_frame>
            <third_frame>   R  L  R  G  F  C  I  W  V  W  V  F  L  V  E  K  K  G  R  G  M  D  L  R  L  C  L  V  G  L  M  G  L  I  R  I  S  K  I  F  L  R  R  L  Q  L  K  L  R  M  G  L  V  L  L  I  L  V  K  V  G  R  G  I  L  *  K  W  C  I  M  E  L  N  M  V  I  C  S  *  F  R  K  L  M  M  C  *  R  M  R  V  G  *  V  I  L  N  W  L  I  F  S  P  N  G  T  V  G  N  W  R  A  F  *  L  K  L  Q  R  I  Y  S  M  *  R  M  N  *  L  E  M  G  S  *  W  T  R  F  W  I  R  Q  E  *  R  G  R  G  N  G  L  C  S  R  R  R  S  C  L  L  Q  L  R  Q  L  L  L  R  *  T  V  G  T  *  V  D  *  R  M  R  G  *  K  P  Q  R  F  L  G  R  K  V  *  R  R  K  *  V  L  I  L  M  V  L  A  V  L  I  R  R  D  *  L  M  M  *  G  R  H  C  M  R  R  K  S  V  V  M  L  R  G  *  I  C  *  G  Q  R  A  L  R  K  V  G  I  *  I  W  E  R  W  L  G  F  G  K  V  V  V  L  S  G  Q  C  F  W  I  V  L  R  R  R  I  R  G  I  L  I  W  L  T  *  W  L  T  R  S  S  Q  G  R  W  C  R  G  K  L  L  G  G  E  W  W  D  L  L  F  R  R  E  L  V  F  L  E  C  L  L  V  F  S  I  S  T  P  T  G  V  L  G  F  P  R  T  L  C  R  L  R  G  T  I  S  G  H  I  L  M  R  E  L  T  S  Q  E  H  T  I  P  S  G  Q  N  L  L  G  K  L  E  C  N  A  A  A  A  I  A  D  Y  D  Q  N  L  W  Y  *  S  R  F  S  T  F  F  V  *  F  C  S  *  *  C  C  M  P  L  N  I  I  G  P  S  L  S  K  *  L  L  P  L  K  *  K  K  L  L  F  L  H  Y  I  L  M  H  T  N  Y  L  H  F  Y  L  Y  I  W  I  I  T  A  P  H  S  P  N  E  Y  F  V  *  F  E  D  I  M  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48000" stop="49115"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSKGLLYLGMGVSGGEEGARNGPSLMPGGSYGAYTNIKDILEKVAAQVEDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKNAGGLSNSELADIFAEWNRGELESFLIEITADIFNVKDELTGNGELVDKILDKTGMKGTGKWTVQQAAELSIAAPTIAASLDSRYMSGLKDERVEASEIFRKEGLKEEISSDINGISSVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSSEKGWNLNLGEMARIWKGGCIIRAVFLDRIKKAYQRNPNLANLMVDTEFAREMVQRQAAWRRVVGLAVQKGISVPGMSASLQYFDTYRRSRLPANLVQAQRDYFGAHTYERVDKPGAYHTEWAKLARKARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49173" stop="49382"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFFRLVLQLIMLYAFEHYRAFAIEMTSSIEVKEVAFPTLHFDAYKLPALLFIYMDYYSSSLSKRIFCII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="68877" PGL_stop="70413"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68877" e_stop="69178"/>
            <exon e_start="69852" e_stop="70021"/>
            <exon e_start="70352" e_stop="70413"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="0.983"/>
          <exon-intron don_prob="1.000" acc_prob="0.909" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="68877" e_stop="69178" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="69179" i_stop="69851" i_length="673"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69852" e_stop="70021" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.909">
            <gDNA_intron_boundary i_start="70022" i_stop="70351" i_length="330"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70352" e_stop="70413" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68877" stop="69178"/>
              <exon start="69852" stop="70021"/>
              <exon start="70352" stop="70413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326427" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATAATGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAAT : ATTTTATTATTGAATTTTAGGAAAGAAATATTGCCTTTCATTCCAAAGACAGAGGAATGTCCCAAGGAGGAAGACATTAATGATGACTGTTCTGATATTCTTGTTGTTAGTAATTCCATGGCTATGGCAGTTCATAATGAGGATGCAAATGTTGCTCTTGTCGGACACAC : TTATTTGGTTAAGGTGACATTATCTAATGGAACAACATTCACTGCTTATACATATGCTGGAG</gDNA_template>
            <first_frame> Q  *  W  P  W  E  A  Q  I  W  N  P  T  S  *  K  C  M  N  L  A  L  L  K  K  M  R  V  S  K  L  G  F  *  *  A  K  N  S  P  N  *  Y  K  T  G  Y  L  L  T  L  F  F  K  I  N  Y  S  L  L  L  N  S  Q  I  L  K  H  L  Y  I  L  Y  L  K  Q  T  R  T  S  S  Q  I  I  G  M  N  S  K  E  L  L  K  E  V  V  S  P  F  S  I :   F  Y  Y  *  I  L  G  K  K  Y  C  L  S  F  Q  R  Q  R  N  V  P  R  R  K  T  L  M  M  T  V  L  I  F  L  L  L  V  I  P  W  L  W  Q  F  I  M  R  M  Q  M  L  L  L  S  D  T   : L  I  W  L  R  *  H  Y  L  M  E  Q  H  S  L  L  I  H  M  L  E </first_frame>
            <second_frame>  N  N  G  H  G  K  H  K  F  G  T  Q  Q  V  R  N  V  *  I  W  P  F  *  R  R  *  G  F  P  N  W  V  F  D  R  P  K  I  L  Q  I  N  T  K  Q  V  I  Y  *  P  Y  S  S  K  S  I  T  P  F  C  S  T  P  K  F  S  N  T  Y  T  Y  F  I  S  N  K  Q  E  Q  V  P  K  L  L  E  *  T  Q  R  N  C  S  R  K  W  C  P  L  S  Q   : Y  F  I  I  E  F  *  E  R  N  I  A  F  H  S  K  D  R  G  M  S  Q  G  G  R  H  *  *  *  L  F  *  Y  S  C  C  *  *  F  H  G  Y  G  S  S  *  *  G  C  K  C  C  S  C  R  T  H  :  L  F  G  *  G  D  I  I  *  W  N  N  I  H  C  L  Y  I  C  W   </second_frame>
            <third_frame>   I  M  A  M  G  S  T  N  L  E  P  N  K  L  E  M  Y  E  F  G  P  F  E  E  D  E  G  F  Q  I  G  F  L  I  G  Q  K  F  S  K  L  I  Q  N  R  L  S  T  D  L  I  L  Q  N  Q  L  L  P  F  A  Q  L  P  N  S  Q  T  L  I  H  T  L  S  Q  T  N  K  N  K  F  P  N  Y  W  N  E  L  K  G  I  A  Q  G  S  G  V  P  F  L  N  :  I  L  L  L  N  F  R  K  E  I  L  P  F  I  P  K  T  E  E  C  P  K  E  E  D  I  N  D  D  C  S  D  I  L  V  V  S  N  S  M  A  M  A  V  H  N  E  D  A  N  V  A  L  V  G  H  T :   Y  L  V  K  V  T  L  S  N  G  T  T  F  T  A  Y  T  Y  A  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68879" stop="69178"/>
                    <exon start="69852" stop="70021"/>
                    <exon start="70352" stop="70412"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMAMGSTNLEPNKLEMYEFGPFEEDEGFQIGFLIGQKFSKLIQNRLSTDLILQNQLLPFAQLPNSQTLIHTLSQTNKNKFPNYWNELKGIAQGSGVPFLNILLLNFRKEILPFIPKTEECPKEEDINDDCSDILVVSNSMAMAVHNEDANVALVGHTYLVKVTLSNGTTFTAYTYAG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="83477" PGL_stop="83895"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83477" e_stop="83895"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="83477" e_stop="83895" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83477" stop="83895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332168" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACAGTTCCATCAAATACGAAGAGAAGACTATTAGAAATGTGTCGGAAACAATTACTATCCTACGTGATTACAGTCGTTGCAGTTTGTTTCTGGTTGGTCGAAGGCCTAATGGCGTTGTACCTCTTGCATTGAGCCAGAGGACTGATTGTCCTGAACTCGGGCCAGTCGGGAGTTTGTTGACTTCACAGGAATACGCCACAACAGCATCAGTTCTGGTGGTGCAACAGTATTATGATAAGTTATATGCAACTAATCCACATCAGAGGGATGTAGCTTCAGTTCCAGAGAACTAATTAGGGGCTCTTTCATTGATCTTTGAATCATAATGACTGTTTTTCATTCTTGACAGTTTGATATAACTATCTTTTTGAGCTGTAATCATCACTTTTTAAATACAAGGATTCTGGTTGCTTTTTTT</gDNA_template>
            <first_frame> D  S  S  I  K  Y  E  E  K  T  I  R  N  V  S  E  T  I  T  I  L  R  D  Y  S  R  C  S  L  F  L  V  G  R  R  P  N  G  V  V  P  L  A  L  S  Q  R  T  D  C  P  E  L  G  P  V  G  S  L  L  T  S  Q  E  Y  A  T  T  A  S  V  L  V  V  Q  Q  Y  Y  D  K  L  Y  A  T  N  P  H  Q  R  D  V  A  S  V  P  E  N  *  L  G  A  L  S  L  I  F  E  S  *  *  L  F  F  I  L  D  S  L  I  *  L  S  F  *  A  V  I  I  T  F  *  I  Q  G  F  W  L  L  F   </first_frame>
            <second_frame>  T  V  P  S  N  T  K  R  R  L  L  E  M  C  R  K  Q  L  L  S  Y  V  I  T  V  V  A  V  C  F  W  L  V  E  G  L  M  A  L  Y  L  L  H  *  A  R  G  L  I  V  L  N  S  G  Q  S  G  V  C  *  L  H  R  N  T  P  Q  Q  H  Q  F  W  W  C  N  S  I  M  I  S  Y  M  Q  L  I  H  I  R  G  M  *  L  Q  F  Q  R  T  N  *  G  L  F  H  *  S  L  N  H  N  D  C  F  S  F  L  T  V  *  Y  N  Y  L  F  E  L  *  S  S  L  F  K  Y  K  D  S  G  C  F  F  </second_frame>
            <third_frame>   Q  F  H  Q  I  R  R  E  D  Y  *  K  C  V  G  N  N  Y  Y  P  T  *  L  Q  S  L  Q  F  V  S  G  W  S  K  A  *  W  R  C  T  S  C  I  E  P  E  D  *  L  S  *  T  R  A  S  R  E  F  V  D  F  T  G  I  R  H  N  S  I  S  S  G  G  A  T  V  L  *  *  V  I  C  N  *  S  T  S  E  G  C  S  F  S  S  R  E  L  I  R  G  S  F  I  D  L  *  I  I  M  T  V  F  H  S  *  Q  F  D  I  T  I  F  L  S  C  N  H  H  F  L  N  T  R  I  L  V  A  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83477" stop="83770"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSSIKYEEKTIRNVSETITILRDYSRCSLFLVGRRPNGVVPLALSQRTDCPELGPVGSLLTSQEYATTASVLVVQQYYDKLYATNPHQRDVASVPEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="86556" PGL_stop="85979"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86556" e_stop="85979"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="86556" e_stop="85979" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86556" stop="85979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346534" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGACCGGTACCTTGTTCAGCTGAATCAATAAGATCAACTCCTGTCAAATCTTCTAAGGAATCTGACGGTTTCAGTAACAGCTTTGTAAATAAACCATGTACGACGTCCCCATATACAAGGGTGATGGATAAGGTTTATAGTAGTAGCGACCAGAAGCCGAGGAAGGTAGCCAATGGAGCGGAGCCAAGGAGATGACAGAATGTTGAAGAGCGAACTGATTATGCAGTGAATCAGACAAGAACTGTTACTGTTGCATTTGTCTATTCCTTCTAACTGCTGTTCGACATGCAAAATATGGTAGAATCTGTATAGCCTGTCACATGGAAGAAATGAATGTTGTAATCTTATGCTGGGCTGGGTGACTTGGGATCATTGTGCTTGTACCATTACATGTTACATGGATGCCAGACACATCGATACGCTTTCAGCATTGCCTCAGTGTACATCATTGATGAGGCAATATGGTAGAAAAGTTCTCTATGTAGTCTCTGGTATTCCGGAGGTATTCGTTACGTGTGTGTAAATGTATTCATTATGTGATATCTATGGTCAGGACATTTTCATACTCAATTCTGTTG</gDNA_template>
            <first_frame> G  P  V  P  C  S  A  E  S  I  R  S  T  P  V  K  S  S  K  E  S  D  G  F  S  N  S  F  V  N  K  P  C  T  T  S  P  Y  T  R  V  M  D  K  V  Y  S  S  S  D  Q  K  P  R  K  V  A  N  G  A  E  P  R  R  *  Q  N  V  E  E  R  T  D  Y  A  V  N  Q  T  R  T  V  T  V  A  F  V  Y  S  F  *  L  L  F  D  M  Q  N  M  V  E  S  V  *  P  V  T  W  K  K  *  M  L  *  S  Y  A  G  L  G  D  L  G  S  L  C  L  Y  H  Y  M  L  H  G  C  Q  T  H  R  Y  A  F  S  I  A  S  V  Y  I  I  D  E  A  I  W  *  K  S  S  L  C  S  L  W  Y  S  G  G  I  R  Y  V  C  V  N  V  F  I  M  *  Y  L  W  S  G  H  F  H  T  Q  F  C   </first_frame>
            <second_frame>  D  R  Y  L  V  Q  L  N  Q  *  D  Q  L  L  S  N  L  L  R  N  L  T  V  S  V  T  A  L  *  I  N  H  V  R  R  P  H  I  Q  G  *  W  I  R  F  I  V  V  A  T  R  S  R  G  R  *  P  M  E  R  S  Q  G  D  D  R  M  L  K  S  E  L  I  M  Q  *  I  R  Q  E  L  L  L  L  H  L  S  I  P  S  N  C  C  S  T  C  K  I  W  *  N  L  Y  S  L  S  H  G  R  N  E  C  C  N  L  M  L  G  W  V  T  W  D  H  C  A  C  T  I  T  C  Y  M  D  A  R  H  I  D  T  L  S  A  L  P  Q  C  T  S  L  M  R  Q  Y  G  R  K  V  L  Y  V  V  S  G  I  P  E  V  F  V  T  C  V  *  M  Y  S  L  C  D  I  Y  G  Q  D  I  F  I  L  N  S  V  </second_frame>
            <third_frame>   T  G  T  L  F  S  *  I  N  K  I  N  S  C  Q  I  F  *  G  I  *  R  F  Q  *  Q  L  C  K  *  T  M  Y  D  V  P  I  Y  K  G  D  G  *  G  L  *  *  *  R  P  E  A  E  E  G  S  Q  W  S  G  A  K  E  M  T  E  C  *  R  A  N  *  L  C  S  E  S  D  K  N  C  Y  C  C  I  C  L  F  L  L  T  A  V  R  H  A  K  Y  G  R  I  C  I  A  C  H  M  E  E  M  N  V  V  I  L  C  W  A  G  *  L  G  I  I  V  L  V  P  L  H  V  T  W  M  P  D  T  S  I  R  F  Q  H  C  L  S  V  H  H  *  *  G  N  M  V  E  K  F  S  M  *  S  L  V  F  R  R  Y  S  L  R  V  C  K  C  I  H  Y  V  I  S  M  V  R  T  F  S  Y  S  I  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86255" stop="86034"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLYSLSHGRNECCNLMLGWVTWDHCACTITCYMDARHIDTLSALPQCTSLMRQYGRKVLYVVSGIPEVFVTCV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86556" stop="86362"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPVPCSAESIRSTPVKSSKESDGFSNSFVNKPCTTSPYTRVMDKVYSSSDQKPRKVANGAEPRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 18 chains have been computed
$ 
$ memory statistics:
$ 20304 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 2030 bytes was the average size of a spliced alignment
$ 16688 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1668 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 19 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 00:19:59
-->
