<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 00:12:49"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701463" ref_strand="+" ref_description="SGN-E701463 [FA16AB12]">
      <seq>ataagtttgcacttgatcacataccgaaagggcgagctgaagatttgtacaggaagtttgtggcatttgaaaagcagtatggtgatagagaaggtattgaggacgctatagttggaaaaaggaggtttcagtatgaggatgaagtgaggaagaatccacgtaactatgacacgtggtttgattatattcggctggaagagagcgttggaaataaagagaggattagagaggtttatgagagagccattgctaatgttcctcctgctgaagagaagcgatattggcagcgatacatttacttatggattaattatgcattatatgaagagcttgatgcagaagacatggaaagaaccagagatgtctacagggagtgtcttaagctgattccacatcagaagttttcatttgcaaagatttggttgttggctgcccaatttgagattcggcagttaagactcaaggaggcgcgacttctacttggagaagcaattggaagggctcctaaagacaagatatttaagaagtacatagagatagagctgcattttggaaacatagatcgttgcagaaagctttatgagaagtacttggaatggtctccagaaaattgctatgcttggagcaaattcgccgagttggagaggtccttgtatgaaacggatagagccagggctatttttgagcttgcaattgaccaacctgctctggatatgccggagctattatggaaggcttacatcgactttgaaatttctgagggtgaatttgaaagaactaaagcactatatgaaagacttcttaaccgcacaaaacacttgaaggtgtgggataagttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10612" stop="18581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10912" g_stop="11215" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11216" i_stop="11313" i_length="98">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11314" g_stop="11379" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="370" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11380" i_stop="15814" i_length="4435">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15815" g_stop="15959" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="515" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15960" i_stop="16063" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16064" g_stop="16282" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="734" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16283" i_stop="18175" i_length="1893">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18176" g_stop="18281" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="841" r_length="107" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E701463" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10912" e_stop="11215"/>
          <exon e_start="11314" e_stop="11379"/>
          <exon e_start="15815" e_stop="15959"/>
          <exon e_start="16064" e_stop="16282"/>
          <exon e_start="18176" e_stop="18281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGTTTGCACTTGATCACATACCGAAAGGGCGAGCTGAAGATTTGTACAGGAAGTTTGTGGCATTTGAAAAGCAGTATGGTGATAGAGAAGGTATTGAGGACGCTATAGTTGGGAAAAGGAGGTTTCAGTATGAGGATGAAGTGAGGAAGAATCCACGTAACTATGACACGTGGTTTGATTATATTCGGCTGGAAGAGAGCGTTGGAAATAAAGAGAGGATTAGAGAGGTTTATGAGAGAGCCATTGCTAATGTTCCTCCTGCTGAAGAGAAGCGATATTGGCAGCGATACATTTACTTATGGTAAATTTGACAACCTTTATTTTAATGTGATAATTTTAGTTCTATTTTGGATACCTTACCATGCATTTATGTTCATTGGCTGACTTTGCGCTTTTTAGGATTAATTATGCATTATATGAAGAGCTTGATGCAGAAGACATGGAAAGAACCAGAGATGTCTACAGGTAGGATATCGTTGTCTTGACTGAAATATCACTATGTAACTCATTTGGTTGATGAACTGTATTATTTATGCTTTATGTCGTTGTATCCAGATTGTCTCTTCCTTAATTAGGGTGCTCTGTCTCAAGGCCTAAGAAATTTTCTTGGTGCAGCCCAAACCCTTTTGAGCTCGATGCACCCATCATCTGCGATATTCCCAACTTTAAGATTCCAAGGGGTTCTCTTTCAGTTGTTTGGTTGCTAGTTTCAAAATTTAACCTTAATTCCATCAGGCTTTGAGTAGAATTGGGGTTTCTTGGTGTGGGTTTTATTGATTCTGCAGTTTTATATGTTTTTTTTTTTGAGAAGGTAACATTTTTGTTTATTGACAAGTCAGTACATGGTTCGCACTGAAATCATATTTACAGCAAATGCAAAAAGACATAACTGACTCTAATTCTAACAAGATCCTAGGATGTCTATAATTGAGTCAGTGTCCTCTGAAGTATATTTGTTTGCACCAGAAACAAAAAGTCTTAATGCAATTTAGTTTGACCATCTGTAGATCACAATTTTTGCTCTCAAAACATCTTGAATTCCTTTCCTTCCATATTGTCCACAAGATACAAGCCGGGACAATCCTCCATCTGTCTTTGTCAGCGGCTCCTGTTCCTGCTTCCTCTCAACTATATAGCAAATGAGTTATTTTGTTAGGCATGACCCAACTAATGCCCCTAAGGCTAACAAAAATTTTCCACGTGCTGAGTTGGTCTTTGTTGGGGTTACCTTCAGTGACTGGTTTTGTGATGGGAAGTCGAATTTCCCTAATTCTTGTGTGTTTGGTTCGACCGACAACTTCTCTTAGATGAAATCATTCTCCAGTGTTTGATCATTTTCCACCTAAGGGGGGCAGGAATCACTTTTCTTTATCAGTGCCCCTACTCATGCTACTTATCTTGCTTTAACCTAACATAGAAACATTATTTTCAATCTTTAGTATCCAAAATTATCATAAGAACATTATCCTCATATCCCACCCTCCACCTTGTATATTATATTTCACTTACTTTATACCCAACTAAACACTGGAGGATATGATCCATGAGATAATTTTCAAGGTGAAGGATTGTGTCCCTACATGTCAAATTCGCCCAAATCATATGAATATGTTGATATTTGTTTTTAATTAGTTTGAAGGCTGTCACTAGCTGTGTAGTCTGGAGTCTGGACAGAGTTTCTGCATCAACTTAATGAGGCCACCAGTAGTTTCAGTTCCCAAAATGAGTACAAATTGGAAGGGATCGACTTACTTTAGAGATATTTTGCATTCTTAAACCCCTACTACTTGATAGTTGAGCTCATATCTATTGCTTAGGGTGATAATACTAAGGATCTGCATCTAGCGCAGTACCCTTAACTCAATCAAGTTCAATGCGCAGTCAATGAGTCAGAGTCGAAGTCCATTTAGTTACCTTCCTGAATGTTTAAAACTTCAGAAGTACTTAATGTTTAATCACAGTGCTGCATTCTTTTTAAAAGTACCTCGTGAAGGGAGAGGTTTGGAACTATGAGCTCATGCTTTTGGAGAAATCTACTGAAGTGCACACTTTCTGCAGCATTCACTTCATGATATTTTAAGAAGAGATGTACAACAAGCAAATGGTATCTATGAGCATTAAATAATGGGGGTTGGTGATGGTTAGAAATAACAATCTATTTGAACTTTCAGTTTTTTGGGTGAACTCATTGAGACTAAGATGGTTTGGGTGGGTAATGTTGTATGTTCTAGTATTCTCTATGATAGCAGCACTTAAATCCATAACGTGGATATTCTCTGGAAATATGTACAAACTTGGAGCAAGTATAGAGGGACCAACCATTGCTTTGGGAAATACCTGTGTTTTACCCCTTTCAAGTTGGTAATTATAAAATTGAATGAACTGGTAAATTTGCTAAACCAGATCGATATTGGGTCTGAGGAGAGATTAAGGTAGGCTGAAGAAGCATTGGAGGAGATGTGATTAGAGAGGACATGTCACTCATGCAACTTACAAAGGACATGACCGTAAATAGGAGGGTGTGGAGGTCAGGGATTAGGATAGGAGGTTAGTAGACAGTCTTGCGCGGTCTATTTTTTCTTACTAGTGTTATTGTTACTTTTCTTCTATTTTCTCTTTGTGATTTTCATTACCACTACTTGTCTCCTTTGTTTCGGTATTATATTATTATTGTTGTAACTGTTCTTTTCTCTAGTATTTTTAACATGGGTTTTTCGCTACTGTATTTCTTATTTTCAAATCTGCTTTGAATTGTTTTACTTGAGTCGAGGGTCTTCCGAAACCACCTCCCTGTCTTCACAACGCAAGGGTTTGTCAAATTATTAAAGCCAGAGCTCCACCTTATAAAAATAACTTATCAGTTTTAATTCTATTTCATTTCTTTGTCTTGCTCCACATGCATTTTCATGATCAATTTGCAAGTAATTACATTTTTCATTTGATTGGTTCTTTGAATTAGTTAATTTCTAGAGTACTTACTACTTGGTAAATGGTAATTACTTGTATTAAATGATCAAAACCATCAAATGAAGATGGTTTAAATACCTTTTTGATGCTTGTAAAGTTTCCAACTTAGCACTTCTTTTTGGGGGTGGCTATGTTTTTATTTGAATAGAACTGTTACTTGTCTTAGAAATGAAGATGTGAGGAATAATACAGTTGAGATTGTGAGACATCTTTAGATGTTGTATACAGTGCACAGGGTAGATCTATTTTTGGTTAATATGATACCATCTTTTCTTTTATGGGAGTTAATATGAGATCAATGTTTATTGCACAAAATATTCAGGGCAAAGCATTTGATTCCTAGGATTCCTTTCTTGCATTAAGCCACCAGAATTCTTCTCATGTTTCATTCTCAAAAAGTTCTCACGTCTATATATCTAGTTCCTTTCCCTGTCTTCTAGTTGATTTTATTGTCGTGTGACCTATATTACATGAATTAAGGTCATCCAGACTCATAAAGAGTTAAAAATTCCTTTTGGATTTCGTCAGGGAGTGCCTCAAGCTGATTCTTTGTAAGATGTCCTCATTTTGAAAAGATTTGGTTGTTCTAGTGATCCAGTTTAATTCTAATTGTCCTGGATGGAGGGCTAAATGTTGTGATATGGTGGTACTAGGTTTCTAATGATGACAAATGTAATCTAGGCTTACAAACTGTTCACTCCTTTTGTCTAGATTGTTCTTCCCTGATTACGAGGCTACGGGATTCTATGGCTTGTTTTTGAAAATAAATATTCCTCAATTAATTGCATGCTTTAAAGTCAACTACGATATGGTTGTTGAATTTTGTAATGGAACTGTTACGTTCAAAACTCCAACTTATAAGTTATAAAGTAGATGGGGTTTTAGAAGGTGGTTGGAAAAGTAGATATATTGTTTTGCCAATCGGTTGCGGTTTTTGGAAGAATATCTTGAAGGGATGGGATGGTTTTGCGGAAAGTATCTCAAATAAAGTTGGAAAAAGGAGGACCCCCCCCCCCCCCCACCCCTCCCTCTTGGTAAAAAAAATAAAAAGGACAATAACCGTAAGACATTTTAACACTGTATCTGGAAAACCAGGGACAAGCCAAAGACTCCCAGGAAAAAAATACCAACAGACCCCGCCGAACGCCAACCCATAATAGACACCATACTCCAGTACAGAACGACCCTAGCACTCACTAGATGCCTCCATCAAACGACCACGTTTAACACATACAACAAAAACTGATCCACGCACCACAGACCTACTACTACTCATCGTGCTGCGATCCGACGAAACAGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGATATGTTGCAGGTTAGTTGTTGTGTCGATAATTAATTATATAGTAATTACTAGTATATGTTGCCTTTTGTAAGTATTGCGGCGTTTGTGATTGGTAGTATGGAGATCAGGCCCGGCGTGGCAATTACCTATTACAGATGTTGTACGTAGCTGTGTTAATATATGGTGTTGTTGAGTGGTCTTGGATTTTTTGGTGTGTGTTGTGGCCCTCGACCCTAATTGTGGCTTGTTATGTAGGTGGTGTGGGATGGGTGGTGCTGTCCCCCCCCCCACCCCCAAAAAAAAAAAAAACCAAACCAAGCATAAAAAGAAGAGCATATGTGACATCGTGTATGCAAGACCATCTACTTATATCTGTGTAGCAAACATTGTTGACAAAGCATTTGATTATGAGGATACCCTTCTTACCTTTAGCCATCAGAATTTCTCTCTTTGCTATACATCTGAAATCTTTCTAATTTGTGATGTTACACAATTAAGGTCATTTAGTTATTTCGTATGTTGAAAGGATCCTTTTCATTTCATCAGGGAGTGTCTTAAGCTGATTCCACATCAGAAGTTTTCATTTGCAAAGATTTGGTTGTTGGCTGCCCAATTTGAGATTCGGCAGTTAAGACTCAAGGAGGCGCGACTTCTACTTGGAGAAGCAATTGGAAGGGCTCCTAAAGACAAGGTAGTCCCCTCTCCCCAGACATCTTTATGTTGGTTACTAATATTTCTGAGGGATATCCTTTGCATGTTACCTAACCTATACATGTCTTCTCTATTATAATACAGATATTTAAGAAGTACATAGAGATAGAGCTGCATTTTGGAAACATAGATCGTTGCAGAAAGCTTTATGAGAAGTACTTGGAATGGTCTCCAGAAAATTGCTATGCTTGGAGCAAATTCGCCGAGTTGGAGAGGTCCTTGTATGAAACGGATAGAGCCAGGGCTATTTTTGAGCTTGCAATTGACCAACCTGCTCTGGATATGCCGGAGCTATTATGGAAGGTATTGTGTTGTTCTACTAGCTGATATGCTTGTGTTTGGTTAAAAGTTATTTTAGAATGTAATTGTCCCCTAGCAACTCATGTTCTTGCTTAGTGCTGTTGCTGGGACTCCAGGCAGTTCTATGCTTGCATTTTTCTGTAGCTCATTGCATTAGGATGACTGTTTTCAGCATAGTTAAGCAACTTGATTTTGGTAGAACCCAGAAAAAGGACCACCTCAATAGTCACTTATTAACTGGAGGTTAGTAGGTCTCACCAGCAATGTTCGAAAGCATTATAAGGAAAGATTTAGCACCATTTTAACATTGTTTTATGTAGGTCAAGTCCATCTAGATTCCTTATGTACTAATAAGCCGGTCAAGGACATCTGTTCCTAATTACAGGAGAAGTTTTACCATTGAGATCCAATTGAATAATCCTGTATGCCTTTTTTTTATGAACTGACTGTGTTGTATGTTTTCCCGACTTAAAGAGAAATTTCTTTCGATTCCCACTGTCCATACCCATGGCTATCATTTTGAAAATACCAAACTCCATGGTCTTCATAAGTGTCATCAATATCTGCAAGGTACATGATTTGAAGATTTCCAGGAAGCTGGTAATAAAAGAATAGTTGTGAAGGACCCCAAGACCTAGTTCAAGTGACAGTTTGAGGGACTTGTGGCTTGCATCAAAGATTTGAGCCATGCGCCATGAGAACTAAGCCTGGTATTGAAGTGGAGAAGGGTAGTGGGGAAGACCCACTATCCCTAGTTTCTAAGGTTGCAGCGTGTCCGAAGGATAGGCCTCTGACAGTTTTTTCGGTCAAAAAAAAATTAAAAGAGTACTTGTGGAAGGAATGTCTGCACTAGGGAAAACAATTAACTAGTTTGAGCATAGGTTTACCCTTTTTCTCAGGATGTTGATAAAAAAGGGATAAGAACTGCACTGGGCATGAAAAGAATTCAAAGCTTTCGGGAAAATGCTCATCATGCTCTTTTATGTTATGCATTTGGAGCAGTGTTATCAAAAACGAAAAGCGCAAAAAGGCTCTAGGTCCGTGGGGCTTAAAGCGCAAATAAAGCGTGAGCTTTGATGAAAAAAGGCGCAAAGGGAGAAAAAAATACAAATATATATGTTTAGTCCAAGTCTAACAATTATAAACATGAATGACAAATATATGACCAAAAAATTGAAAAAAAAATCATGATAAAGTGAAATATCGATTGTTTAGTGTCACTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAAAACCTTATGACGACACTGAAGCGCACATAAAGCGAGGCGAAGCACTCAACACGTTTTGAGCCTCGCTTCAGGGCTTAAGCGCGCTTAAAGCGAGCCTTTGATAATACTTGATTTGGAGACTAACGGACAGTCACCTCTATACTTTAAGCAAGGAATTCAGCCTACAAAAGTTGAAAACTTGGGTCTGTGGATTCATTATTTGTCTTGCGCTCTACTTGTTCCTTGTCGTTTAATCATTGAATTCTCAGGCCGCCTTTCTGGGTATTCCTCAAAACCATTTTTGTACCTTTAGTGTGCTGCTCCCTTATATTAACAAAAGACTAGTATTCTCACCCAGATATTTTGGTGTGGTCATGGACTGTCTAGTTCAGTAATCATCATTGCTTTCAAGTCTATAAGACAACTTAGTGGGAAAAATTAAATTCGCATAGTGGTGAAGCTTCCCAGAAGCATTCATGTTCAGAGAACTATCTTGTAGAATGGGAAGAAATGGTCTCTCCTGTTATGTTGAAGGCCTTTTTTCATTTTAATTTTTCTGCTCTTGGTTAAGGGTGAGACAGATCATGTGCAATTTAGTTGAGGTATATTCAATTACATACATTCTAACAAGCTTCTGTTATGAATTTCTGATAGGCTTACATCGACTTTGAAATTTCTGAGGGTGAATTTGAAAGAACTAGAGCACTATATGAAAGACTTCTTAACCGCACAAAACACTTGAAGGTGT-GGATAAGTTATG</genome_strand>
        <mrna_strand>ATAAGTTTGCACTTGATCACATACCGAAAGGGCGAGCTGAAGATTTGTACAGGAAGTTTGTGGCATTTGAAAAGCAGTATGGTGATAGAGAAGGTATTGAGGACGCTATAGTTGGAAAAAGGAGGTTTCAGTATGAGGATGAAGTGAGGAAGAATCCACGTAACTATGACACGTGGTTTGATTATATTCGGCTGGAAGAGAGCGTTGGAAATAAAGAGAGGATTAGAGAGGTTTATGAGAGAGCCATTGCTAATGTTCCTCCTGCTGAAGAGAAGCGATATTGGCAGCGATACATTTACTTATG..................................................................................................GATTAATTATGCATTATATGAAGAGCTTGATGCAGAAGACATGGAAAGAACCAGAGATGTCTACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTGTCTTAAGCTGATTCCACATCAGAAGTTTTCATTTGCAAAGATTTGGTTGTTGGCTGCCCAATTTGAGATTCGGCAGTTAAGACTCAAGGAGGCGCGACTTCTACTTGGAGAAGCAATTGGAAGGGCTCCTAAAGACAAG........................................................................................................ATATTTAAGAAGTACATAGAGATAGAGCTGCATTTTGGAAACATAGATCGTTGCAGAAAGCTTTATGAGAAGTACTTGGAATGGTCTCCAGAAAATTGCTATGCTTGGAGCAAATTCGCCGAGTTGGAGAGGTCCTTGTATGAAACGGATAGAGCCAGGGCTATTTTTGAGCTTGCAATTGACCAACCTGCTCTGGATATGCCGGAGCTATTATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACATCGACTTTGAAATTTCTGAGGGTGAATTTGAAAGAACTAAAGCACTATATGAAAGACTTCTTAACCGCACAAAACACTTGAAGGTGTGGGATAAGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546184" ref_strand="+" ref_description="SGN-E546184 [TUS-69-G17]">
      <seq>catttgaaaagcagtatggtgatagagaaggtattgaggacgctatagttggaaaaaggaggtttcagtatgaggatgaagtgaggaagaatccacgtaactatgacacgtggtttgattatattcggctggaagagagcgttggaaataaagagaggattagagaggtttatgagagagccattgctaatgttcctcctgctgaagagaagcgatattggcagcgatacatttacttatggattaattatgcattatatgaagagcttgatgcagaagacatggaaagaaccagagatgtctacagggagtgtcttaagctgattccacatcagaagttttcatttgcaaagatttggttgttggctgcccagtttgagattcggcagttaagactcaaggaggcgcgacttctacttggagaagcaattggaagggctcctaaagacaagatatttaagaagtacatagagatagagctgcattttggaaacatagatcgttgcagaaagctttatgagaagtacttggaatggtctccagaaaattgctatgcttggagcaaattcgccgagttggagaggtccttgtatgaaacggatagagccagggctatttttgagcttgcaattgaccaacctgctctggatatgccggagctattatggaaggcttacatcgactttgaaatctctgagggtgaatttgaaagaactagagcactatatgaaagacttcttaaccgcacaaaacacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10675" stop="18563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10975" g_stop="11215" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11216" i_stop="11313" i_length="98">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11314" g_stop="11379" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="307" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11380" i_stop="15814" i_length="4435">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15815" g_stop="15959" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="452" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15960" i_stop="16063" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16064" g_stop="16282" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="671" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16283" i_stop="18175" i_length="1893">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18176" g_stop="18263" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="759" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E546184" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10975" e_stop="11215"/>
          <exon e_start="11314" e_stop="11379"/>
          <exon e_start="15815" e_stop="15959"/>
          <exon e_start="16064" e_stop="16282"/>
          <exon e_start="18176" e_stop="18263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGAAAAGCAGTATGGTGATAGAGAAGGTATTGAGGACGCTATAGTTGGGAAAAGGAGGTTTCAGTATGAGGATGAAGTGAGGAAGAATCCACGTAACTATGACACGTGGTTTGATTATATTCGGCTGGAAGAGAGCGTTGGAAATAAAGAGAGGATTAGAGAGGTTTATGAGAGAGCCATTGCTAATGTTCCTCCTGCTGAAGAGAAGCGATATTGGCAGCGATACATTTACTTATGGTAAATTTGACAACCTTTATTTTAATGTGATAATTTTAGTTCTATTTTGGATACCTTACCATGCATTTATGTTCATTGGCTGACTTTGCGCTTTTTAGGATTAATTATGCATTATATGAAGAGCTTGATGCAGAAGACATGGAAAGAACCAGAGATGTCTACAGGTAGGATATCGTTGTCTTGACTGAAATATCACTATGTAACTCATTTGGTTGATGAACTGTATTATTTATGCTTTATGTCGTTGTATCCAGATTGTCTCTTCCTTAATTAGGGTGCTCTGTCTCAAGGCCTAAGAAATTTTCTTGGTGCAGCCCAAACCCTTTTGAGCTCGATGCACCCATCATCTGCGATATTCCCAACTTTAAGATTCCAAGGGGTTCTCTTTCAGTTGTTTGGTTGCTAGTTTCAAAATTTAACCTTAATTCCATCAGGCTTTGAGTAGAATTGGGGTTTCTTGGTGTGGGTTTTATTGATTCTGCAGTTTTATATGTTTTTTTTTTTGAGAAGGTAACATTTTTGTTTATTGACAAGTCAGTACATGGTTCGCACTGAAATCATATTTACAGCAAATGCAAAAAGACATAACTGACTCTAATTCTAACAAGATCCTAGGATGTCTATAATTGAGTCAGTGTCCTCTGAAGTATATTTGTTTGCACCAGAAACAAAAAGTCTTAATGCAATTTAGTTTGACCATCTGTAGATCACAATTTTTGCTCTCAAAACATCTTGAATTCCTTTCCTTCCATATTGTCCACAAGATACAAGCCGGGACAATCCTCCATCTGTCTTTGTCAGCGGCTCCTGTTCCTGCTTCCTCTCAACTATATAGCAAATGAGTTATTTTGTTAGGCATGACCCAACTAATGCCCCTAAGGCTAACAAAAATTTTCCACGTGCTGAGTTGGTCTTTGTTGGGGTTACCTTCAGTGACTGGTTTTGTGATGGGAAGTCGAATTTCCCTAATTCTTGTGTGTTTGGTTCGACCGACAACTTCTCTTAGATGAAATCATTCTCCAGTGTTTGATCATTTTCCACCTAAGGGGGGCAGGAATCACTTTTCTTTATCAGTGCCCCTACTCATGCTACTTATCTTGCTTTAACCTAACATAGAAACATTATTTTCAATCTTTAGTATCCAAAATTATCATAAGAACATTATCCTCATATCCCACCCTCCACCTTGTATATTATATTTCACTTACTTTATACCCAACTAAACACTGGAGGATATGATCCATGAGATAATTTTCAAGGTGAAGGATTGTGTCCCTACATGTCAAATTCGCCCAAATCATATGAATATGTTGATATTTGTTTTTAATTAGTTTGAAGGCTGTCACTAGCTGTGTAGTCTGGAGTCTGGACAGAGTTTCTGCATCAACTTAATGAGGCCACCAGTAGTTTCAGTTCCCAAAATGAGTACAAATTGGAAGGGATCGACTTACTTTAGAGATATTTTGCATTCTTAAACCCCTACTACTTGATAGTTGAGCTCATATCTATTGCTTAGGGTGATAATACTAAGGATCTGCATCTAGCGCAGTACCCTTAACTCAATCAAGTTCAATGCGCAGTCAATGAGTCAGAGTCGAAGTCCATTTAGTTACCTTCCTGAATGTTTAAAACTTCAGAAGTACTTAATGTTTAATCACAGTGCTGCATTCTTTTTAAAAGTACCTCGTGAAGGGAGAGGTTTGGAACTATGAGCTCATGCTTTTGGAGAAATCTACTGAAGTGCACACTTTCTGCAGCATTCACTTCATGATATTTTAAGAAGAGATGTACAACAAGCAAATGGTATCTATGAGCATTAAATAATGGGGGTTGGTGATGGTTAGAAATAACAATCTATTTGAACTTTCAGTTTTTTGGGTGAACTCATTGAGACTAAGATGGTTTGGGTGGGTAATGTTGTATGTTCTAGTATTCTCTATGATAGCAGCACTTAAATCCATAACGTGGATATTCTCTGGAAATATGTACAAACTTGGAGCAAGTATAGAGGGACCAACCATTGCTTTGGGAAATACCTGTGTTTTACCCCTTTCAAGTTGGTAATTATAAAATTGAATGAACTGGTAAATTTGCTAAACCAGATCGATATTGGGTCTGAGGAGAGATTAAGGTAGGCTGAAGAAGCATTGGAGGAGATGTGATTAGAGAGGACATGTCACTCATGCAACTTACAAAGGACATGACCGTAAATAGGAGGGTGTGGAGGTCAGGGATTAGGATAGGAGGTTAGTAGACAGTCTTGCGCGGTCTATTTTTTCTTACTAGTGTTATTGTTACTTTTCTTCTATTTTCTCTTTGTGATTTTCATTACCACTACTTGTCTCCTTTGTTTCGGTATTATATTATTATTGTTGTAACTGTTCTTTTCTCTAGTATTTTTAACATGGGTTTTTCGCTACTGTATTTCTTATTTTCAAATCTGCTTTGAATTGTTTTACTTGAGTCGAGGGTCTTCCGAAACCACCTCCCTGTCTTCACAACGCAAGGGTTTGTCAAATTATTAAAGCCAGAGCTCCACCTTATAAAAATAACTTATCAGTTTTAATTCTATTTCATTTCTTTGTCTTGCTCCACATGCATTTTCATGATCAATTTGCAAGTAATTACATTTTTCATTTGATTGGTTCTTTGAATTAGTTAATTTCTAGAGTACTTACTACTTGGTAAATGGTAATTACTTGTATTAAATGATCAAAACCATCAAATGAAGATGGTTTAAATACCTTTTTGATGCTTGTAAAGTTTCCAACTTAGCACTTCTTTTTGGGGGTGGCTATGTTTTTATTTGAATAGAACTGTTACTTGTCTTAGAAATGAAGATGTGAGGAATAATACAGTTGAGATTGTGAGACATCTTTAGATGTTGTATACAGTGCACAGGGTAGATCTATTTTTGGTTAATATGATACCATCTTTTCTTTTATGGGAGTTAATATGAGATCAATGTTTATTGCACAAAATATTCAGGGCAAAGCATTTGATTCCTAGGATTCCTTTCTTGCATTAAGCCACCAGAATTCTTCTCATGTTTCATTCTCAAAAAGTTCTCACGTCTATATATCTAGTTCCTTTCCCTGTCTTCTAGTTGATTTTATTGTCGTGTGACCTATATTACATGAATTAAGGTCATCCAGACTCATAAAGAGTTAAAAATTCCTTTTGGATTTCGTCAGGGAGTGCCTCAAGCTGATTCTTTGTAAGATGTCCTCATTTTGAAAAGATTTGGTTGTTCTAGTGATCCAGTTTAATTCTAATTGTCCTGGATGGAGGGCTAAATGTTGTGATATGGTGGTACTAGGTTTCTAATGATGACAAATGTAATCTAGGCTTACAAACTGTTCACTCCTTTTGTCTAGATTGTTCTTCCCTGATTACGAGGCTACGGGATTCTATGGCTTGTTTTTGAAAATAAATATTCCTCAATTAATTGCATGCTTTAAAGTCAACTACGATATGGTTGTTGAATTTTGTAATGGAACTGTTACGTTCAAAACTCCAACTTATAAGTTATAAAGTAGATGGGGTTTTAGAAGGTGGTTGGAAAAGTAGATATATTGTTTTGCCAATCGGTTGCGGTTTTTGGAAGAATATCTTGAAGGGATGGGATGGTTTTGCGGAAAGTATCTCAAATAAAGTTGGAAAAAGGAGGACCCCCCCCCCCCCCCACCCCTCCCTCTTGGTAAAAAAAATAAAAAGGACAATAACCGTAAGACATTTTAACACTGTATCTGGAAAACCAGGGACAAGCCAAAGACTCCCAGGAAAAAAATACCAACAGACCCCGCCGAACGCCAACCCATAATAGACACCATACTCCAGTACAGAACGACCCTAGCACTCACTAGATGCCTCCATCAAACGACCACGTTTAACACATACAACAAAAACTGATCCACGCACCACAGACCTACTACTACTCATCGTGCTGCGATCCGACGAAACAGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGATATGTTGCAGGTTAGTTGTTGTGTCGATAATTAATTATATAGTAATTACTAGTATATGTTGCCTTTTGTAAGTATTGCGGCGTTTGTGATTGGTAGTATGGAGATCAGGCCCGGCGTGGCAATTACCTATTACAGATGTTGTACGTAGCTGTGTTAATATATGGTGTTGTTGAGTGGTCTTGGATTTTTTGGTGTGTGTTGTGGCCCTCGACCCTAATTGTGGCTTGTTATGTAGGTGGTGTGGGATGGGTGGTGCTGTCCCCCCCCCCACCCCCAAAAAAAAAAAAAACCAAACCAAGCATAAAAAGAAGAGCATATGTGACATCGTGTATGCAAGACCATCTACTTATATCTGTGTAGCAAACATTGTTGACAAAGCATTTGATTATGAGGATACCCTTCTTACCTTTAGCCATCAGAATTTCTCTCTTTGCTATACATCTGAAATCTTTCTAATTTGTGATGTTACACAATTAAGGTCATTTAGTTATTTCGTATGTTGAAAGGATCCTTTTCATTTCATCAGGGAGTGTCTTAAGCTGATTCCACATCAGAAGTTTTCATTTGCAAAGATTTGGTTGTTGGCTGCCCAATTTGAGATTCGGCAGTTAAGACTCAAGGAGGCGCGACTTCTACTTGGAGAAGCAATTGGAAGGGCTCCTAAAGACAAGGTAGTCCCCTCTCCCCAGACATCTTTATGTTGGTTACTAATATTTCTGAGGGATATCCTTTGCATGTTACCTAACCTATACATGTCTTCTCTATTATAATACAGATATTTAAGAAGTACATAGAGATAGAGCTGCATTTTGGAAACATAGATCGTTGCAGAAAGCTTTATGAGAAGTACTTGGAATGGTCTCCAGAAAATTGCTATGCTTGGAGCAAATTCGCCGAGTTGGAGAGGTCCTTGTATGAAACGGATAGAGCCAGGGCTATTTTTGAGCTTGCAATTGACCAACCTGCTCTGGATATGCCGGAGCTATTATGGAAGGTATTGTGTTGTTCTACTAGCTGATATGCTTGTGTTTGGTTAAAAGTTATTTTAGAATGTAATTGTCCCCTAGCAACTCATGTTCTTGCTTAGTGCTGTTGCTGGGACTCCAGGCAGTTCTATGCTTGCATTTTTCTGTAGCTCATTGCATTAGGATGACTGTTTTCAGCATAGTTAAGCAACTTGATTTTGGTAGAACCCAGAAAAAGGACCACCTCAATAGTCACTTATTAACTGGAGGTTAGTAGGTCTCACCAGCAATGTTCGAAAGCATTATAAGGAAAGATTTAGCACCATTTTAACATTGTTTTATGTAGGTCAAGTCCATCTAGATTCCTTATGTACTAATAAGCCGGTCAAGGACATCTGTTCCTAATTACAGGAGAAGTTTTACCATTGAGATCCAATTGAATAATCCTGTATGCCTTTTTTTTATGAACTGACTGTGTTGTATGTTTTCCCGACTTAAAGAGAAATTTCTTTCGATTCCCACTGTCCATACCCATGGCTATCATTTTGAAAATACCAAACTCCATGGTCTTCATAAGTGTCATCAATATCTGCAAGGTACATGATTTGAAGATTTCCAGGAAGCTGGTAATAAAAGAATAGTTGTGAAGGACCCCAAGACCTAGTTCAAGTGACAGTTTGAGGGACTTGTGGCTTGCATCAAAGATTTGAGCCATGCGCCATGAGAACTAAGCCTGGTATTGAAGTGGAGAAGGGTAGTGGGGAAGACCCACTATCCCTAGTTTCTAAGGTTGCAGCGTGTCCGAAGGATAGGCCTCTGACAGTTTTTTCGGTCAAAAAAAAATTAAAAGAGTACTTGTGGAAGGAATGTCTGCACTAGGGAAAACAATTAACTAGTTTGAGCATAGGTTTACCCTTTTTCTCAGGATGTTGATAAAAAAGGGATAAGAACTGCACTGGGCATGAAAAGAATTCAAAGCTTTCGGGAAAATGCTCATCATGCTCTTTTATGTTATGCATTTGGAGCAGTGTTATCAAAAACGAAAAGCGCAAAAAGGCTCTAGGTCCGTGGGGCTTAAAGCGCAAATAAAGCGTGAGCTTTGATGAAAAAAGGCGCAAAGGGAGAAAAAAATACAAATATATATGTTTAGTCCAAGTCTAACAATTATAAACATGAATGACAAATATATGACCAAAAAATTGAAAAAAAAATCATGATAAAGTGAAATATCGATTGTTTAGTGTCACTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAAAACCTTATGACGACACTGAAGCGCACATAAAGCGAGGCGAAGCACTCAACACGTTTTGAGCCTCGCTTCAGGGCTTAAGCGCGCTTAAAGCGAGCCTTTGATAATACTTGATTTGGAGACTAACGGACAGTCACCTCTATACTTTAAGCAAGGAATTCAGCCTACAAAAGTTGAAAACTTGGGTCTGTGGATTCATTATTTGTCTTGCGCTCTACTTGTTCCTTGTCGTTTAATCATTGAATTCTCAGGCCGCCTTTCTGGGTATTCCTCAAAACCATTTTTGTACCTTTAGTGTGCTGCTCCCTTATATTAACAAAAGACTAGTATTCTCACCCAGATATTTTGGTGTGGTCATGGACTGTCTAGTTCAGTAATCATCATTGCTTTCAAGTCTATAAGACAACTTAGTGGGAAAAATTAAATTCGCATAGTGGTGAAGCTTCCCAGAAGCATTCATGTTCAGAGAACTATCTTGTAGAATGGGAAGAAATGGTCTCTCCTGTTATGTTGAAGGCCTTTTTTCATTTTAATTTTTCTGCTCTTGGTTAAGGGTGAGACAGATCATGTGCAATTTAGTTGAGGTATATTCAATTACATACATTCTAACAAGCTTCTGTTATGAATTTCTGATAGGCTTACATCGACTTTGAAATTTCTGAGGGTGAATTTGAAAGAACTAGAGCACTATATGAAAGACTTCTTAACCGCACAAAACACTTGA</genome_strand>
        <mrna_strand>CATTTGAAAAGCAGTATGGTGATAGAGAAGGTATTGAGGACGCTATAGTTGGAAAAAGGAGGTTTCAGTATGAGGATGAAGTGAGGAAGAATCCACGTAACTATGACACGTGGTTTGATTATATTCGGCTGGAAGAGAGCGTTGGAAATAAAGAGAGGATTAGAGAGGTTTATGAGAGAGCCATTGCTAATGTTCCTCCTGCTGAAGAGAAGCGATATTGGCAGCGATACATTTACTTATG..................................................................................................GATTAATTATGCATTATATGAAGAGCTTGATGCAGAAGACATGGAAAGAACCAGAGATGTCTACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTGTCTTAAGCTGATTCCACATCAGAAGTTTTCATTTGCAAAGATTTGGTTGTTGGCTGCCCAGTTTGAGATTCGGCAGTTAAGACTCAAGGAGGCGCGACTTCTACTTGGAGAAGCAATTGGAAGGGCTCCTAAAGACAAG........................................................................................................ATATTTAAGAAGTACATAGAGATAGAGCTGCATTTTGGAAACATAGATCGTTGCAGAAAGCTTTATGAGAAGTACTTGGAATGGTCTCCAGAAAATTGCTATGCTTGGAGCAAATTCGCCGAGTTGGAGAGGTCCTTGTATGAAACGGATAGAGCCAGGGCTATTTTTGAGCTTGCAATTGACCAACCTGCTCTGGATATGCCGGAGCTATTATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACATCGACTTTGAAATCTCTGAGGGTGAATTTGAAAGAACTAGAGCACTATATGAAAGACTTCTTAACCGCACAAAACACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358508" ref_strand="+" ref_description="SGN-E358508 [cLHT-22-A5]">
      <seq>atttgaaaagcagtatggtgatagagaaggtattgaggacgctatagttggaaaaaggaggtttcagtatgaggatgaagtgaggaagaatccacgtaactatgacacgtggtttgattatattcggctggaagagagcgttggaaataaagagaggattagagaggtttatgagagagccattgctaatgttcctcctgctgaagagaagcgatattggcagcgatacatttacttatggattaattatgcattatatgaagagcttgatgcagaagacatggaaagaaccagagatgtctacagggagtgtcttaagctgattccacatcagaagttttcatttgcaaagatttggttgttggctgcccagtttgagattcggcagttaagactcaaggaggcgcgacttctacttggagaagcaattggaagggctcctaaagacaagatatttaagaagtacatagagatagagctgcattttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10676" stop="16403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10976" g_stop="11215" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11216" i_stop="11313" i_length="98">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11314" g_stop="11379" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="306" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11380" i_stop="15814" i_length="4435">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15815" g_stop="15959" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="451" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15960" i_stop="16063" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16064" g_stop="16103" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="491" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E358508" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10976" e_stop="11215"/>
          <exon e_start="11314" e_stop="11379"/>
          <exon e_start="15815" e_stop="15959"/>
          <exon e_start="16064" e_stop="16103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAAAAGCAGTATGGTGATAGAGAAGGTATTGAGGACGCTATAGTTGGGAAAAGGAGGTTTCAGTATGAGGATGAAGTGAGGAAGAATCCACGTAACTATGACACGTGGTTTGATTATATTCGGCTGGAAGAGAGCGTTGGAAATAAAGAGAGGATTAGAGAGGTTTATGAGAGAGCCATTGCTAATGTTCCTCCTGCTGAAGAGAAGCGATATTGGCAGCGATACATTTACTTATGGTAAATTTGACAACCTTTATTTTAATGTGATAATTTTAGTTCTATTTTGGATACCTTACCATGCATTTATGTTCATTGGCTGACTTTGCGCTTTTTAGGATTAATTATGCATTATATGAAGAGCTTGATGCAGAAGACATGGAAAGAACCAGAGATGTCTACAGGTAGGATATCGTTGTCTTGACTGAAATATCACTATGTAACTCATTTGGTTGATGAACTGTATTATTTATGCTTTATGTCGTTGTATCCAGATTGTCTCTTCCTTAATTAGGGTGCTCTGTCTCAAGGCCTAAGAAATTTTCTTGGTGCAGCCCAAACCCTTTTGAGCTCGATGCACCCATCATCTGCGATATTCCCAACTTTAAGATTCCAAGGGGTTCTCTTTCAGTTGTTTGGTTGCTAGTTTCAAAATTTAACCTTAATTCCATCAGGCTTTGAGTAGAATTGGGGTTTCTTGGTGTGGGTTTTATTGATTCTGCAGTTTTATATGTTTTTTTTTTTGAGAAGGTAACATTTTTGTTTATTGACAAGTCAGTACATGGTTCGCACTGAAATCATATTTACAGCAAATGCAAAAAGACATAACTGACTCTAATTCTAACAAGATCCTAGGATGTCTATAATTGAGTCAGTGTCCTCTGAAGTATATTTGTTTGCACCAGAAACAAAAAGTCTTAATGCAATTTAGTTTGACCATCTGTAGATCACAATTTTTGCTCTCAAAACATCTTGAATTCCTTTCCTTCCATATTGTCCACAAGATACAAGCCGGGACAATCCTCCATCTGTCTTTGTCAGCGGCTCCTGTTCCTGCTTCCTCTCAACTATATAGCAAATGAGTTATTTTGTTAGGCATGACCCAACTAATGCCCCTAAGGCTAACAAAAATTTTCCACGTGCTGAGTTGGTCTTTGTTGGGGTTACCTTCAGTGACTGGTTTTGTGATGGGAAGTCGAATTTCCCTAATTCTTGTGTGTTTGGTTCGACCGACAACTTCTCTTAGATGAAATCATTCTCCAGTGTTTGATCATTTTCCACCTAAGGGGGGCAGGAATCACTTTTCTTTATCAGTGCCCCTACTCATGCTACTTATCTTGCTTTAACCTAACATAGAAACATTATTTTCAATCTTTAGTATCCAAAATTATCATAAGAACATTATCCTCATATCCCACCCTCCACCTTGTATATTATATTTCACTTACTTTATACCCAACTAAACACTGGAGGATATGATCCATGAGATAATTTTCAAGGTGAAGGATTGTGTCCCTACATGTCAAATTCGCCCAAATCATATGAATATGTTGATATTTGTTTTTAATTAGTTTGAAGGCTGTCACTAGCTGTGTAGTCTGGAGTCTGGACAGAGTTTCTGCATCAACTTAATGAGGCCACCAGTAGTTTCAGTTCCCAAAATGAGTACAAATTGGAAGGGATCGACTTACTTTAGAGATATTTTGCATTCTTAAACCCCTACTACTTGATAGTTGAGCTCATATCTATTGCTTAGGGTGATAATACTAAGGATCTGCATCTAGCGCAGTACCCTTAACTCAATCAAGTTCAATGCGCAGTCAATGAGTCAGAGTCGAAGTCCATTTAGTTACCTTCCTGAATGTTTAAAACTTCAGAAGTACTTAATGTTTAATCACAGTGCTGCATTCTTTTTAAAAGTACCTCGTGAAGGGAGAGGTTTGGAACTATGAGCTCATGCTTTTGGAGAAATCTACTGAAGTGCACACTTTCTGCAGCATTCACTTCATGATATTTTAAGAAGAGATGTACAACAAGCAAATGGTATCTATGAGCATTAAATAATGGGGGTTGGTGATGGTTAGAAATAACAATCTATTTGAACTTTCAGTTTTTTGGGTGAACTCATTGAGACTAAGATGGTTTGGGTGGGTAATGTTGTATGTTCTAGTATTCTCTATGATAGCAGCACTTAAATCCATAACGTGGATATTCTCTGGAAATATGTACAAACTTGGAGCAAGTATAGAGGGACCAACCATTGCTTTGGGAAATACCTGTGTTTTACCCCTTTCAAGTTGGTAATTATAAAATTGAATGAACTGGTAAATTTGCTAAACCAGATCGATATTGGGTCTGAGGAGAGATTAAGGTAGGCTGAAGAAGCATTGGAGGAGATGTGATTAGAGAGGACATGTCACTCATGCAACTTACAAAGGACATGACCGTAAATAGGAGGGTGTGGAGGTCAGGGATTAGGATAGGAGGTTAGTAGACAGTCTTGCGCGGTCTATTTTTTCTTACTAGTGTTATTGTTACTTTTCTTCTATTTTCTCTTTGTGATTTTCATTACCACTACTTGTCTCCTTTGTTTCGGTATTATATTATTATTGTTGTAACTGTTCTTTTCTCTAGTATTTTTAACATGGGTTTTTCGCTACTGTATTTCTTATTTTCAAATCTGCTTTGAATTGTTTTACTTGAGTCGAGGGTCTTCCGAAACCACCTCCCTGTCTTCACAACGCAAGGGTTTGTCAAATTATTAAAGCCAGAGCTCCACCTTATAAAAATAACTTATCAGTTTTAATTCTATTTCATTTCTTTGTCTTGCTCCACATGCATTTTCATGATCAATTTGCAAGTAATTACATTTTTCATTTGATTGGTTCTTTGAATTAGTTAATTTCTAGAGTACTTACTACTTGGTAAATGGTAATTACTTGTATTAAATGATCAAAACCATCAAATGAAGATGGTTTAAATACCTTTTTGATGCTTGTAAAGTTTCCAACTTAGCACTTCTTTTTGGGGGTGGCTATGTTTTTATTTGAATAGAACTGTTACTTGTCTTAGAAATGAAGATGTGAGGAATAATACAGTTGAGATTGTGAGACATCTTTAGATGTTGTATACAGTGCACAGGGTAGATCTATTTTTGGTTAATATGATACCATCTTTTCTTTTATGGGAGTTAATATGAGATCAATGTTTATTGCACAAAATATTCAGGGCAAAGCATTTGATTCCTAGGATTCCTTTCTTGCATTAAGCCACCAGAATTCTTCTCATGTTTCATTCTCAAAAAGTTCTCACGTCTATATATCTAGTTCCTTTCCCTGTCTTCTAGTTGATTTTATTGTCGTGTGACCTATATTACATGAATTAAGGTCATCCAGACTCATAAAGAGTTAAAAATTCCTTTTGGATTTCGTCAGGGAGTGCCTCAAGCTGATTCTTTGTAAGATGTCCTCATTTTGAAAAGATTTGGTTGTTCTAGTGATCCAGTTTAATTCTAATTGTCCTGGATGGAGGGCTAAATGTTGTGATATGGTGGTACTAGGTTTCTAATGATGACAAATGTAATCTAGGCTTACAAACTGTTCACTCCTTTTGTCTAGATTGTTCTTCCCTGATTACGAGGCTACGGGATTCTATGGCTTGTTTTTGAAAATAAATATTCCTCAATTAATTGCATGCTTTAAAGTCAACTACGATATGGTTGTTGAATTTTGTAATGGAACTGTTACGTTCAAAACTCCAACTTATAAGTTATAAAGTAGATGGGGTTTTAGAAGGTGGTTGGAAAAGTAGATATATTGTTTTGCCAATCGGTTGCGGTTTTTGGAAGAATATCTTGAAGGGATGGGATGGTTTTGCGGAAAGTATCTCAAATAAAGTTGGAAAAAGGAGGACCCCCCCCCCCCCCCACCCCTCCCTCTTGGTAAAAAAAATAAAAAGGACAATAACCGTAAGACATTTTAACACTGTATCTGGAAAACCAGGGACAAGCCAAAGACTCCCAGGAAAAAAATACCAACAGACCCCGCCGAACGCCAACCCATAATAGACACCATACTCCAGTACAGAACGACCCTAGCACTCACTAGATGCCTCCATCAAACGACCACGTTTAACACATACAACAAAAACTGATCCACGCACCACAGACCTACTACTACTCATCGTGCTGCGATCCGACGAAACAGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGATATGTTGCAGGTTAGTTGTTGTGTCGATAATTAATTATATAGTAATTACTAGTATATGTTGCCTTTTGTAAGTATTGCGGCGTTTGTGATTGGTAGTATGGAGATCAGGCCCGGCGTGGCAATTACCTATTACAGATGTTGTACGTAGCTGTGTTAATATATGGTGTTGTTGAGTGGTCTTGGATTTTTTGGTGTGTGTTGTGGCCCTCGACCCTAATTGTGGCTTGTTATGTAGGTGGTGTGGGATGGGTGGTGCTGTCCCCCCCCCCACCCCCAAAAAAAAAAAAAACCAAACCAAGCATAAAAAGAAGAGCATATGTGACATCGTGTATGCAAGACCATCTACTTATATCTGTGTAGCAAACATTGTTGACAAAGCATTTGATTATGAGGATACCCTTCTTACCTTTAGCCATCAGAATTTCTCTCTTTGCTATACATCTGAAATCTTTCTAATTTGTGATGTTACACAATTAAGGTCATTTAGTTATTTCGTATGTTGAAAGGATCCTTTTCATTTCATCAGGGAGTGTCTTAAGCTGATTCCACATCAGAAGTTTTCATTTGCAAAGATTTGGTTGTTGGCTGCCCAATTTGAGATTCGGCAGTTAAGACTCAAGGAGGCGCGACTTCTACTTGGAGAAGCAATTGGAAGGGCTCCTAAAGACAAGGTAGTCCCCTCTCCCCAGACATCTTTATGTTGGTTACTAATATTTCTGAGGGATATCCTTTGCATGTTACCTAACCTATACATGTCTTCTCTATTATAATACAGATATTTAAGAAGTACATAGAGATAGAGCTGCATTTTGGAA</genome_strand>
        <mrna_strand>ATTTGAAAAGCAGTATGGTGATAGAGAAGGTATTGAGGACGCTATAGTTGGAAAAAGGAGGTTTCAGTATGAGGATGAAGTGAGGAAGAATCCACGTAACTATGACACGTGGTTTGATTATATTCGGCTGGAAGAGAGCGTTGGAAATAAAGAGAGGATTAGAGAGGTTTATGAGAGAGCCATTGCTAATGTTCCTCCTGCTGAAGAGAAGCGATATTGGCAGCGATACATTTACTTATG..................................................................................................GATTAATTATGCATTATATGAAGAGCTTGATGCAGAAGACATGGAAAGAACCAGAGATGTCTACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTGTCTTAAGCTGATTCCACATCAGAAGTTTTCATTTGCAAAGATTTGGTTGTTGGCTGCCCAGTTTGAGATTCGGCAGTTAAGACTCAAGGAGGCGCGACTTCTACTTGGAGAAGCAATTGGAAGGGCTCCTAAAGACAAG........................................................................................................ATATTTAAGAAGTACATAGAGATAGAGCTGCATTTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704085" ref_strand="+" ref_description="SGN-E704085 [FA23BC07]">
      <seq>ggaggtttcagtatgaggatgaagtgaggaagaatccacgtaactatgacacgtggtttgattatattcggctggaagagagcgttggaaataaagagaggattagagaggtttatgagagagccattgctaatgttcctcctgctgaagagaagcgatattggcagcgatacatttacttatggattaattatgcattatatgaagagcttgatgcagaagacatggaaagaaccagagatgtctacagggagtgtcttaagctgattccacatcagaagttttcatttgcaaagatttggttgttggctgcccaatttgagattcggcagttaagactcaaggaggcgcgacttctacttggagaagcaattggaagggctcctaaagacaagatatttaagaagtacatagagatagagctgcattttggaaacatagatcgttgcagaaagctttatgagaagtacttggaatggtctccagaaaattgctatgcttggagcaaattcgccgagttggagaggtccttgtatgaaacggatagagccagggctatttttgagcttgcaattgaccaacctgctctggatatgccggagctattatggaaggcttacatcgactttgaaatttctgagggtgaatttgaaagaactagagcactatatgaaagacttcttaaccgcacaaaacacttgaaggtgtggataagttatgcgaagtttgaggcttcggctatggatccagaggctgaggaagatattgaactgaaaaagaactgcctacaacgcgccagagatgtttttgagagggcagtttcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10732" stop="18804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11032" g_stop="11215" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11216" i_stop="11313" i_length="98">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11314" g_stop="11379" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="250" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11380" i_stop="15814" i_length="4435">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15815" g_stop="15959" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="395" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15960" i_stop="16063" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16064" g_stop="16282" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="614" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16283" i_stop="18175" i_length="1893">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18176" g_stop="18362" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="801" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18363" i_stop="18477" i_length="115">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18478" g_stop="18504" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="828" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E704085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11032" e_stop="11215"/>
          <exon e_start="11314" e_stop="11379"/>
          <exon e_start="15815" e_stop="15959"/>
          <exon e_start="16064" e_stop="16282"/>
          <exon e_start="18176" e_stop="18362"/>
          <exon e_start="18478" e_stop="18504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTTTCAGTATGAGGATGAAGTGAGGAAGAATCCACGTAACTATGACACGTGGTTTGATTATATTCGGCTGGAAGAGAGCGTTGGAAATAAAGAGAGGATTAGAGAGGTTTATGAGAGAGCCATTGCTAATGTTCCTCCTGCTGAAGAGAAGCGATATTGGCAGCGATACATTTACTTATGGTAAATTTGACAACCTTTATTTTAATGTGATAATTTTAGTTCTATTTTGGATACCTTACCATGCATTTATGTTCATTGGCTGACTTTGCGCTTTTTAGGATTAATTATGCATTATATGAAGAGCTTGATGCAGAAGACATGGAAAGAACCAGAGATGTCTACAGGTAGGATATCGTTGTCTTGACTGAAATATCACTATGTAACTCATTTGGTTGATGAACTGTATTATTTATGCTTTATGTCGTTGTATCCAGATTGTCTCTTCCTTAATTAGGGTGCTCTGTCTCAAGGCCTAAGAAATTTTCTTGGTGCAGCCCAAACCCTTTTGAGCTCGATGCACCCATCATCTGCGATATTCCCAACTTTAAGATTCCAAGGGGTTCTCTTTCAGTTGTTTGGTTGCTAGTTTCAAAATTTAACCTTAATTCCATCAGGCTTTGAGTAGAATTGGGGTTTCTTGGTGTGGGTTTTATTGATTCTGCAGTTTTATATGTTTTTTTTTTTGAGAAGGTAACATTTTTGTTTATTGACAAGTCAGTACATGGTTCGCACTGAAATCATATTTACAGCAAATGCAAAAAGACATAACTGACTCTAATTCTAACAAGATCCTAGGATGTCTATAATTGAGTCAGTGTCCTCTGAAGTATATTTGTTTGCACCAGAAACAAAAAGTCTTAATGCAATTTAGTTTGACCATCTGTAGATCACAATTTTTGCTCTCAAAACATCTTGAATTCCTTTCCTTCCATATTGTCCACAAGATACAAGCCGGGACAATCCTCCATCTGTCTTTGTCAGCGGCTCCTGTTCCTGCTTCCTCTCAACTATATAGCAAATGAGTTATTTTGTTAGGCATGACCCAACTAATGCCCCTAAGGCTAACAAAAATTTTCCACGTGCTGAGTTGGTCTTTGTTGGGGTTACCTTCAGTGACTGGTTTTGTGATGGGAAGTCGAATTTCCCTAATTCTTGTGTGTTTGGTTCGACCGACAACTTCTCTTAGATGAAATCATTCTCCAGTGTTTGATCATTTTCCACCTAAGGGGGGCAGGAATCACTTTTCTTTATCAGTGCCCCTACTCATGCTACTTATCTTGCTTTAACCTAACATAGAAACATTATTTTCAATCTTTAGTATCCAAAATTATCATAAGAACATTATCCTCATATCCCACCCTCCACCTTGTATATTATATTTCACTTACTTTATACCCAACTAAACACTGGAGGATATGATCCATGAGATAATTTTCAAGGTGAAGGATTGTGTCCCTACATGTCAAATTCGCCCAAATCATATGAATATGTTGATATTTGTTTTTAATTAGTTTGAAGGCTGTCACTAGCTGTGTAGTCTGGAGTCTGGACAGAGTTTCTGCATCAACTTAATGAGGCCACCAGTAGTTTCAGTTCCCAAAATGAGTACAAATTGGAAGGGATCGACTTACTTTAGAGATATTTTGCATTCTTAAACCCCTACTACTTGATAGTTGAGCTCATATCTATTGCTTAGGGTGATAATACTAAGGATCTGCATCTAGCGCAGTACCCTTAACTCAATCAAGTTCAATGCGCAGTCAATGAGTCAGAGTCGAAGTCCATTTAGTTACCTTCCTGAATGTTTAAAACTTCAGAAGTACTTAATGTTTAATCACAGTGCTGCATTCTTTTTAAAAGTACCTCGTGAAGGGAGAGGTTTGGAACTATGAGCTCATGCTTTTGGAGAAATCTACTGAAGTGCACACTTTCTGCAGCATTCACTTCATGATATTTTAAGAAGAGATGTACAACAAGCAAATGGTATCTATGAGCATTAAATAATGGGGGTTGGTGATGGTTAGAAATAACAATCTATTTGAACTTTCAGTTTTTTGGGTGAACTCATTGAGACTAAGATGGTTTGGGTGGGTAATGTTGTATGTTCTAGTATTCTCTATGATAGCAGCACTTAAATCCATAACGTGGATATTCTCTGGAAATATGTACAAACTTGGAGCAAGTATAGAGGGACCAACCATTGCTTTGGGAAATACCTGTGTTTTACCCCTTTCAAGTTGGTAATTATAAAATTGAATGAACTGGTAAATTTGCTAAACCAGATCGATATTGGGTCTGAGGAGAGATTAAGGTAGGCTGAAGAAGCATTGGAGGAGATGTGATTAGAGAGGACATGTCACTCATGCAACTTACAAAGGACATGACCGTAAATAGGAGGGTGTGGAGGTCAGGGATTAGGATAGGAGGTTAGTAGACAGTCTTGCGCGGTCTATTTTTTCTTACTAGTGTTATTGTTACTTTTCTTCTATTTTCTCTTTGTGATTTTCATTACCACTACTTGTCTCCTTTGTTTCGGTATTATATTATTATTGTTGTAACTGTTCTTTTCTCTAGTATTTTTAACATGGGTTTTTCGCTACTGTATTTCTTATTTTCAAATCTGCTTTGAATTGTTTTACTTGAGTCGAGGGTCTTCCGAAACCACCTCCCTGTCTTCACAACGCAAGGGTTTGTCAAATTATTAAAGCCAGAGCTCCACCTTATAAAAATAACTTATCAGTTTTAATTCTATTTCATTTCTTTGTCTTGCTCCACATGCATTTTCATGATCAATTTGCAAGTAATTACATTTTTCATTTGATTGGTTCTTTGAATTAGTTAATTTCTAGAGTACTTACTACTTGGTAAATGGTAATTACTTGTATTAAATGATCAAAACCATCAAATGAAGATGGTTTAAATACCTTTTTGATGCTTGTAAAGTTTCCAACTTAGCACTTCTTTTTGGGGGTGGCTATGTTTTTATTTGAATAGAACTGTTACTTGTCTTAGAAATGAAGATGTGAGGAATAATACAGTTGAGATTGTGAGACATCTTTAGATGTTGTATACAGTGCACAGGGTAGATCTATTTTTGGTTAATATGATACCATCTTTTCTTTTATGGGAGTTAATATGAGATCAATGTTTATTGCACAAAATATTCAGGGCAAAGCATTTGATTCCTAGGATTCCTTTCTTGCATTAAGCCACCAGAATTCTTCTCATGTTTCATTCTCAAAAAGTTCTCACGTCTATATATCTAGTTCCTTTCCCTGTCTTCTAGTTGATTTTATTGTCGTGTGACCTATATTACATGAATTAAGGTCATCCAGACTCATAAAGAGTTAAAAATTCCTTTTGGATTTCGTCAGGGAGTGCCTCAAGCTGATTCTTTGTAAGATGTCCTCATTTTGAAAAGATTTGGTTGTTCTAGTGATCCAGTTTAATTCTAATTGTCCTGGATGGAGGGCTAAATGTTGTGATATGGTGGTACTAGGTTTCTAATGATGACAAATGTAATCTAGGCTTACAAACTGTTCACTCCTTTTGTCTAGATTGTTCTTCCCTGATTACGAGGCTACGGGATTCTATGGCTTGTTTTTGAAAATAAATATTCCTCAATTAATTGCATGCTTTAAAGTCAACTACGATATGGTTGTTGAATTTTGTAATGGAACTGTTACGTTCAAAACTCCAACTTATAAGTTATAAAGTAGATGGGGTTTTAGAAGGTGGTTGGAAAAGTAGATATATTGTTTTGCCAATCGGTTGCGGTTTTTGGAAGAATATCTTGAAGGGATGGGATGGTTTTGCGGAAAGTATCTCAAATAAAGTTGGAAAAAGGAGGACCCCCCCCCCCCCCCACCCCTCCCTCTTGGTAAAAAAAATAAAAAGGACAATAACCGTAAGACATTTTAACACTGTATCTGGAAAACCAGGGACAAGCCAAAGACTCCCAGGAAAAAAATACCAACAGACCCCGCCGAACGCCAACCCATAATAGACACCATACTCCAGTACAGAACGACCCTAGCACTCACTAGATGCCTCCATCAAACGACCACGTTTAACACATACAACAAAAACTGATCCACGCACCACAGACCTACTACTACTCATCGTGCTGCGATCCGACGAAACAGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGATATGTTGCAGGTTAGTTGTTGTGTCGATAATTAATTATATAGTAATTACTAGTATATGTTGCCTTTTGTAAGTATTGCGGCGTTTGTGATTGGTAGTATGGAGATCAGGCCCGGCGTGGCAATTACCTATTACAGATGTTGTACGTAGCTGTGTTAATATATGGTGTTGTTGAGTGGTCTTGGATTTTTTGGTGTGTGTTGTGGCCCTCGACCCTAATTGTGGCTTGTTATGTAGGTGGTGTGGGATGGGTGGTGCTGTCCCCCCCCCCACCCCCAAAAAAAAAAAAAACCAAACCAAGCATAAAAAGAAGAGCATATGTGACATCGTGTATGCAAGACCATCTACTTATATCTGTGTAGCAAACATTGTTGACAAAGCATTTGATTATGAGGATACCCTTCTTACCTTTAGCCATCAGAATTTCTCTCTTTGCTATACATCTGAAATCTTTCTAATTTGTGATGTTACACAATTAAGGTCATTTAGTTATTTCGTATGTTGAAAGGATCCTTTTCATTTCATCAGGGAGTGTCTTAAGCTGATTCCACATCAGAAGTTTTCATTTGCAAAGATTTGGTTGTTGGCTGCCCAATTTGAGATTCGGCAGTTAAGACTCAAGGAGGCGCGACTTCTACTTGGAGAAGCAATTGGAAGGGCTCCTAAAGACAAGGTAGTCCCCTCTCCCCAGACATCTTTATGTTGGTTACTAATATTTCTGAGGGATATCCTTTGCATGTTACCTAACCTATACATGTCTTCTCTATTATAATACAGATATTTAAGAAGTACATAGAGATAGAGCTGCATTTTGGAAACATAGATCGTTGCAGAAAGCTTTATGAGAAGTACTTGGAATGGTCTCCAGAAAATTGCTATGCTTGGAGCAAATTCGCCGAGTTGGAGAGGTCCTTGTATGAAACGGATAGAGCCAGGGCTATTTTTGAGCTTGCAATTGACCAACCTGCTCTGGATATGCCGGAGCTATTATGGAAGGTATTGTGTTGTTCTACTAGCTGATATGCTTGTGTTTGGTTAAAAGTTATTTTAGAATGTAATTGTCCCCTAGCAACTCATGTTCTTGCTTAGTGCTGTTGCTGGGACTCCAGGCAGTTCTATGCTTGCATTTTTCTGTAGCTCATTGCATTAGGATGACTGTTTTCAGCATAGTTAAGCAACTTGATTTTGGTAGAACCCAGAAAAAGGACCACCTCAATAGTCACTTATTAACTGGAGGTTAGTAGGTCTCACCAGCAATGTTCGAAAGCATTATAAGGAAAGATTTAGCACCATTTTAACATTGTTTTATGTAGGTCAAGTCCATCTAGATTCCTTATGTACTAATAAGCCGGTCAAGGACATCTGTTCCTAATTACAGGAGAAGTTTTACCATTGAGATCCAATTGAATAATCCTGTATGCCTTTTTTTTATGAACTGACTGTGTTGTATGTTTTCCCGACTTAAAGAGAAATTTCTTTCGATTCCCACTGTCCATACCCATGGCTATCATTTTGAAAATACCAAACTCCATGGTCTTCATAAGTGTCATCAATATCTGCAAGGTACATGATTTGAAGATTTCCAGGAAGCTGGTAATAAAAGAATAGTTGTGAAGGACCCCAAGACCTAGTTCAAGTGACAGTTTGAGGGACTTGTGGCTTGCATCAAAGATTTGAGCCATGCGCCATGAGAACTAAGCCTGGTATTGAAGTGGAGAAGGGTAGTGGGGAAGACCCACTATCCCTAGTTTCTAAGGTTGCAGCGTGTCCGAAGGATAGGCCTCTGACAGTTTTTTCGGTCAAAAAAAAATTAAAAGAGTACTTGTGGAAGGAATGTCTGCACTAGGGAAAACAATTAACTAGTTTGAGCATAGGTTTACCCTTTTTCTCAGGATGTTGATAAAAAAGGGATAAGAACTGCACTGGGCATGAAAAGAATTCAAAGCTTTCGGGAAAATGCTCATCATGCTCTTTTATGTTATGCATTTGGAGCAGTGTTATCAAAAACGAAAAGCGCAAAAAGGCTCTAGGTCCGTGGGGCTTAAAGCGCAAATAAAGCGTGAGCTTTGATGAAAAAAGGCGCAAAGGGAGAAAAAAATACAAATATATATGTTTAGTCCAAGTCTAACAATTATAAACATGAATGACAAATATATGACCAAAAAATTGAAAAAAAAATCATGATAAAGTGAAATATCGATTGTTTAGTGTCACTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAAAACCTTATGACGACACTGAAGCGCACATAAAGCGAGGCGAAGCACTCAACACGTTTTGAGCCTCGCTTCAGGGCTTAAGCGCGCTTAAAGCGAGCCTTTGATAATACTTGATTTGGAGACTAACGGACAGTCACCTCTATACTTTAAGCAAGGAATTCAGCCTACAAAAGTTGAAAACTTGGGTCTGTGGATTCATTATTTGTCTTGCGCTCTACTTGTTCCTTGTCGTTTAATCATTGAATTCTCAGGCCGCCTTTCTGGGTATTCCTCAAAACCATTTTTGTACCTTTAGTGTGCTGCTCCCTTATATTAACAAAAGACTAGTATTCTCACCCAGATATTTTGGTGTGGTCATGGACTGTCTAGTTCAGTAATCATCATTGCTTTCAAGTCTATAAGACAACTTAGTGGGAAAAATTAAATTCGCATAGTGGTGAAGCTTCCCAGAAGCATTCATGTTCAGAGAACTATCTTGTAGAATGGGAAGAAATGGTCTCTCCTGTTATGTTGAAGGCCTTTTTTCATTTTAATTTTTCTGCTCTTGGTTAAGGGTGAGACAGATCATGTGCAATTTAGTTGAGGTATATTCAATTACATACATTCTAACAAGCTTCTGTTATGAATTTCTGATAGGCTTACATCGACTTTGAAATTTCTGAGGGTGAATTTGAAAGAACTAGAGCACTATATGAAAGACTTCTTAACCGCACAAAACACTTGAAGGTGTGGATAAGTTATGCGAAGTTTGAGGCTTCGGCTATGGATCCAGAGGCTGAGGAAGATATTGAACTGAAAAAGAACTGCCTACAACGCGCCAGAGGTGAGAAAATCATATGATTACTAGATTCTCCAATATAACATACCCAGTGACCATTAGGTTCTCCATTAATTTTGAATTCTGTGTTGATAATAATTTCTCCTTTTTTTTGATATAGATGTTTTTGAGAGGGCAGTTTCTTACT</genome_strand>
        <mrna_strand>GGAGGTTTCAGTATGAGGATGAAGTGAGGAAGAATCCACGTAACTATGACACGTGGTTTGATTATATTCGGCTGGAAGAGAGCGTTGGAAATAAAGAGAGGATTAGAGAGGTTTATGAGAGAGCCATTGCTAATGTTCCTCCTGCTGAAGAGAAGCGATATTGGCAGCGATACATTTACTTATG..................................................................................................GATTAATTATGCATTATATGAAGAGCTTGATGCAGAAGACATGGAAAGAACCAGAGATGTCTACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTGTCTTAAGCTGATTCCACATCAGAAGTTTTCATTTGCAAAGATTTGGTTGTTGGCTGCCCAATTTGAGATTCGGCAGTTAAGACTCAAGGAGGCGCGACTTCTACTTGGAGAAGCAATTGGAAGGGCTCCTAAAGACAAG........................................................................................................ATATTTAAGAAGTACATAGAGATAGAGCTGCATTTTGGAAACATAGATCGTTGCAGAAAGCTTTATGAGAAGTACTTGGAATGGTCTCCAGAAAATTGCTATGCTTGGAGCAAATTCGCCGAGTTGGAGAGGTCCTTGTATGAAACGGATAGAGCCAGGGCTATTTTTGAGCTTGCAATTGACCAACCTGCTCTGGATATGCCGGAGCTATTATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACATCGACTTTGAAATTTCTGAGGGTGAATTTGAAAGAACTAGAGCACTATATGAAAGACTTCTTAACCGCACAAAACACTTGAAGGTGTGGATAAGTTATGCGAAGTTTGAGGCTTCGGCTATGGATCCAGAGGCTGAGGAAGATATTGAACTGAAAAAGAACTGCCTACAACGCGCCAGAG...................................................................................................................ATGTTTTTGAGAGGGCAGTTTCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549336" ref_strand="+" ref_description="SGN-E549336 [TUS-69-H17](-)">
      <seq>gagccagggctatttttgagcttgcaattgaccaacctgctctggatatgccggagctattatggaaggcttacatcgactttgaaatctctgagggtgaatttgaaagaactagagcactatatgaaagacttcttaaccgcacaaaacacttgaaggtgtggataagttatgcgaagtttgaggcttcggctatggatccagaggctgaggaagatattgaattgaaaaagaactgtctacaacgcgccagagatgtttttgagagggcagtttcttacttcagaaattcggcacccgaactaaaggaagaaagagcaatgcttctcgaagagtggctaaatatggaaagtggttttgctgagcttggggatgtcagtttagtccgtgctaaactaccaaagaaactcaagaagagaaggcaaatagacatggaggatggtccagcagcttatgaggagtacatagactatcttttcccagaggaaacacaaaccacaaatctcaaaatattggaagctgcttacaaatggaagaagcagcgagttgcatctgaggaggattagccaagctttgttagcttccatttgattttgtattcttgttttcccctttctgccttgtattaaatgttgaaagaatgcttgtaattgacattatatctcttatctcaacaagtcttatctggcattgtttttgcactcaaaaaggggcatggcacaggaggcctagtagaatgttatgtagtgacacgganataatccaattttttttatgttcgctctcatggcaacganntatattgtaaattatgttagtgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="15915" stop="19710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16215" g_stop="16282" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16283" i_stop="18175" i_length="1893">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18176" g_stop="18362" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="255" r_length="187" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18363" i_stop="18477" i_length="115">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18478" g_stop="18673" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="451" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18674" i_stop="19047" i_length="374">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19048" g_stop="19368" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="770" r_length="319" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="822" polyA_stop="834"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E549336" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16215" e_stop="16282"/>
          <exon e_start="18176" e_stop="18362"/>
          <exon e_start="18478" e_stop="18673"/>
          <exon e_start="19048" e_stop="19368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCAGGGCTATTTTTGAGCTTGCAATTGACCAACCTGCTCTGGATATGCCGGAGCTATTATGGAAGGTATTGTGTTGTTCTACTAGCTGATATGCTTGTGTTTGGTTAAAAGTTATTTTAGAATGTAATTGTCCCCTAGCAACTCATGTTCTTGCTTAGTGCTGTTGCTGGGACTCCAGGCAGTTCTATGCTTGCATTTTTCTGTAGCTCATTGCATTAGGATGACTGTTTTCAGCATAGTTAAGCAACTTGATTTTGGTAGAACCCAGAAAAAGGACCACCTCAATAGTCACTTATTAACTGGAGGTTAGTAGGTCTCACCAGCAATGTTCGAAAGCATTATAAGGAAAGATTTAGCACCATTTTAACATTGTTTTATGTAGGTCAAGTCCATCTAGATTCCTTATGTACTAATAAGCCGGTCAAGGACATCTGTTCCTAATTACAGGAGAAGTTTTACCATTGAGATCCAATTGAATAATCCTGTATGCCTTTTTTTTATGAACTGACTGTGTTGTATGTTTTCCCGACTTAAAGAGAAATTTCTTTCGATTCCCACTGTCCATACCCATGGCTATCATTTTGAAAATACCAAACTCCATGGTCTTCATAAGTGTCATCAATATCTGCAAGGTACATGATTTGAAGATTTCCAGGAAGCTGGTAATAAAAGAATAGTTGTGAAGGACCCCAAGACCTAGTTCAAGTGACAGTTTGAGGGACTTGTGGCTTGCATCAAAGATTTGAGCCATGCGCCATGAGAACTAAGCCTGGTATTGAAGTGGAGAAGGGTAGTGGGGAAGACCCACTATCCCTAGTTTCTAAGGTTGCAGCGTGTCCGAAGGATAGGCCTCTGACAGTTTTTTCGGTCAAAAAAAAATTAAAAGAGTACTTGTGGAAGGAATGTCTGCACTAGGGAAAACAATTAACTAGTTTGAGCATAGGTTTACCCTTTTTCTCAGGATGTTGATAAAAAAGGGATAAGAACTGCACTGGGCATGAAAAGAATTCAAAGCTTTCGGGAAAATGCTCATCATGCTCTTTTATGTTATGCATTTGGAGCAGTGTTATCAAAAACGAAAAGCGCAAAAAGGCTCTAGGTCCGTGGGGCTTAAAGCGCAAATAAAGCGTGAGCTTTGATGAAAAAAGGCGCAAAGGGAGAAAAAAATACAAATATATATGTTTAGTCCAAGTCTAACAATTATAAACATGAATGACAAATATATGACCAAAAAATTGAAAAAAAAATCATGATAAAGTGAAATATCGATTGTTTAGTGTCACTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAAAACCTTATGACGACACTGAAGCGCACATAAAGCGAGGCGAAGCACTCAACACGTTTTGAGCCTCGCTTCAGGGCTTAAGCGCGCTTAAAGCGAGCCTTTGATAATACTTGATTTGGAGACTAACGGACAGTCACCTCTATACTTTAAGCAAGGAATTCAGCCTACAAAAGTTGAAAACTTGGGTCTGTGGATTCATTATTTGTCTTGCGCTCTACTTGTTCCTTGTCGTTTAATCATTGAATTCTCAGGCCGCCTTTCTGGGTATTCCTCAAAACCATTTTTGTACCTTTAGTGTGCTGCTCCCTTATATTAACAAAAGACTAGTATTCTCACCCAGATATTTTGGTGTGGTCATGGACTGTCTAGTTCAGTAATCATCATTGCTTTCAAGTCTATAAGACAACTTAGTGGGAAAAATTAAATTCGCATAGTGGTGAAGCTTCCCAGAAGCATTCATGTTCAGAGAACTATCTTGTAGAATGGGAAGAAATGGTCTCTCCTGTTATGTTGAAGGCCTTTTTTCATTTTAATTTTTCTGCTCTTGGTTAAGGGTGAGACAGATCATGTGCAATTTAGTTGAGGTATATTCAATTACATACATTCTAACAAGCTTCTGTTATGAATTTCTGATAGGCTTACATCGACTTTGAAATTTCTGAGGGTGAATTTGAAAGAACTAGAGCACTATATGAAAGACTTCTTAACCGCACAAAACACTTGAAGGTGTGGATAAGTTATGCGAAGTTTGAGGCTTCGGCTATGGATCCAGAGGCTGAGGAAGATATTGAACTGAAAAAGAACTGCCTACAACGCGCCAGAGGTGAGAAAATCATATGATTACTAGATTCTCCAATATAACATACCCAGTGACCATTAGGTTCTCCATTAATTTTGAATTCTGTGTTGATAATAATTTCTCCTTTTTTTTGATATAGATGTTTTTGAGAGGGCAGTTTCTTACTTCAGAAATTCGGCACCCGAACTAAAGGAAGAAAGAGCAATGCTTCTCGAAGAGTGGCTAAATATGGAAAGTGGTTTTGCTGAGCTTGGGGATGTCAGTTTAGTCCGTGCTAAACTACCAAAGAAACTCAAGAAGAGAAGGCAAATAGACATGGAGGATGGTCCAGCAGCGTAAGTTTTCTTTTACTATGTATTTGCATATTGATCATGTTCTTTTTTATCTTTTTATTGTTTGTGCCAAAAAGAAAGTTGGGGACAAAAGATTTTGTTGGGAGGTTGGTTGAGTCCCTACGTCTTCTCATTATTGAAAAAATGAGTTCTGGTTAAATTGTTTGCTTATATGGCAGTGCTTAGTTTAAATTTAGTCTGTATTCCTTTATGTAACTTGATTAGGTGTTTCGCCACTCCCAATTTGTCTGTACACGACATCATGAATTAGCGAATTGCTACGAGGAATAACTTTCTTTTGTATCGTAAGGTTGTTCACCTGTTGCTTGGACGTTTGCTGACCCCTTTTGACATCATATACTTTCCAATTTTTGCAGTTATGAAGAGTACATAGACTATCTTTTCCCAGAGGAAACACAGACCACAAATCTCAAAATATTGGAAGCTGCTTACAAATGGAAGAAGCAGCGAGTTGCATCTGAGGAGGATTAGCCAAGCTTTGTTAGCTTCCATTTGGTTTTGGTATTCTTGTTTTCTCCTTTCTGCCTTGTATCAAAAGTTGAAAGAATGCTTGTGCAATTGACATCATATCTTTTATCTCAACAAGTCTTATCTGGCATTGTTTTTGCACTCAAAAAGGGGCATGGCACAGGAGGCCTAGTAGAATGTTGTGTAGTGACACGGA-ATAATCCAATTTT</genome_strand>
        <mrna_strand>GAGCCAGGGCTATTTTTGAGCTTGCAATTGACCAACCTGCTCTGGATATGCCGGAGCTATTATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACATCGACTTTGAAATCTCTGAGGGTGAATTTGAAAGAACTAGAGCACTATATGAAAGACTTCTTAACCGCACAAAACACTTGAAGGTGTGGATAAGTTATGCGAAGTTTGAGGCTTCGGCTATGGATCCAGAGGCTGAGGAAGATATTGAATTGAAAAAGAACTGTCTACAACGCGCCAGAG...................................................................................................................ATGTTTTTGAGAGGGCAGTTTCTTACTTCAGAAATTCGGCACCCGAACTAAAGGAAGAAAGAGCAATGCTTCTCGAAGAGTGGCTAAATATGGAAAGTGGTTTTGCTGAGCTTGGGGATGTCAGTTTAGTCCGTGCTAAACTACCAAAGAAACTCAAGAAGAGAAGGCAAATAGACATGGAGGATGGTCCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................TTATGAGGAGTACATAGACTATCTTTTCCCAGAGGAAACACAAACCACAAATCTCAAAATATTGGAAGCTGCTTACAAATGGAAGAAGCAGCGAGTTGCATCTGAGGAGGATTAGCCAAGCTTTGTTAGCTTCCATTTGATTTT-GTATTCTTGTTTTCCCCTTTCTGCCTTGTATTAAATGTTGAAAGAATGCTTGT--AATTGACATTATATCTCTTATCTCAACAAGTCTTATCTGGCATTGTTTTTGCACTCAAAAAGGGGCATGGCACAGGAGGCCTAGTAGAATGTTATGTAGTGACACGGANATAATCCAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351399" ref_strand="+" ref_description="SGN-E351399 [cTOS-12-O4]">
      <seq>cgaactaaaggaagaaagagcaatgcttctcgaagagtggctaaatatggaaagtggttttgctgagcttggggatgtcagtttagtccgtgctaaactaccaaagaaactcaagaagagaaggcaaatagacatggaggatggtccagcagcttatgaagagtacatagactatcttttcccagaggaaacacagaccacaaatctcaaaatattggaagctgcttacaaatggaagaagcagcgagttgcatctgaggaggattagccaagctttgttagcttccatttggttttggtattcttgttttctcctttctgccttgtatcaaaagttgaaagaatgcttgtgcaattgacatcatatcttttatctcaacaagtcttatctggcattgtttttgcactcaaaaaggggcatggcacaggaggcctagtagaatgttgtgtagtgacacggaataatccaattttattttattttggcaacgatatattgtaaattatgttagtgtacttcaaccagtttgaacatagttcatctccccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="18221" stop="19745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18521" g_stop="18673" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18674" i_stop="19047" i_length="374">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19048" g_stop="19445" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="552" r_length="399" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E351399" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18521" e_stop="18673"/>
          <exon e_start="19048" e_stop="19445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACTAAAGGAAGAAAGAGCAATGCTTCTCGAAGAGTGGCTAAATATGGAAAGTGGTTTTGCTGAGCTTGGGGATGTCAGTTTAGTCCGTGCTAAACTACCAAAGAAACTCAAGAAGAGAAGGCAAATAGACATGGAGGATGGTCCAGCAGCGTAAGTTTTCTTTTACTATGTATTTGCATATTGATCATGTTCTTTTTTATCTTTTTATTGTTTGTGCCAAAAAGAAAGTTGGGGACAAAAGATTTTGTTGGGAGGTTGGTTGAGTCCCTACGTCTTCTCATTATTGAAAAAATGAGTTCTGGTTAAATTGTTTGCTTATATGGCAGTGCTTAGTTTAAATTTAGTCTGTATTCCTTTATGTAACTTGATTAGGTGTTTCGCCACTCCCAATTTGTCTGTACACGACATCATGAATTAGCGAATTGCTACGAGGAATAACTTTCTTTTGTATCGTAAGGTTGTTCACCTGTTGCTTGGACGTTTGCTGACCCCTTTTGACATCATATACTTTCCAATTTTTGCAGTTATGAAGAGTACATAGACTATCTTTTCCCAGAGGAAACACAGACCACAAATCTCAAAATATTGGAAGCTGCTTACAAATGGAAGAAGCAGCGAGTTGCATCTGAGGAGGATTAGCCAAGCTTTGTTAGCTTCCATTTGGTTTTGGTATTCTTGTTTTCTCCTTTCTGCCTTGTATCAAAAGTTGAAAGAATGCTTGTGCAATTGACATCATATCTTTTATCTCAACAAGTCTTATCTGGCATTGTTTTTGCACTCAAAAAGGGGCATGGCACAGGAGGCCTAGTAGAATGTTGTGTAGTGACACGGAATAATCCAATTTTATTTTATTTTGGCAACGATATATTGTAAATTATGTTAGTGTACTTCAACCAGTTTGAACATAGTTCATCT-CCCTTGA</genome_strand>
        <mrna_strand>CGAACTAAAGGAAGAAAGAGCAATGCTTCTCGAAGAGTGGCTAAATATGGAAAGTGGTTTTGCTGAGCTTGGGGATGTCAGTTTAGTCCGTGCTAAACTACCAAAGAAACTCAAGAAGAGAAGGCAAATAGACATGGAGGATGGTCCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................TTATGAAGAGTACATAGACTATCTTTTCCCAGAGGAAACACAGACCACAAATCTCAAAATATTGGAAGCTGCTTACAAATGGAAGAAGCAGCGAGTTGCATCTGAGGAGGATTAGCCAAGCTTTGTTAGCTTCCATTTGGTTTTGGTATTCTTGTTTTCTCCTTTCTGCCTTGTATCAAAAGTTGAAAGAATGCTTGTGCAATTGACATCATATCTTTTATCTCAACAAGTCTTATCTGGCATTGTTTTTGCACTCAAAAAGGGGCATGGCACAGGAGGCCTAGTAGAATGTTGTGTAGTGACACGGAATAATCCAATTTTATTTTATTTTGGCAACGATATATTGTAAATTATGTTAGTGTACTTCAACCAGTTTGAACATAGTTCATCTCCCCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351223" ref_strand="+" ref_description="SGN-E351223 [cTOS-6-M4]">
      <seq>cgaactaaaggaagaaagagcaatgcttctcgaagagtggctaaatatggaaagtggttttgctgagcttggggatgtcagtttagtccgtgctaaactaccaaagaaactcaagaagagaaggcaaatagacatggaggatggtccagcagcttatgaagagtacatagactatcttttcccagaggaaacacagaccacaaatctcaaaatattggaagctgcttacaaatggaagaagcagcgagttgcatctgaggaggattagccaagctttgttagcttccatttggttttggtattcttgttttctcctttctgccttgtatcaaaagttgaaagaatgcttgtgcaattgacatcatatcttttatctcaacaagtcttatctggcattgtttttgcactcaaaaaggggcatggcacaggaggcctagtagaatgttgtgtagtgacacggaataatccaattttattttattttggcaacgatatattgtaaattatgttagtgtacttcaaccagtttgaacatagttcatctcccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="18221" stop="19745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18521" g_stop="18673" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18674" i_stop="19047" i_length="374">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19048" g_stop="19445" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="551" r_length="398" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E351223" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18521" e_stop="18673"/>
          <exon e_start="19048" e_stop="19445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACTAAAGGAAGAAAGAGCAATGCTTCTCGAAGAGTGGCTAAATATGGAAAGTGGTTTTGCTGAGCTTGGGGATGTCAGTTTAGTCCGTGCTAAACTACCAAAGAAACTCAAGAAGAGAAGGCAAATAGACATGGAGGATGGTCCAGCAGCGTAAGTTTTCTTTTACTATGTATTTGCATATTGATCATGTTCTTTTTTATCTTTTTATTGTTTGTGCCAAAAAGAAAGTTGGGGACAAAAGATTTTGTTGGGAGGTTGGTTGAGTCCCTACGTCTTCTCATTATTGAAAAAATGAGTTCTGGTTAAATTGTTTGCTTATATGGCAGTGCTTAGTTTAAATTTAGTCTGTATTCCTTTATGTAACTTGATTAGGTGTTTCGCCACTCCCAATTTGTCTGTACACGACATCATGAATTAGCGAATTGCTACGAGGAATAACTTTCTTTTGTATCGTAAGGTTGTTCACCTGTTGCTTGGACGTTTGCTGACCCCTTTTGACATCATATACTTTCCAATTTTTGCAGTTATGAAGAGTACATAGACTATCTTTTCCCAGAGGAAACACAGACCACAAATCTCAAAATATTGGAAGCTGCTTACAAATGGAAGAAGCAGCGAGTTGCATCTGAGGAGGATTAGCCAAGCTTTGTTAGCTTCCATTTGGTTTTGGTATTCTTGTTTTCTCCTTTCTGCCTTGTATCAAAAGTTGAAAGAATGCTTGTGCAATTGACATCATATCTTTTATCTCAACAAGTCTTATCTGGCATTGTTTTTGCACTCAAAAAGGGGCATGGCACAGGAGGCCTAGTAGAATGTTGTGTAGTGACACGGAATAATCCAATTTTATTTTATTTTGGCAACGATATATTGTAAATTATGTTAGTGTACTTCAACCAGTTTGAACATAGTTCATCTCCCTTGA</genome_strand>
        <mrna_strand>CGAACTAAAGGAAGAAAGAGCAATGCTTCTCGAAGAGTGGCTAAATATGGAAAGTGGTTTTGCTGAGCTTGGGGATGTCAGTTTAGTCCGTGCTAAACTACCAAAGAAACTCAAGAAGAGAAGGCAAATAGACATGGAGGATGGTCCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................TTATGAAGAGTACATAGACTATCTTTTCCCAGAGGAAACACAGACCACAAATCTCAAAATATTGGAAGCTGCTTACAAATGGAAGAAGCAGCGAGTTGCATCTGAGGAGGATTAGCCAAGCTTTGTTAGCTTCCATTTGGTTTTGGTATTCTTGTTTTCTCCTTTCTGCCTTGTATCAAAAGTTGAAAGAATGCTTGTGCAATTGACATCATATCTTTTATCTCAACAAGTCTTATCTGGCATTGTTTTTGCACTCAAAAAGGGGCATGGCACAGGAGGCCTAGTAGAATGTTGTGTAGTGACACGGAATAATCCAATTTTATTTTATTTTGGCAACGATATATTGTAAATTATGTTAGTGTACTTCAACCAGTTTGAACATAGTTCATCTCCCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309429" ref_strand="+" ref_description="SGN-E309429 [cLEY-22-P18]">
      <seq>cccagaggaaacacagaccacaaatctcaaaatattggaagctgcttacaaatggaagaagcagcgagttgcatctgaggaggattagccaagctttgttagcttccatttggttttggtattcttgttttctcctttctgccttgtatcaaaagttgaaagaatgcttgtgcaattgacatcatatcttttatctcaacaagtcttatctggcattgtttttgcactcaaaaaggggcatggcacaggaggcctagtagaatgttgtgtagtgacacggaataatccaattttattttattttggcaacgatatattgtaaattatgttagtgtacttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="18775" stop="19716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19075" g_stop="19419" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="355"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E309429" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19075" e_stop="19419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGAGGAAACACAGACCACAAATCTCAAAATATTGGAAGCTGCTTACAAATGGAAGAAGCAGCGAGTTGCATCTGAGGAGGATTAGCCAAGCTTTGTTAGCTTCCATTTGGTTTTGGTATTCTTGTTTTCTCCTTTCTGCCTTGTATCAAAAGTTGAAAGAATGCTTGTGCAATTGACATCATATCTTTTATCTCAACAAGTCTTATCTGGCATTGTTTTTGCACTCAAAAAGGGGCATGGCACAGGAGGCCTAGTAGAATGTTGTGTAGTGACACGGAATAATCCAATTTTATTTTATTTTGGCAACGATATATTGTAAATTATGTTAGTGTACTTCAACCA</genome_strand>
        <mrna_strand>CCCAGAGGAAACACAGACCACAAATCTCAAAATATTGGAAGCTGCTTACAAATGGAAGAAGCAGCGAGTTGCATCTGAGGAGGATTAGCCAAGCTTTGTTAGCTTCCATTTGGTTTTGGTATTCTTGTTTTCTCCTTTCTGCCTTGTATCAAAAGTTGAAAGAATGCTTGTGCAATTGACATCATATCTTTTATCTCAACAAGTCTTATCTGGCATTGTTTTTGCACTCAAAAAGGGGCATGGCACAGGAGGCCTAGTAGAATGTTGTGTAGTGACACGGAATAATCCAATTTTATTTTATTTTGGCAACGATATATTGTAAATTATGTTAGTGTACTTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243263" ref_strand="+" ref_description="SGN-E243263 [cLEE-2-N16]">
      <seq>agtcttcaacctgtttgtgggcaagaagcacttgatctcctaaattgcaccactgaatcgccttacgataaggagaaatgccaaaagttgcttgaaactttgcgccaatgcgtaatcaacaagaaagtaaagaagttctcgctttctgatccgaggatagggaaaccagaagggagcaatgagaaaagaagttaatccttgtgaagtcataaggaatgtcttctgtgttgtgaatttgctcctgattcttcttattcggcggaataagcatttaccatcttattctaacatgtacaattgtcctaaacatctcatttctgtttcctacacttgttagttttctctttttcagctattacttcgaaatcatgaaaattttacatggattatgtgaaatctattaagacatatatgtggagtataacactaaatcaggttagtttaccatgtcttgtattcatgacttgtatgagtattttgattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="27103" stop="22855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26803" g_stop="26681" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26680" i_stop="23517" i_length="3164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23516" g_stop="23155" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="485" r_length="362" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E243263" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26803" e_stop="26681"/>
          <exon e_start="23516" e_stop="23155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTTCAACCTGTTTGTGGGCAAGAAGCACTTGATCTCCTAAATTGCACCACTGAATCGCCTTACGATAAGGAGAAATGCCAAAAGTTGCTTGAAACTTTGCGCCAATGCGTAATCAACAAGGTAATCATCTAATTTTTTTTTCTAGTGTGTTTTTGGTAGCTGTTGAATTTTTGCTCCATTTGAGTTTTGATTTTTGCATTTTTGCACCTTTATGTGGTTGATAACTAGATAGTCTAGGTAGATGAACTATGATTAAGGGTTTAGAGAAAAAAAAAGCTTTTTTTCCTGAACCAGATTGAGTTAGAAGTACTCTAGGGACGGAGGCAGAGCCAACGGCGAATCTGGGATTTGTAGAACATGACTCTCAAAAAGAAAGGGAACTATGCATTGAGTGTGAATTGATTCGTAGTCCTCTGGGTACATAAATTAACATAATTAGCCGTTTTTGTAGCACTGGGAGTCAACGGATAATATTGTACCACTTTTTAGAAAATATATACATAAAGTACCTGGTTTACAGAGAGACTACGGTTCAGACCTCATTTTTGAGGCAATAAATTTGCCCCTGGTGTGTGTTTGTGTGTTGGTGGTGGGGGGCGGAGGGGGGCTAGAATCAAAGAATTGGAATAACAACCTTAGGACCTAAGGTGACACTATGTGAGTTTAAGCCTTTGGTAGGTAGATTTACCCAATACTTAGCATGTATACATTGACTAGACCTAGGTGCAAGCTGATTTAGGATGCGTCAAATTTTAGAAATGCGGAGGCTAGAGGATTTCTTGTTTTCTACAATCTTTAGATTAGATAAACTACACGTTAAGTGAAACAAAATTAATTTTTTGTTCTAGAGTTGCAGGCTGTATGATGTTAACTTCTTGATCATGGAATCAGGGGAAAACAGAATCTTTAAGAAGTGACTAACTAGTCTTGTTCGTTTATTATAAATGTTTAAGAAAATAAAATGAGTTTTGAGGAATAGTTTCGCGGAAGTGATAATTGAATATTCTTGTTCATTGTAAATGTTTAAGAAAACAAAATGAGTTTTGAGGAATTGTTTCGCGGAAGTGATAAATATTCTTGTTGACGTGATAGAACCATGTTGTTTCCAGAGGTGCTTATGATAGATGAGATCGTGGTAGATTCACCAATTGTTATGAGAAACTTTAATAATAACAATGGTGTCAGAGTCTGCTTACAAGCACCTCGATTATCCCACTAGGTATTTGCCACCTCCCACCTGCCCCCCAAAACTAAGGCATAACGGAAGATGTCACCTAATGTGTTCTTTTTTCGCTGAGTTATGAGTAATTTTAGAAACTACCTGAATGTTAAGTTCAAACTTCATGTCCAATGGTTAATTTCTTTATATGCTTGCTTTCCCTTCAAGATCATTGGAAGGTGAGGAAATGATTTACTCTTGATTCATGAGAAGCTAATTAACTCTCTTGTTTCACTCTTTTAGAGTAGAAAAGAAATAGAAAGCTAAAAACAATCTTGAGCTTGTTATTCTGTTGCGCTTGCAAATATCAAGCAGATTTGTAACCTTTTATTTGCTAATTTACTGATGTCATGTTGATTAGACAATGAATAGCTAGGATCTTTTCAGTGGGGGGCAGAAAAAAGAATAGGTGATGCCACTGTTAGGCCAATATTGTATTTCTGTAATTAAAGCATGTTATTTTGAAGGTAAAGCATGATAATATCAGACAGCGTTATGTTAATATCTAAGTGGACACTTAGATGAGACAATGGGCATACAAATGTTGAAAGCTAGTGCAAAAGGTTGGGTCTGGTTTCAGAAACCTTGTGCAGAATAGACTGATATAGACTTTATAAAGGTTCAATCGCAGCATGATAGAAATGTAAGAAAACAGATCACTTCACAAAATCAAAATCAATACTGTTTTGCCACCAACACCTTTTCTATTTCCTGTTCTCATGTTCTGATCTTTTTAATTTTCTTTTTTTGAGAAGTCTCATATTCTGAAATTTCATCAATAAATTTGTCAGTGTAAACTGTTCTGTACTTCTAATAGATCATGTTTGACAGATGGAGCAGTTGCTCTGTACTTAATAAGATACAAGGTTGGGAGTGCCTACGAAACATTTAACGCATTATTCCTTGTTATATATGTACTCTAACAAGTAATAATGATATCTCAGTCCTAAACAAGTTGGGGTTGGCTATATGAATCCTCACTGACCATGTTTTTAGTTTCAGCTCAAATCGTATCGTCATACCAATAAATATATATGTGCAAATTGTATAAAATATATCCATATAAATAGAAGTAATAGAAAATAAAAGGTCTCTATATATTTGTAGACGTATAAATCTGTGATAAGGTTAACATACACATATTGAAAAAATAGTTTCAAGATCAACTTATTAACAAAACTAAAACCTATTGTCAAGTAGTATATGTCACCTATTTGGATTTTTTTGTTTCACTGCGCCCAGGTCTTCCACAACAACTTCTTTTCATGTGATTTTAGGTATGCCTCGTCTCCTTTTAACAATTTCACTCGCAGTAGTTTCACACCTATAGAGCGGTGCATTTATAAGTCGATGTGTGACAACTTAACAATCTCTGACCTTCCCTCATTTTATCCTCAATCTGTGTTAGTTGCACCTTCCAGCGATTGTGGCCTTTATAAATCTTATCTGTTCTTGTTTGACCGCACGTCTATCTTAGCATCCGCATCTCTGCGACACTCCCTTGTGGATATGTTGGACTTTATCGGCTCAACATTTACCTTCATATATTGTCGGTCTTATAACTATTTTGTAAAGCTTACCCATTTCTGTAGACATCCTTCTATCATATAACACCACAAGAGCTCTTTTCCGACCAAGTTGAGTTAAGCTATATGAATGAATCCTACTGACCATGTTACTCCGTGTAAGCTTATCAAATATCCTTGCTACTACATGTAAAAGCTCATTATGGGAGTATGTTTCCTGTCAGTTGGTTCACTTTCCGAATACCACCGATTTGGCTTCTTTAGGAGGAGGCTAATTCTTGAAAGAGAAGTTTAATAATGAACATTTTACTCTTGCATGAGACTTTCTGTTATGCATCTAAGCAGAAAACATTCATAAGAAACATGTCGAAATCTTTGTTTACAAATTCGGATGAAATGTTTTATAACACTCCAACGTGTCTTAGTAGTTATTGATTCATTAATTATTTTCTTTACTGTTTGTTCATTACACTTCTTTATATATATATAGTAGTGAGTTGTAATTTGCTTATAATGGTGATTTTCATGTTCTTCTGCAGAAAGTAAAGAAGTTCTCGCTTTCTGATCCGAGGATAGGGAAACCAGAAGGGAGCAATGAGAAAAGAAGTTAATCCTTGTGAAGTCATAAGGAATGTCTTCTGTGTTGTGAATTTGCTCCTGATTCTTCTTATTCGGCGGAATAAGCATTTACCATCTTATTCTAACATGTACAATTGTCCTAAACATCTCATTTCTGTTTCCTACACTTGTTAGTTTTCTCTTTTTCAGTTATTACTTCGAAATCATGAAAATTTTACATGGTTTATGTGAAATCTATTAAGACATATATGTGGAGTATAACACTAAATCAGGTTAGTTTACCATGTCTTGTATTCATGACTTGTATGAGTATTTTGATTCG</genome_strand>
        <mrna_strand>AGTCTTCAACCTGTTTGTGGGCAAGAAGCACTTGATCTCCTAAATTGCACCACTGAATCGCCTTACGATAAGGAGAAATGCCAAAAGTTGCTTGAAACTTTGCGCCAATGCGTAATCAACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAAGAAGTTCTCGCTTTCTGATCCGAGGATAGGGAAACCAGAAGGGAGCAATGAGAAAAGAAGTTAATCCTTGTGAAGTCATAAGGAATGTCTTCTGTGTTGTGAATTTGCTCCTGATTCTTCTTATTCGGCGGAATAAGCATTTACCATCTTATTCTAACATGTACAATTGTCCTAAACATCTCATTTCTGTTTCCTACACTTGTTAGTTTTCTCTTTTTCAGCTATTACTTCGAAATCATGAAAATTTTACATGGATTATGTGAAATCTATTAAGACATATATGTGGAGTATAACACTAAATCAGGTTAGTTTACCATGTCTTGTATTCATGACTTGTATGAGTATTTTGATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722216" ref_strand="+" ref_description="SGN-E722216 [FC16CD06]">
      <seq>gaccagttccagaattctgaattgcagtatcatagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgttaaaactcttatgttgggttcaaagtatgcattttaaccctttgcatctgcactttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34090" stop="28713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33791" g_stop="33737" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="139" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="267" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="372" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29013" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="807" r_length="435" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E722216" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33791" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAGTTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTTGCATCTGCACTTTAGT</genome_strand>
        <mrna_strand>GACCAGTTCCAGAATTCTGAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTTGCATCTGCACTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348461" ref_strand="+" ref_description="SGN-E348461 [cTOF-30-M21]">
      <seq>atctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaagcgggaaagtcgaacaggtttcgtcgtgaaacaatttgattntctctttgcttgcaagaatgtttatcagttatggtgttaaacntctatgtttgggttcaaagtatgcattttaaccctttgcatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="33922" stop="28722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33745" g_stop="33737" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="93" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="221" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="326" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29022" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="753" r_length="427" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E348461" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33745" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGG-TTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATG-TTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTTGCATCTG</genome_strand>
        <mrna_strand>ATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAA-GCGGGAAAGTCGAACAGGTTTCGTCGTGAAACAATTTGATTNTCTCTTTGCTTGCAAGAATGTTTATCAGTTATGGTGTTAAACNTCTATGTTTGGGTTCAAAGTATGCATTTTAACCCTTTGCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228925" ref_strand="+" ref_description="SGN-E228925 [cLEL-29-A21](-)">
      <seq>aatggcagcatttgccttacattttaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgatagagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcgtcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgttaaaactcttatgttgggttcaaagtatgcattttaaccctttgcatctgcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="29938" stop="28720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29638" g_stop="29576" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29447" g_stop="29023" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="485" r_length="424" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="488" polyA_stop="507"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E228925" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29638" e_stop="29576"/>
          <exon e_start="29447" e_stop="29023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTTGCATCT</genome_strand>
        <mrna_strand>AATGGCAGCATTTGCCTT-ACATTTT-AAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATA-GAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTTGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228829" ref_strand="+" ref_description="SGN-E228829 [cLEL-29-A21](-)">
      <seq>tgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcgtcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgttaaaactcttatgttgggttcaaagtatgcattttaaccctttgcatctgccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="29664" stop="28721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29364" g_stop="29023" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="364"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E228829" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29364" e_stop="29023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTTGCATCT</genome_strand>
        <mrna_strand>TGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTTGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725325" ref_strand="+" ref_description="SGN-E725325 [FC26DA11]">
      <seq>gggcgattggcggccaatcggccgaattgttttcttcaccagttccagaattctgaattgcagtatcatagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgttaaaactcttatgttgggttcaaagtatgcattttaacccttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34113" stop="28730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33785" g_stop="33737" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="91" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="175" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="303" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="408" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29027" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="829" r_length="421" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E725325" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33785" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTTGC</genome_strand>
        <mrna_strand>TTCCAGAATTCTGAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710078" ref_strand="+" ref_description="SGN-E710078 [FA54AF01]">
      <seq>agaattctgaattgcagtatcgtagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgccgtggtatttagtagtttatatattatgtattatgaaattgtgttcttacttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcgtcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgttaaaactcttatgttgggttcaaagtatgcattttaacccttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34081" stop="28730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33781" g_stop="33737" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="129" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="257" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="362" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29029" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="788" r_length="426" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="789" polyA_stop="804"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E710078" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33781" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTG-------TTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTT</genome_strand>
        <mrna_strand>AGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCCGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTACTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554443" ref_strand="+" ref_description="SGN-E554443 [cTSC-4-F12]">
      <seq>ctgaattgcagtatcgtagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcgtcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgttaaaactcttatgttgggttcaaagtatgcatttttaccctttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34075" stop="28729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33775" g_stop="33737" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="123" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="251" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="356" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29029" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="775" r_length="419" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="776" polyA_stop="793"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E554443" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33775" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTT</genome_strand>
        <mrna_strand>CTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTTACCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354481" ref_strand="+" ref_description="SGN-E354481 [cTOS-17-J20]">
      <seq>tggactcaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcgtcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgttaaaactcttatgttgggttcaaagtatgcattttaaccctttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="29630" stop="28726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29330" g_stop="29029" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="303" polyA_stop="316"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E354481" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29330" e_stop="29029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTT</genome_strand>
        <mrna_strand>TGGACTC-AAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711183" ref_strand="+" ref_description="SGN-E711183 [FB01BA02]">
      <seq>cgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgttaaaactcttatgttgggttcaaagtatgcattttaaccanaaaaaaaaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="31220" stop="28733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30921" g_stop="30869" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="158" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29447" g_stop="29033" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="573" r_length="415" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="574" polyA_stop="585"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E711183" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30921" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACC</genome_strand>
        <mrna_strand>CGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718874" ref_strand="+" ref_description="SGN-E718874 [FC06AD04]">
      <seq>gggcgattggcggccaatcggccgaattgaccagttccagaattctgaattgcagtatcatagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagattatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgttaaaactcttatgttgggttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34093" stop="28748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33785" g_stop="33737" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="83" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="167" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="295" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="400" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29048" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="800" r_length="400" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E718874" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33785" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAA</genome_strand>
        <mrna_strand>TTCCAGAATTCTGAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGATTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718541" ref_strand="+" ref_description="SGN-E718541 [FC04DH06]">
      <seq>agggcgaatggcggccaatcggccgaattgaccagttccagaattctgaattgcagtatcatagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgttaaaactcttatgttgggttcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34093" stop="28748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33785" g_stop="33737" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="84" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="168" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="296" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="401" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29048" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="801" r_length="400" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="802" polyA_stop="820"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E718541" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33785" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAA</genome_strand>
        <mrna_strand>TTCCAGAATTCTGAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216992" ref_strand="+" ref_description="SGN-E216992 [cLEL-1-A21](-)">
      <seq>agcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcgtcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgttaaaactcttatgttgggttcccnaaaaaaaaaaaaaaaaaaaaaannc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="29932" stop="28751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29632" g_stop="29576" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29447" g_stop="29048" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="457" r_length="400" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="458" polyA_stop="480"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E216992" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29632" e_stop="29576"/>
          <exon e_start="29447" e_stop="29048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAA</genome_strand>
        <mrna_strand>AGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCCCN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715068" ref_strand="+" ref_description="SGN-E715068 [FB13BA02]">
      <seq>ctgaattgcagtatcatagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttgccagaatgttatcagttatggtgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34075" stop="28767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33775" g_stop="33737" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="123" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="251" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="356" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29060" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="744" r_length="388" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E715068" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33775" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTAT</genome_strand>
        <mrna_strand>CTGAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTGCCAGAATGTTATCAGTTATGGTGTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724837" ref_strand="+" ref_description="SGN-E724837 [FC25BC01]">
      <seq>gggcgattggcggccaatcggccgaattgaccagttccagaattctgaattgcagtatcatagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgttaaaactcttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34093" stop="28761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33785" g_stop="33737" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="83" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="167" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="295" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="400" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29062" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="786" r_length="386" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E724837" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33785" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTT</genome_strand>
        <mrna_strand>TTCCAGAATTCTGAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718327" ref_strand="+" ref_description="SGN-E718327 [FC04BD07]">
      <seq>ggtttcttcaccagttccagaattctgaattgcagtatcatagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgttaaaananaaannnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34098" stop="28767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33799" g_stop="33737" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="147" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="275" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="380" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29067" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="761" r_length="381" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="771" polyA_stop="809"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E718327" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33799" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCTTCACCAGTTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAA</genome_strand>
        <mrna_strand>GGTTTCTTCACCAGTTCCAGAATTCTGAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723163" ref_strand="+" ref_description="SGN-E723163 [FC19CD12]">
      <seq>aatcggccgaattgaccagttccagaatcctgaattgcagtatcatagggcttaggaggatctctgagttagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgttnaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34093" stop="28767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33785" g_stop="33737" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="68" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33623" i_length="114">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33622" g_stop="33535" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="156" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="284" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="389" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29067" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="770" r_length="381" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="771" polyA_stop="788"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E723163" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33785" e_stop="33737"/>
          <exon e_start="33622" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAA</genome_strand>
        <mrna_strand>TTCCAGAATCCTGAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG..................................................................................................................TTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTNAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720389" ref_strand="+" ref_description="SGN-E720389 [FC10CG03]">
      <seq>gggcgattggcggccaatcggccgaattgagttccagaattctgaattgcagtatcatagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgttaaaaaaaaaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34087" stop="28767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33785" g_stop="33737" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="80" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="164" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="292" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="397" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29067" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="778" r_length="381" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="779" polyA_stop="818"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E720389" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33785" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAA</genome_strand>
        <mrna_strand>TTCCAGAATTCTGAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711774" ref_strand="+" ref_description="SGN-E711774 [FB02DG10]">
      <seq>cggtaaagcagtatcatagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcactgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34075" stop="28767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33775" g_stop="33737" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="123" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="251" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="356" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29067" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="737" r_length="381" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="738" polyA_stop="748"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E711774" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33775" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAA</genome_strand>
        <mrna_strand>CGGTAAAGCAGTATCATAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCACTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719331" ref_strand="+" ref_description="SGN-E719331 [FC07CB04]">
      <seq>agccaccaaaggtagctttcaggacaaaggcctttaaaccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="29982" stop="28767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="116" r_length="105" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29447" g_stop="29067" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="497" r_length="381" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="538"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E719331" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAA</genome_strand>
        <mrna_strand>GTAGCTTTCAGGACAAAGGCCTTTAAACCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552804" ref_strand="+" ref_description="SGN-E552804 [cTSB-5-B20]">
      <seq>ggatcccccgggctgcaggccagaattctgaattgcagtatcgtagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcgtcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggtgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34083" stop="28770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33785" g_stop="33737" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="66" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="150" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="278" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="383" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29070" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="761" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E552804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33785" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTA</genome_strand>
        <mrna_strand>GGCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719077" ref_strand="+" ref_description="SGN-E719077 [FC06CG04]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgatgaccagttccagaattctgaattgcagtatcatagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34092" stop="28774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33785" g_stop="33737" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="99" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="183" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="311" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="416" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29074" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="790" r_length="374" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E719077" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33785" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGT</genome_strand>
        <mrna_strand>TTCCAGAATTCTGAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721231" ref_strand="+" ref_description="SGN-E721231 [FC13AF09]">
      <seq>agttccagaattctgaattgcagtatcatagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttgcaagaatgttatcagttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34087" stop="28778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33787" g_stop="33737" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="135" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="263" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="368" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29079" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="737" r_length="369" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="738" polyA_stop="778"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E721231" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33787" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTT</genome_strand>
        <mrna_strand>AGTTCCAGAATTCTGAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710191" ref_strand="+" ref_description="SGN-E710191 [FA54CC01]">
      <seq>agaattctgaattgcagtatcgtagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgccgtggtatttagtagtttatatattatgtattatgaaattgtgttcttacttcttatgcataatcacaacttaaaaggcgggaaagtcgaaccggttcctcgtgaaacaattttgattttctctttgcttgcaagaatgttatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34081" stop="28782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33781" g_stop="33737" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="129" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="257" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="362" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29082" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="736" r_length="374" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E710191" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33781" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTG-------TTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAA-TTTGATTTTCTCTTTGCTTGCAAGAATGTTATCA</genome_strand>
        <mrna_strand>AGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCCGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTACTTCTTATGCATAATCACAACTTAAAAGGCGGGAAAGTCGAACCGGTTCCTCGTGAAACAATTTTGATTTTCTCTTTGCTTGCAAGAATGTTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216628" ref_strand="+" ref_description="SGN-E216628 [cLEL-1-F19](-)">
      <seq>ccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcgtcgtgaaacaatttcattttctctttgcttgcaagaatgttatcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="29982" stop="28782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="111" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29447" g_stop="29082" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="477" r_length="366" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="495"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E216628" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCA</genome_strand>
        <mrna_strand>GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTCATTTTCTCTTTGCTTGCAAGAATGTTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712705" ref_strand="+" ref_description="SGN-E712705 [FB05CD04]">
      <seq>agaattctgaattgcagtatcatagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttgcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34081" stop="28790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33781" g_stop="33737" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="129" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="257" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="362" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29083" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="727" r_length="365" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E712705" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33781" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATC</genome_strand>
        <mrna_strand>AGAATTCTGAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714431" ref_strand="+" ref_description="SGN-E714431 [FB11BG03]">
      <seq>gaattgcagtatcatagggcttaggaggatctctgagttagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttgcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34073" stop="28790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33773" g_stop="33737" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33623" i_length="114">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33622" g_stop="33535" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="125" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="253" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="358" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29083" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="723" r_length="365" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E714431" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33773" e_stop="33737"/>
          <exon e_start="33622" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATC</genome_strand>
        <mrna_strand>GAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG..................................................................................................................TTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555655" ref_strand="+" ref_description="SGN-E555655 [cTSC-6-O17]">
      <seq>gatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagctagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcagggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcgtcgtgaaacaatttgattttctctttgcttgcaagaatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="33871" stop="28784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33571" g_stop="33535" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="165" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="270" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29447" g_stop="29084" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="634" r_length="364" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E555655" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33571" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTAT</genome_strand>
        <mrna_strand>GATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCTAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCAGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717113" ref_strand="+" ref_description="SGN-E717113 [FB18DH03]">
      <seq>attctgaattgcagtatcgtagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgccgtggtatttagtagtttatatattatgtattatgaaattgtgttcttacttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcgtcgtgaaacaatttgattttctctttgcttgcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34078" stop="28790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33778" g_stop="33737" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="126" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="254" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="359" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29091" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="723" r_length="364" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="724" polyA_stop="733"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E717113" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33778" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTG-------TTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGA</genome_strand>
        <mrna_strand>ATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCCGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTACTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332148" ref_strand="+" ref_description="SGN-E332148 [cTOD-16-H3]">
      <seq>tgaattgcagtatcgtagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggnatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaaacaggtcgtcgtgaaacaattttgattttctctttgcttgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34074" stop="28790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33774" g_stop="33737" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="122" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="250" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="355" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29091" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="713" r_length="358" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E332148" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33774" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAA-TTTGATTTTCTCTTTGCTTGCAAGA</genome_strand>
        <mrna_strand>TGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGNATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAAACAGGTCGTCGTGAAACAATTTTGATTTTCTCTTTGCTTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260833" ref_strand="+" ref_description="SGN-E260833 [cLEG-55-A11]">
      <seq>cagtatcgtagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcgtcgtgaaacaatttgattttctctttgcttgcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34067" stop="28790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33767" g_stop="33737" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="115" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="243" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="348" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29091" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="705" r_length="357" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="706" polyA_stop="719"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E260833" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33767" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGA</genome_strand>
        <mrna_strand>CAGTATCGTAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744903" ref_strand="+" ref_description="SGN-E744903 [GI|441456]">
      <seq>atttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcgtcgtgaaacaatttgattttctctttgcttgcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="33916" stop="28790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33616" g_stop="33535" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="210" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="315" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29447" g_stop="29091" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="672" r_length="357" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="673" polyA_stop="686"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E744903" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33616" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGA</genome_strand>
        <mrna_strand>ATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718633" ref_strand="+" ref_description="SGN-E718633 [FC05BA12]">
      <seq>tggcggccaatcggccgaattgagttccagaattctcatttaagtatcatagggcttaggaggatctctgagggattcggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34071" stop="28793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33785" g_stop="33737" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="72" r_length="48" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="156" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="284" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="389" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29092" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="745" r_length="356" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E718633" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33785" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAG</genome_strand>
        <mrna_strand>TTCCAGAATTCT-CATTTAAGTATCATAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTCGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357392" ref_strand="+" ref_description="SGN-E357392 [cTOS-23-P1]">
      <seq>tgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagnagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaaacttaaaaggcgggaaagtcgaacaagttcgtcgtgaaacaatttgattttctctttgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="33908" stop="28795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33608" g_stop="33535" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="202" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="307" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29447" g_stop="29095" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="661" r_length="354" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E357392" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33608" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATC-AAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGC</genome_strand>
        <mrna_strand>TGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGNAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAAACTTAAAAGGCGGGAAAGTCGAACAAGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724229" ref_strand="+" ref_description="SGN-E724229 [FC23BH07]">
      <seq>cggccaaatcggccgaattgaccagttccagacctctgaattgcagtatcatagggcttaggaggatctctgagttagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34093" stop="28796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33785" g_stop="33737" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="74" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33623" i_length="114">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33622" g_stop="33535" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="162" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="290" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="395" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29096" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="747" r_length="352" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E724229" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33785" e_stop="33737"/>
          <exon e_start="33622" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTG</genome_strand>
        <mrna_strand>TTCCAGACCTCTGAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG..................................................................................................................TTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722327" ref_strand="+" ref_description="SGN-E722327 [FC16DG07]">
      <seq>gggcgattggcggccaatcggccgaattggttttcttcaccagttccagaattctgaattgcagtatcatagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaacaatttgattttctctttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34113" stop="28798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33785" g_stop="33737" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="92" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="176" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="304" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="409" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29098" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="759" r_length="350" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E722327" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33785" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCT</genome_strand>
        <mrna_strand>TTCCAGAATTCTGAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAACAATTTGATTTTCTCTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718728" ref_strand="+" ref_description="SGN-E718728 [FC05CD09]">
      <seq>gggcgattggcggccaatcggccgaattgaccagttccagaattctgaattgcagtatcatagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34093" stop="28816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33785" g_stop="33737" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="83" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="167" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="295" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="400" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29116" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="732" r_length="332" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E718728" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33785" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAA</genome_strand>
        <mrna_strand>TTCCAGAATTCTGAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724075" ref_strand="+" ref_description="SGN-E724075 [FC22DH11]">
      <seq>aatcggccgaattgaaaagtactaggggcttctaagtgaaaattacctctcactgatacgttacagatcaaaagcactttctcatttttctttcactgctatatatataaatgaaaatggagtcgtaattgtttcttcaccagttccagaattctgaattgcagtatcatagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34228" stop="28823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33929" g_stop="33737" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="276" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="404" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="509" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29123" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="834" r_length="325" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E724075" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33929" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGTCACATCTTCAAAGTACTAGGGGGTTCTAAGTGAAAATTACCTCTCACTGATACGTTACAGATCAAAAGCACTTTCTCATTTTTCTTTCACTGCTATATATATAAATGAAAATGGAGTCGTAATTGTTTCTTCACCAGTTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGT</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGAAAAGTACTAGGGGCTTCTAAGTGAAAATTACCTCTCACTGATACGTTACAGATCAAAAGCACTTTCTCATTTTTCTTTCACTGCTATATATATAAATGAAAATGGAGTCGTAATTGTTTCTTCACCAGTTCCAGAATTCTGAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721436" ref_strand="+" ref_description="SGN-E721436 [FC13DF06]">
      <seq>gaccagttccagaattctgaattgcagtatcatagggcttaggaggatctctgagttagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34090" stop="28816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33791" g_stop="33737" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33623" i_length="114">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33622" g_stop="33535" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="143" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="271" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="376" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29132" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="692" r_length="316" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="754"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E721436" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33791" e_stop="33737"/>
          <exon e_start="33622" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAGTTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAG</genome_strand>
        <mrna_strand>GACCAGTTCCAGAATTCTGAATTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG..................................................................................................................TTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719546" ref_strand="+" ref_description="SGN-E719546 [FC08AG04]">
      <seq>gggcgattggcggccaatcggccgaattgaccagttccagaattccgatttgcagtatcatagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtaatttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcatcgtgaananaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34093" stop="28816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33785" g_stop="33737" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="83" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="167" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="295" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="400" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29132" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="716" r_length="316" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="732" polyA_stop="748"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E719546" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33785" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAG</genome_strand>
        <mrna_strand>TTCCAGAATTCCGATTTGCAGTATCATAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTAATTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228879" ref_strand="+" ref_description="SGN-E228879 [cLEL-29-J6](-)">
      <seq>aggttttccacccgaacatcaatagcaatggcagcctttgccttgacattttaaaggaacagtggagccctgccctttccatctcccaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtattagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcgtcgtgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="29964" stop="28816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29664" g_stop="29576" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="0.92"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29447" g_stop="29132" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="405" r_length="316" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="438"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E228879" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29664" e_stop="29576"/>
          <exon e_start="29447" e_stop="29132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAG</genome_strand>
        <mrna_strand>AGGTTTTCCACCCGAACATCAATAGCAATGGCAGCCTTTGCCTTGACATTTTAAAGGAACAGTGGAGCCCTGCCCTTTCCATCTCCCAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATTAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228975" ref_strand="+" ref_description="SGN-E228975 [cLEL-29-J6](-)">
      <seq>gaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagtcgaacaggttcgtcgtgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="29951" stop="28816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29651" g_stop="29576" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29447" g_stop="29132" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="393" r_length="317" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="426"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E228975" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29651" e_stop="29576"/>
          <exon e_start="29447" e_stop="29132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAG-ACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAG</genome_strand>
        <mrna_strand>GAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGAACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353356" ref_strand="+" ref_description="SGN-E353356 [cTOS-15-G12]">
      <seq>tggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagaggagccctgcacttaccatctccaaggtactgctctctatctgctctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagaagcttatatattatgtagtatgaaattgtgttcttatgcataatcaaaacttaaaaggcgggaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="31297" stop="28839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30998" g_stop="30869" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="235" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29447" g_stop="29139" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="544" r_length="309" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E353356" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30998" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGT</genome_strand>
        <mrna_strand>TGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGAGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGCTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGAAGCTTATATATTATGTAGTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253845" ref_strand="+" ref_description="SGN-E253845 [cLEG-28-N13]">
      <seq>ctttcccgccttttaagttttgattatgcataagaacacaatttgataatacataatatataaactactaaataccacagcagggaatcagaccccgatggtgacagcaactattcgatagataatacaaaataccacatcggggacagagatggtcacagcaactatcccatggcaaatttttgagtccagctgcgggcaggtgtctcatacttgctcctatcagttttgtacatatgagcaatctccggcaccaaagggtcatcgggattagggtctgtcagctgagaacagatagagagcagtaccttggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="28840" stop="29752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29140" g_stop="29449" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29450" i_stop="29725" i_length="276">
            <donor d_prob="0.778" d_score="0.98"/>
            <acceptor a_prob="0.800" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29726" g_stop="29731" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="316" r_length="6" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E253845" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29140" e_stop="29449"/>
          <exon e_start="29726" e_stop="29731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCCGCCTTTTAAGTTTTGATTATGCATAAGAACACAATTTCATAATACATAATATATAAACTACTAAATACCACAGCAGGGAATCAGACCCCGATGGTCACAGCAACTATTCGATAGATAATACAAAATACCACAGCAGGGACAGAGATGGTCACAGCAACTATCCCATGGCAAATTTTTGAGTCCAGCTCCGGGCAGTTGTCTCATACTTGCTCCTATCAGTTTTGTACATATGAGCAATCTCCGGCACCAAAGGGTCATCGGGATTAGGGTCTGTCAGCAGAGAACAGATAGAGAGCAGTACCTGCAAGGGTTGATGAATTATGAGACTGGTAAAATAGTTCAAATTTACTTTTTCAAGATGTAAATAACCAAAATAAAAAGATCGATGTGTGGTAAGGCTGGTAACCTATACCAAGAAATTCAACTAACCTTGGAGATGGTAAGTGCAGGGCTCCACTGTTCCTTCAAAATGTCAAGGCAAATGCTGCCATTGCTATTGATGTTCGGGTGGAAAACCTTTGTCCTGAAAGCTACCTGCACAGTTATTCCATGAAATGACGATGAGATATTTGCTGACAGGGGAAA</genome_strand>
        <mrna_strand>CTTTCCCGCCTTTTAAGTTTTGATTATGCATAAGAACACAATTTGATAATACATAATATATAAACTACTAAATACCACAGCAGGGAATCAGACCCCGATGGTGACAGCAACTATTCGATAGATAATACAAAATACCACATCGGGGACAGAGATGGTCACAGCAACTATCCCATGGCAAATTTTTGAGTCCAGCTGCGGGCAGGTGTCTCATACTTGCTCCTATCAGTTTTGTACATATGAGCAATCTCCGGCACCAAAGGGTCATCGGGATTAGGGTCTGTCAGCTGAGAACAGATAGAGAGCAGTACCT....................................................................................................................................................................................................................................................................................TGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258369" ref_strand="+" ref_description="SGN-E258369 [cLEG-49-P22]">
      <seq>cagtatcgtagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtagtttatatattatgtattatgaaaatgtgttcttatgcataatcaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34067" stop="28856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33767" g_stop="33737" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="115" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="243" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="348" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29156" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="640" r_length="292" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E258369" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33767" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAAC</genome_strand>
        <mrna_strand>CAGTATCGTAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAAATGTGTTCTTATGCATAATCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318843" ref_strand="+" ref_description="SGN-E318843 [cTOB-11-L16]">
      <seq>ttctgaattgcagtatcgtaaggcttaagaggatctctgagttagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgctgtgaccatcggggtctgattccctgctgtggtatttagtaagttatatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34077" stop="28892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33777" g_stop="33737" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33623" i_length="114">
            <donor d_prob="0.996" d_score="0.95"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33622" g_stop="33535" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="129" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="257" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="362" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29192" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="618" r_length="256" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E318843" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33777" e_stop="33737"/>
          <exon e_start="33622" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTAT</genome_strand>
        <mrna_strand>TTCTGAATTGCAGTATCGTAAGGCTTAAGAGGATCTCTGAG..................................................................................................................TTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAAGTTATATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247705" ref_strand="+" ref_description="SGN-E247705 [cLEF-42-C14]">
      <seq>tgaattgcagtatcgtagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcgaatagttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34074" stop="28945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33774" g_stop="33737" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="122" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="250" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="355" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29245" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="558" r_length="203" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E247705" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33774" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCT</genome_strand>
        <mrna_strand>TGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312542" ref_strand="+" ref_description="SGN-E312542 [cLEZ-20-J14]">
      <seq>tgaattgcagtatcgtagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttgtattatctatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34074" stop="28955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33774" g_stop="33737" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="122" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="250" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="355" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29255" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="548" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E312542" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33774" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCG</genome_strand>
        <mrna_strand>TGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254818" ref_strand="+" ref_description="SGN-E254818 [cLEG-33-M6]">
      <seq>tgaatcgcagtatcgtagggcttatgacgatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctgtccctgctgtggtattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34074" stop="28967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33774" g_stop="33737" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="122" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="250" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="355" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29267" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="536" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E254818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33774" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTG</genome_strand>
        <mrna_strand>TGAATCGCAGTATCGTAGGGCTTATGACGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315821" ref_strand="+" ref_description="SGN-E315821 [cTOA-26-L24]">
      <seq>ttaagggatctacctgtcacatcttcaaagtactagggggttctaagtgaaaattacctctcactgatacgttacagatcaaaagcactttctcatttttctttcactgctatatatataaatgaaaatggagtcgtaattgtttcttcaccagttccagaattctgaattgcagtatcgtagggcttaggaggatctctgagttagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgaccatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34239" stop="28986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33939" g_stop="33737" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33623" i_length="114">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33622" g_stop="33535" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="291" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="419" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="524" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29286" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="686" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E315821" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33939" e_stop="33737"/>
          <exon e_start="33622" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGGATCTACCTGTCACATCTTCAAAGTACTAGGGGGTTCTAAGTGAAAATTACCTCTCACTGATACGTTACAGATCAAAAGCACTTTCTCATTTTTCTTTCACTGCTATATATATAAATGAAAATGGAGTCGTAATTGTTTCTTCACCAGTTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTG</genome_strand>
        <mrna_strand>TTAAGGGATCTACCTGTCACATCTTCAAAGTACTAGGGGGTTCTAAGTGAAAATTACCTCTCACTGATACGTTACAGATCAAAAGCACTTTCTCATTTTTCTTTCACTGCTATATATATAAATGAAAATGGAGTCGTAATTGTTTCTTCACCAGTTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAG..................................................................................................................TTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336045" ref_strand="+" ref_description="SGN-E336045 [cTOE-12-C17]">
      <seq>tagggcttaggaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaatttgccatgggatagttgctgtgacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34059" stop="28992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33759" g_stop="33737" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="107" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="235" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="340" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29292" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="496" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E336045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33759" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCA</genome_strand>
        <mrna_strand>TAGGGCTTAGGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297749" ref_strand="+" ref_description="SGN-E297749 [cLEW-15-O1]">
      <seq>ctgaattgcaatatcgcagggcttatgaagatctctgagggatttggtctgctatggcatccaagcggattctcaacgagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaacgttttccaccctaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgccccgagctggactcaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="33922" stop="29018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33775" g_stop="33737" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="123" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="251" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="356" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29318" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="486" r_length="130" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E297749" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33775" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAAT</genome_strand>
        <mrna_strand>CTGAATTGCAATATCGCAGGGCTTATGAAGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAACGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAACGTTTTCCACCCTAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCCGAGCTGGACTCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286470" ref_strand="+" ref_description="SGN-E286470 [cLES-12-C2]">
      <seq>tgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcaggacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatgtacaaaactgataggagcaagtatgagacaactgcccggagctggactcaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="31254" stop="29018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30954" g_stop="30869" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="191" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29447" g_stop="29318" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="321" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E286470" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30954" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAAT</genome_strand>
        <mrna_strand>TGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294029" ref_strand="+" ref_description="SGN-E294029 [cLET-13-P14]">
      <seq>attctgaattgcagtatcgtagggcttaagaggatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagatcctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgtttcttgttactattcattttccacctgactatccattcaagccaccaaaggtagctttcatgacaaaggttttccacccgaacatcaatagcaatggcagcatttgccttgacattttgaaggaacagtggagccctgcacttaccatctccaaggtactgctctctatctgttctctgctgacagaccctaatcccgatgaccctttggtgccggagattgctcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="34078" stop="29073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33778" g_stop="33737" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="126" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="254" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29680" g_stop="29576" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="359" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29447" g_stop="29373" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="434" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E294029" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33778" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
          <exon e_start="29680" e_stop="29576"/>
          <exon e_start="29447" e_stop="29373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAGGTATGAAATTAGGGATGTGTATTGTTGATGACACTTGATGATCAACTTGTTTGTTTGCTTATTAACATGATATTTCTGAAACTTCTCTTGCTTCTTTTATAAAATCAAATTTGTATCATTTCTAGACTTGTAATTTTACTGTAACAACTGGATTGAAGCTTCTTTGTTCATTTTATTAACTTTATTAGGTAAGCGTAGATATGAAATCTCAACTCAACTTGTGTCAACTGTTGATTGTGATCCTTTTCCTTTCCTATACAAAGTCACAACTCACATTTGTAAATTGCCTTCAATGAATTTTGAATTCTGGGTGTTTGACACCATCATATGTAATCTAGCCGATTTTAGAAACCATGTCATCAGGTCCGTTAGATTTTAATCTTGTTAGTTTTTCCCCCCAAAAAACTATGAGCAGCAATAGCTCATTACAAGATTTAAGCAGGCAGATCACACTATATTTGAGAAGATGATGCTACATATGAAAGTACTTGAGTTCAACTTTAGTTCTGTCGCTTGTCCCATGCCCTGTGATTACAGTTTCAAATGGATATATGTCTCCTGTTTGGTGGACTGAGCTTCGATGATAAGGAAGCCATGGTAAAAGGCTGTGAATTACTATCATTGGCAGAGTGCATTCTGTTAATGCAGTTCATGAAGGTCTAGTACCGAGTCTTGTTGTTATTTCAGAAACTGTTCTGCAACACTTGCTAAGTTACTAATGCATAGGAATCTAGTCTATTATCAGCAAGAGGGTATTTTTTCCACTTGTTTATTTCAACCAAGTGGTACGCCTGATCTAAGGTAGGAAGAGTATATCATATTGTGCAAATTGAAGAAGTATGGCTTAGATTTTTCTTTTAGTCAAGGCTTGGTGCATTGACAAACCATGAGATTTTGGAATCTCGGTACTCCTTTCTTATAGGTGTATTAGCAACTTAAATGCAAGTTTTGCACATTGCTTGAGAATCACATAAAAGAATTTCTCTTCACATCTTTTTAACTGTGACATAATATGTTTCAAGATCTATTTGCCAAAGCACGTAAGTTAAAAGAACTTCTATGCGCAAAATCAATGAGGATGTGATGTCACTTCCCCACCTGATGTTGTTCTGCTACCTCCTTTACTTCTAAATTTTTTTTCCCCTGTCAGCAAATATCTCATCGTCATTTCATGGAATAACTGTGCAGGTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAGGTTAGTTGAATTTCTTGGTATAGGTTACCAGCCTTACCACACATCGATCTTTTTATTTTGGTTATTTACATCTTGAAAAAGTAAATTTGAACTATTTTACCAGTCTCATAATTCATCAACCCTTGCAGGTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATG</genome_strand>
        <mrna_strand>ATTCTGAATTGCAGTATCGTAGGGCTTAAGAGGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTTCATGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG................................................................................................................................GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337610" ref_strand="+" ref_description="SGN-E337610 [cTOE-11-L9]">
      <seq>agtattcgtaggcttaggaagatctctgagggatttggtctgctatggcatccaagcggattctcaaggagcttaaggatctccagaaagaacctcctacctcttgcagtgctggcccagtagctgaagatatgttccattggcaagcaacaatcatgggtccagctgacagtccctattctggtggagtgttccttgttactattcattttccacctgactatccattcaagccaccaaaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="33922" stop="30566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33766" g_stop="33737" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33618" g_stop="33535" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="114" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30996" g_stop="30869" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="242" r_length="128" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E337610" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33766" e_stop="33737"/>
          <exon e_start="33618" e_stop="33535"/>
          <exon e_start="30996" e_stop="30869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTA-TCGTAGGGCTTAGGAGGATCTCTGAGGTAAAGTTGCTTCTCATTTCTTCTTCAGTTGTGCTTTTTATGGTGTGTGATTATCTTCCTGTATGTGTAAATTTGTGCATTTGGAGTTGATCTAGGGTTTTGTTTTATGTTAAGTTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTGGTACCTTTTTCTTCTCCTTATACTTTTAACTATTTTTTTCTAAAAAATTCTGGTACTGTTCGTGCTGGTTTTGTTGAGATTGTAGGTTTGTTACTTTTTTTTTTCGTTTTTCTGTATCTGAACAGATCTTCTCTAAAAGTTATCGTTTTGATTGCTCAGCTTCATGATTAAATGGTTAACATTTCTAGTTTGGGAAAGTGTATAGAGTTGAAGCTGTTTTTAGTAGTTTTACTAGTTTTAATGTATGTGTGTTGCTGGTGAATTCTGTAGTATATTAATAAAAGAATCGTATGTATAAAAATATATAAATTTTGTGTTATAAGAATTGACGTTGAGATAAATGCAACATTCATTTGAATTACGAAGTAAAATTGGGTTGATGCAATAGTTGAATTCAATGTAATTAGGTGTCTGCTCAACCTGCAAATAATAATAATTTAGGTTAAGTTGAATTTTGGGGAAGAATACATTCTTGAAAGCATTTTGGGCATTTGGTTATCTTCATCAAGTCAAAAAAAAGCTAACAAATTTATAAAGAAATAGATTTAAAAGAAACTTTCAATTGATGAAGACTTTCTAAATGATATAGTTTAGGCATAGGATCTGATTAAACAACTAAACTATTTTTTTTATAAAGATTAAACTTTAATGTTAAACCCTAAAAGGAGTTCAGGGAACTCAAAAAGTTCTTTAATGTGATTTCTCCTGTGTTATAACAAAAAGAAGACTTCAAAACCTAAATGAAGTTTCAAGTACTTGAATTTTGACCTAAAACATTTAATAGGGAATTAATTGGTTAAAATTTAATGACAAATAAAACAATTCCTATACCTAAATGAGTTCAAAGTGCTTGAAAGTTCCCTAATGTGATTTTTCTTCTGGTTTAATATCACTGGAACTTAAAAAAGTGTCAGATTCTTCTCTGATATTCTTTAAGCAAATTCTGCAGATCATTATTTCGGCGAAAATCTTAGGTCACATCAAACTCATTACTAGTAAAAGAGAAGGTCTGATTAAGTGTATAGATTATATGTCAAATGTAATTGAACTCCTAAACCTTAAAGAAGTTGCAAGTACATGAAATTTTGACCTAAAACATTTAATATAGAATTAATTGGTTAAAATTTAATAACAAATAAAACTACTCCTAAACCTAAAGGAGTTCAAAGTGCTTAAAAGTTCCCAGTATGATTTTTTAGAACTTAAGAAGTGACAAATTCTTCTATAATCTTCTTTCTACATATTCTCTAGATCATTATTTCGGCCAAAATCTTAAATCAAATAAACTTTGGAAATTTTAAAGAGAATATCTGAGTAGGTGTATATATTATGTGTCGATGTAATTTTATATGCTGGGATTCGATGTGTTTTTGAAGATAGAATTGTGTTGAATGTATTAGCATTTATCATGTCACCTTGGATTGAAGAAGTTACTGACTAATAGTTCAATTATAAAGGAGATACCTCTCTTACACTATTTCAATATACACCTAAATACTTAGCAATTTAAAAGTGAAGGAAGTTTAACAAAAGAATATCAACAACAAACAGTTAATGTCCACCACTCATCTACAAACACACCACTTAAGATAGGATAAACACAACGTAAGTGTTAATTGTGAATTGTGATTATTAATTTTAGCTGATTTTGTAGTCTTAGATATTAGGGAAATATTAATGACTATTTTGTGTGAACTCTTTTTTAAAAGAGTATAAAAAGCGAACAACAATTTATCTAGGGGCTTCGTGCTGTTAGTATAATATAGATATATATTATTAGTAACCCATAAATCATTTCTACTTAGTACCACACTTGGGGTTCACATCAGGATTTGAACTCATGACATGCACCTACCACACATATCGCGCCATATTATTCAGTGAACCAAAGCCTGTTCTGCTTGCACATGATTGCATTAATTCAATTGTTTTCTTGATTTTTTTCCCCCCTTTGTCTTTGGGAGGGGAGAGGGAACATCAGGTCATACTCTGTTTGCATGCTTTGAGCTTGTATGGTGTTTAATGGGCTGCAAATGAGAGTCTTGGTAGAACTAGCTCATCCCAAAATAGATCCTAACGAGATGGGTAAAATCAAAGAGAAATCTTGAGTTTGATAGCAGGTCAAATGGATTGGTATTCAGCATCGGCTTGGAAAATAAAATCAATTAGCATTATTTTGAGGGGAAAACTCCACAAACTATGTGTAATTAGTCATTTCTACTCTCTGTTAAAAGTCCCTTCATTTTTTTGACAGCTGCTATTCTAGGAAGATACAACTACAACCACAACCACAACAACATACCTAGTACTATTCTAGGAAGAATCTTACTGGAAAAAAAATAAGAAAAAACTATGGAGACTCTAGGACTTTAAGTAGAGCCTCAGGCCCTCATTAACATCTGCAAAGCTGTTCTCCGATTCTTGTGTTTTGTTAAATCTGCTGCTTGTATTGTGAGTTACTGAAGAAACTTATTTAAAGGTCTGCATGTGGCGCAAGTTGTTCTCTCATTTCTTGTGTGCTTATGTTATCTGTATTAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG</genome_strand>
        <mrna_strand>AGTATTCGTAGG-CTTAGGAAGATCTCTGAG......................................................................................................................GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGAACCTCCTACCTCTTGCAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTCCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336462" ref_strand="+" ref_description="SGN-E336462 [cTOE-4-B11]">
      <seq>ccatgcgtaagtggcataagactacacatacaaattatcggagtttgctcatccaaaaatctccatttcatcggaaaacgaagatcggagctttcgattaaatcaattcgttttgccgttcgatccttcccgatctcaaaatgaacgacggagatgtgtccaagcagatccatcagatggtcagattcatccgccaagaagcggaggagaaggccaatgagatttctgtttccgctgaagaagaattcaacattgagaagttgcagttagtggaagcggagaagaagaagattagactggaatacgagcgtaaagagaaacaagttgacgttcgtaagaaaatagagtactccatgcaactcaatgcctctcggatcaaagttcttcaagctcaggatgacttgattagctccatggaggaaacagcagcaaaggagatcttacatgttagcaaccaccatagctataagaagcttctgcatgatcttattgttcagagtttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="37004" stop="38905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37304" g_stop="37545" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37546" i_stop="37639" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37640" g_stop="37740" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="343" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37741" i_stop="38449" i_length="709">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38450" g_stop="38603" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="497" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E336462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37304" e_stop="37545"/>
          <exon e_start="37640" e_stop="37740"/>
          <exon e_start="38450" e_stop="38603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGCGTAAGTGGCATAAGACTACACATACAAATTATCGGAGTTTGCTCATCCAAAAATCTCCATTTCATCGGAAAACGAAGATCGGAGCTTTCGATTAAATCAATTCGTTTTGCCGTTCGATCCTTCCCGATCTCAAAATGAACGACGGAGATGTGTCCAAGCAGATCCATCAGATGGTCAGATTCATCCGCCAAGAAGCGGAGGAGAAGGCCAATGAGATTTCTGTTTCCGCTGAAGAAGTATGAAAATCATGTTCTAATTTTGAATTTAGAAGTGAATTTAGTTGAATTTTATCTCATGTGTTATGCATTGGCTGTGGTTTTTGTTTGTTAGGAATTCAACATTGAGAAGTTGCAGTTAGTGGAAGCGGAGAAGAAGAAGATTAGACTGGAATACGAGCGTAAAGAGAAACAAGTTGACGTTCGTAAGAAAATGTGATTTTTCTATTTTGCTCTGATTTGTGACTGTGATTAAATTTGAGATTTTTCGAAGATTTTGTTTATAAATGTTGCTCTTTATAGAAGAAGAGTTAAAGTTCAAAACTCCGCGTGAGAATTTGACATTTTGCTTCCACATATTGCTTATCAAATGATAGTAAAATGAGGTTAATAGAAGATATTCAAAAGATGTTATACTATCAACTACAATAGATAACTTTTGATTTGGCATGACGACTTTGTATTCATCCGAAACAATATAATTTTTAATTGCACTTGAAATTTTCACTTTTAGACTTAAAATCAAGTCTGAATCACACATTCTTTGTGTTCCATAGTGTCGACTAGATAAAAGAATTGCGTACACGTTAACTGATTACCACTATCATTTACTGGATATTTAGGATTCAATGTTTGCAACTCATTCTGTTTCTGCTTTCAGCAATAATATCTTTATGTTTAACATCAATTCATGTAGGACAAAGTGATTTCAAACCGAATTTGAACATATTACTGTGTGTGTTAATCTTGTTTCCTTCTTTTATTTTCAAATTAGCCACACGGTTAAATGACATTTGATTTCATAGTGATGTCCGTTTTGAAGTTGACCAAATCCTGTTAAATTACTTTTCAAAAACATTATCTAATTTCAACTTTATTGGGCCAACATAGTCTTTGACTTTCTTTTGTTATGCATTTCTTGCAGAGAGTACTCCATGCAACTCAATGCCTCTCGGATCAAAGTTCTTCAAGCTCAGGATGACTTGATTAGCTCCATGGAGGAAACAGCAGCAAAGGAGATCTTACATGTTAGCAACCACCATAGCTATAAGAAGCTTCTGCATGATCTTATTGTTCAG</genome_strand>
        <mrna_strand>CCATGCGTAAGTGGCATAAGACTACACATACAAATTATCGGAGTTTGCTCATCCAAAAATCTCCATTTCATCGGAAAACGAAGATCGGAGCTTTCGATTAAATCAATTCGTTTTGCCGTTCGATCCTTCCCGATCTCAAAATGAACGACGGAGATGTGTCCAAGCAGATCCATCAGATGGTCAGATTCATCCGCCAAGAAGCGGAGGAGAAGGCCAATGAGATTTCTGTTTCCGCTGAAGAA..............................................................................................GAATTCAACATTGAGAAGTTGCAGTTAGTGGAAGCGGAGAAGAAGAAGATTAGACTGGAATACGAGCGTAAAGAGAAACAAGTTGACGTTCGTAAGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTACTCCATGCAACTCAATGCCTCTCGGATCAAAGTTCTTCAAGCTCAGGATGACTTGATTAGCTCCATGGAGGAAACAGCAGCAAAGGAGATCTTACATGTTAGCAACCACCATAGCTATAAGAAGCTTCTGCATGATCTTATTGTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698166" ref_strand="+" ref_description="SGN-E698166 [FA05BH05]">
      <seq>ggagtttgctcatccaaaaatctccatttcatcggaaaacgaagatcggagctttcgattaaatcaattcgttttgccgttcgatccttcccgatctcaaaatgaacgacggagatgtgtccaagcagatccatcagatggtcagattcatccgccaagaagcggaggagaaggccaatgagatttctgtttccgctgaagaagaattcaacattgagaagttgcagttagtggaagcggagaagaagaagattagactggaatacgagcgtaaagagaaacaagttgacgttcgtaagaaaatagagtactccatgcaactcaatgcctctcggatcaaagttcttcaagctcaggatgacttgattagctccatggaggaaacagcagcaaaggagatcttacatgttagcaaccaccatagctataagaagcttctgcatgatcttattgttcagagtttactcagacttaaagagccttctgtcttactgcgttgccggaaagatgatgtaaacctggtggaagatgtactagatgcagtaaaggaggagtatgcagagaaggcaatggtccacacacctgagatcataattgaccacatccatcttccaccagccccatctcatcataatgcgcatggtccttcttgttctggaggagtggtactggcttctcgagatgggaaaattgtgtgtgagaacactctagatgccagattggaagttgtgttccgtaaaaagctacccgagatccgcaagtgtctatttagtggcattgctgtctgaggggctggaagttgatctatatttatcacctgtctcaaattctgagataggctattcagctgataattatataatcatctaaaggcttgcctggatacaatttcttatctaaaagacttactctgccccatttttctgatactaaattcccaggccgtggttaagtaaaaaaaaaaaaaaaaaaaaaaattcgcggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="37043" stop="43895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37343" g_stop="37545" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37546" i_stop="37639" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37640" g_stop="37740" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="304" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37741" i_stop="38449" i_length="709">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38450" g_stop="38603" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="458" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38604" i_stop="41601" i_length="2998">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41602" g_stop="41795" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="652" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41796" i_stop="41867" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41868" g_stop="41967" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="752" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41968" i_stop="43391" i_length="1424">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43392" g_stop="43581" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="941" r_length="189" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="955" polyA_stop="978"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E698166" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>942</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37343" e_stop="37545"/>
          <exon e_start="37640" e_stop="37740"/>
          <exon e_start="38450" e_stop="38603"/>
          <exon e_start="41602" e_stop="41795"/>
          <exon e_start="41868" e_stop="41967"/>
          <exon e_start="43392" e_stop="43581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTTGCTCATCCAAAAATCTCCATTTCATCGGAAAACGAAGATCGGAGCTTTCGATTAAATCAATTCGTTTTGCCGTTCGATCCTTCCCGATCTCAAAATGAACGACGGAGATGTGTCCAAGCAGATCCATCAGATGGTCAGATTCATCCGCCAAGAAGCGGAGGAGAAGGCCAATGAGATTTCTGTTTCCGCTGAAGAAGTATGAAAATCATGTTCTAATTTTGAATTTAGAAGTGAATTTAGTTGAATTTTATCTCATGTGTTATGCATTGGCTGTGGTTTTTGTTTGTTAGGAATTCAACATTGAGAAGTTGCAGTTAGTGGAAGCGGAGAAGAAGAAGATTAGACTGGAATACGAGCGTAAAGAGAAACAAGTTGACGTTCGTAAGAAAATGTGATTTTTCTATTTTGCTCTGATTTGTGACTGTGATTAAATTTGAGATTTTTCGAAGATTTTGTTTATAAATGTTGCTCTTTATAGAAGAAGAGTTAAAGTTCAAAACTCCGCGTGAGAATTTGACATTTTGCTTCCACATATTGCTTATCAAATGATAGTAAAATGAGGTTAATAGAAGATATTCAAAAGATGTTATACTATCAACTACAATAGATAACTTTTGATTTGGCATGACGACTTTGTATTCATCCGAAACAATATAATTTTTAATTGCACTTGAAATTTTCACTTTTAGACTTAAAATCAAGTCTGAATCACACATTCTTTGTGTTCCATAGTGTCGACTAGATAAAAGAATTGCGTACACGTTAACTGATTACCACTATCATTTACTGGATATTTAGGATTCAATGTTTGCAACTCATTCTGTTTCTGCTTTCAGCAATAATATCTTTATGTTTAACATCAATTCATGTAGGACAAAGTGATTTCAAACCGAATTTGAACATATTACTGTGTGTGTTAATCTTGTTTCCTTCTTTTATTTTCAAATTAGCCACACGGTTAAATGACATTTGATTTCATAGTGATGTCCGTTTTGAAGTTGACCAAATCCTGTTAAATTACTTTTCAAAAACATTATCTAATTTCAACTTTATTGGGCCAACATAGTCTTTGACTTTCTTTTGTTATGCATTTCTTGCAGAGAGTACTCCATGCAACTCAATGCCTCTCGGATCAAAGTTCTTCAAGCTCAGGATGACTTGATTAGCTCCATGGAGGAAACAGCAGCAAAGGAGATCTTACATGTTAGCAACCACCATAGCTATAAGAAGCTTCTGCATGATCTTATTGTTCAGGTACTTTTGACTAATAATAATCCATGCGATTTTGTTCTTTGCTTCTAGATTTTCTGAGACAAATTATCAGAACTCGAAAATTAATAGGTTTATTTTACAAAAGACAAGCTATTCATCAGATTATCATCAATATCTTCAGTTGCTATGGTGTTGTACTTATATTTCTGCTCTGCTGTATACCAGATTATGAATTATTATTTAGTTTTGTTACAACAAAAGTACGGAGTAATTTCTATGTTAAGTATCCAAGGAATACAATGATTTAGATATAGGAAAAGAAAAGACTAAGTTAACTTGATATCTTAATCCATAAAAATCAGCTAGAATACTACATACAAGGAAAGATATAACTTTATTATTCTCTAATACTCCCCTCAAGCTAGAGCATAGATATTGATCATAGCTTGTTACAAAGGTAATAAACTTGAGTTCCATTTAATGCTTTTGTGAACAAAACAGCTAGTTAACATTTTACTTTTGTTGGTGCGATGTTTTTCCAGACATTTTCCCATAAACCTTGTTGTTTTTTGTTTTGGTGTGTATTAATTGTTACATAGACCCATTTAACAAATAAAAGCCCACCCTTTTTGTTCTTCCATCTCATAGAGTCTGGAGCTGAAGTAGTTTCAGTGAAGTCCCCTATTTCATGGAGTAGGTAGGGCACTCTATCCTCTTCCCAATCGTTCGAGAATCTATTAAAAGATAGATCCCATCCCAGTTCAGTCCAACACTCTTTGACAGTTGCTTCAAGGTTGTTACATATGGTGAATAGGTTTGGAAAAATATCTTTCAGAGGGATCTAGTTGTTCTAACTTTAACTGTGAATACCCACTTACATTCCATTGATTTCTTTCCCTTGGGTTAATTCACCAATCCCATGTGTGATTTTCATCTAAGGCGTGTATTTCATCAAGCATTGCATTAGACCATCTAGGATGATTCAAAGTCTCTTTCGCTATTTTGGGTACATAGACAGAGTCTAGAGAGGCAATCATAGATCCAGACGTTGAGTATAAGCCATCATAGGAAACATAATTAGCAATGGAATATGTGGATTTGCAACTATGAGTACCTTTGCGAAGAGCAATAGGGAGGTCATGATTTTCTGTAAGATCTCATGGCATGTGGATTGTTGTAGGGCATGTATCATTGGTCTCTCTCTTCCTTGAGTAAACTTGAACAACAAGTGGTCTTACTACCGCAGATGGAGTAGGAATTGATTGGACAATAGTCGATTGATCCTCGATAAAATAACTCGGAAATGGAGAGACAACATTTGATTTTTCTGTCAAAATACGGGTAACCTAATAGACTAACCACTCATCTTCCTCCTCCTAAATTGTAGAAATTGGAGGTACATAGAAAATGATGTAGACTCCGAAAATGCCACACTGATTGACACCAAATATCTGTGAAGTTTAGTAGAATTACACTGACACTCCTTTTGAAGGCGAGAATAACCTTAAAAAATGTACTTCAATGCCTTTGGATCCAACTTGGTAACAAATGGTCGAGCATCTCGAACATGACATGTGCATCCAAATACTTTAGGTTCCACCAAAAAGTGACTTGTTTGGAAAAAGAACACTATAAGGCATATTATTAGCAAGCATAATAGATGACATGCGATTAGCAAGAAAGCAAGTTGTAGAGATCGCAAGTCGAGCTGTCTCAAGTAGATGTCTATCCGTTCTCTCAACAACTCCATGTTGAGAGGGTGTAGCAACACATGAAGACTGCTGAAGAATACTATGTTGTCTCATATGACTGAAATATTCCTGACATATATTCTTTAGCATTGTCATTTCTTAGAATACGTATCGAAGCATTGAATTGAGTTTTGATTCAATACAGAAGGCACAAAAGTGAGTAAACACTTCTAAGTGACTTGGACTCTGAATAACTATTAAGTTATTTATTCTATGAATAGTTGTTCTGAAGTGTTCACTCATTTTTGTTGCCGAAATCTAAACTCAATTCAATGCTTCCGTACGTATTTTAAGAAGTGACTATGACAACACGATACTCTTCATATGTTGATACACCTTCTCAAACGGTGTTGCTGAGAGGATGGACATCTACTTAGGACAGCTGGGGCACTTCTGTTCCAAATGAAAGTTCCTAAACAATTTTGGACAAATGCGATTTCTACAACTTGTTTTCTGTTGAATTGCATGCCATCTAGTGTGGTTGTTGGTAATTTTCTTTTTCAAACATGTCACTATTTCCATATGAACCTAAGGTGTTTGGAAGCACATGTTATGTTCAACGATCTGTTCTAAAGTTTGATTAGAAGCAGTAAAGTGTGTTTTTCTAGGCTATTCTCATCTCCAAAGAGGTTATCGATGTTATTTTACTGTACATGGAAGATACTTGGTATCCAGTAGAGTGGTGTTTTCAGAGACTACACCATTCTTCTATGCACTTCCTAATCAGTGGGAAGGGGAAGAGGAATGGTTAGTCTATTAGGTTACTCGTGCTTCGACAACACATCAAATGATATTGTTCATCCATCTTCTGGTCCTTCTATTGAGCACCAATCGTGTAGTGTGCCTTCATTACCTGCTCCATCTGTGATAGCCAGGTCGCAAATTACTCAAGGAGGCAAGAGAATCATGATACATGTCCTGCACCAAATCCTTCGTCATCGGATCCAGACTGCTGGTTAGAATGTTAAGGTTATAGGAGACACGGTTGCAGTTCTAGATACCATAGGAGTAATTTGGTTGCTGTTAGAAAGAATTTGTGTTTCTTTCCTCTATCCTCTTCAATGGAATCCTGAGGTTTCCATATGTTCAATGCAATATGATCTTTCTTTTTCTTTGTAAGACCCTTGTTTCTTGTGCTATCTCCAAAACACGATATAATGATTAACAGCTAAATTATTTGCTAATTTATGTTGTCTATAGCCACAATGGGCTTTACTGTCTATGTGCCCTTTTGAACTAATTTTGCTGTTTTGTTTGGGAATAAGATGGGTACTACTCTTTGATTGTAGAGTTTACTCAGACTTAAAGAGCCTTCTGTCTTACTGCGTTGCCGGAAAGATGATGTAAACCTGGTGGAAGATGTACTAGATGCAGTAAAGGAGGAGTATGCAGAGAAGGCAATGGTCCACACACCTGAGATCATAATTGACCACATCCATCTTCCACCAGCCCCATCTCATCATAATGCGCATGGTCCTTCTTGGTAAGTGACTTCATATATGTCTGCAATGCTAAGTAGCTCCTCTTCGTAATTCATCTATCTCTATCCCGACAGTTCTGGAGGAGTGGTACTGGCTTCTCGAGATGGGAAAATTGTGTGTGAGAACACTCTAGATGCCAGATTGGAAGTTGTGTTCCGTAAAAAGCTACCCGAGGTACTTGCTTTTGTGCTTAGCTCCATACTTCTCATGATTGTGTTCTTCTCTTCCCAATTTTCTTGTTTCCTTGCACCAATATTGATACAATTGTGGTCCTTTTGCTGAGTTACACTGCCTATTTCAAGTGTCATGCATCCCTTGTCATTTTACAAATGTCATCTGGATGAATTAAGCGTCACATGTTCATTACCTATTAAAAAGATCATCTTTACAGGCCTTTTTTGGGGTGGGGGGAAATAGGCATTGTTGATACTTACAGGCTACAGCTGCTGTTTTTGCTGTCCTCCATAAAATTATTTTACATGTCAAGTCAATGGCTCTTTTGTACTTCGTACCTTGTTGCGTAAGCATCTCCAATAAGCTCCTTTGCTATTGTTTTTGTTACTGCACTTTGACATTTTGAGTTGTGGTGATGTCTGTTGCTTCTAGTCTTTGTTGAGACTAATTTATGGAAACTTCAATATCCATTTCCCTTTGGGGTAGCAAGAACATATTATGACGAGGTTAGTGATAGATGAAAGTGAAGATGGACTTAAAATAACTGGACATACCAGTCACCAGTAATATGAGTATAAAAACGAGAAAATGACCAAAATGGTCCTTAATGGGTGGGTAATGCTTTATTTAGGTCCATAATATATTTCAGTTGATTGAAATGGTCGTTAATCTATAAGAAAGGTGTTCATTTTGGTCCTTAATATATTTCAGTTGATTGAAATGGTCCTTAATGTATAACAAAATGTGGTCATTTTGGTCCTTTACGTTAAATCTAACAGATTTATTAAAAAAAAGTGCTAAATTTAACTATGAACCCTTCGTGGCCAACAATATTTACTATTGTTGTCTTCTTTGTTAGCTCCAAAGAAAGAACTCCACAAAATCAAATACCATTCTCTCTTTTCCCCAACAAAATTTTCCATTTTCTCTTTCCTAAAATATTACTCCACTGGTCTAATACTGATTTCTATTTTAAGCTAGAGAAAATAGTAAATTTTGTTAGAGAAAGTAGAGAGAATGTTTTTAGATTTCATGGTGAAATTTTTTGGAGCTAACTAAGCAAACAACAATGGTAGATCTTGTCAGCCACGTGGGATCCACAGTTAAGTTTAACACTTGTATTTCTATAAATATGTTAGGTTTGGGATAAATGATCAGAATGAACACAGTTATTGTATGTTAAGGACCTATTTCAATCAAGTGAAATACATTAAGTTCCAAAATAAAGCAGGACCATTTGGTTATTTTCACTCCAGAAACAGTCATTGTAGAATTGTAGTAGAGGTTGCTGTTGCTTCCTCTGTCATTGTGATTGAGTCCATCAAACAAGTCCTGCTGCTTCCATCAATTTTGCAGATTTCATAATTGCTTTTCGATGGTTCCCAAGAACTCTCTTTGCTTAGTTTCTCTCCTAAATATTGCAGATCCGCAAGTGTCTATTTAGTGGCATTGCTGTCTGAGGGGCTGGAAGTTGATCTATATTTATCACCTGTCTCAGATTCTGAGATAGGCTATTCAGCTGATAAATTATATAATCATCTAAAGGCTTGCTTGTATACAATTTCTTATCTAAAAGACATACTCTGCCCAGTTTTTCTGATACTAAATTCCCAG</genome_strand>
        <mrna_strand>GGAGTTTGCTCATCCAAAAATCTCCATTTCATCGGAAAACGAAGATCGGAGCTTTCGATTAAATCAATTCGTTTTGCCGTTCGATCCTTCCCGATCTCAAAATGAACGACGGAGATGTGTCCAAGCAGATCCATCAGATGGTCAGATTCATCCGCCAAGAAGCGGAGGAGAAGGCCAATGAGATTTCTGTTTCCGCTGAAGAA..............................................................................................GAATTCAACATTGAGAAGTTGCAGTTAGTGGAAGCGGAGAAGAAGAAGATTAGACTGGAATACGAGCGTAAAGAGAAACAAGTTGACGTTCGTAAGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTACTCCATGCAACTCAATGCCTCTCGGATCAAAGTTCTTCAAGCTCAGGATGACTTGATTAGCTCCATGGAGGAAACAGCAGCAAAGGAGATCTTACATGTTAGCAACCACCATAGCTATAAGAAGCTTCTGCATGATCTTATTGTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTACTCAGACTTAAAGAGCCTTCTGTCTTACTGCGTTGCCGGAAAGATGATGTAAACCTGGTGGAAGATGTACTAGATGCAGTAAAGGAGGAGTATGCAGAGAAGGCAATGGTCCACACACCTGAGATCATAATTGACCACATCCATCTTCCACCAGCCCCATCTCATCATAATGCGCATGGTCCTTCTTG........................................................................TTCTGGAGGAGTGGTACTGGCTTCTCGAGATGGGAAAATTGTGTGTGAGAACACTCTAGATGCCAGATTGGAAGTTGTGTTCCGTAAAAAGCTACCCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCAAGTGTCTATTTAGTGGCATTGCTGTCTGAGGGGCTGGAAGTTGATCTATATTTATCACCTGTCTCAAATTCTGAGATAGGCTATTCAGCTGAT-AATTATATAATCATCTAAAGGCTTGCCTGGATACAATTTCTTATCTAAAAGACTTACTCTGCCCCATTTTTCTGATACTAAATTCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745859" ref_strand="+" ref_description="SGN-E745859 [GI|47104957]">
      <seq>gatccaaaaatctccatttcatcggaaaacgaagatcggagctttcgattaaatcaattcgttttgccgttcgatccttcccgatctcaaaatgaacgacggagatgtgtccaagcagatccatcagatggtcagattcatccgccaagaagcggaggagaaggccaatgagatttctgtttccgctgaagaagaattcaacattgagaagttgcagttagtggaagcggagaagaagaagattagactggaatacgagcgtaaagagaaacaagttgacgttcgtaagaaaatagagtactccatgcaactcaatgcctctcggatcaaagttcttcaagctcaggatgacttgattagctccatggaggaaacagcagcaaaggagatcttacatgttagcaaccaccatagctataagaagcttctgcatgatcttattgttcagagtttactcagacttaaagagccttctgtcttactgcgttgccggaaagatgatgtaaacctggtggaagatgtactagatgcagtaaaggaggagtatgcagagaaggcaatggtccacacacctgagatcataattgaccacatccatcttccaccagccccatctcatcataatgcgcatggtccttcttgttctggaggagtggtactggcttctcgagatgggaaaattgtgtgtgagaacactctagatgccagattggaagttgtgttccgtaaaaagctacccgagatccgcaagtgtctatttagtggcattgctgtctgaggggctggaagttgatctatatttatcacccgtctcagattctgagataggctattcagctgataaattatataatcatctaaaggcttgcttgtatacaatttcttatctaaaagacatactctgcccagtttttctgatacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="37054" stop="43874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37353" g_stop="37545" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37546" i_stop="37639" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37640" g_stop="37740" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="294" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37741" i_stop="38449" i_length="709">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38450" g_stop="38603" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="448" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38604" i_stop="41601" i_length="2998">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41602" g_stop="41795" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="642" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41796" i_stop="41867" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41868" g_stop="41967" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="742" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41968" i_stop="43391" i_length="1424">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43392" g_stop="43573" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="924" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="43574" i_stop="43689" i_length="116">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.804" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43690" g_stop="43701" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="925" r_stop="936" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E745859" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>936</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37353" e_stop="37545"/>
          <exon e_start="37640" e_stop="37740"/>
          <exon e_start="38450" e_stop="38603"/>
          <exon e_start="41602" e_stop="41795"/>
          <exon e_start="41868" e_stop="41967"/>
          <exon e_start="43392" e_stop="43573"/>
          <exon e_start="43690" e_stop="43701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCAAAAATCTCCATTTCATCGGAAAACGAAGATCGGAGCTTTCGATTAAATCAATTCGTTTTGCCGTTCGATCCTTCCCGATCTCAAAATGAACGACGGAGATGTGTCCAAGCAGATCCATCAGATGGTCAGATTCATCCGCCAAGAAGCGGAGGAGAAGGCCAATGAGATTTCTGTTTCCGCTGAAGAAGTATGAAAATCATGTTCTAATTTTGAATTTAGAAGTGAATTTAGTTGAATTTTATCTCATGTGTTATGCATTGGCTGTGGTTTTTGTTTGTTAGGAATTCAACATTGAGAAGTTGCAGTTAGTGGAAGCGGAGAAGAAGAAGATTAGACTGGAATACGAGCGTAAAGAGAAACAAGTTGACGTTCGTAAGAAAATGTGATTTTTCTATTTTGCTCTGATTTGTGACTGTGATTAAATTTGAGATTTTTCGAAGATTTTGTTTATAAATGTTGCTCTTTATAGAAGAAGAGTTAAAGTTCAAAACTCCGCGTGAGAATTTGACATTTTGCTTCCACATATTGCTTATCAAATGATAGTAAAATGAGGTTAATAGAAGATATTCAAAAGATGTTATACTATCAACTACAATAGATAACTTTTGATTTGGCATGACGACTTTGTATTCATCCGAAACAATATAATTTTTAATTGCACTTGAAATTTTCACTTTTAGACTTAAAATCAAGTCTGAATCACACATTCTTTGTGTTCCATAGTGTCGACTAGATAAAAGAATTGCGTACACGTTAACTGATTACCACTATCATTTACTGGATATTTAGGATTCAATGTTTGCAACTCATTCTGTTTCTGCTTTCAGCAATAATATCTTTATGTTTAACATCAATTCATGTAGGACAAAGTGATTTCAAACCGAATTTGAACATATTACTGTGTGTGTTAATCTTGTTTCCTTCTTTTATTTTCAAATTAGCCACACGGTTAAATGACATTTGATTTCATAGTGATGTCCGTTTTGAAGTTGACCAAATCCTGTTAAATTACTTTTCAAAAACATTATCTAATTTCAACTTTATTGGGCCAACATAGTCTTTGACTTTCTTTTGTTATGCATTTCTTGCAGAGAGTACTCCATGCAACTCAATGCCTCTCGGATCAAAGTTCTTCAAGCTCAGGATGACTTGATTAGCTCCATGGAGGAAACAGCAGCAAAGGAGATCTTACATGTTAGCAACCACCATAGCTATAAGAAGCTTCTGCATGATCTTATTGTTCAGGTACTTTTGACTAATAATAATCCATGCGATTTTGTTCTTTGCTTCTAGATTTTCTGAGACAAATTATCAGAACTCGAAAATTAATAGGTTTATTTTACAAAAGACAAGCTATTCATCAGATTATCATCAATATCTTCAGTTGCTATGGTGTTGTACTTATATTTCTGCTCTGCTGTATACCAGATTATGAATTATTATTTAGTTTTGTTACAACAAAAGTACGGAGTAATTTCTATGTTAAGTATCCAAGGAATACAATGATTTAGATATAGGAAAAGAAAAGACTAAGTTAACTTGATATCTTAATCCATAAAAATCAGCTAGAATACTACATACAAGGAAAGATATAACTTTATTATTCTCTAATACTCCCCTCAAGCTAGAGCATAGATATTGATCATAGCTTGTTACAAAGGTAATAAACTTGAGTTCCATTTAATGCTTTTGTGAACAAAACAGCTAGTTAACATTTTACTTTTGTTGGTGCGATGTTTTTCCAGACATTTTCCCATAAACCTTGTTGTTTTTTGTTTTGGTGTGTATTAATTGTTACATAGACCCATTTAACAAATAAAAGCCCACCCTTTTTGTTCTTCCATCTCATAGAGTCTGGAGCTGAAGTAGTTTCAGTGAAGTCCCCTATTTCATGGAGTAGGTAGGGCACTCTATCCTCTTCCCAATCGTTCGAGAATCTATTAAAAGATAGATCCCATCCCAGTTCAGTCCAACACTCTTTGACAGTTGCTTCAAGGTTGTTACATATGGTGAATAGGTTTGGAAAAATATCTTTCAGAGGGATCTAGTTGTTCTAACTTTAACTGTGAATACCCACTTACATTCCATTGATTTCTTTCCCTTGGGTTAATTCACCAATCCCATGTGTGATTTTCATCTAAGGCGTGTATTTCATCAAGCATTGCATTAGACCATCTAGGATGATTCAAAGTCTCTTTCGCTATTTTGGGTACATAGACAGAGTCTAGAGAGGCAATCATAGATCCAGACGTTGAGTATAAGCCATCATAGGAAACATAATTAGCAATGGAATATGTGGATTTGCAACTATGAGTACCTTTGCGAAGAGCAATAGGGAGGTCATGATTTTCTGTAAGATCTCATGGCATGTGGATTGTTGTAGGGCATGTATCATTGGTCTCTCTCTTCCTTGAGTAAACTTGAACAACAAGTGGTCTTACTACCGCAGATGGAGTAGGAATTGATTGGACAATAGTCGATTGATCCTCGATAAAATAACTCGGAAATGGAGAGACAACATTTGATTTTTCTGTCAAAATACGGGTAACCTAATAGACTAACCACTCATCTTCCTCCTCCTAAATTGTAGAAATTGGAGGTACATAGAAAATGATGTAGACTCCGAAAATGCCACACTGATTGACACCAAATATCTGTGAAGTTTAGTAGAATTACACTGACACTCCTTTTGAAGGCGAGAATAACCTTAAAAAATGTACTTCAATGCCTTTGGATCCAACTTGGTAACAAATGGTCGAGCATCTCGAACATGACATGTGCATCCAAATACTTTAGGTTCCACCAAAAAGTGACTTGTTTGGAAAAAGAACACTATAAGGCATATTATTAGCAAGCATAATAGATGACATGCGATTAGCAAGAAAGCAAGTTGTAGAGATCGCAAGTCGAGCTGTCTCAAGTAGATGTCTATCCGTTCTCTCAACAACTCCATGTTGAGAGGGTGTAGCAACACATGAAGACTGCTGAAGAATACTATGTTGTCTCATATGACTGAAATATTCCTGACATATATTCTTTAGCATTGTCATTTCTTAGAATACGTATCGAAGCATTGAATTGAGTTTTGATTCAATACAGAAGGCACAAAAGTGAGTAAACACTTCTAAGTGACTTGGACTCTGAATAACTATTAAGTTATTTATTCTATGAATAGTTGTTCTGAAGTGTTCACTCATTTTTGTTGCCGAAATCTAAACTCAATTCAATGCTTCCGTACGTATTTTAAGAAGTGACTATGACAACACGATACTCTTCATATGTTGATACACCTTCTCAAACGGTGTTGCTGAGAGGATGGACATCTACTTAGGACAGCTGGGGCACTTCTGTTCCAAATGAAAGTTCCTAAACAATTTTGGACAAATGCGATTTCTACAACTTGTTTTCTGTTGAATTGCATGCCATCTAGTGTGGTTGTTGGTAATTTTCTTTTTCAAACATGTCACTATTTCCATATGAACCTAAGGTGTTTGGAAGCACATGTTATGTTCAACGATCTGTTCTAAAGTTTGATTAGAAGCAGTAAAGTGTGTTTTTCTAGGCTATTCTCATCTCCAAAGAGGTTATCGATGTTATTTTACTGTACATGGAAGATACTTGGTATCCAGTAGAGTGGTGTTTTCAGAGACTACACCATTCTTCTATGCACTTCCTAATCAGTGGGAAGGGGAAGAGGAATGGTTAGTCTATTAGGTTACTCGTGCTTCGACAACACATCAAATGATATTGTTCATCCATCTTCTGGTCCTTCTATTGAGCACCAATCGTGTAGTGTGCCTTCATTACCTGCTCCATCTGTGATAGCCAGGTCGCAAATTACTCAAGGAGGCAAGAGAATCATGATACATGTCCTGCACCAAATCCTTCGTCATCGGATCCAGACTGCTGGTTAGAATGTTAAGGTTATAGGAGACACGGTTGCAGTTCTAGATACCATAGGAGTAATTTGGTTGCTGTTAGAAAGAATTTGTGTTTCTTTCCTCTATCCTCTTCAATGGAATCCTGAGGTTTCCATATGTTCAATGCAATATGATCTTTCTTTTTCTTTGTAAGACCCTTGTTTCTTGTGCTATCTCCAAAACACGATATAATGATTAACAGCTAAATTATTTGCTAATTTATGTTGTCTATAGCCACAATGGGCTTTACTGTCTATGTGCCCTTTTGAACTAATTTTGCTGTTTTGTTTGGGAATAAGATGGGTACTACTCTTTGATTGTAGAGTTTACTCAGACTTAAAGAGCCTTCTGTCTTACTGCGTTGCCGGAAAGATGATGTAAACCTGGTGGAAGATGTACTAGATGCAGTAAAGGAGGAGTATGCAGAGAAGGCAATGGTCCACACACCTGAGATCATAATTGACCACATCCATCTTCCACCAGCCCCATCTCATCATAATGCGCATGGTCCTTCTTGGTAAGTGACTTCATATATGTCTGCAATGCTAAGTAGCTCCTCTTCGTAATTCATCTATCTCTATCCCGACAGTTCTGGAGGAGTGGTACTGGCTTCTCGAGATGGGAAAATTGTGTGTGAGAACACTCTAGATGCCAGATTGGAAGTTGTGTTCCGTAAAAAGCTACCCGAGGTACTTGCTTTTGTGCTTAGCTCCATACTTCTCATGATTGTGTTCTTCTCTTCCCAATTTTCTTGTTTCCTTGCACCAATATTGATACAATTGTGGTCCTTTTGCTGAGTTACACTGCCTATTTCAAGTGTCATGCATCCCTTGTCATTTTACAAATGTCATCTGGATGAATTAAGCGTCACATGTTCATTACCTATTAAAAAGATCATCTTTACAGGCCTTTTTTGGGGTGGGGGGAAATAGGCATTGTTGATACTTACAGGCTACAGCTGCTGTTTTTGCTGTCCTCCATAAAATTATTTTACATGTCAAGTCAATGGCTCTTTTGTACTTCGTACCTTGTTGCGTAAGCATCTCCAATAAGCTCCTTTGCTATTGTTTTTGTTACTGCACTTTGACATTTTGAGTTGTGGTGATGTCTGTTGCTTCTAGTCTTTGTTGAGACTAATTTATGGAAACTTCAATATCCATTTCCCTTTGGGGTAGCAAGAACATATTATGACGAGGTTAGTGATAGATGAAAGTGAAGATGGACTTAAAATAACTGGACATACCAGTCACCAGTAATATGAGTATAAAAACGAGAAAATGACCAAAATGGTCCTTAATGGGTGGGTAATGCTTTATTTAGGTCCATAATATATTTCAGTTGATTGAAATGGTCGTTAATCTATAAGAAAGGTGTTCATTTTGGTCCTTAATATATTTCAGTTGATTGAAATGGTCCTTAATGTATAACAAAATGTGGTCATTTTGGTCCTTTACGTTAAATCTAACAGATTTATTAAAAAAAAGTGCTAAATTTAACTATGAACCCTTCGTGGCCAACAATATTTACTATTGTTGTCTTCTTTGTTAGCTCCAAAGAAAGAACTCCACAAAATCAAATACCATTCTCTCTTTTCCCCAACAAAATTTTCCATTTTCTCTTTCCTAAAATATTACTCCACTGGTCTAATACTGATTTCTATTTTAAGCTAGAGAAAATAGTAAATTTTGTTAGAGAAAGTAGAGAGAATGTTTTTAGATTTCATGGTGAAATTTTTTGGAGCTAACTAAGCAAACAACAATGGTAGATCTTGTCAGCCACGTGGGATCCACAGTTAAGTTTAACACTTGTATTTCTATAAATATGTTAGGTTTGGGATAAATGATCAGAATGAACACAGTTATTGTATGTTAAGGACCTATTTCAATCAAGTGAAATACATTAAGTTCCAAAATAAAGCAGGACCATTTGGTTATTTTCACTCCAGAAACAGTCATTGTAGAATTGTAGTAGAGGTTGCTGTTGCTTCCTCTGTCATTGTGATTGAGTCCATCAAACAAGTCCTGCTGCTTCCATCAATTTTGCAGATTTCATAATTGCTTTTCGATGGTTCCCAAGAACTCTCTTTGCTTAGTTTCTCTCCTAAATATTGCAGATCCGCAAGTGTCTATTTAGTGGCATTGCTGTCTGAGGGGCTGGAAGTTGATCTATATTTATCACCTGTCTCAGATTCTGAGATAGGCTATTCAGCTGATAAATTATATAATCATCTAAAGGCTTGCTTGTATACAATTTCTTATCTAAAAGACATACTCTGCCCAGTTTTTCTGATACTAAATTCCCAGGTCGTGTTAAGTAATCCTTTATACTCTAGCATTAAGCTTTAATACCCTTTTCCATTATCATGATCTGCAATAAGTGTATGTTGGATGATCTGAGTTTGTTTTGTTAAGGCATAAATAAAA</genome_strand>
        <mrna_strand>GATCCAAAAATCTCCATTTCATCGGAAAACGAAGATCGGAGCTTTCGATTAAATCAATTCGTTTTGCCGTTCGATCCTTCCCGATCTCAAAATGAACGACGGAGATGTGTCCAAGCAGATCCATCAGATGGTCAGATTCATCCGCCAAGAAGCGGAGGAGAAGGCCAATGAGATTTCTGTTTCCGCTGAAGAA..............................................................................................GAATTCAACATTGAGAAGTTGCAGTTAGTGGAAGCGGAGAAGAAGAAGATTAGACTGGAATACGAGCGTAAAGAGAAACAAGTTGACGTTCGTAAGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTACTCCATGCAACTCAATGCCTCTCGGATCAAAGTTCTTCAAGCTCAGGATGACTTGATTAGCTCCATGGAGGAAACAGCAGCAAAGGAGATCTTACATGTTAGCAACCACCATAGCTATAAGAAGCTTCTGCATGATCTTATTGTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTACTCAGACTTAAAGAGCCTTCTGTCTTACTGCGTTGCCGGAAAGATGATGTAAACCTGGTGGAAGATGTACTAGATGCAGTAAAGGAGGAGTATGCAGAGAAGGCAATGGTCCACACACCTGAGATCATAATTGACCACATCCATCTTCCACCAGCCCCATCTCATCATAATGCGCATGGTCCTTCTTG........................................................................TTCTGGAGGAGTGGTACTGGCTTCTCGAGATGGGAAAATTGTGTGTGAGAACACTCTAGATGCCAGATTGGAAGTTGTGTTCCGTAAAAAGCTACCCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCAAGTGTCTATTTAGTGGCATTGCTGTCTGAGGGGCTGGAAGTTGATCTATATTTATCACCCGTCTCAGATTCTGAGATAGGCTATTCAGCTGATAAATTATATAATCATCTAAAGGCTTGCTTGTATACAATTTCTTATCTAAAAGACATACTCTGCCCAGTTTTTCTGATACAAA....................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702274" ref_strand="+" ref_description="SGN-E702274 [FA18BB02]">
      <seq>ggaaaacgaagatcggagctttcgattaaatcaattcgttttgccgttcgatccttcccgatctcaaaatgaacgacggagatgtgtccaagcagatccatcagatggtcagattcatccgccaagaagcggaggagaaggccaatgagatttctgtttccgctgaagaagaattcaacattgagaagttgcagttagtggaagcggagaagaagaagattagactggaatacgagcgtaaagagaaacaagttgacgttcgtaagaaaatagagtactccatgcaactcaatgcctctcggatcaaagttcttcaagctcaggatgacttgattagctccatgaaggaaacagcagcaaaggagatcttacatgttagcaaccaccatagctataagaagcttctgcatgatcttattgttcagagtttactcagacttaaagagccttctgtcttactgcgttgccggaaagatgatgtaaacctggtggaagatgtactagatgcagtaaaggaggagtatgcagagaaggcaatggtccacacacctgagatcataattgaccacatccatcttccaccagccccatctcatcataatgcgcatggtccttcttgttctggaggagtggtactggcttctcgagatgggaaaattgtgtgtgagaacactctagatgccagattggaagttgtgttccgtaaaaagctacccgagatccgcaagtgtctatttagtggcattgctgtctgaggggctggaagttaatctatatttatcacctgtctcagattctgagataggctattcagctgataaattatataatcatctaaaggcttgcttgtatacaatttcttatctaaaagacatactctgcccagtttttctgatactaaagtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="37076" stop="43878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37376" g_stop="37545" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37546" i_stop="37639" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37640" g_stop="37740" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="271" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37741" i_stop="38449" i_length="709">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38450" g_stop="38603" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="425" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38604" i_stop="41601" i_length="2998">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41602" g_stop="41795" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="619" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41796" i_stop="41867" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41868" g_stop="41967" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="719" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41968" i_stop="43391" i_length="1424">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43392" g_stop="43578" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="906" r_length="187" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E702274" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37376" e_stop="37545"/>
          <exon e_start="37640" e_stop="37740"/>
          <exon e_start="38450" e_stop="38603"/>
          <exon e_start="41602" e_stop="41795"/>
          <exon e_start="41868" e_stop="41967"/>
          <exon e_start="43392" e_stop="43578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAACGAAGATCGGAGCTTTCGATTAAATCAATTCGTTTTGCCGTTCGATCCTTCCCGATCTCAAAATGAACGACGGAGATGTGTCCAAGCAGATCCATCAGATGGTCAGATTCATCCGCCAAGAAGCGGAGGAGAAGGCCAATGAGATTTCTGTTTCCGCTGAAGAAGTATGAAAATCATGTTCTAATTTTGAATTTAGAAGTGAATTTAGTTGAATTTTATCTCATGTGTTATGCATTGGCTGTGGTTTTTGTTTGTTAGGAATTCAACATTGAGAAGTTGCAGTTAGTGGAAGCGGAGAAGAAGAAGATTAGACTGGAATACGAGCGTAAAGAGAAACAAGTTGACGTTCGTAAGAAAATGTGATTTTTCTATTTTGCTCTGATTTGTGACTGTGATTAAATTTGAGATTTTTCGAAGATTTTGTTTATAAATGTTGCTCTTTATAGAAGAAGAGTTAAAGTTCAAAACTCCGCGTGAGAATTTGACATTTTGCTTCCACATATTGCTTATCAAATGATAGTAAAATGAGGTTAATAGAAGATATTCAAAAGATGTTATACTATCAACTACAATAGATAACTTTTGATTTGGCATGACGACTTTGTATTCATCCGAAACAATATAATTTTTAATTGCACTTGAAATTTTCACTTTTAGACTTAAAATCAAGTCTGAATCACACATTCTTTGTGTTCCATAGTGTCGACTAGATAAAAGAATTGCGTACACGTTAACTGATTACCACTATCATTTACTGGATATTTAGGATTCAATGTTTGCAACTCATTCTGTTTCTGCTTTCAGCAATAATATCTTTATGTTTAACATCAATTCATGTAGGACAAAGTGATTTCAAACCGAATTTGAACATATTACTGTGTGTGTTAATCTTGTTTCCTTCTTTTATTTTCAAATTAGCCACACGGTTAAATGACATTTGATTTCATAGTGATGTCCGTTTTGAAGTTGACCAAATCCTGTTAAATTACTTTTCAAAAACATTATCTAATTTCAACTTTATTGGGCCAACATAGTCTTTGACTTTCTTTTGTTATGCATTTCTTGCAGAGAGTACTCCATGCAACTCAATGCCTCTCGGATCAAAGTTCTTCAAGCTCAGGATGACTTGATTAGCTCCATGGAGGAAACAGCAGCAAAGGAGATCTTACATGTTAGCAACCACCATAGCTATAAGAAGCTTCTGCATGATCTTATTGTTCAGGTACTTTTGACTAATAATAATCCATGCGATTTTGTTCTTTGCTTCTAGATTTTCTGAGACAAATTATCAGAACTCGAAAATTAATAGGTTTATTTTACAAAAGACAAGCTATTCATCAGATTATCATCAATATCTTCAGTTGCTATGGTGTTGTACTTATATTTCTGCTCTGCTGTATACCAGATTATGAATTATTATTTAGTTTTGTTACAACAAAAGTACGGAGTAATTTCTATGTTAAGTATCCAAGGAATACAATGATTTAGATATAGGAAAAGAAAAGACTAAGTTAACTTGATATCTTAATCCATAAAAATCAGCTAGAATACTACATACAAGGAAAGATATAACTTTATTATTCTCTAATACTCCCCTCAAGCTAGAGCATAGATATTGATCATAGCTTGTTACAAAGGTAATAAACTTGAGTTCCATTTAATGCTTTTGTGAACAAAACAGCTAGTTAACATTTTACTTTTGTTGGTGCGATGTTTTTCCAGACATTTTCCCATAAACCTTGTTGTTTTTTGTTTTGGTGTGTATTAATTGTTACATAGACCCATTTAACAAATAAAAGCCCACCCTTTTTGTTCTTCCATCTCATAGAGTCTGGAGCTGAAGTAGTTTCAGTGAAGTCCCCTATTTCATGGAGTAGGTAGGGCACTCTATCCTCTTCCCAATCGTTCGAGAATCTATTAAAAGATAGATCCCATCCCAGTTCAGTCCAACACTCTTTGACAGTTGCTTCAAGGTTGTTACATATGGTGAATAGGTTTGGAAAAATATCTTTCAGAGGGATCTAGTTGTTCTAACTTTAACTGTGAATACCCACTTACATTCCATTGATTTCTTTCCCTTGGGTTAATTCACCAATCCCATGTGTGATTTTCATCTAAGGCGTGTATTTCATCAAGCATTGCATTAGACCATCTAGGATGATTCAAAGTCTCTTTCGCTATTTTGGGTACATAGACAGAGTCTAGAGAGGCAATCATAGATCCAGACGTTGAGTATAAGCCATCATAGGAAACATAATTAGCAATGGAATATGTGGATTTGCAACTATGAGTACCTTTGCGAAGAGCAATAGGGAGGTCATGATTTTCTGTAAGATCTCATGGCATGTGGATTGTTGTAGGGCATGTATCATTGGTCTCTCTCTTCCTTGAGTAAACTTGAACAACAAGTGGTCTTACTACCGCAGATGGAGTAGGAATTGATTGGACAATAGTCGATTGATCCTCGATAAAATAACTCGGAAATGGAGAGACAACATTTGATTTTTCTGTCAAAATACGGGTAACCTAATAGACTAACCACTCATCTTCCTCCTCCTAAATTGTAGAAATTGGAGGTACATAGAAAATGATGTAGACTCCGAAAATGCCACACTGATTGACACCAAATATCTGTGAAGTTTAGTAGAATTACACTGACACTCCTTTTGAAGGCGAGAATAACCTTAAAAAATGTACTTCAATGCCTTTGGATCCAACTTGGTAACAAATGGTCGAGCATCTCGAACATGACATGTGCATCCAAATACTTTAGGTTCCACCAAAAAGTGACTTGTTTGGAAAAAGAACACTATAAGGCATATTATTAGCAAGCATAATAGATGACATGCGATTAGCAAGAAAGCAAGTTGTAGAGATCGCAAGTCGAGCTGTCTCAAGTAGATGTCTATCCGTTCTCTCAACAACTCCATGTTGAGAGGGTGTAGCAACACATGAAGACTGCTGAAGAATACTATGTTGTCTCATATGACTGAAATATTCCTGACATATATTCTTTAGCATTGTCATTTCTTAGAATACGTATCGAAGCATTGAATTGAGTTTTGATTCAATACAGAAGGCACAAAAGTGAGTAAACACTTCTAAGTGACTTGGACTCTGAATAACTATTAAGTTATTTATTCTATGAATAGTTGTTCTGAAGTGTTCACTCATTTTTGTTGCCGAAATCTAAACTCAATTCAATGCTTCCGTACGTATTTTAAGAAGTGACTATGACAACACGATACTCTTCATATGTTGATACACCTTCTCAAACGGTGTTGCTGAGAGGATGGACATCTACTTAGGACAGCTGGGGCACTTCTGTTCCAAATGAAAGTTCCTAAACAATTTTGGACAAATGCGATTTCTACAACTTGTTTTCTGTTGAATTGCATGCCATCTAGTGTGGTTGTTGGTAATTTTCTTTTTCAAACATGTCACTATTTCCATATGAACCTAAGGTGTTTGGAAGCACATGTTATGTTCAACGATCTGTTCTAAAGTTTGATTAGAAGCAGTAAAGTGTGTTTTTCTAGGCTATTCTCATCTCCAAAGAGGTTATCGATGTTATTTTACTGTACATGGAAGATACTTGGTATCCAGTAGAGTGGTGTTTTCAGAGACTACACCATTCTTCTATGCACTTCCTAATCAGTGGGAAGGGGAAGAGGAATGGTTAGTCTATTAGGTTACTCGTGCTTCGACAACACATCAAATGATATTGTTCATCCATCTTCTGGTCCTTCTATTGAGCACCAATCGTGTAGTGTGCCTTCATTACCTGCTCCATCTGTGATAGCCAGGTCGCAAATTACTCAAGGAGGCAAGAGAATCATGATACATGTCCTGCACCAAATCCTTCGTCATCGGATCCAGACTGCTGGTTAGAATGTTAAGGTTATAGGAGACACGGTTGCAGTTCTAGATACCATAGGAGTAATTTGGTTGCTGTTAGAAAGAATTTGTGTTTCTTTCCTCTATCCTCTTCAATGGAATCCTGAGGTTTCCATATGTTCAATGCAATATGATCTTTCTTTTTCTTTGTAAGACCCTTGTTTCTTGTGCTATCTCCAAAACACGATATAATGATTAACAGCTAAATTATTTGCTAATTTATGTTGTCTATAGCCACAATGGGCTTTACTGTCTATGTGCCCTTTTGAACTAATTTTGCTGTTTTGTTTGGGAATAAGATGGGTACTACTCTTTGATTGTAGAGTTTACTCAGACTTAAAGAGCCTTCTGTCTTACTGCGTTGCCGGAAAGATGATGTAAACCTGGTGGAAGATGTACTAGATGCAGTAAAGGAGGAGTATGCAGAGAAGGCAATGGTCCACACACCTGAGATCATAATTGACCACATCCATCTTCCACCAGCCCCATCTCATCATAATGCGCATGGTCCTTCTTGGTAAGTGACTTCATATATGTCTGCAATGCTAAGTAGCTCCTCTTCGTAATTCATCTATCTCTATCCCGACAGTTCTGGAGGAGTGGTACTGGCTTCTCGAGATGGGAAAATTGTGTGTGAGAACACTCTAGATGCCAGATTGGAAGTTGTGTTCCGTAAAAAGCTACCCGAGGTACTTGCTTTTGTGCTTAGCTCCATACTTCTCATGATTGTGTTCTTCTCTTCCCAATTTTCTTGTTTCCTTGCACCAATATTGATACAATTGTGGTCCTTTTGCTGAGTTACACTGCCTATTTCAAGTGTCATGCATCCCTTGTCATTTTACAAATGTCATCTGGATGAATTAAGCGTCACATGTTCATTACCTATTAAAAAGATCATCTTTACAGGCCTTTTTTGGGGTGGGGGGAAATAGGCATTGTTGATACTTACAGGCTACAGCTGCTGTTTTTGCTGTCCTCCATAAAATTATTTTACATGTCAAGTCAATGGCTCTTTTGTACTTCGTACCTTGTTGCGTAAGCATCTCCAATAAGCTCCTTTGCTATTGTTTTTGTTACTGCACTTTGACATTTTGAGTTGTGGTGATGTCTGTTGCTTCTAGTCTTTGTTGAGACTAATTTATGGAAACTTCAATATCCATTTCCCTTTGGGGTAGCAAGAACATATTATGACGAGGTTAGTGATAGATGAAAGTGAAGATGGACTTAAAATAACTGGACATACCAGTCACCAGTAATATGAGTATAAAAACGAGAAAATGACCAAAATGGTCCTTAATGGGTGGGTAATGCTTTATTTAGGTCCATAATATATTTCAGTTGATTGAAATGGTCGTTAATCTATAAGAAAGGTGTTCATTTTGGTCCTTAATATATTTCAGTTGATTGAAATGGTCCTTAATGTATAACAAAATGTGGTCATTTTGGTCCTTTACGTTAAATCTAACAGATTTATTAAAAAAAAGTGCTAAATTTAACTATGAACCCTTCGTGGCCAACAATATTTACTATTGTTGTCTTCTTTGTTAGCTCCAAAGAAAGAACTCCACAAAATCAAATACCATTCTCTCTTTTCCCCAACAAAATTTTCCATTTTCTCTTTCCTAAAATATTACTCCACTGGTCTAATACTGATTTCTATTTTAAGCTAGAGAAAATAGTAAATTTTGTTAGAGAAAGTAGAGAGAATGTTTTTAGATTTCATGGTGAAATTTTTTGGAGCTAACTAAGCAAACAACAATGGTAGATCTTGTCAGCCACGTGGGATCCACAGTTAAGTTTAACACTTGTATTTCTATAAATATGTTAGGTTTGGGATAAATGATCAGAATGAACACAGTTATTGTATGTTAAGGACCTATTTCAATCAAGTGAAATACATTAAGTTCCAAAATAAAGCAGGACCATTTGGTTATTTTCACTCCAGAAACAGTCATTGTAGAATTGTAGTAGAGGTTGCTGTTGCTTCCTCTGTCATTGTGATTGAGTCCATCAAACAAGTCCTGCTGCTTCCATCAATTTTGCAGATTTCATAATTGCTTTTCGATGGTTCCCAAGAACTCTCTTTGCTTAGTTTCTCTCCTAAATATTGCAGATCCGCAAGTGTCTATTTAGTGGCATTGCTGTCTGAGGGGCTGGAAGTTGATCTATATTTATCACCTGTCTCAGATTCTGAGATAGGCTATTCAGCTGATAAATTATATAATCATCTAAAGGCTTGCTTGTATACAATTTCTTATCTAAAAGACATACTCTGCCCAGTTTTTCTGATACTAAATTCC</genome_strand>
        <mrna_strand>GGAAAACGAAGATCGGAGCTTTCGATTAAATCAATTCGTTTTGCCGTTCGATCCTTCCCGATCTCAAAATGAACGACGGAGATGTGTCCAAGCAGATCCATCAGATGGTCAGATTCATCCGCCAAGAAGCGGAGGAGAAGGCCAATGAGATTTCTGTTTCCGCTGAAGAA..............................................................................................GAATTCAACATTGAGAAGTTGCAGTTAGTGGAAGCGGAGAAGAAGAAGATTAGACTGGAATACGAGCGTAAAGAGAAACAAGTTGACGTTCGTAAGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTACTCCATGCAACTCAATGCCTCTCGGATCAAAGTTCTTCAAGCTCAGGATGACTTGATTAGCTCCATGAAGGAAACAGCAGCAAAGGAGATCTTACATGTTAGCAACCACCATAGCTATAAGAAGCTTCTGCATGATCTTATTGTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTACTCAGACTTAAAGAGCCTTCTGTCTTACTGCGTTGCCGGAAAGATGATGTAAACCTGGTGGAAGATGTACTAGATGCAGTAAAGGAGGAGTATGCAGAGAAGGCAATGGTCCACACACCTGAGATCATAATTGACCACATCCATCTTCCACCAGCCCCATCTCATCATAATGCGCATGGTCCTTCTTG........................................................................TTCTGGAGGAGTGGTACTGGCTTCTCGAGATGGGAAAATTGTGTGTGAGAACACTCTAGATGCCAGATTGGAAGTTGTGTTCCGTAAAAAGCTACCCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCAAGTGTCTATTTAGTGGCATTGCTGTCTGAGGGGCTGGAAGTTAATCTATATTTATCACCTGTCTCAGATTCTGAGATAGGCTATTCAGCTGATAAATTATATAATCATCTAAAGGCTTGCTTGTATACAATTTCTTATCTAAAAGACATACTCTGCCCAGTTTTTCTGATACTAAAGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273986" ref_strand="+" ref_description="SGN-E273986 [cLEN-8-K15]">
      <seq>aaagcagatccagcagatggtcagattcatccgtcaggaagctgaagaaaaagccaatgagatctccgtctccgccgaagaagaattcaacattgagaagttgcagctagtggaagcagagaaaaagaagatcagacaggaatacgagcgtaaggagaaacaagttgatgttcgcaagaaaattgagtactccatgcaactcaatgcctctcgaatcaaggttcttcaagctcaggatgacttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="37165" stop="38812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37464" g_stop="37545" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37546" i_stop="37639" i_length="94">
            <donor d_prob="0.993" d_score="0.80"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37640" g_stop="37740" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="183" r_length="101" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37741" i_stop="38449" i_length="709">
            <donor d_prob="0.924" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38450" g_stop="38512" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="246" r_length="63" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E273986" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37464" e_stop="37545"/>
          <exon e_start="37640" e_stop="37740"/>
          <exon e_start="38450" e_stop="38512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCAGATCCATCAGATGGTCAGATTCATCCGCCAAGAAGCGGAGGAGAAGGCCAATGAGATTTCTGTTTCCGCTGAAGAAGTATGAAAATCATGTTCTAATTTTGAATTTAGAAGTGAATTTAGTTGAATTTTATCTCATGTGTTATGCATTGGCTGTGGTTTTTGTTTGTTAGGAATTCAACATTGAGAAGTTGCAGTTAGTGGAAGCGGAGAAGAAGAAGATTAGACTGGAATACGAGCGTAAAGAGAAACAAGTTGACGTTCGTAAGAAAATGTGATTTTTCTATTTTGCTCTGATTTGTGACTGTGATTAAATTTGAGATTTTTCGAAGATTTTGTTTATAAATGTTGCTCTTTATAGAAGAAGAGTTAAAGTTCAAAACTCCGCGTGAGAATTTGACATTTTGCTTCCACATATTGCTTATCAAATGATAGTAAAATGAGGTTAATAGAAGATATTCAAAAGATGTTATACTATCAACTACAATAGATAACTTTTGATTTGGCATGACGACTTTGTATTCATCCGAAACAATATAATTTTTAATTGCACTTGAAATTTTCACTTTTAGACTTAAAATCAAGTCTGAATCACACATTCTTTGTGTTCCATAGTGTCGACTAGATAAAAGAATTGCGTACACGTTAACTGATTACCACTATCATTTACTGGATATTTAGGATTCAATGTTTGCAACTCATTCTGTTTCTGCTTTCAGCAATAATATCTTTATGTTTAACATCAATTCATGTAGGACAAAGTGATTTCAAACCGAATTTGAACATATTACTGTGTGTGTTAATCTTGTTTCCTTCTTTTATTTTCAAATTAGCCACACGGTTAAATGACATTTGATTTCATAGTGATGTCCGTTTTGAAGTTGACCAAATCCTGTTAAATTACTTTTCAAAAACATTATCTAATTTCAACTTTATTGGGCCAACATAGTCTTTGACTTTCTTTTGTTATGCATTTCTTGCAGAGAGTACTCCATGCAACTCAATGCCTCTCGGATCAAAGTTCTTCAAGCTCAGGATGACTTGAT</genome_strand>
        <mrna_strand>AAAGCAGATCCAGCAGATGGTCAGATTCATCCGTCAGGAAGCTGAAGAAAAAGCCAATGAGATCTCCGTCTCCGCCGAAGAA..............................................................................................GAATTCAACATTGAGAAGTTGCAGCTAGTGGAAGCAGAGAAAAAGAAGATCAGACAGGAATACGAGCGTAAGGAGAAACAAGTTGATGTTCGCAAGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTACTCCATGCAACTCAATGCCTCTCGAATCAAGGTTCTTCAAGCTCAGGATGACTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339332" ref_strand="+" ref_description="SGN-E339332 [cTOF-4-J24]">
      <seq>tggaatacgagcgtaaagagaaacaagttgacgttcgtaagaaaatagagtactccatgcaactcaatgcctctcggatcaaagttcttcaagctcaggatgacttgattagctccatggaggaaacagcagcaaaggagatcttacatgttagcaaccaccatagctataagaagcttctgcatgatcttattgttcagagtttactcagacttaaagagccttctgtcttactgcgttgccggaaagatgatgtaaacctggtggaagatgtactagatgcagtaaaggaggagtatgcagagaaggcaatggtccacacacctgagatcataattgaccacatccatcttccaccagccccatctcatcataatgcgcatggtccttcttgttctggaggagtggtactggcttctcgagatgggaaaattgtgtgtgagaacactctagatgccagattggaagttgtgttccgtaaaaagctacccgagatccgcaagtgtctatttagtggcattgctgtctgaggggctggaagttgatctatatttatcacctgtctcagattctgagataggctattcagctgataaattatataatcatctaaaggcttgcttgtatacaatttcttatctaaaagacatactctgcccagtttttctgatactaaattcccaggtcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="37395" stop="43887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37695" g_stop="37740" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37741" i_stop="38449" i_length="709">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38450" g_stop="38603" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="200" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38604" i_stop="41601" i_length="2998">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41602" g_stop="41795" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="394" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41796" i_stop="41867" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41868" g_stop="41967" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="494" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41968" i_stop="43391" i_length="1424">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43392" g_stop="43587" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="690" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E339332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37695" e_stop="37740"/>
          <exon e_start="38450" e_stop="38603"/>
          <exon e_start="41602" e_stop="41795"/>
          <exon e_start="41868" e_stop="41967"/>
          <exon e_start="43392" e_stop="43587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATACGAGCGTAAAGAGAAACAAGTTGACGTTCGTAAGAAAATGTGATTTTTCTATTTTGCTCTGATTTGTGACTGTGATTAAATTTGAGATTTTTCGAAGATTTTGTTTATAAATGTTGCTCTTTATAGAAGAAGAGTTAAAGTTCAAAACTCCGCGTGAGAATTTGACATTTTGCTTCCACATATTGCTTATCAAATGATAGTAAAATGAGGTTAATAGAAGATATTCAAAAGATGTTATACTATCAACTACAATAGATAACTTTTGATTTGGCATGACGACTTTGTATTCATCCGAAACAATATAATTTTTAATTGCACTTGAAATTTTCACTTTTAGACTTAAAATCAAGTCTGAATCACACATTCTTTGTGTTCCATAGTGTCGACTAGATAAAAGAATTGCGTACACGTTAACTGATTACCACTATCATTTACTGGATATTTAGGATTCAATGTTTGCAACTCATTCTGTTTCTGCTTTCAGCAATAATATCTTTATGTTTAACATCAATTCATGTAGGACAAAGTGATTTCAAACCGAATTTGAACATATTACTGTGTGTGTTAATCTTGTTTCCTTCTTTTATTTTCAAATTAGCCACACGGTTAAATGACATTTGATTTCATAGTGATGTCCGTTTTGAAGTTGACCAAATCCTGTTAAATTACTTTTCAAAAACATTATCTAATTTCAACTTTATTGGGCCAACATAGTCTTTGACTTTCTTTTGTTATGCATTTCTTGCAGAGAGTACTCCATGCAACTCAATGCCTCTCGGATCAAAGTTCTTCAAGCTCAGGATGACTTGATTAGCTCCATGGAGGAAACAGCAGCAAAGGAGATCTTACATGTTAGCAACCACCATAGCTATAAGAAGCTTCTGCATGATCTTATTGTTCAGGTACTTTTGACTAATAATAATCCATGCGATTTTGTTCTTTGCTTCTAGATTTTCTGAGACAAATTATCAGAACTCGAAAATTAATAGGTTTATTTTACAAAAGACAAGCTATTCATCAGATTATCATCAATATCTTCAGTTGCTATGGTGTTGTACTTATATTTCTGCTCTGCTGTATACCAGATTATGAATTATTATTTAGTTTTGTTACAACAAAAGTACGGAGTAATTTCTATGTTAAGTATCCAAGGAATACAATGATTTAGATATAGGAAAAGAAAAGACTAAGTTAACTTGATATCTTAATCCATAAAAATCAGCTAGAATACTACATACAAGGAAAGATATAACTTTATTATTCTCTAATACTCCCCTCAAGCTAGAGCATAGATATTGATCATAGCTTGTTACAAAGGTAATAAACTTGAGTTCCATTTAATGCTTTTGTGAACAAAACAGCTAGTTAACATTTTACTTTTGTTGGTGCGATGTTTTTCCAGACATTTTCCCATAAACCTTGTTGTTTTTTGTTTTGGTGTGTATTAATTGTTACATAGACCCATTTAACAAATAAAAGCCCACCCTTTTTGTTCTTCCATCTCATAGAGTCTGGAGCTGAAGTAGTTTCAGTGAAGTCCCCTATTTCATGGAGTAGGTAGGGCACTCTATCCTCTTCCCAATCGTTCGAGAATCTATTAAAAGATAGATCCCATCCCAGTTCAGTCCAACACTCTTTGACAGTTGCTTCAAGGTTGTTACATATGGTGAATAGGTTTGGAAAAATATCTTTCAGAGGGATCTAGTTGTTCTAACTTTAACTGTGAATACCCACTTACATTCCATTGATTTCTTTCCCTTGGGTTAATTCACCAATCCCATGTGTGATTTTCATCTAAGGCGTGTATTTCATCAAGCATTGCATTAGACCATCTAGGATGATTCAAAGTCTCTTTCGCTATTTTGGGTACATAGACAGAGTCTAGAGAGGCAATCATAGATCCAGACGTTGAGTATAAGCCATCATAGGAAACATAATTAGCAATGGAATATGTGGATTTGCAACTATGAGTACCTTTGCGAAGAGCAATAGGGAGGTCATGATTTTCTGTAAGATCTCATGGCATGTGGATTGTTGTAGGGCATGTATCATTGGTCTCTCTCTTCCTTGAGTAAACTTGAACAACAAGTGGTCTTACTACCGCAGATGGAGTAGGAATTGATTGGACAATAGTCGATTGATCCTCGATAAAATAACTCGGAAATGGAGAGACAACATTTGATTTTTCTGTCAAAATACGGGTAACCTAATAGACTAACCACTCATCTTCCTCCTCCTAAATTGTAGAAATTGGAGGTACATAGAAAATGATGTAGACTCCGAAAATGCCACACTGATTGACACCAAATATCTGTGAAGTTTAGTAGAATTACACTGACACTCCTTTTGAAGGCGAGAATAACCTTAAAAAATGTACTTCAATGCCTTTGGATCCAACTTGGTAACAAATGGTCGAGCATCTCGAACATGACATGTGCATCCAAATACTTTAGGTTCCACCAAAAAGTGACTTGTTTGGAAAAAGAACACTATAAGGCATATTATTAGCAAGCATAATAGATGACATGCGATTAGCAAGAAAGCAAGTTGTAGAGATCGCAAGTCGAGCTGTCTCAAGTAGATGTCTATCCGTTCTCTCAACAACTCCATGTTGAGAGGGTGTAGCAACACATGAAGACTGCTGAAGAATACTATGTTGTCTCATATGACTGAAATATTCCTGACATATATTCTTTAGCATTGTCATTTCTTAGAATACGTATCGAAGCATTGAATTGAGTTTTGATTCAATACAGAAGGCACAAAAGTGAGTAAACACTTCTAAGTGACTTGGACTCTGAATAACTATTAAGTTATTTATTCTATGAATAGTTGTTCTGAAGTGTTCACTCATTTTTGTTGCCGAAATCTAAACTCAATTCAATGCTTCCGTACGTATTTTAAGAAGTGACTATGACAACACGATACTCTTCATATGTTGATACACCTTCTCAAACGGTGTTGCTGAGAGGATGGACATCTACTTAGGACAGCTGGGGCACTTCTGTTCCAAATGAAAGTTCCTAAACAATTTTGGACAAATGCGATTTCTACAACTTGTTTTCTGTTGAATTGCATGCCATCTAGTGTGGTTGTTGGTAATTTTCTTTTTCAAACATGTCACTATTTCCATATGAACCTAAGGTGTTTGGAAGCACATGTTATGTTCAACGATCTGTTCTAAAGTTTGATTAGAAGCAGTAAAGTGTGTTTTTCTAGGCTATTCTCATCTCCAAAGAGGTTATCGATGTTATTTTACTGTACATGGAAGATACTTGGTATCCAGTAGAGTGGTGTTTTCAGAGACTACACCATTCTTCTATGCACTTCCTAATCAGTGGGAAGGGGAAGAGGAATGGTTAGTCTATTAGGTTACTCGTGCTTCGACAACACATCAAATGATATTGTTCATCCATCTTCTGGTCCTTCTATTGAGCACCAATCGTGTAGTGTGCCTTCATTACCTGCTCCATCTGTGATAGCCAGGTCGCAAATTACTCAAGGAGGCAAGAGAATCATGATACATGTCCTGCACCAAATCCTTCGTCATCGGATCCAGACTGCTGGTTAGAATGTTAAGGTTATAGGAGACACGGTTGCAGTTCTAGATACCATAGGAGTAATTTGGTTGCTGTTAGAAAGAATTTGTGTTTCTTTCCTCTATCCTCTTCAATGGAATCCTGAGGTTTCCATATGTTCAATGCAATATGATCTTTCTTTTTCTTTGTAAGACCCTTGTTTCTTGTGCTATCTCCAAAACACGATATAATGATTAACAGCTAAATTATTTGCTAATTTATGTTGTCTATAGCCACAATGGGCTTTACTGTCTATGTGCCCTTTTGAACTAATTTTGCTGTTTTGTTTGGGAATAAGATGGGTACTACTCTTTGATTGTAGAGTTTACTCAGACTTAAAGAGCCTTCTGTCTTACTGCGTTGCCGGAAAGATGATGTAAACCTGGTGGAAGATGTACTAGATGCAGTAAAGGAGGAGTATGCAGAGAAGGCAATGGTCCACACACCTGAGATCATAATTGACCACATCCATCTTCCACCAGCCCCATCTCATCATAATGCGCATGGTCCTTCTTGGTAAGTGACTTCATATATGTCTGCAATGCTAAGTAGCTCCTCTTCGTAATTCATCTATCTCTATCCCGACAGTTCTGGAGGAGTGGTACTGGCTTCTCGAGATGGGAAAATTGTGTGTGAGAACACTCTAGATGCCAGATTGGAAGTTGTGTTCCGTAAAAAGCTACCCGAGGTACTTGCTTTTGTGCTTAGCTCCATACTTCTCATGATTGTGTTCTTCTCTTCCCAATTTTCTTGTTTCCTTGCACCAATATTGATACAATTGTGGTCCTTTTGCTGAGTTACACTGCCTATTTCAAGTGTCATGCATCCCTTGTCATTTTACAAATGTCATCTGGATGAATTAAGCGTCACATGTTCATTACCTATTAAAAAGATCATCTTTACAGGCCTTTTTTGGGGTGGGGGGAAATAGGCATTGTTGATACTTACAGGCTACAGCTGCTGTTTTTGCTGTCCTCCATAAAATTATTTTACATGTCAAGTCAATGGCTCTTTTGTACTTCGTACCTTGTTGCGTAAGCATCTCCAATAAGCTCCTTTGCTATTGTTTTTGTTACTGCACTTTGACATTTTGAGTTGTGGTGATGTCTGTTGCTTCTAGTCTTTGTTGAGACTAATTTATGGAAACTTCAATATCCATTTCCCTTTGGGGTAGCAAGAACATATTATGACGAGGTTAGTGATAGATGAAAGTGAAGATGGACTTAAAATAACTGGACATACCAGTCACCAGTAATATGAGTATAAAAACGAGAAAATGACCAAAATGGTCCTTAATGGGTGGGTAATGCTTTATTTAGGTCCATAATATATTTCAGTTGATTGAAATGGTCGTTAATCTATAAGAAAGGTGTTCATTTTGGTCCTTAATATATTTCAGTTGATTGAAATGGTCCTTAATGTATAACAAAATGTGGTCATTTTGGTCCTTTACGTTAAATCTAACAGATTTATTAAAAAAAAGTGCTAAATTTAACTATGAACCCTTCGTGGCCAACAATATTTACTATTGTTGTCTTCTTTGTTAGCTCCAAAGAAAGAACTCCACAAAATCAAATACCATTCTCTCTTTTCCCCAACAAAATTTTCCATTTTCTCTTTCCTAAAATATTACTCCACTGGTCTAATACTGATTTCTATTTTAAGCTAGAGAAAATAGTAAATTTTGTTAGAGAAAGTAGAGAGAATGTTTTTAGATTTCATGGTGAAATTTTTTGGAGCTAACTAAGCAAACAACAATGGTAGATCTTGTCAGCCACGTGGGATCCACAGTTAAGTTTAACACTTGTATTTCTATAAATATGTTAGGTTTGGGATAAATGATCAGAATGAACACAGTTATTGTATGTTAAGGACCTATTTCAATCAAGTGAAATACATTAAGTTCCAAAATAAAGCAGGACCATTTGGTTATTTTCACTCCAGAAACAGTCATTGTAGAATTGTAGTAGAGGTTGCTGTTGCTTCCTCTGTCATTGTGATTGAGTCCATCAAACAAGTCCTGCTGCTTCCATCAATTTTGCAGATTTCATAATTGCTTTTCGATGGTTCCCAAGAACTCTCTTTGCTTAGTTTCTCTCCTAAATATTGCAGATCCGCAAGTGTCTATTTAGTGGCATTGCTGTCTGAGGGGCTGGAAGTTGATCTATATTTATCACCTGTCTCAGATTCTGAGATAGGCTATTCAGCTGATAAATTATATAATCATCTAAAGGCTTGCTTGTATACAATTTCTTATCTAAAAGACATACTCTGCCCAGTTTTTCTGATACTAAATTCCCAGGTCGTG</genome_strand>
        <mrna_strand>TGGAATACGAGCGTAAAGAGAAACAAGTTGACGTTCGTAAGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTACTCCATGCAACTCAATGCCTCTCGGATCAAAGTTCTTCAAGCTCAGGATGACTTGATTAGCTCCATGGAGGAAACAGCAGCAAAGGAGATCTTACATGTTAGCAACCACCATAGCTATAAGAAGCTTCTGCATGATCTTATTGTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTACTCAGACTTAAAGAGCCTTCTGTCTTACTGCGTTGCCGGAAAGATGATGTAAACCTGGTGGAAGATGTACTAGATGCAGTAAAGGAGGAGTATGCAGAGAAGGCAATGGTCCACACACCTGAGATCATAATTGACCACATCCATCTTCCACCAGCCCCATCTCATCATAATGCGCATGGTCCTTCTTG........................................................................TTCTGGAGGAGTGGTACTGGCTTCTCGAGATGGGAAAATTGTGTGTGAGAACACTCTAGATGCCAGATTGGAAGTTGTGTTCCGTAAAAAGCTACCCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCAAGTGTCTATTTAGTGGCATTGCTGTCTGAGGGGCTGGAAGTTGATCTATATTTATCACCTGTCTCAGATTCTGAGATAGGCTATTCAGCTGATAAATTATATAATCATCTAAAGGCTTGCTTGTATACAATTTCTTATCTAAAAGACATACTCTGCCCAGTTTTTCTGATACTAAATTCCCAGGTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732344" ref_strand="+" ref_description="SGN-E732344 [LB01DF10]">
      <seq>cggtaagatgatgtaaacctggtggaagatgtactagatgcagtaaaggaggagtatgcagagaaggcaatggtccacacacctgagatcataattgaccacatccatcttccaccagccccatctcatcataatgcgcatggtccttcttgttctggaggagtggtactggcttctcgagatgggaaaattgtgtgtgagaacactctagatgccagattggaagttgtgttccgtaaaaagctacccgagatccgcaagtgtctatttagtggcattgctgtctgaggggctggaagttgatctatatttatcacctgtctcagattctgagataggctattcagctgataaattatataatcatctaaaggcttgcttgtatacaatttcttatctaaaagacatactctgcccagtttttctgatactaaattcccaggtcgtgttaagtaatcctttatactctagcattaagctttaatacccttttccattatcatgatctgcaataagtgtatgttggatgatctgagtttgttttgttaaggcataaataaagcgatatgagtgggcgccctctatacttanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcccgggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="41344" stop="44028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41644" g_stop="41795" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41796" i_stop="41867" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41868" g_stop="41967" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="252" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41968" i_stop="43391" i_length="1424">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43392" g_stop="43728" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="589" r_length="337" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="625"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E732344" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41644" e_stop="41795"/>
          <exon e_start="41868" e_stop="41967"/>
          <exon e_start="43392" e_stop="43728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAAGATGATGTAAACCTGGTGGAAGATGTACTAGATGCAGTAAAGGAGGAGTATGCAGAGAAGGCAATGGTCCACACACCTGAGATCATAATTGACCACATCCATCTTCCACCAGCCCCATCTCATCATAATGCGCATGGTCCTTCTTGGTAAGTGACTTCATATATGTCTGCAATGCTAAGTAGCTCCTCTTCGTAATTCATCTATCTCTATCCCGACAGTTCTGGAGGAGTGGTACTGGCTTCTCGAGATGGGAAAATTGTGTGTGAGAACACTCTAGATGCCAGATTGGAAGTTGTGTTCCGTAAAAAGCTACCCGAGGTACTTGCTTTTGTGCTTAGCTCCATACTTCTCATGATTGTGTTCTTCTCTTCCCAATTTTCTTGTTTCCTTGCACCAATATTGATACAATTGTGGTCCTTTTGCTGAGTTACACTGCCTATTTCAAGTGTCATGCATCCCTTGTCATTTTACAAATGTCATCTGGATGAATTAAGCGTCACATGTTCATTACCTATTAAAAAGATCATCTTTACAGGCCTTTTTTGGGGTGGGGGGAAATAGGCATTGTTGATACTTACAGGCTACAGCTGCTGTTTTTGCTGTCCTCCATAAAATTATTTTACATGTCAAGTCAATGGCTCTTTTGTACTTCGTACCTTGTTGCGTAAGCATCTCCAATAAGCTCCTTTGCTATTGTTTTTGTTACTGCACTTTGACATTTTGAGTTGTGGTGATGTCTGTTGCTTCTAGTCTTTGTTGAGACTAATTTATGGAAACTTCAATATCCATTTCCCTTTGGGGTAGCAAGAACATATTATGACGAGGTTAGTGATAGATGAAAGTGAAGATGGACTTAAAATAACTGGACATACCAGTCACCAGTAATATGAGTATAAAAACGAGAAAATGACCAAAATGGTCCTTAATGGGTGGGTAATGCTTTATTTAGGTCCATAATATATTTCAGTTGATTGAAATGGTCGTTAATCTATAAGAAAGGTGTTCATTTTGGTCCTTAATATATTTCAGTTGATTGAAATGGTCCTTAATGTATAACAAAATGTGGTCATTTTGGTCCTTTACGTTAAATCTAACAGATTTATTAAAAAAAAGTGCTAAATTTAACTATGAACCCTTCGTGGCCAACAATATTTACTATTGTTGTCTTCTTTGTTAGCTCCAAAGAAAGAACTCCACAAAATCAAATACCATTCTCTCTTTTCCCCAACAAAATTTTCCATTTTCTCTTTCCTAAAATATTACTCCACTGGTCTAATACTGATTTCTATTTTAAGCTAGAGAAAATAGTAAATTTTGTTAGAGAAAGTAGAGAGAATGTTTTTAGATTTCATGGTGAAATTTTTTGGAGCTAACTAAGCAAACAACAATGGTAGATCTTGTCAGCCACGTGGGATCCACAGTTAAGTTTAACACTTGTATTTCTATAAATATGTTAGGTTTGGGATAAATGATCAGAATGAACACAGTTATTGTATGTTAAGGACCTATTTCAATCAAGTGAAATACATTAAGTTCCAAAATAAAGCAGGACCATTTGGTTATTTTCACTCCAGAAACAGTCATTGTAGAATTGTAGTAGAGGTTGCTGTTGCTTCCTCTGTCATTGTGATTGAGTCCATCAAACAAGTCCTGCTGCTTCCATCAATTTTGCAGATTTCATAATTGCTTTTCGATGGTTCCCAAGAACTCTCTTTGCTTAGTTTCTCTCCTAAATATTGCAGATCCGCAAGTGTCTATTTAGTGGCATTGCTGTCTGAGGGGCTGGAAGTTGATCTATATTTATCACCTGTCTCAGATTCTGAGATAGGCTATTCAGCTGATAAATTATATAATCATCTAAAGGCTTGCTTGTATACAATTTCTTATCTAAAAGACATACTCTGCCCAGTTTTTCTGATACTAAATTCCCAGGTCGTGTTAAGTAATCCTTTATACTCTAGCATTAAGCTTTAATACCCTTTTCCATTATCATGATCTGCAATAAGTGTATGTTGGATGATCTGAGTTTGTTTTGTTAAGGCATAAATAAAACGATATGAGTGGGCGCCCTCTATACTT</genome_strand>
        <mrna_strand>CGGTAAGATGATGTAAACCTGGTGGAAGATGTACTAGATGCAGTAAAGGAGGAGTATGCAGAGAAGGCAATGGTCCACACACCTGAGATCATAATTGACCACATCCATCTTCCACCAGCCCCATCTCATCATAATGCGCATGGTCCTTCTTG........................................................................TTCTGGAGGAGTGGTACTGGCTTCTCGAGATGGGAAAATTGTGTGTGAGAACACTCTAGATGCCAGATTGGAAGTTGTGTTCCGTAAAAAGCTACCCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCAAGTGTCTATTTAGTGGCATTGCTGTCTGAGGGGCTGGAAGTTGATCTATATTTATCACCTGTCTCAGATTCTGAGATAGGCTATTCAGCTGATAAATTATATAATCATCTAAAGGCTTGCTTGTATACAATTTCTTATCTAAAAGACATACTCTGCCCAGTTTTTCTGATACTAAATTCCCAGGTCGTGTTAAGTAATCCTTTATACTCTAGCATTAAGCTTTAATACCCTTTTCCATTATCATGATCTGCAATAAGTGTATGTTGGATGATCTGAGTTTGTTTTGTTAAGGCATAAATAAAGCGATATGAGTGGGCGCCCTCTATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327551" ref_strand="+" ref_description="SGN-E327551 [cTOC-20-O3]">
      <seq>taagaagttgatagacaaatcatagtataatcttatcttacaatgagaagtatatataggagaagtcttatattcctcatcaaccaaatcctaaaagttcaaatctttccaataagcttaaaaatcaataaaaataactaaatatattgaaggataacttttaaaatatggtaaagaataaaggagcaactttggagtttccccaaaatagtttgacacataacttcatcatgtcaagatcgaaacttcattaggatcaagagcaaatacgagaggatttgccatcaataaaggtattaatgtctcacaataggaatccatatatattagtgactatgaattggttccacaccaactatgtatgcaccagacattacccttccctctcatgaaaatcttatggtaaacagcagtgaagtataaagggcgcccactcatatcgttttatttatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="44443" stop="43389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44143" g_stop="43689" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E327551" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44143" e_stop="43689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAAGTTGATAGACAAATCATAGTATAATCTTATCTTACAATGAGAAATATATATAGGAGAAGTCTTATATTCCTCATCAACCAAATCCTAAAAGTTCAAATCTTTCCAATAAGCTTAAAAATCAATAAAAATAACTAAATATATTGAAGGATAACTTTTAAAATATGGTAAAGAATAAAGGAGCAACTTTGGAGTTTCCCCAAAATAGTTTGACACATAACTTCATCATGTCAAGATCGAAACTTCATTAGGATCAAGAGCAAATACGAGAGGATTTGCCATCAATAAAGGTATTAATGTCTCACAATAGGAATCCATATATATTAGTGACTATGAATTGGTTCCACACCAACTATGTATGCACCAGACATTACCCTTCCCTCTCATGAAAATCTTATGGTAAACAGCAGTGAAGTATAGAGGGCGCCCACTCATATCGTTTTATTTATGCC</genome_strand>
        <mrna_strand>TAAGAAGTTGATAGACAAATCATAGTATAATCTTATCTTACAATGAGAAGTATATATAGGAGAAGTCTTATATTCCTCATCAACCAAATCCTAAAAGTTCAAATCTTTCCAATAAGCTTAAAAATCAATAAAAATAACTAAATATATTGAAGGATAACTTTTAAAATATGGTAAAGAATAAAGGAGCAACTTTGGAGTTTCCCCAAAATAGTTTGACACATAACTTCATCATGTCAAGATCGAAACTTCATTAGGATCAAGAGCAAATACGAGAGGATTTGCCATCAATAAAGGTATTAATGTCTCACAATAGGAATCCATATATATTAGTGACTATGAATTGGTTCCACACCAACTATGTATGCACCAGACATTACCCTTCCCTCTCATGAAAATCTTATGGTAAACAGCAGTGAAGTATAAAGGGCGCCCACTCATATCGTTTTATTTATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703949" ref_strand="+" ref_description="SGN-E703949 [FA22DG03]">
      <seq>gtcgtctaaggggcttttgtatttgggtatgggtgtttctggtggagaagaaggggcgaggaatggaccttcgcttatgcctggtgggtcttatggggcttatacgaatatcaaagatattcttgagaaggttgcagctcaagttgaggatgggccttgtgttacttatattggtgaaggtgggtcggggaattttgtgaaaatggtgcataatggaattgaatatggtgatatgcagttgatttcggaagcttatgatgtgttgaagaatgcgggtgggttgagtaattctgaattggctgatattttcgccgaatggaaccgtggggaattggagagctttttgattgaaattacagcggatatattcaatgtgaaggatgaattgactggaaatggggagttagtggacaagattttggataagacaggaatgaaggggacggggaaatggactgtgcagcaggcggcggagctgtctattgcagctccgacgattgctgcttcgttagacagtaggtacatgagtggattgaaggatgagagggtagaagcctcagagatttttaggaaggaaggtttaaaggaggaaataagttctgatattaatggtattagcagtgttgataagaagagattgattgatgatgtgaggcaggcattgtatgcgtcgaaaatctgtagttatgctcaggggatgaatttgctaagggcaaagagctctgagaaaggttggaatttgaatttgggagagatggctaagatttggaaaggtggttgtattatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47699" stop="49087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47999" g_stop="48787" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="789" r_length="789" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E703949" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47999" e_stop="48787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTCTAAGGGGCTTTTGTATTTGGGTATGGGTGTTTCTGGTGGAGAAGAAGGGGCGAGGAATGGACCTTCGCTTATGCCTGGTGGGTCTTATGGGGCTTATACGAATATCAAAGATATTCTTGAGAAGGTTGCAGCTCAAGTTGAGGATGGGCCTTGTGTTACTTATATTGGTGAAGGTGGGTCGGGGAATTTTGTGAAAATGGTGCATAATGGAATTGAATATGGTGATATGCAGTTGATTTCGGAAGCTTATGATGTGTTGAAGAATGCGGGTGGGTTGAGTAATTCTGAATTGGCTGATATTTTCGCCGAATGGAACCGTGGGGAATTGGAGAGCTTTTTGATTGAAATTACAGCGGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTTCGTTAGACAGTAGGTACATGAGTGGATTGAAGGATGAGAGGGTAGAAGCCTCAGAGATTTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAAGAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAGCTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAG</genome_strand>
        <mrna_strand>GTCGTCTAAGGGGCTTTTGTATTTGGGTATGGGTGTTTCTGGTGGAGAAGAAGGGGCGAGGAATGGACCTTCGCTTATGCCTGGTGGGTCTTATGGGGCTTATACGAATATCAAAGATATTCTTGAGAAGGTTGCAGCTCAAGTTGAGGATGGGCCTTGTGTTACTTATATTGGTGAAGGTGGGTCGGGGAATTTTGTGAAAATGGTGCATAATGGAATTGAATATGGTGATATGCAGTTGATTTCGGAAGCTTATGATGTGTTGAAGAATGCGGGTGGGTTGAGTAATTCTGAATTGGCTGATATTTTCGCCGAATGGAACCGTGGGGAATTGGAGAGCTTTTTGATTGAAATTACAGCGGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACGATTGCTGCTTCGTTAGACAGTAGGTACATGAGTGGATTGAAGGATGAGAGGGTAGAAGCCTCAGAGATTTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAAGAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAGCTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAAGATTTGGAAAGGTGGTTGTATTATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334337" ref_strand="+" ref_description="SGN-E334337 [cTOD-21-B9]">
      <seq>ggagaagaaggggcgaggaatggaccttcgcttatgcctggtgggtcttatggggcttatacgaatatcaaagatattcttgagaaggttgcagctcaagttgaggatgggccttgtgttacttatattggtgaaggtgggtcggggaattttgtgaaaatggtgcataatggaattgaatatggtgatatgcagttgatttcggaagcttatgatgtgttgaagaatgcgggtgggttgagtaattctgaattggctgatattttcgccgaatggaaccgtggggaattggagagctttttgattgaaattacagcggatatattcaatgtgaaggatgaattgactggaaatggggagttagtggacaagattttggataagacaggaatgaaggggacggggaaatggactgtgcagcaggcggcggagctgtctattgcagctccgacaattgctgcttcgttagacagtaggtacatgagtggattgaaggatgagagggtagaagcctcagagatttttaggaaggaaggtttaaaggaggaaataagttctgatattaatggtattagcagtgttgataagaagagattgattgatgatgtgaggcaggcattgtatgcgtcgaaaatctgtagttatgctcaggggatgaatttgctaagggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47742" stop="49014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48042" g_stop="48714" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E334337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48042" e_stop="48714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAGAAGGGGCGAGGAATGGACCTTCGCTTATGCCTGGTGGGTCTTATGGGGCTTATACGAATATCAAAGATATTCTTGAGAAGGTTGCAGCTCAAGTTGAGGATGGGCCTTGTGTTACTTATATTGGTGAAGGTGGGTCGGGGAATTTTGTGAAAATGGTGCATAATGGAATTGAATATGGTGATATGCAGTTGATTTCGGAAGCTTATGATGTGTTGAAGAATGCGGGTGGGTTGAGTAATTCTGAATTGGCTGATATTTTCGCCGAATGGAACCGTGGGGAATTGGAGAGCTTTTTGATTGAAATTACAGCGGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTTCGTTAGACAGTAGGTACATGAGTGGATTGAAGGATGAGAGGGTAGAAGCCTCAGAGATTTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAAGAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAA</genome_strand>
        <mrna_strand>GGAGAAGAAGGGGCGAGGAATGGACCTTCGCTTATGCCTGGTGGGTCTTATGGGGCTTATACGAATATCAAAGATATTCTTGAGAAGGTTGCAGCTCAAGTTGAGGATGGGCCTTGTGTTACTTATATTGGTGAAGGTGGGTCGGGGAATTTTGTGAAAATGGTGCATAATGGAATTGAATATGGTGATATGCAGTTGATTTCGGAAGCTTATGATGTGTTGAAGAATGCGGGTGGGTTGAGTAATTCTGAATTGGCTGATATTTTCGCCGAATGGAACCGTGGGGAATTGGAGAGCTTTTTGATTGAAATTACAGCGGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTTCGTTAGACAGTAGGTACATGAGTGGATTGAAGGATGAGAGGGTAGAAGCCTCAGAGATTTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAAGAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332994" ref_strand="+" ref_description="SGN-E332994 [cTOD-19-J14]">
      <seq>ggagaagaaggggcgaggaatggaccttcgcttatgcctggtgggtcttatggggcttatacgaatatcaaagatattcttgagaaggttgcagctcaagttgaggatgggccttgtgttacttatattggtgaaggtgggtcggggaattttgtgaaaatggtgcataatggaattgaatatggtgatatgcagttgatttcggaagcttatgatgtgttgaagaatgcgggtgggttgagtaattctgaattggctgatattttcgccgaatggaaccgtggggaattggagagctttttgattgaaattacagcggatatattcaatgtgaaggatgaattgactggaaatggggagttagtggacaagattttggataagacaggaatgaaggggacggggaaatggactgtgcagcaggcggcggagctgtctattgcagctccgacaattgctgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47742" stop="48804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48042" g_stop="48504" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E332994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48042" e_stop="48504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAGAAGGGGCGAGGAATGGACCTTCGCTTATGCCTGGTGGGTCTTATGGGGCTTATACGAATATCAAAGATATTCTTGAGAAGGTTGCAGCTCAAGTTGAGGATGGGCCTTGTGTTACTTATATTGGTGAAGGTGGGTCGGGGAATTTTGTGAAAATGGTGCATAATGGAATTGAATATGGTGATATGCAGTTGATTTCGGAAGCTTATGATGTGTTGAAGAATGCGGGTGGGTTGAGTAATTCTGAATTGGCTGATATTTTCGCCGAATGGAACCGTGGGGAATTGGAGAGCTTTTTGATTGAAATTACAGCGGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTT</genome_strand>
        <mrna_strand>GGAGAAGAAGGGGCGAGGAATGGACCTTCGCTTATGCCTGGTGGGTCTTATGGGGCTTATACGAATATCAAAGATATTCTTGAGAAGGTTGCAGCTCAAGTTGAGGATGGGCCTTGTGTTACTTATATTGGTGAAGGTGGGTCGGGGAATTTTGTGAAAATGGTGCATAATGGAATTGAATATGGTGATATGCAGTTGATTTCGGAAGCTTATGATGTGTTGAAGAATGCGGGTGGGTTGAGTAATTCTGAATTGGCTGATATTTTCGCCGAATGGAACCGTGGGGAATTGGAGAGCTTTTTGATTGAAATTACAGCGGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332961" ref_strand="+" ref_description="SGN-E332961 [cTOD-19-L1]">
      <seq>ggagaagaaggggcgaggaatggaccttcgcttatgcctggtgggtcttatggggcttatacgaatatcaaagatattcttgagaaggttgcagctcaagttgaggatgggccttgtgttacttatattggtgaaggtgggtcggggaattttgtgaaaatggtgcataatggaattgaatatggtgatatgcagttgatttcggaagcttatgatgtgttgaagaatgcgggtgggttgagtaattctgaattggctgatattttcgccgaatggaaccgtggggaattggagagctttttgattgaaattacagcggatatattcaatgtgaaggatgaattgactggaaatggggagttagtggacaagattttggataagacaggaatgaaagggacggggaaatggactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47742" stop="48757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48042" g_stop="48457" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E332961" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48042" e_stop="48457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAGAAGGGGCGAGGAATGGACCTTCGCTTATGCCTGGTGGGTCTTATGGGGCTTATACGAATATCAAAGATATTCTTGAGAAGGTTGCAGCTCAAGTTGAGGATGGGCCTTGTGTTACTTATATTGGTGAAGGTGGGTCGGGGAATTTTGTGAAAATGGTGCATAATGGAATTGAATATGGTGATATGCAGTTGATTTCGGAAGCTTATGATGTGTTGAAGAATGCGGGTGGGTTGAGTAATTCTGAATTGGCTGATATTTTCGCCGAATGGAACCGTGGGGAATTGGAGAGCTTTTTGATTGAAATTACAGCGGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGT</genome_strand>
        <mrna_strand>GGAGAAGAAGGGGCGAGGAATGGACCTTCGCTTATGCCTGGTGGGTCTTATGGGGCTTATACGAATATCAAAGATATTCTTGAGAAGGTTGCAGCTCAAGTTGAGGATGGGCCTTGTGTTACTTATATTGGTGAAGGTGGGTCGGGGAATTTTGTGAAAATGGTGCATAATGGAATTGAATATGGTGATATGCAGTTGATTTCGGAAGCTTATGATGTGTTGAAGAATGCGGGTGGGTTGAGTAATTCTGAATTGGCTGATATTTTCGCCGAATGGAACCGTGGGGAATTGGAGAGCTTTTTGATTGAAATTACAGCGGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAAGGGACGGGGAAATGGACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304100" ref_strand="+" ref_description="SGN-E304100 [cLEX-6-N7]">
      <seq>aaattacagcggatatattcaatgtgaaggatgaattgactggaaatggggagttagtggacaagattttggataagacaggaatgaaggggacggggaaatggactgtgcagcaggcggcggagctgtctattgcagctccgacaattgctgcttcgttagacagtaggtacatgagtggattgaaggatgagagggtagaagcctcagagatttttaggaaggaaggtttaaaggaggaaataagttctgatattaatggtattagcagtgttgataagaagagattgattgatgatgtgaggcaggcattgtatgcgtcgaaaatctgtagttatgctcaggggatgaatttgctaagggcaaagagctctgagaaaggttggaatttgaatttgggagagatggctaggatttggaaaggtggttgtattatcagggcagtgtttttggatcgtattaagaaggcgtatcagaggaatcctaatttggctaacttgatggttgacacggagttcgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="48049" stop="49171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48349" g_stop="48871" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E304100" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48349" e_stop="48871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTACAGCGGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTTCGTTAGACAGTAGGTACATGAGTGGATTGAAGGATGAGAGGGTAGAAGCCTCAGAGATTTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAAGAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAGCTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAG</genome_strand>
        <mrna_strand>AAATTACAGCGGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTTCGTTAGACAGTAGGTACATGAGTGGATTGAAGGATGAGAGGGTAGAAGCCTCAGAGATTTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAAGAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAGCTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288036" ref_strand="+" ref_description="SGN-E288036 [cLES-7-B16]">
      <seq>aaattacagcggatatattcaatgtgaaggatgaattgactggaaatggggagttagtggacaagattttggataagacaggaatgaaggggacggggaaatggactgtgcagcaggcggcggagctgtctattgcagctccgacaattgctgcttcgttagacagtaggtacatgagtggattgaaggatgagagggtagaagcctcagagatttttaggaaggaaggtttaaaggaggaaataagttctgatattaatggtattagcagtgttgataagaagagattgattgatgatgtgaggcaggcattgtatgcgtcgaaaatctgtagttatgctcaggggatgaatttgctaagggcaaagagctctgagaaaggttggaatttgaatttgggagacatggctaggatttggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="48049" stop="49071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48349" g_stop="48771" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E288036" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48349" e_stop="48771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTACAGCGGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTTCGTTAGACAGTAGGTACATGAGTGGATTGAAGGATGAGAGGGTAGAAGCCTCAGAGATTTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAAGAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAGCTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAG</genome_strand>
        <mrna_strand>AAATTACAGCGGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTTCGTTAGACAGTAGGTACATGAGTGGATTGAAGGATGAGAGGGTAGAAGCCTCAGAGATTTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAAGAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAGCTCTGAGAAAGGTTGGAATTTGAATTTGGGAGACATGGCTAGGATTTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726632" ref_strand="+" ref_description="SGN-E726632 [LA12BE12]">
      <seq>cgcggatatattcaatgtgaaggatgaattgactggaaatggggagttagtggacaagattttggataagacaggaatgaaggggacggggaaatggactgtgcagcaggcggcggagctgtctattgcagctccgacaattgctgcttcgttagacagtaggtacatgagtggattgaaggatgagagggtagaagcctcagagatttttaggaaggaaggtttaaaggaggaaataagttctgatattaatggtattagcagtgttgataagaagagattgattgatgatgtgaggcaggcattgtatgcgtcgaaaatctgtagttatgctcaggggatgaatttgctaagggcaaagagctctgagaaaggttggaatttgaatttgggagagatggctaggatttggaaaggtggttgtattatcagggcagtgtttttggatcgtattaagaaggcgtatcagaggaatcctaatttggctaacttgatggttgacacggagttcgcaagggagatggtgcagaggcaagctgcttggaggagagtggtgggacttgctgttcagaagggaattagtgttcctggaatgtctgctagtcttcagtatttcgacacctacaggcgttctaggcttcccgcgaaccttgtgcaggctcagagggactatttcggggcacatacttatgagagagttgacaagccaggagcataccataccgagtgggcaaaacttgctaggaaagctcgagtgtaatgctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="48057" stop="49424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48356" g_stop="49124" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="769" r_length="769" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E726632" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48356" e_stop="49124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTTCGTTAGACAGTAGGTACATGAGTGGATTGAAGGATGAGAGGGTAGAAGCCTCAGAGATTTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAAGAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAGCTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTGGAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGC</genome_strand>
        <mrna_strand>CGCGGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTTCGTTAGACAGTAGGTACATGAGTGGATTGAAGGATGAGAGGGTAGAAGCCTCAGAGATTTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAAGAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAGCTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTGGAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705535" ref_strand="+" ref_description="SGN-E705535 [FA27BF12]">
      <seq>cgttggacaagattttggataagacaggaatgaaggggacggggaaatggactgtgcagcaggcggcggagctgtctattgcagctccgacgattgctgcttcgttagacagtaggtacgagtggattgaaggatgagagggtagaagcctcagagatttttaggaaggaaggtttaaaggaggaaataagttctgatattaatggtattagcagtgttgataagaagagattgattgatgatgtgaggcaggcattgtatgcgtcgaaaatctgtagttatgctcaggggatgaatttgctaagggcaaagagctctgagaaaggttggaatttgaatttgggagagatggctaggatttggaaaggtggttgtattatcagggcagtgtttttggatcgtattaagaaggcgtatcagaggaatcctaatttggctaacttgatggttgacacggagttcgcaagggagatggtgcagaggcaagctgcttggaggagagtggtgggacttgctgttcagaagggaattagtgttcctggaatgtctgctagtcttcagtatttcgacacctacaggcgttctaggcttcccgcgaaccttgtgcaggctcagagggactatttcggggcacatacttatgagagagttgacaagccaggagcataccataccgagtgggcaaaacttgctaggaaagctcgagtgtaatgctgctgcagctattgcggattatgatcaaaatctctggtattagtcccgctttagtacttttttcgtttagttttgcagttaataatgttgtatgcctttgaacattatagggccttcgctatcgaaatgacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="48106" stop="49553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48403" g_stop="49253" g_length="851"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="849" r_length="849" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E705535" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48403" e_stop="49253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTTCGTTAGACAGTAGGTACATGAGTGGATTGAAGGATGAGAGGGTAGAAGCCTCAGAGATTTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAAGAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAGCTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTGGAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCT</genome_strand>
        <mrna_strand>CGTTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACGATTGCTGCTTCGTTAGACAGTAGGTAC--GAGTGGATTGAAGGATGAGAGGGTAGAAGCCTCAGAGATTTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAAGAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAGCTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTGGAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCCCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708478" ref_strand="+" ref_description="SGN-E708478 [FA35DE06]">
      <seq>cagtcaggaatgaaggggacggggaaatggactgtgcagcaggcggcggagctgtctattgcagctccgacaattgctgcttcgttagacagtaggtacatgagtggattgaaggatgagagggtagaagcctcagagattttaggaaggaaggtttaaaggaggaaataagttctgatattaatggtattagcagtgttgataagaagagattgattgatgatgtgaggcaggcattgtatgcgtcgaaaatctgtagttatgctcaggggatgaatttgctaagggcaaagagctctgagaaaggttggaatttgaatttgggagagatggctaggatttggaaaggtggttgtattatcagggcagtgtttttggatcgtattaagaaggcgtatcagaggaatcctaatttggctaacttgatggttgacacggagttcgcaagggagatggtgcagaggcaagctgcttggaggagagtggtgggacttgctgttcagaagggaattagtgttcctggaatgtctgctagtcttcagtatttcgacacctacaggcgttctaggcttcccgcgaaccttgtgcaggctcagagggactatttcggggcacatacttatgagagagttgacaagccaggagcataccataccgagtgggcaaaacttgctaggaaagctcgagtgtaatgctgctgcagctattgcggattatgatcaaaatctctggtattagtcgcgctttagtacttttttcgtttagttttgcagttaataatgttgtatgcctttgaacattatagggccttcgctatcgaaatgacttctttcattgaagtaaaagaagttgcttttcctacattacattttgatgcatacaaattacctgcactttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="48124" stop="49622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48423" g_stop="49322" g_length="900"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="899" r_length="899" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E708478" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48423" e_stop="49322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTTCGTTAGACAGTAGGTACATGAGTGGATTGAAGGATGAGAGGGTAGAAGCCTCAGAGATTTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAAGAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAGCTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTGGAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCCATTGAAGTAAAAGAAGTTGCTTTTCCTACATTACATTTTGATGCATACAAATTACCTGCACTTTTA</genome_strand>
        <mrna_strand>CAGTCAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTTCGTTAGACAGTAGGTACATGAGTGGATTGAAGGATGAGAGGGTAGAAGCCTCAGAGA-TTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAAGAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAGCTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTGGAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTTCATTGAAGTAAAAGAAGTTGCTTTTCCTACATTACATTTTGATGCATACAAATTACCTGCACTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715023" ref_strand="+" ref_description="SGN-E715023 [FB13AD11]">
      <seq>cgaaaatctgtagttatgctcaggggatgaatttgctaagggcaaagagctctgagaaaggttggaatttgaatttgggagagatggctaggatttggaaaggtggttgtattatcagggcagtgtttttggatcgtattaagaaggcgtatcagaggaatcctaatttggctaacttgatggttgacacggagttcgcaagggagatggtgcagaggcaagctgcttggaggagagtggtgggacttgctgttcagaagggaattagtgttcctggaatgtctgctagtcttcagtatttcgacacctacaggcgttctaggcttcccgcgaaccttgtgcaggctcagagggactatttcggggcacatacttatgagagagttgacaagccaggagcataccataccgagtgggcaaaacttgctaggaaagctcgagtgtaatgctgctgcagctattgcggattatgatcaaaatctctggtattagtcgcgctttagtacttttttcgtttagttttgcagttaataatgttgtatgcctttgaacattatagggccttcgctatcgaaatgacttcttccattgaagtaaaagaagttgcttttcctacattacattttgatgcatacaaattacctgcacttttatttatatatatggattattatagctcctcactctccaaacgaatattttgtataatttgaagatatcatgttatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="48370" stop="49698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48670" g_stop="49398" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E715023" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48670" e_stop="49398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAGCTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTGGAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCCATTGAAGTAAAAGAAGTTGCTTTTCCTACATTACATTTTGATGCATACAAATTACCTGCACTTTTATTTATATATATGGATTATTACAGCTCCTCACTCTCCAAACGAATATTTTGTATAATTTGAAGATATCATGTTATAG</genome_strand>
        <mrna_strand>CGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAGCTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTGGAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCCATTGAAGTAAAAGAAGTTGCTTTTCCTACATTACATTTTGATGCATACAAATTACCTGCACTTTTATTTATATATATGGATTATTATAGCTCCTCACTCTCCAAACGAATATTTTGTATAATTTGAAGATATCATGTTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348378" ref_strand="+" ref_description="SGN-E348378 [cTOF-27-C14]">
      <seq>ctctgagaaaggttggaatttgaatttgggagagatggctaggatttggaaaggtggttgtattatcagggcagtgtttttggatcgtattaagaaggcgtatcagaggaatcctaatttggctaacttgatggttgacacggagttcgcaagggagatggtgcagaggcaagctgcttggaggagagtggtgggacttgctgttcagaagggaattagtgttcctggaatgtctgctagtcttcagtatttcgacacctacaggcgttctaggcttcccgcgaaccttgtgcaggctcagagggactatttcggggcacatacttatgagagagttgacaagccaggagcataccataccgagtgggcaaaacttgctaggaaagctcgagtgtaatgctgctgcagctattgcggattatgatcaaaatctctggtattagtcgcgctttagtacttttttcgtttagttttgcagttaataatgttgtatgcctttgaacattatagggccttcgctatcgaaatgacttcttccattgaagtaaaagaagttgcttttcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="48419" stop="49591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48719" g_stop="49293" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E348378" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48719" e_stop="49293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTGGAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCCATTGAAGTAAAAGAAGTTGCTTTTCCTACATTACATT</genome_strand>
        <mrna_strand>CTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTGGAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCCATTGAAGTAAAAGAAGTTGCTTTTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357524" ref_strand="+" ref_description="SGN-E357524 [cTOS-23-D19]">
      <seq>ttgaatttgggagagatggctaggatttggaaaggtggttgtattatcagggcagtgtttttggatcgtattaagaaggcgtatcagaggaatcctaatttggctaacttgatggttgacacggagttcgcaagggagatggtgcagaggcaagctgcttggaggagagtggtgggacttgctgttcagaagggaattagtgttcctggaatgtctgctagtcttcagtatttcgacacctacaggcgttctaggcttcccgcgaaccttgtgcaggctcagagggactatttcggggcacatacttatgagagagttgacaagccaggagcataccataccgagtgggcaaaacttgctaggaaagctcgagtgtaatgctgctgcagctattgcggattatgatcaaaatctctggtattagtcgcgctttagtacttttttcgtttagttttgcagttaataatgttgtatgcctttgaacattatagggccttcgctatcgaaatgacttcttccattgaagtaaaagaagttgcttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="48438" stop="49582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48738" g_stop="49282" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E357524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48738" e_stop="49282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTGGAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCCATTGAAGTAAAAGAAGTTGCTTTTCC</genome_strand>
        <mrna_strand>TTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTGGAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCCATTGAAGTAAAAGAAGTTGCTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300810" ref_strand="+" ref_description="SGN-E300810 [cLEW-8-G4]">
      <seq>taatccatatatataaataaaagtgcaggtaatttgtatgcatcaaaatgtaatgtaggaaaagcaacttcttttacttcaatggaagaagtcatttccatagcgaaggccctataatgttcaaaggcatacaacattattaactgcaaaactaaacgaaaaaagtgctaaagcgcgactaataccatagattttgatcataatccgcaatagctgcagcagcattacactcgagctttcctagcaagttttgcccactcggtatggtatgctcctggcttgtcaactctctcataagtatgtgccccgaaatagtccctctgagcctgcacaaggttcgcgggaagcctaaaacgcctgtcggtgtcgaaatactgaagactagcagacattccaggaacactaattcccttctgaacagcaagtcccaccactctccttcaagcagcttgcctgtgcaccatctcccttgcgaactccgtgtcaaccatcaagttagccaaattaggattcctgtgatacgccttcttaatacgatccaaaaacactgccctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="49639" stop="48483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49339" g_stop="48783" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E300810" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49339" e_stop="48783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCATATATATAAATAAAAGTGCAGGTAATTTGTATGCATCAAAATGTAATGTAGGAAAAGCAACTTCTTTTACTTCAATGGAAGAAGTCATTTCGATAGCGAAGGCCCTATAATGTTCAAAGGCATACAACATTATTAACTGCAAAACTAAACGAAAAAAGTACTAAAGCGCGACTAATACCAGAGATTTTGATCATAATCCGCAATAGCTGCAGCAGCATTACACTCGAGCTTTCCTAGCAAGTTTTGCCCACTCGGTATGGTATGCTCCTGGCTTGTCAACTCTCTCATAAGTATGTGCCCCGAAATAGTCCCTCTGAGCCTGCACAAGGTTCGCGGGAAGCCTAGAACGCCTGTAGGTGTCGAAATACTGAAGACTAGCAGACATTCCAGGAACACTAATTCCCTTCTGAACAGCAAGTCCCACCACTCTCCTCCAAGCAGCTTGCCTCTGCACCATCTCCCTTGCGAACTCCGTGTCAACCATCAAGTTAGCCAAATTAGGATTCCTCTGATACGCCTTCTTAATACGATCCAAAAACACTGCCCTGAT</genome_strand>
        <mrna_strand>TAATCCATATATATAAATAAAAGTGCAGGTAATTTGTATGCATCAAAATGTAATGTAGGAAAAGCAACTTCTTTTACTTCAATGGAAGAAGTCATTTCCATAGCGAAGGCCCTATAATGTTCAAAGGCATACAACATTATTAACTGCAAAACTAAACGAAAAAAGTGCTAAAGCGCGACTAATACCATAGATTTTGATCATAATCCGCAATAGCTGCAGCAGCATTACACTCGAGCTTTCCTAGCAAGTTTTGCCCACTCGGTATGGTATGCTCCTGGCTTGTCAACTCTCTCATAAGTATGTGCCCCGAAATAGTCCCTCTGAGCCTGCACAAGGTTCGCGGGAAGCCTAAAACGCCTGTCGGTGTCGAAATACTGAAGACTAGCAGACATTCCAGGAACACTAATTCCCTTCTGAACAGCAAGTCCCACCACTCTCCTTCAAGCAGCTTGCCTGTGCACCATCTCCCTTGCGAACTCCGTGTCAACCATCAAGTTAGCCAAATTAGGATTCCTGTGATACGCCTTCTTAATACGATCCAAAAACACTGCCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712320" ref_strand="+" ref_description="SGN-E712320 [FB04CB02]">
      <seq>gtttttggatcgtattaagaaggcgtatcagaggaatcctaatttggctaacttgatggttgacacggagttcgcaagggagatggtgcagaggcaagctgcttggaggagagtggtgggacttgctgttcagaagggaattagtgttcctggaatgtctgctagtcttcagtatttcgacacctacaggcgttctaggcttcccgcgaaccttgtgcaggctcagagggactatttcggggcacatacttatgagagagttgacaagccaggagcataccataccgagtgggcaaaacttgctaggaaagctcgagtgtaatgctgctgcagctattgcggattatgatcaaaatctctggtattagtcgcgctttagtacttttttcgtttagttttgcagttaataatgttgtatgcctttgaacattatagggccttcgctatcgaaatgacttcttccattgaagtagaaaaaaaaaaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="48494" stop="49571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48794" g_stop="49262" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="490"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E712320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48794" e_stop="49262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTGGAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCCATTGAA</genome_strand>
        <mrna_strand>GTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTGGAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCCATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227585" ref_strand="+" ref_description="SGN-E227585 [cLEL-30-P3](-)">
      <seq>gaattagtgttcctggaatgtctgctagtcttcagtatttcgacacctacaggcgttctaggcttcccgcgaaccttgtgcaggctcagagggactatttcggggcacatacttatgagagagttgacaagccaggagcataccataccgagtgggcaaaacttgctaggaaagctcgagtgtaatgctgctgcagctaatgcggattatgatcaaaatctctggtattagtcgcgctttagtacttttttcgtttagttttgcagttaataatgttgtatgcctttgaacattatagggccttcgccatcgaaatgacttcttcccccccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="48631" stop="49556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48931" g_stop="49256" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="349"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E227585" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48931" e_stop="49256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCC</genome_strand>
        <mrna_strand>GAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTAATGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCCATCGAAATGACTTCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227365" ref_strand="+" ref_description="SGN-E227365 [cLEL-30-P3](-)">
      <seq>gtgcaggctcagagggactatttcggggcacatacttatgagagagttgacaagccaggagcataccataccgagtgggcaaaacttgctaggaaagctcgagtgtaatgctgctgcagctattgcggattatgatcaaaatctctggtattagtcgcgctttagtacttttttcgtttagttttgcagttaataatgttgtatgcctttgaacattatagggccttcgctatcgaaatgacttcttcccttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="48708" stop="49571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49008" g_stop="49262" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="256" polyA_stop="272"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E227365" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49008" e_stop="49262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCCATTGAA</genome_strand>
        <mrna_strand>GTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCCCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308876" ref_strand="+" ref_description="SGN-E308876 [cLEY-23-K6]">
      <seq>ctatttcggggcacatacttatgagagagttgacaagccaggagcataccataccgagtgggcaaaacttgctaggaaagctcgagtgtaatgctgctgcagctattgcggattatgatcaaaatctctggtattagtcgcgctttagtacttttttcgtttagttttgcagttaataatgttgtatgcctttgaacattatagggccttcgctatcgaaatgacttcttccattgaagtaaaagaagttgcttttcctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="48725" stop="49591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49025" g_stop="49285" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="262" polyA_stop="273"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E308876" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49025" e_stop="49285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCCATTGAAGTAAAAGAAGTTGCTTTTCCTAC</genome_strand>
        <mrna_strand>CTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCCATTGAAGTAAAAGAAGTTGCTTTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279285" ref_strand="-" ref_description="SGN-E279285 [cLEL-4-O18](-)">
      <seq>gcacgagggccatgggaagcacaaatttggaacccaacaagttagaaatgtatgaatttggcccttttgaagaagatgagggtttccaaattgggtttttgataggccaaaaattctccaaattaatacaaaacaggttatctactgaccttattcttcaaaatcaattactcccttttgctcaactcccaaattctcaaacacttatacatactttatctcaaacaaacaagaacaagttcccaaattattggaatgaactcaaaggaattgctcaaggaagtggtgtcccctttctcaatattttattattgaattttaggaaagaaatattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="68582" stop="70186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68877" g_stop="69178" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69179" i_stop="69851" i_length="673">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69852" g_stop="69886" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="337" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E279285" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279285" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68877" e_stop="69178"/>
          <exon e_start="69852" e_stop="69886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAATGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAATGTGAACTTCCTAACTTACCCTTCTTCCTTTTTTTTCGTATTTTATATTCTGACTAATTTAAATTTGTATCGTGTAGGATTTATTAATAGATTTAGGGGCCTAAAGTTTGTCTAAACAAAGATTTTGAGCTTATGGGCTCTGTATTCTAAAAAGTAATGTTGTTTGATTTGACATAAAAATTAAGAAACAGAAGTGTTGTCTAAAACAAGTCACAAGTGTTTGTGTGAATATAAATCATCACTTTAAAGTTAAATTGTTATCAAATAGCAAAACATGTCATTTTTTTCGACTAATTTGAAAGAAATGTGTGTCATATAATTTAGGACAGAAAGAATACTAAGTTTGATTTTTGAGCCAAAGCTAATATGTTATGTTGAACCTGAACAAATGTTGTAGCTCCACTCTAGACTATATATATGAAGTTGTATTATGGCAAATGTTGAGTCCCCTTGACTTTCTTTTGTGCTTTTGCGTATTGAAAATTTTGATTTTGCTACTTATAAGATTCGTTACATTAAACGAGAAGCACCTTGTACGAGTTTTTTGTACTTCTAAAACTTTTAATTAAGGGAGGAGGGATATTATCGACCCCACGAAAGGACTTTATTGTCCATACTTCTTCTATTAAGTAGATAAATTAACAAACTGACATTGTTTTCTTTTGGTTCTTCAGATTTTATTATTGAATTTTAGGAAAGAAATATTGCC</genome_strand>
        <mrna_strand>GCACGAGGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATTATTGAATTTTAGGAAAGAAATATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289769" ref_strand="+" ref_description="SGN-E289769 [cLET-4-N4]">
      <seq>aataatggccatgggaagcacaaatttggaacccaacaagttagaaatgtatgaatttggcccttttgaagaagatgagggtttccaaattgggtttttgataggccaaaaattctccaaattaatacaaaacaggttatctactgaccttattcttcaaaatcaattactcccttttgctcaactcccaaattctcaaacacttatacatactttatctcaaacaaacaagaacaagttcccaaattattggaatgaactcaaaggaattgctcaaggaagtggtgtcccctttctcaatattttattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="68578" stop="69480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68878" g_stop="69178" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69179" i_stop="69254" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69255" g_stop="69265" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="312" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E289769" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68878" e_stop="69178"/>
          <exon e_start="69255" e_stop="69265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAATGTGAACTTCCTAACTTACCCTTCTTCCTTTTTTTTCGTATTTTATATTCTGACTAATTTAAATTTGTATCGTGTAGGATTTATTAAT</genome_strand>
        <mrna_strand>AATAATGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAAT............................................................................ATTTTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339142" ref_strand="+" ref_description="SGN-E339142 [cTOF-6-B15]">
      <seq>aataatggccatgggaagcacaaatttggaacccaacaagttagaaatgtatgaatttggcccttttgaagaagatgagggtttccaaattgggtttttgataggccaaaaattctccaaattaatacaaaacaggttatctactgaccttattcttcaaaatcaattactcccttttgctcaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="68578" stop="69364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68878" g_stop="69064" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E339142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>187</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68878" e_stop="69064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTC</genome_strand>
        <mrna_strand>AATAATGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329794" ref_strand="+" ref_description="SGN-E329794 [cTOD-3-K22]">
      <seq>aatgtatgaatttggcccttttgaagaagatgagggtttccaaattgggtttttgataggccaaaaattctccaaattaatacaaaacaggttatctactgaccttattcttcaaaatcaattactcccttttgctcaactcccaaattctcaaacacttatacatactttatctcaaacaaacaagaacaagttcccaaattattggaatgaactcaaaggaattgctcaaggaagtggtgtcccctttctcaatattttattattgaattttaggaaagaaatattgcctttcattccaaagacagaggaatgtcccaaggaggaagacattaatgatgactgttctgatattcttgttgttagtaattccatggctatggcagttcataatgaggatgcaaatgttgctcttgtcggacacacttatttggttaaggtgacattatctaatggaacaacattcactgcttatacatatgctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="68623" stop="70713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68923" g_stop="69178" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69179" i_stop="69851" i_length="673">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69852" g_stop="70021" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="426" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70022" i_stop="70351" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70352" g_stop="70413" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="488" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E329794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68923" e_stop="69178"/>
          <exon e_start="69852" e_stop="70021"/>
          <exon e_start="70352" e_stop="70413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAATGTGAACTTCCTAACTTACCCTTCTTCCTTTTTTTTCGTATTTTATATTCTGACTAATTTAAATTTGTATCGTGTAGGATTTATTAATAGATTTAGGGGCCTAAAGTTTGTCTAAACAAAGATTTTGAGCTTATGGGCTCTGTATTCTAAAAAGTAATGTTGTTTGATTTGACATAAAAATTAAGAAACAGAAGTGTTGTCTAAAACAAGTCACAAGTGTTTGTGTGAATATAAATCATCACTTTAAAGTTAAATTGTTATCAAATAGCAAAACATGTCATTTTTTTCGACTAATTTGAAAGAAATGTGTGTCATATAATTTAGGACAGAAAGAATACTAAGTTTGATTTTTGAGCCAAAGCTAATATGTTATGTTGAACCTGAACAAATGTTGTAGCTCCACTCTAGACTATATATATGAAGTTGTATTATGGCAAATGTTGAGTCCCCTTGACTTTCTTTTGTGCTTTTGCGTATTGAAAATTTTGATTTTGCTACTTATAAGATTCGTTACATTAAACGAGAAGCACCTTGTACGAGTTTTTTGTACTTCTAAAACTTTTAATTAAGGGAGGAGGGATATTATCGACCCCACGAAAGGACTTTATTGTCCATACTTCTTCTATTAAGTAGATAAATTAACAAACTGACATTGTTTTCTTTTGGTTCTTCAGATTTTATTATTGAATTTTAGGAAAGAAATATTGCCTTTCATTCCAAAGACAGAGGAATGTCCCAAGGAGGAAGACATTAATGATGACTGTTCTGATATTCTTGTTGTTAGTAATTCCATGGCTATGGCAGTTCATAATGAGGATGCAAATGTTGCTCTTGTCGGACACACGTAAATTATCTTCTTCTTTTTTTTCCGACATAATAACTAAACAGTCATTCAAACTTGGCTTCAGCTAGCAAGTATACACATTCTAGACACCTCAACTCGTCTTCACTGTGTTAGTTGAACCTCCAACTTCTATACATCTTCATGTGTCACTTTAGCATCGCGCATCCACGAGACATAGTGGGAATGGTTTGGTTGTCAGTTGAAACCAAGTTGAGTAGTGCATTTCAAAGTTGAAGTGCTTACTTGCCAGCTGAAGCCAAGTTTGAGCGCTTGTTTTATATCTGGTGCTTTTGGAAAATATGACCCTTTTCTGTTTACATTATACTGCAGTTATTTGGTTAAGGTGACATTATCTAATGGAACAACATTCACTGCTTATACATATGCTGGAG</genome_strand>
        <mrna_strand>AATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATTATTGAATTTTAGGAAAGAAATATTGCCTTTCATTCCAAAGACAGAGGAATGTCCCAAGGAGGAAGACATTAATGATGACTGTTCTGATATTCTTGTTGTTAGTAATTCCATGGCTATGGCAGTTCATAATGAGGATGCAAATGTTGCTCTTGTCGGACACAC..........................................................................................................................................................................................................................................................................................................................................TTATTTGGTTAAGGTGACATTATCTAATGGAACAACATTCACTGCTTATACATATGCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351134" ref_strand="+" ref_description="SGN-E351134 [cTOS-6-L20]">
      <seq>gacagttccatcaaatacgaagagaagactattagaaatgtgtcggaaacaattactatcctacgtgattacagtcgttgcagtttgtttctggttggtcgaaggcctaatggcgttgtacctcttgcattgagccagaggactgattgtcctgaactcgggccagtcgggagtttgttgacttcacaggaatacgccacaacagcatcagttctggtggtgcaacagtattatgataagttatatgcaactaatccacatcagagggatgtagcttcagttccagagaactaattaggggctctttcattgatctttgaatcataatgactgtttttcattcttgacagtttgatataaactatnctttttgagctgtaatcatcacttttttaaatacaggattctggttgctttttttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="83177" stop="84195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83477" g_stop="83900" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E351134" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83477" e_stop="83900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTTCCATCAAATACGAAGAGAAGACTATTAGAAATGTGTCGGAAACAATTACTATCCTACGTGATTACAGTCGTTGCAGTTTGTTTCTGGTTGGTCGAAGGCCTAATGGCGTTGTACCTCTTGCATTGAGCCAGAGGACTGATTGTCCTGAACTCGGGCCAGTCGGGAGTTTGTTGACTTCACAGGAATACGCCACAACAGCATCAGTTCTGGTGGTGCAACAGTATTATGATAAGTTATATGCAACTAATCCACATCAGAGGGATGTAGCTTCAGTTCCAGAGAACTAATTAGGGGCTCTTTCATTGATCTTTGAATCATAATGACTGTTTTTCATTCTTGACAGTTTGATAT-AACTAT-CTTTTTGAGCTGTAATCATCAC-TTTTTAAATACAAGGATTCTGGTTGCTTTTTTTGTGGA</genome_strand>
        <mrna_strand>GACAGTTCCATCAAATACGAAGAGAAGACTATTAGAAATGTGTCGGAAACAATTACTATCCTACGTGATTACAGTCGTTGCAGTTTGTTTCTGGTTGGTCGAAGGCCTAATGGCGTTGTACCTCTTGCATTGAGCCAGAGGACTGATTGTCCTGAACTCGGGCCAGTCGGGAGTTTGTTGACTTCACAGGAATACGCCACAACAGCATCAGTTCTGGTGGTGCAACAGTATTATGATAAGTTATATGCAACTAATCCACATCAGAGGGATGTAGCTTCAGTTCCAGAGAACTAATTAGGGGCTCTTTCATTGATCTTTGAATCATAATGACTGTTTTTCATTCTTGACAGTTTGATATAAACTATNCTTTTTGAGCTGTAATCATCACTTTTTTAAATAC-AGGATTCTGGTTGCTTTTTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353585" ref_strand="+" ref_description="SGN-E353585 [cTOS-15-D16]">
      <seq>gacagttccatcaaatacgaagagaagactattagaaatgtgtcggaaacaattactatcctacgtgattacagtcgttgcagtttgtttctggttggtcgaaggcctaatggcgttgtacctcttgcattgagccagaggactgattgtcctgaactcgggccagtcgggagtttgttgacttcacaggaatacgccacaacagcatcagttctggtggtgcaacagtattatgataagttatatgcaactaatccacatcagagggatgtagcttcagttccagagaactaattaggggctctttcattgatctttgaatcataatgactgtttttcattcttgacagtttgatataactatctttttgagctgtaatcatcactttttaaatacaaggattctggttgcttttttaaaaaaannnannaannaanaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="+" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="83177" stop="84194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83477" g_stop="83895" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="436" polyA_stop="448"/>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="+" ref_id="SGN-E353585" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83477" e_stop="83895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTTCCATCAAATACGAAGAGAAGACTATTAGAAATGTGTCGGAAACAATTACTATCCTACGTGATTACAGTCGTTGCAGTTTGTTTCTGGTTGGTCGAAGGCCTAATGGCGTTGTACCTCTTGCATTGAGCCAGAGGACTGATTGTCCTGAACTCGGGCCAGTCGGGAGTTTGTTGACTTCACAGGAATACGCCACAACAGCATCAGTTCTGGTGGTGCAACAGTATTATGATAAGTTATATGCAACTAATCCACATCAGAGGGATGTAGCTTCAGTTCCAGAGAACTAATTAGGGGCTCTTTCATTGATCTTTGAATCATAATGACTGTTTTTCATTCTTGACAGTTTGATATAACTATCTTTTTGAGCTGTAATCATCACTTTTTAAATACAAGGATTCTGGTTGCTTTTTTT</genome_strand>
        <mrna_strand>GACAGTTCCATCAAATACGAAGAGAAGACTATTAGAAATGTGTCGGAAACAATTACTATCCTACGTGATTACAGTCGTTGCAGTTTGTTTCTGGTTGGTCGAAGGCCTAATGGCGTTGTACCTCTTGCATTGAGCCAGAGGACTGATTGTCCTGAACTCGGGCCAGTCGGGAGTTTGTTGACTTCACAGGAATACGCCACAACAGCATCAGTTCTGGTGGTGCAACAGTATTATGATAAGTTATATGCAACTAATCCACATCAGAGGGATGTAGCTTCAGTTCCAGAGAACTAATTAGGGGCTCTTTCATTGATCTTTGAATCATAATGACTGTTTTTCATTCTTGACAGTTTGATATAACTATCTTTTTGAGCTGTAATCATCACTTTTTAAATACAAGGATTCTGGTTGCTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356200" ref_strand="+" ref_description="SGN-E356200 [cTOS-20-D17]">
      <seq>ggaccggtaccttgttcagctgaatcaataagatcaactcctgtcaaatcttctaaggaatctgacggtttcagtaacagctttgtaaataaaccatgtacgacgtccccatatacaagggtgatggataaggtttatagtagtagcgaccagaagccgaggaaggtagccaatggagcggagccaaggagatgacagaatgttgaagagcgaactgattatgcagtgaatcagacaagaactgttactgttgcatttgtctattccttctaactgctgttcgacatgcaaaatatggtagaatctgtatagcctgtcacatggaagaaatgaatgttgtaatcttatgctgggctgggtgacttgggatcattgtgcttgtaccattacatgttacatggatgccagacacatcgatacgctttcagcattgcctcagtgtacatcattgatgaggcaatatggtagaaaagttctctatgtagtctctggtattccggaggtattcgttacgtgtgtgtaaatgtattcattatgtgatatctatggtcaggacattttcatactcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0302G23-iCix8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0302G23.1" temp_strand="-" temp_description="C12HBa0302G23.1  AC217248.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0302G23 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="86856" stop="85687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86556" g_stop="85979" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0302G23.1" gen_strand="-" ref_id="SGN-E356200" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0302G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86556" e_stop="85979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCGGTACCTTGTTCAGCTGAATCAATAAGATCAACTCCTGTCAAATCTTCTAAGGAATCTGACGGTTTCAGTAACAGCTTTGTAAATAAACCATGTACGACGTCCCCATATACAAGGGTGATGGATAAGGTTTATAGTAGTAGCGACCAGAAGCCGAGGAAGGTAGCCAATGGAGCGGAGCCAAGGAGATGACAGAATGTTGAAGAGCGAACTGATTATGCAGTGAATCAGACAAGAACTGTTACTGTTGCATTTGTCTATTCCTTCTAACTGCTGTTCGACATGCAAAATATGGTAGAATCTGTATAGCCTGTCACATGGAAGAAATGAATGTTGTAATCTTATGCTGGGCTGGGTGACTTGGGATCATTGTGCTTGTACCATTACATGTTACATGGATGCCAGACACATCGATACGCTTTCAGCATTGCCTCAGTGTACATCATTGATGAGGCAATATGGTAGAAAAGTTCTCTATGTAGTCTCTGGTATTCCGGAGGTATTCGTTACGTGTGTGTAAATGTATTCATTATGTGATATCTATGGTCAGGACATTTTCATACTCAATTCTGTTG</genome_strand>
        <mrna_strand>GGACCGGTACCTTGTTCAGCTGAATCAATAAGATCAACTCCTGTCAAATCTTCTAAGGAATCTGACGGTTTCAGTAACAGCTTTGTAAATAAACCATGTACGACGTCCCCATATACAAGGGTGATGGATAAGGTTTATAGTAGTAGCGACCAGAAGCCGAGGAAGGTAGCCAATGGAGCGGAGCCAAGGAGATGACAGAATGTTGAAGAGCGAACTGATTATGCAGTGAATCAGACAAGAACTGTTACTGTTGCATTTGTCTATTCCTTCTAACTGCTGTTCGACATGCAAAATATGGTAGAATCTGTATAGCCTGTCACATGGAAGAAATGAATGTTGTAATCTTATGCTGGGCTGGGTGACTTGGGATCATTGTGCTTGTACCATTACATGTTACATGGATGCCAGACACATCGATACGCTTTCAGCATTGCCTCAGTGTACATCATTGATGAGGCAATATGGTAGAAAAGTTCTCTATGTAGTCTCTGGTATTCCGGAGGTATTCGTTACGTGTGTGTAAATGTATTCATTATGTGATATCTATGGTCAGGACATTTTCATACTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>95</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="10912" PGL_stop="19445"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10912" e_stop="11215"/>
            <exon e_start="11314" e_stop="11379"/>
            <exon e_start="15815" e_stop="15959"/>
            <exon e_start="16064" e_stop="16282"/>
            <exon e_start="18176" e_stop="18362"/>
            <exon e_start="18478" e_stop="18673"/>
            <exon e_start="19048" e_stop="19445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.982" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="10912" e_stop="11215" e_length="304"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.982">
            <gDNA_intron_boundary i_start="11216" i_stop="11313" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11314" e_stop="11379" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.886">
            <gDNA_intron_boundary i_start="11380" i_stop="15814" i_length="4435"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15815" e_stop="15959" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.993">
            <gDNA_intron_boundary i_start="15960" i_stop="16063" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16064" e_stop="16282" e_length="219"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.987">
            <gDNA_intron_boundary i_start="16283" i_stop="18175" i_length="1893"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18176" e_stop="18362" e_length="187"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18363" i_stop="18477" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18478" e_stop="18673" e_length="196"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="18674" i_stop="19047" i_length="374"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="19048" e_stop="19445" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10912" stop="11215"/>
              <exon start="11314" stop="11379"/>
              <exon start="15815" stop="15959"/>
              <exon start="16064" stop="16282"/>
              <exon start="18176" stop="18281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10975" stop="11215"/>
              <exon start="11314" stop="11379"/>
              <exon start="15815" stop="15959"/>
              <exon start="16064" stop="16282"/>
              <exon start="18176" stop="18263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10976" stop="11215"/>
              <exon start="11314" stop="11379"/>
              <exon start="15815" stop="15959"/>
              <exon start="16064" stop="16103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11032" stop="11215"/>
              <exon start="11314" stop="11379"/>
              <exon start="15815" stop="15959"/>
              <exon start="16064" stop="16282"/>
              <exon start="18176" stop="18362"/>
              <exon start="18478" stop="18504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16215" stop="16282"/>
              <exon start="18176" stop="18362"/>
              <exon start="18478" stop="18673"/>
              <exon start="19048" stop="19368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18521" stop="18673"/>
              <exon start="19048" stop="19445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18521" stop="18673"/>
              <exon start="19048" stop="19445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19075" stop="19419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309429" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAAGTTTGCACTTGATCACATACCGAAAGGGCGAGCTGAAGATTTGTACAGGAAGTTTGTGGCATTTGAAAAGCAGTATGGTGATAGAGAAGGTATTGAGGACGCTATAGTTGGGAAAAGGAGGTTTCAGTATGAGGATGAAGTGAGGAAGAATCCACGTAACTATGACACGTGGTTTGATTATATTCGGCTGGAAGAGAGCGTTGGAAATAAAGAGAGGATTAGAGAGGTTTATGAGAGAGCCATTGCTAATGTTCCTCCTGCTGAAGAGAAGCGATATTGGCAGCGATACATTTACTTATG : GATTAATTATGCATTATATGAAGAGCTTGATGCAGAAGACATGGAAAGAACCAGAGATGTCTACAG : GGAGTGTCTTAAGCTGATTCCACATCAGAAGTTTTCATTTGCAAAGATTTGGTTGTTGGCTGCCCAATTTGAGATTCGGCAGTTAAGACTCAAGGAGGCGCGACTTCTACTTGGAGAAGCAATTGGAAGGGCTCCTAAAGACAAG : ATATTTAAGAAGTACATAGAGATAGAGCTGCATTTTGGAAACATAGATCGTTGCAGAAAGCTTTATGAGAAGTACTTGGAATGGTCTCCAGAAAATTGCTATGCTTGGAGCAAATTCGCCGAGTTGGAGAGGTCCTTGTATGAAACGGATAGAGCCAGGGCTATTTTTGAGCTTGCAATTGACCAACCTGCTCTGGATATGCCGGAGCTATTATGGAAG : GCTTACATCGACTTTGAAATTTCTGAGGGTGAATTTGAAAGAACTAGAGCACTATATGAAAGACTTCTTAACCGCACAAAACACTTGAAGGTGTGGATAAGTTATGCGAAGTTTGAGGCTTCGGCTATGGATCCAGAGGCTGAGGAAGATATTGAACTGAAAAAGAACTGCCTACAACGCGCCAGAG : ATGTTTTTGAGAGGGCAGTTTCTTACTTCAGAAATTCGGCACCCGAACTAAAGGAAGAAAGAGCAATGCTTCTCGAAGAGTGGCTAAATATGGAAAGTGGTTTTGCTGAGCTTGGGGATGTCAGTTTAGTCCGTGCTAAACTACCAAAGAAACTCAAGAAGAGAAGGCAAATAGACATGGAGGATGGTCCAGCAGC : TTATGAAGAGTACATAGACTATCTTTTCCCAGAGGAAACACAGACCACAAATCTCAAAATATTGGAAGCTGCTTACAAATGGAAGAAGCAGCGAGTTGCATCTGAGGAGGATTAGCCAAGCTTTGTTAGCTTCCATTTGGTTTTGGTATTCTTGTTTTCTCCTTTCTGCCTTGTATCAAAAGTTGAAAGAATGCTTGTGCAATTGACATCATATCTTTTATCTCAACAAGTCTTATCTGGCATTGTTTTTGCACTCAAAAAGGGGCATGGCACAGGAGGCCTAGTAGAATGTTGTGTAGTGACACGGAATAATCCAATTTTATTTTATTTTGGCAACGATATATTGTAAATTATGTTAGTGTACTTCAACCAGTTTGAACATAGTTCATCTCCCTTGA</gDNA_template>
            <first_frame> I  S  L  H  L  I  T  Y  R  K  G  E  L  K  I  C  T  G  S  L  W  H  L  K  S  S  M  V  I  E  K  V  L  R  T  L  *  L  G  K  G  G  F  S  M  R  M  K  *  G  R  I  H  V  T  M  T  R  G  L  I  I  F  G  W  K  R  A  L  E  I  K  R  G  L  E  R  F  M  R  E  P  L  L  M  F  L  L  L  K  R  S  D  I  G  S  D  T  F  T  Y   : G  L  I  M  H  Y  M  K  S  L  M  Q  K  T  W  K  E  P  E  M  S  T   : G  S  V  L  S  *  F  H  I  R  S  F  H  L  Q  R  F  G  C  W  L  P  N  L  R  F  G  S  *  D  S  R  R  R  D  F  Y  L  E  K  Q  L  E  G  L  L  K  T  R :   Y  L  R  S  T  *  R  *  S  C  I  L  E  T  *  I  V  A  E  S  F  M  R  S  T  W  N  G  L  Q  K  I  A  M  L  G  A  N  S  P  S  W  R  G  P  C  M  K  R  I  E  P  G  L  F  L  S  L  Q  L  T  N  L  L  W  I  C  R  S  Y  Y  G  R :   L  T  S  T  L  K  F  L  R  V  N  L  K  E  L  E  H  Y  M  K  D  F  L  T  A  Q  N  T  *  R  C  G  *  V  M  R  S  L  R  L  R  L  W  I  Q  R  L  R  K  I  L  N  *  K  R  T  A  Y  N  A  P  E  :  M  F  L  R  G  Q  F  L  T  S  E  I  R  H  P  N  *  R  K  K  E  Q  C  F  S  K  S  G  *  I  W  K  V  V  L  L  S  L  G  M  S  V  *  S  V  L  N  Y  Q  R  N  S  R  R  E  G  K  *  T  W  R  M  V  Q  Q   : L  M  K  S  T  *  T  I  F  S  Q  R  K  H  R  P  Q  I  S  K  Y  W  K  L  L  T  N  G  R  S  S  E  L  H  L  R  R  I  S  Q  A  L  L  A  S  I  W  F  W  Y  S  C  F  L  L  S  A  L  Y  Q  K  L  K  E  C  L  C  N  *  H  H  I  F  Y  L  N  K  S  Y  L  A  L  F  L  H  S  K  R  G  M  A  Q  E  A  *  *  N  V  V  *  *  H  G  I  I  Q  F  Y  F  I  L  A  T  I  Y  C  K  L  C  *  C  T  S  T  S  L  N  I  V  H  L  P  * </first_frame>
            <second_frame>  *  V  C  T  *  S  H  T  E  R  A  S  *  R  F  V  Q  E  V  C  G  I  *  K  A  V  W  *  *  R  R  Y  *  G  R  Y  S  W  E  K  E  V  S  V  *  G  *  S  E  E  E  S  T  *  L  *  H  V  V  *  L  Y  S  A  G  R  E  R  W  K  *  R  E  D  *  R  G  L  *  E  S  H  C  *  C  S  S  C  *  R  E  A  I  L  A  A  I  H  L  L  M  :  D  *  L  C  I  I  *  R  A  *  C  R  R  H  G  K  N  Q  R  C  L  Q  :  G  V  S  *  A  D  S  T  S  E  V  F  I  C  K  D  L  V  V  G  C  P  I  *  D  S  A  V  K  T  Q  G  G  A  T  S  T  W  R  S  N  W  K  G  S  *  R  Q   : D  I  *  E  V  H  R  D  R  A  A  F  W  K  H  R  S  L  Q  K  A  L  *  E  V  L  G  M  V  S  R  K  L  L  C  L  E  Q  I  R  R  V  G  E  V  L  V  *  N  G  *  S  Q  G  Y  F  *  A  C  N  *  P  T  C  S  G  Y  A  G  A  I  M  E   : G  L  H  R  L  *  N  F  *  G  *  I  *  K  N  *  S  T  I  *  K  T  S  *  P  H  K  T  L  E  G  V  D  K  L  C  E  V  *  G  F  G  Y  G  S  R  G  *  G  R  Y  *  T  E  K  E  L  P  T  T  R  Q  R :   C  F  *  E  G  S  F  L  L  Q  K  F  G  T  R  T  K  G  R  K  S  N  A  S  R  R  V  A  K  Y  G  K  W  F  C  *  A  W  G  C  Q  F  S  P  C  *  T  T  K  E  T  Q  E  E  K  A  N  R  H  G  G  W  S  S  S  :  L  *  R  V  H  R  L  S  F  P  R  G  N  T  D  H  K  S  Q  N  I  G  S  C  L  Q  M  E  E  A  A  S  C  I  *  G  G  L  A  K  L  C  *  L  P  F  G  F  G  I  L  V  F  S  F  L  P  C  I  K  S  *  K  N  A  C  A  I  D  I  I  S  F  I  S  T  S  L  I  W  H  C  F  C  T  Q  K  G  A  W  H  R  R  P  S  R  M  L  C  S  D  T  E  *  S  N  F  I  L  F  W  Q  R  Y  I  V  N  Y  V  S  V  L  Q  P  V  *  T  *  F  I  S  L   </second_frame>
            <third_frame>   K  F  A  L  D  H  I  P  K  G  R  A  E  D  L  Y  R  K  F  V  A  F  E  K  Q  Y  G  D  R  E  G  I  E  D  A  I  V  G  K  R  R  F  Q  Y  E  D  E  V  R  K  N  P  R  N  Y  D  T  W  F  D  Y  I  R  L  E  E  S  V  G  N  K  E  R  I  R  E  V  Y  E  R  A  I  A  N  V  P  P  A  E  E  K  R  Y  W  Q  R  Y  I  Y  L  W :   I  N  Y  A  L  Y  E  E  L  D  A  E  D  M  E  R  T  R  D  V  Y  R :   E  C  L  K  L  I  P  H  Q  K  F  S  F  A  K  I  W  L  L  A  A  Q  F  E  I  R  Q  L  R  L  K  E  A  R  L  L  L  G  E  A  I  G  R  A  P  K  D  K  :  I  F  K  K  Y  I  E  I  E  L  H  F  G  N  I  D  R  C  R  K  L  Y  E  K  Y  L  E  W  S  P  E  N  C  Y  A  W  S  K  F  A  E  L  E  R  S  L  Y  E  T  D  R  A  R  A  I  F  E  L  A  I  D  Q  P  A  L  D  M  P  E  L  L  W  K  :  A  Y  I  D  F  E  I  S  E  G  E  F  E  R  T  R  A  L  Y  E  R  L  L  N  R  T  K  H  L  K  V  W  I  S  Y  A  K  F  E  A  S  A  M  D  P  E  A  E  E  D  I  E  L  K  K  N  C  L  Q  R  A  R   : D  V  F  E  R  A  V  S  Y  F  R  N  S  A  P  E  L  K  E  E  R  A  M  L  L  E  E  W  L  N  M  E  S  G  F  A  E  L  G  D  V  S  L  V  R  A  K  L  P  K  K  L  K  K  R  R  Q  I  D  M  E  D  G  P  A  A :   Y  E  E  Y  I  D  Y  L  F  P  E  E  T  Q  T  T  N  L  K  I  L  E  A  A  Y  K  W  K  K  Q  R  V  A  S  E  E  D  *  P  S  F  V  S  F  H  L  V  L  V  F  L  F  S  P  F  C  L  V  S  K  V  E  R  M  L  V  Q  L  T  S  Y  L  L  S  Q  Q  V  L  S  G  I  V  F  A  L  K  K  G  H  G  T  G  G  L  V  E  C  C  V  V  T  R  N  N  P  I  L  F  Y  F  G  N  D  I  L  *  I  M  L  V  Y  F  N  Q  F  E  H  S  S  S  P  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10914" stop="11215"/>
                    <exon start="11314" stop="11379"/>
                    <exon start="15815" stop="15959"/>
                    <exon start="16064" stop="16282"/>
                    <exon start="18176" stop="18362"/>
                    <exon start="18478" stop="18673"/>
                    <exon start="19048" stop="19162"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1227</number_coding_nucleotides>
                  <number_encoded_amino_acids>409</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPRNYDTWFDYIRLEESVGNKERIREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAEDMERTRDVYRECLKLIPHQKFSFAKIWLLAAQFEIRQLRLKEARLLLGEAIGRAPKDKIFKKYIEIELHFGNIDRCRKLYEKYLEWSPENCYAWSKFAELERSLYETDRARAIFELAIDQPALDMPELLWKAYIDFEISEGEFERTRALYERLLNRTKHLKVWISYAKFEASAMDPEAEEDIELKKNCLQRARDVFERAVSYFRNSAPELKEERAMLLEEWLNMESGFAELGDVSLVRAKLPKKLKKRRQIDMEDGPAAYEEYIDYLFPEETQTTNLKILEAAYKWKKQRVASEED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19163" stop="19396"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSFVSFHLVLVFLFSPFCLVSKVERMLVQLTSYLLSQQVLSGIVFALKKGHGTGGLVECCVVTRNNPILFYFGNDIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="26803" PGL_stop="23155"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26803" e_stop="26681"/>
            <exon e_start="23516" e_stop="23155"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26803" e_stop="26681" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="26680" i_stop="23517" i_length="3164"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="23516" e_stop="23155" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26803" stop="26681"/>
              <exon start="23516" stop="23155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243263" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCTTCAACCTGTTTGTGGGCAAGAAGCACTTGATCTCCTAAATTGCACCACTGAATCGCCTTACGATAAGGAGAAATGCCAAAAGTTGCTTGAAACTTTGCGCCAATGCGTAATCAACAAG : AAAGTAAAGAAGTTCTCGCTTTCTGATCCGAGGATAGGGAAACCAGAAGGGAGCAATGAGAAAAGAAGTTAATCCTTGTGAAGTCATAAGGAATGTCTTCTGTGTTGTGAATTTGCTCCTGATTCTTCTTATTCGGCGGAATAAGCATTTACCATCTTATTCTAACATGTACAATTGTCCTAAACATCTCATTTCTGTTTCCTACACTTGTTAGTTTTCTCTTTTTCAGTTATTACTTCGAAATCATGAAAATTTTACATGGTTTATGTGAAATCTATTAAGACATATATGTGGAGTATAACACTAAATCAGGTTAGTTTACCATGTCTTGTATTCATGACTTGTATGAGTATTTTGATTCG</gDNA_template>
            <first_frame> S  L  Q  P  V  C  G  Q  E  A  L  D  L  L  N  C  T  T  E  S  P  Y  D  K  E  K  C  Q  K  L  L  E  T  L  R  Q  C  V  I  N  K  :  K  V  K  K  F  S  L  S  D  P  R  I  G  K  P  E  G  S  N  E  K  R  S  *  S  L  *  S  H  K  E  C  L  L  C  C  E  F  A  P  D  S  S  Y  S  A  E  *  A  F  T  I  L  F  *  H  V  Q  L  S  *  T  S  H  F  C  F  L  H  L  L  V  F  S  F  S  V  I  T  S  K  S  *  K  F  Y  M  V  Y  V  K  S  I  K  T  Y  M  W  S  I  T  L  N  Q  V  S  L  P  C  L  V  F  M  T  C  M  S  I  L  I   </first_frame>
            <second_frame>  V  F  N  L  F  V  G  K  K  H  L  I  S  *  I  A  P  L  N  R  L  T  I  R  R  N  A  K  S  C  L  K  L  C  A  N  A  *  S  T  R :   K  *  R  S  S  R  F  L  I  R  G  *  G  N  Q  K  G  A  M  R  K  E  V  N  P  C  E  V  I  R  N  V  F  C  V  V  N  L  L  L  I  L  L  I  R  R  N  K  H  L  P  S  Y  S  N  M  Y  N  C  P  K  H  L  I  S  V  S  Y  T  C  *  F  S  L  F  Q  L  L  L  R  N  H  E  N  F  T  W  F  M  *  N  L  L  R  H  I  C  G  V  *  H  *  I  R  L  V  Y  H  V  L  Y  S  *  L  V  *  V  F  *  F  </second_frame>
            <third_frame>   S  S  T  C  L  W  A  R  S  T  *  S  P  K  L  H  H  *  I  A  L  R  *  G  E  M  P  K  V  A  *  N  F  A  P  M  R  N  Q  Q   : E  S  K  E  V  L  A  F  *  S  E  D  R  E  T  R  R  E  Q  *  E  K  K  L  I  L  V  K  S  *  G  M  S  S  V  L  *  I  C  S  *  F  F  L  F  G  G  I  S  I  Y  H  L  I  L  T  C  T  I  V  L  N  I  S  F  L  F  P  T  L  V  S  F  L  F  F  S  Y  Y  F  E  I  M  K  I  L  H  G  L  C  E  I  Y  *  D  I  Y  V  E  Y  N  T  K  S  G  *  F  T  M  S  C  I  H  D  L  Y  E  Y  F  D  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26803" stop="26681"/>
                    <exon start="23516" stop="23445"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLQPVCGQEALDLLNCTTESPYDKEKCQKLLETLRQCVINKKVKKFSLSDPRIGKPEGSNEKRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="33939" PGL_stop="29013"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33929" e_stop="33737"/>
            <exon e_start="33618" e_stop="33535"/>
            <exon e_start="30996" e_stop="30869"/>
            <exon e_start="29680" e_stop="29576"/>
            <exon e_start="29447" e_stop="29013"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.910" e_score="0.943"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.932" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="33929" e_stop="33737" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.910">
            <gDNA_intron_boundary i_start="33736" i_stop="33619" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33618" e_stop="33535" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30996" e_stop="30869" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.908">
            <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29680" e_stop="29576" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.932">
            <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="29447" e_stop="29013" e_length="435"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33929" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33799" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33791" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33787" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33785" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33785" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33785" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33785" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33785" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33785" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33785" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33785" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33785" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33785" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33781" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33781" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33781" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33778" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33778" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33775" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33775" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33775" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33775" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33774" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33774" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33774" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33774" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33767" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33767" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33766" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33759" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33745" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33616" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33608" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33571" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30954" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30921" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29664" stop="29576"/>
              <exon start="29447" stop="29132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29651" stop="29576"/>
              <exon start="29447" stop="29132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29638" stop="29576"/>
              <exon start="29447" stop="29023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29632" stop="29576"/>
              <exon start="29447" stop="29048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29364" stop="29023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29330" stop="29029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACCTGTCACATCTTCAAAGTACTAGGGGGTTCTAAGTGAAAATTACCTCTCACTGATACGTTACAGATCAAAAGCACTTTCTCATTTTTCTTTCACTGCTATATATATAAATGAAAATGGAGTCGTAATTGTTTCTTCACCAGTTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAG : GGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG : GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG : GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG : GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTTGCATCTGCACTTTAGT</gDNA_template>
            <first_frame> Y  L  S  H  L  Q  S  T  R  G  F  *  V  K  I  T  S  H  *  Y  V  T  D  Q  K  H  F  L  I  F  L  S  L  L  Y  I  *  M  K  M  E  S  *  L  F  L  H  Q  F  Q  N  S  E  L  Q  Y  R  R  A  *  E  D  L  *   : G  I  W  S  A  M  A  S  K  R  I  L  K  E  L  K  D  L  Q  K  D  P  P  T  S  C  S  A   : G  P  V  A  E  D  M  F  H  W  Q  A  T  I  M  G  P  A  D  S  P  Y  S  G  G  V  F  L  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  K  V  F  H  P  N  I  N  S  N  G  S  I  C  L  D  I  L  K  E  Q  W  S  P  A  L  T  I  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  Y  K  T  D  R  S  K  Y  E  T  T  A  R  S  W  T  Q  K  F  A  M  G  *  L  L  *  P  S  L  S  L  L  W  Y  F  V  L  S  I  E  *  L  L  *  P  S  G  S  D  S  L  L  W  Y  L  V  V  Y  I  L  C  I  M  K  L  C  S  Y  A  *  S  K  L  K  R  R  E  S  R  T  G  S  S  *  N  N  L  I  F  S  L  L  A  R  M  L  S  V  M  V  L  K  L  L  C  W  V  Q  S  M  H  F  N  P  L  H  L  H  F  S </first_frame>
            <second_frame>  T  C  H  I  F  K  V  L  G  G  S  K  *  K  L  P  L  T  D  T  L  Q  I  K  S  T  F  S  F  F  F  H  C  Y  I  Y  K  *  K  W  S  R  N  C  F  F  T  S  S  R  I  L  N  C  S  I  V  G  L  R  R  I  S  E  :  G  F  G  L  L  W  H  P  S  G  F  S  R  S  L  R  I  S  R  K  I  L  L  P  L  A  V  L  :  A  Q  *  L  K  I  C  S  I  G  K  Q  Q  S  W  V  Q  L  T  V  P  I  L  V  E  C  F  L  L  L  F  I  F  H  L  T  I  H  S  S  H  Q  R :   *  L  S  G  Q  R  F  S  T  R  T  S  I  A  M  A  A  F  A  L  T  F  *  R  N  S  G  A  L  H  L  P  S  P  R :   Y  C  S  L  S  V  L  C  *  Q  T  L  I  P  M  T  L  W  C  R  R  L  L  I  C  T  K  L  I  G  A  S  M  R  Q  L  P  G  A  G  L  K  N  L  P  W  D  S  C  C  D  H  L  C  P  C  C  G  I  L  Y  Y  L  S  N  S  C  C  D  H  R  G  L  I  P  C  C  G  I  *  *  F  I  Y  Y  V  L  *  N  C  V  L  M  H  N  Q  N  L  K  G  G  K  V  E  Q  V  R  R  E  T  I  *  F  S  L  C  L  Q  E  C  Y  Q  L  W  C  *  N  S  Y  V  G  F  K  V  C  I  L  T  L  C  I  C  T  L   </second_frame>
            <third_frame>   P  V  T  S  S  K  Y  *  G  V  L  S  E  N  Y  L  S  L  I  R  Y  R  S  K  A  L  S  H  F  S  F  T  A  I  Y  I  N  E  N  G  V  V  I  V  S  S  P  V  P  E  F  *  I  A  V  S  *  G  L  G  G  S  L  R :   D  L  V  C  Y  G  I  Q  A  D  S  Q  G  A  *  G  S  P  E  R  S  S  Y  L  L  Q  C  W :   P  S  S  *  R  Y  V  P  L  A  S  N  N  H  G  S  S  *  Q  S  L  F  W  W  S  V  S  C  Y  Y  S  F  S  T  *  L  S  I  Q  A  T  K   : G  S  F  Q  D  K  G  F  P  P  E  H  Q  *  Q  W  Q  H  L  P  *  H  F  E  G  T  V  E  P  C  T  Y  H  L  Q   : G  T  A  L  Y  L  F  S  A  D  R  P  *  S  R  *  P  F  G  A  G  D  C  S  Y  V  Q  N  *  *  E  Q  V  *  D  N  C  P  E  L  D  S  K  I  C  H  G  I  V  A  V  T  I  S  V  P  A  V  V  F  C  I  I  Y  R  I  V  A  V  T  I  G  V  *  F  P  A  V  V  F  S  S  L  Y  I  M  Y  Y  E  I  V  F  L  C  I  I  K  T  *  K  A  G  K  S  N  R  F  V  V  K  Q  F  D  F  L  F  A  C  K  N  V  I  S  Y  G  V  K  T  L  M  L  G  S  K  Y  A  F  *  P  F  A  S  A  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33737" stop="33535"/>
                    <exon start="30996" stop="30869"/>
                    <exon start="29680" stop="29576"/>
                    <exon start="29447" stop="29304"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIWSAMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKFAMG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33939" e_stop="33737"/>
            <exon e_start="33622" e_stop="33535"/>
            <exon e_start="30996" e_stop="30869"/>
            <exon e_start="29680" e_stop="29576"/>
            <exon e_start="29447" e_stop="29023"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.741" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.932" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33939" e_stop="33737" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.741">
            <gDNA_intron_boundary i_start="33736" i_stop="33623" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33622" e_stop="33535" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="33534" i_stop="30997" i_length="2538"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30996" e_stop="30869" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.908">
            <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29680" e_stop="29576" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.932">
            <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="29447" e_stop="29023" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33939" stop="33737"/>
              <exon start="33622" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33791" stop="33737"/>
              <exon start="33622" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33785" stop="33737"/>
              <exon start="33622" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33785" stop="33737"/>
              <exon start="33618" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33785" stop="33737"/>
              <exon start="33622" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33777" stop="33737"/>
              <exon start="33622" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33773" stop="33737"/>
              <exon start="33622" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33616" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33608" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33571" stop="33535"/>
              <exon start="30996" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30954" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30921" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29664" stop="29576"/>
              <exon start="29447" stop="29132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29651" stop="29576"/>
              <exon start="29447" stop="29132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29638" stop="29576"/>
              <exon start="29447" stop="29023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29632" stop="29576"/>
              <exon start="29447" stop="29048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29364" stop="29023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29330" stop="29029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAGGGATCTACCTGTCACATCTTCAAAGTACTAGGGGGTTCTAAGTGAAAATTACCTCTCACTGATACGTTACAGATCAAAAGCACTTTCTCATTTTTCTTTCACTGCTATATATATAAATGAAAATGGAGTCGTAATTGTTTCTTCACCAGTTCCAGAATTCTGAATTGCAGTATCGTAGGGCTTAGGAGGATCTCTGAG : TTAGGGATTTGGTCTGCTATGGCATCCAAGCGGATTCTCAAGGAGCTTAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGTGCTG : GCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG : GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG : GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTTGCATCT</gDNA_template>
            <first_frame> L  R  D  L  P  V  T  S  S  K  Y  *  G  V  L  S  E  N  Y  L  S  L  I  R  Y  R  S  K  A  L  S  H  F  S  F  T  A  I  Y  I  N  E  N  G  V  V  I  V  S  S  P  V  P  E  F  *  I  A  V  S  *  G  L  G  G  S  L  S :   *  G  F  G  L  L  W  H  P  S  G  F  S  R  S  L  R  I  S  R  K  I  L  L  P  L  A  V  L  :  A  Q  *  L  K  I  C  S  I  G  K  Q  Q  S  W  V  Q  L  T  V  P  I  L  V  E  C  F  L  L  L  F  I  F  H  L  T  I  H  S  S  H  Q  R :   *  L  S  G  Q  R  F  S  T  R  T  S  I  A  M  A  A  F  A  L  T  F  *  R  N  S  G  A  L  H  L  P  S  P  R :   Y  C  S  L  S  V  L  C  *  Q  T  L  I  P  M  T  L  W  C  R  R  L  L  I  C  T  K  L  I  G  A  S  M  R  Q  L  P  G  A  G  L  K  N  L  P  W  D  S  C  C  D  H  L  C  P  C  C  G  I  L  Y  Y  L  S  N  S  C  C  D  H  R  G  L  I  P  C  C  G  I  *  *  F  I  Y  Y  V  L  *  N  C  V  L  M  H  N  Q  N  L  K  G  G  K  V  E  Q  V  R  R  E  T  I  *  F  S  L  C  L  Q  E  C  Y  Q  L  W  C  *  N  S  Y  V  G  F  K  V  C  I  L  T  L  C  I  </first_frame>
            <second_frame>  *  G  I  Y  L  S  H  L  Q  S  T  R  G  F  *  V  K  I  T  S  H  *  Y  V  T  D  Q  K  H  F  L  I  F  L  S  L  L  Y  I  *  M  K  M  E  S  *  L  F  L  H  Q  F  Q  N  S  E  L  Q  Y  R  R  A  *  E  D  L  *   : V  R  D  L  V  C  Y  G  I  Q  A  D  S  Q  G  A  *  G  S  P  E  R  S  S  Y  L  L  Q  C  W :   P  S  S  *  R  Y  V  P  L  A  S  N  N  H  G  S  S  *  Q  S  L  F  W  W  S  V  S  C  Y  Y  S  F  S  T  *  L  S  I  Q  A  T  K   : G  S  F  Q  D  K  G  F  P  P  E  H  Q  *  Q  W  Q  H  L  P  *  H  F  E  G  T  V  E  P  C  T  Y  H  L  Q   : G  T  A  L  Y  L  F  S  A  D  R  P  *  S  R  *  P  F  G  A  G  D  C  S  Y  V  Q  N  *  *  E  Q  V  *  D  N  C  P  E  L  D  S  K  I  C  H  G  I  V  A  V  T  I  S  V  P  A  V  V  F  C  I  I  Y  R  I  V  A  V  T  I  G  V  *  F  P  A  V  V  F  S  S  L  Y  I  M  Y  Y  E  I  V  F  L  C  I  I  K  T  *  K  A  G  K  S  N  R  F  V  V  K  Q  F  D  F  L  F  A  C  K  N  V  I  S  Y  G  V  K  T  L  M  L  G  S  K  Y  A  F  *  P  F  A  S </second_frame>
            <third_frame>   K  G  S  T  C  H  I  F  K  V  L  G  G  S  K  *  K  L  P  L  T  D  T  L  Q  I  K  S  T  F  S  F  F  F  H  C  Y  I  Y  K  *  K  W  S  R  N  C  F  F  T  S  S  R  I  L  N  C  S  I  V  G  L  R  R  I  S  E  :  L  G  I  W  S  A  M  A  S  K  R  I  L  K  E  L  K  D  L  Q  K  D  P  P  T  S  C  S  A   : G  P  V  A  E  D  M  F  H  W  Q  A  T  I  M  G  P  A  D  S  P  Y  S  G  G  V  F  L  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  K  V  F  H  P  N  I  N  S  N  G  S  I  C  L  D  I  L  K  E  Q  W  S  P  A  L  T  I  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  Y  K  T  D  R  S  K  Y  E  T  T  A  R  S  W  T  Q  K  F  A  M  G  *  L  L  *  P  S  L  S  L  L  W  Y  F  V  L  S  I  E  *  L  L  *  P  S  G  S  D  S  L  L  W  Y  L  V  V  Y  I  L  C  I  M  K  L  C  S  Y  A  *  S  K  L  K  R  R  E  S  R  T  G  S  S  *  N  N  L  I  F  S  L  L  A  R  M  L  S  V  M  V  L  K  L  L  C  W  V  Q  S  M  H  F  N  P  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33814" stop="33737"/>
                    <exon start="33622" stop="33535"/>
                    <exon start="30996" stop="30869"/>
                    <exon start="29680" stop="29576"/>
                    <exon start="29447" stop="29304"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KWSRNCFFTSSRILNCSIVGLRRISELGIWSAMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKFAMG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="30998" e_stop="30869"/>
            <exon e_start="29680" e_stop="29576"/>
            <exon e_start="29447" e_stop="29023"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.908" e_score="0.992"/>
          <exon-intron don_prob="0.982" acc_prob="0.932" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="30998" e_stop="30869" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.908">
            <gDNA_intron_boundary i_start="30868" i_stop="29681" i_length="1188"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29680" e_stop="29576" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.932">
            <gDNA_intron_boundary i_start="29575" i_stop="29448" i_length="128"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="29447" e_stop="29023" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30998" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30954" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30921" stop="30869"/>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29680" stop="29576"/>
              <exon start="29447" stop="29082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29664" stop="29576"/>
              <exon start="29447" stop="29132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29651" stop="29576"/>
              <exon start="29447" stop="29132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29638" stop="29576"/>
              <exon start="29447" stop="29023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29632" stop="29576"/>
              <exon start="29447" stop="29048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29364" stop="29023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29330" stop="29029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATCATGGGTCCAGCTGACAGTCCCTATTCTGGTGGAGTGTTTCTTGTTACTATTCATTTTCCACCTGACTATCCATTCAAGCCACCAAAG : GTAGCTTTCAGGACAAAGGTTTTCCACCCGAACATCAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGCCCTGCACTTACCATCTCCAAG : GTACTGCTCTCTATCTGTTCTCTGCTGACAGACCCTAATCCCGATGACCCTTTGGTGCCGGAGATTGCTCATATGTACAAAACTGATAGGAGCAAGTATGAGACAACTGCCCGGAGCTGGACTCAAAAATTTGCCATGGGATAGTTGCTGTGACCATCTCTGTCCCTGCTGTGGTATTTTGTATTATCTATCGAATAGTTGCTGTGACCATCGGGGTCTGATTCCCTGCTGTGGTATTTAGTAGTTTATATATTATGTATTATGAAATTGTGTTCTTATGCATAATCAAAACTTAAAAGGCGGGAAAGTCGAACAGGTTCGTCGTGAAACAATTTGATTTTCTCTTTGCTTGCAAGAATGTTATCAGTTATGGTGTTAAAACTCTTATGTTGGGTTCAAAGTATGCATTTTAACCCTTTGCATCT</gDNA_template>
            <first_frame> R  P  S  S  *  R  Y  V  P  L  A  S  N  N  H  G  S  S  *  Q  S  L  F  W  W  S  V  S  C  Y  Y  S  F  S  T  *  L  S  I  Q  A  T  K   : G  S  F  Q  D  K  G  F  P  P  E  H  Q  *  Q  W  Q  H  L  P  *  H  F  E  G  T  V  E  P  C  T  Y  H  L  Q   : G  T  A  L  Y  L  F  S  A  D  R  P  *  S  R  *  P  F  G  A  G  D  C  S  Y  V  Q  N  *  *  E  Q  V  *  D  N  C  P  E  L  D  S  K  I  C  H  G  I  V  A  V  T  I  S  V  P  A  V  V  F  C  I  I  Y  R  I  V  A  V  T  I  G  V  *  F  P  A  V  V  F  S  S  L  Y  I  M  Y  Y  E  I  V  F  L  C  I  I  K  T  *  K  A  G  K  S  N  R  F  V  V  K  Q  F  D  F  L  F  A  C  K  N  V  I  S  Y  G  V  K  T  L  M  L  G  S  K  Y  A  F  *  P  F  A  S </first_frame>
            <second_frame>  G  P  V  A  E  D  M  F  H  W  Q  A  T  I  M  G  P  A  D  S  P  Y  S  G  G  V  F  L  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  K  V  F  H  P  N  I  N  S  N  G  S  I  C  L  D  I  L  K  E  Q  W  S  P  A  L  T  I  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  Y  K  T  D  R  S  K  Y  E  T  T  A  R  S  W  T  Q  K  F  A  M  G  *  L  L  *  P  S  L  S  L  L  W  Y  F  V  L  S  I  E  *  L  L  *  P  S  G  S  D  S  L  L  W  Y  L  V  V  Y  I  L  C  I  M  K  L  C  S  Y  A  *  S  K  L  K  R  R  E  S  R  T  G  S  S  *  N  N  L  I  F  S  L  L  A  R  M  L  S  V  M  V  L  K  L  L  C  W  V  Q  S  M  H  F  N  P  L  H   </second_frame>
            <third_frame>   A  Q  *  L  K  I  C  S  I  G  K  Q  Q  S  W  V  Q  L  T  V  P  I  L  V  E  C  F  L  L  L  F  I  F  H  L  T  I  H  S  S  H  Q  R :   *  L  S  G  Q  R  F  S  T  R  T  S  I  A  M  A  A  F  A  L  T  F  *  R  N  S  G  A  L  H  L  P  S  P  R :   Y  C  S  L  S  V  L  C  *  Q  T  L  I  P  M  T  L  W  C  R  R  L  L  I  C  T  K  L  I  G  A  S  M  R  Q  L  P  G  A  G  L  K  N  L  P  W  D  S  C  C  D  H  L  C  P  C  C  G  I  L  Y  Y  L  S  N  S  C  C  D  H  R  G  L  I  P  C  C  G  I  *  *  F  I  Y  Y  V  L  *  N  C  V  L  M  H  N  Q  N  L  K  G  G  K  V  E  Q  V  R  R  E  T  I  *  F  S  L  C  L  Q  E  C  Y  Q  L  W  C  *  N  S  Y  V  G  F  K  V  C  I  L  T  L  C  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30997" stop="30869"/>
                    <exon start="29680" stop="29576"/>
                    <exon start="29447" stop="29304"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPVAEDMFHWQATIMGPADSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKFAMG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="29140" PGL_stop="29731"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29140" e_stop="29449"/>
            <exon e_start="29726" e_stop="29731"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.778" acc_prob="0.800" e_score="0.977"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="29140" e_stop="29449" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.778" acc_prob="0.800">
            <gDNA_intron_boundary i_start="29450" i_stop="29725" i_length="276"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="29726" e_stop="29731" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29140" stop="29449"/>
              <exon start="29726" stop="29731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTCCCGCCTTTTAAGTTTTGATTATGCATAAGAACACAATTTCATAATACATAATATATAAACTACTAAATACCACAGCAGGGAATCAGACCCCGATGGTCACAGCAACTATTCGATAGATAATACAAAATACCACAGCAGGGACAGAGATGGTCACAGCAACTATCCCATGGCAAATTTTTGAGTCCAGCTCCGGGCAGTTGTCTCATACTTGCTCCTATCAGTTTTGTACATATGAGCAATCTCCGGCACCAAAGGGTCATCGGGATTAGGGTCTGTCAGCAGAGAACAGATAGAGAGCAGTACCT : GGGAAA</gDNA_template>
            <first_frame> L  S  R  L  L  S  F  D  Y  A  *  E  H  N  F  I  I  H  N  I  *  T  T  K  Y  H  S  R  E  S  D  P  D  G  H  S  N  Y  S  I  D  N  T  K  Y  H  S  R  D  R  D  G  H  S  N  Y  P  M  A  N  F  *  V  Q  L  R  A  V  V  S  Y  L  L  L  S  V  L  Y  I  *  A  I  S  G  T  K  G  S  S  G  L  G  S  V  S  R  E  Q  I  E  S  S  T   : W  E  </first_frame>
            <second_frame>  F  P  A  F  *  V  L  I  M  H  K  N  T  I  S  *  Y  I  I  Y  K  L  L  N  T  T  A  G  N  Q  T  P  M  V  T  A  T  I  R  *  I  I  Q  N  T  T  A  G  T  E  M  V  T  A  T  I  P  W  Q  I  F  E  S  S  S  G  Q  L  S  H  T  C  S  Y  Q  F  C  T  Y  E  Q  S  P  A  P  K  G  H  R  D  *  G  L  S  A  E  N  R  *  R  A  V  P  :  G  K </second_frame>
            <third_frame>   F  P  P  F  K  F  *  L  C  I  R  T  Q  F  H  N  T  *  Y  I  N  Y  *  I  P  Q  Q  G  I  R  P  R  W  S  Q  Q  L  F  D  R  *  Y  K  I  P  Q  Q  G  Q  R  W  S  Q  Q  L  S  H  G  K  F  L  S  P  A  P  G  S  C  L  I  L  A  P  I  S  F  V  H  M  S  N  L  R  H  Q  R  V  I  G  I  R  V  C  Q  Q  R  T  D  R  E  Q  Y  L :   G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0302G23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="37304" PGL_stop="43728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37304" e_stop="37545"/>
            <exon e_start="37640" e_stop="37740"/>
            <exon e_start="38450" e_stop="38603"/>
            <exon e_start="41602" e_stop="41795"/>
            <exon e_start="41868" e_stop="41967"/>
            <exon e_start="43392" e_stop="43728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.851" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37304" e_stop="37545" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37546" i_stop="37639" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37640" e_stop="37740" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.995">
            <gDNA_intron_boundary i_start="37741" i_stop="38449" i_length="709"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38450" e_stop="38603" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.851">
            <gDNA_intron_boundary i_start="38604" i_stop="41601" i_length="2998"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41602" e_stop="41795" e_length="194"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41796" i_stop="41867" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41868" e_stop="41967" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.920">
            <gDNA_intron_boundary i_start="41968" i_stop="43391" i_length="1424"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="43392" e_stop="43728" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37304" stop="37545"/>
              <exon start="37640" stop="37740"/>
              <exon start="38450" stop="38603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37343" stop="37545"/>
              <exon start="37640" stop="37740"/>
              <exon start="38450" stop="38603"/>
              <exon start="41602" stop="41795"/>
              <exon start="41868" stop="41967"/>
              <exon start="43392" stop="43581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37376" stop="37545"/>
              <exon start="37640" stop="37740"/>
              <exon start="38450" stop="38603"/>
              <exon start="41602" stop="41795"/>
              <exon start="41868" stop="41967"/>
              <exon start="43392" stop="43578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37464" stop="37545"/>
              <exon start="37640" stop="37740"/>
              <exon start="38450" stop="38512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37695" stop="37740"/>
              <exon start="38450" stop="38603"/>
              <exon start="41602" stop="41795"/>
              <exon start="41868" stop="41967"/>
              <exon start="43392" stop="43587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41644" stop="41795"/>
              <exon start="41868" stop="41967"/>
              <exon start="43392" stop="43728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732344" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATGCGTAAGTGGCATAAGACTACACATACAAATTATCGGAGTTTGCTCATCCAAAAATCTCCATTTCATCGGAAAACGAAGATCGGAGCTTTCGATTAAATCAATTCGTTTTGCCGTTCGATCCTTCCCGATCTCAAAATGAACGACGGAGATGTGTCCAAGCAGATCCATCAGATGGTCAGATTCATCCGCCAAGAAGCGGAGGAGAAGGCCAATGAGATTTCTGTTTCCGCTGAAGAA : GAATTCAACATTGAGAAGTTGCAGTTAGTGGAAGCGGAGAAGAAGAAGATTAGACTGGAATACGAGCGTAAAGAGAAACAAGTTGACGTTCGTAAGAAAAT : AGAGTACTCCATGCAACTCAATGCCTCTCGGATCAAAGTTCTTCAAGCTCAGGATGACTTGATTAGCTCCATGGAGGAAACAGCAGCAAAGGAGATCTTACATGTTAGCAACCACCATAGCTATAAGAAGCTTCTGCATGATCTTATTGTTCAG : AGTTTACTCAGACTTAAAGAGCCTTCTGTCTTACTGCGTTGCCGGAAAGATGATGTAAACCTGGTGGAAGATGTACTAGATGCAGTAAAGGAGGAGTATGCAGAGAAGGCAATGGTCCACACACCTGAGATCATAATTGACCACATCCATCTTCCACCAGCCCCATCTCATCATAATGCGCATGGTCCTTCTTG : TTCTGGAGGAGTGGTACTGGCTTCTCGAGATGGGAAAATTGTGTGTGAGAACACTCTAGATGCCAGATTGGAAGTTGTGTTCCGTAAAAAGCTACCCGAG : ATCCGCAAGTGTCTATTTAGTGGCATTGCTGTCTGAGGGGCTGGAAGTTGATCTATATTTATCACCTGTCTCAGATTCTGAGATAGGCTATTCAGCTGATAAATTATATAATCATCTAAAGGCTTGCTTGTATACAATTTCTTATCTAAAAGACATACTCTGCCCAGTTTTTCTGATACTAAATTCCCAGGTCGTGTTAAGTAATCCTTTATACTCTAGCATTAAGCTTTAATACCCTTTTCCATTATCATGATCTGCAATAAGTGTATGTTGGATGATCTGAGTTTGTTTTGTTAAGGCATAAATAAAACGATATGAGTGGGCGCCCTCTATACTT</gDNA_template>
            <first_frame> P  C  V  S  G  I  R  L  H  I  Q  I  I  G  V  C  S  S  K  N  L  H  F  I  G  K  R  R  S  E  L  S  I  K  S  I  R  F  A  V  R  S  F  P  I  S  K  *  T  T  E  M  C  P  S  R  S  I  R  W  S  D  S  S  A  K  K  R  R  R  R  P  M  R  F  L  F  P  L  K  K :   N  S  T  L  R  S  C  S  *  W  K  R  R  R  R  R  L  D  W  N  T  S  V  K  R  N  K  L  T  F  V  R  K   : *  S  T  P  C  N  S  M  P  L  G  S  K  F  F  K  L  R  M  T  *  L  A  P  W  R  K  Q  Q  Q  R  R  S  Y  M  L  A  T  T  I  A  I  R  S  F  C  M  I  L  L  F  R :   V  Y  S  D  L  K  S  L  L  S  Y  C  V  A  G  K  M  M  *  T  W  W  K  M  Y  *  M  Q  *  R  R  S  M  Q  R  R  Q  W  S  T  H  L  R  S  *  L  T  T  S  I  F  H  Q  P  H  L  I  I  M  R  M  V  L  L   : V  L  E  E  W  Y  W  L  L  E  M  G  K  L  C  V  R  T  L  *  M  P  D  W  K  L  C  S  V  K  S  Y  P  R :   S  A  S  V  Y  L  V  A  L  L  S  E  G  L  E  V  D  L  Y  L  S  P  V  S  D  S  E  I  G  Y  S  A  D  K  L  Y  N  H  L  K  A  C  L  Y  T  I  S  Y  L  K  D  I  L  C  P  V  F  L  I  L  N  S  Q  V  V  L  S  N  P  L  Y  S  S  I  K  L  *  Y  P  F  P  L  S  *  S  A  I  S  V  C  W  M  I  *  V  C  F  V  K  A  *  I  K  R  Y  E  W  A  P  S  I  L </first_frame>
            <second_frame>  H  A  *  V  A  *  D  Y  T  Y  K  L  S  E  F  A  H  P  K  I  S  I  S  S  E  N  E  D  R  S  F  R  L  N  Q  F  V  L  P  F  D  P  S  R  S  Q  N  E  R  R  R  C  V  Q  A  D  P  S  D  G  Q  I  H  P  P  R  S  G  G  E  G  Q  *  D  F  C  F  R  *  R   : R  I  Q  H  *  E  V  A  V  S  G  S  G  E  E  E  D  *  T  G  I  R  A  *  R  E  T  S  *  R  S  *  E  N  :  R  V  L  H  A  T  Q  C  L  S  D  Q  S  S  S  S  S  G  *  L  D  *  L  H  G  G  N  S  S  K  G  D  L  T  C  *  Q  P  P  *  L  *  E  A  S  A  *  S  Y  C  S   : E  F  T  Q  T  *  R  A  F  C  L  T  A  L  P  E  R  *  C  K  P  G  G  R  C  T  R  C  S  K  G  G  V  C  R  E  G  N  G  P  H  T  *  D  H  N  *  P  H  P  S  S  T  S  P  I  S  S  *  C  A  W  S  F  L  :  F  W  R  S  G  T  G  F  S  R  W  E  N  C  V  *  E  H  S  R  C  Q  I  G  S  C  V  P  *  K  A  T  R   : D  P  Q  V  S  I  *  W  H  C  C  L  R  G  W  K  L  I  Y  I  Y  H  L  S  Q  I  L  R  *  A  I  Q  L  I  N  Y  I  I  I  *  R  L  A  C  I  Q  F  L  I  *  K  T  Y  S  A  Q  F  F  *  Y  *  I  P  R  S  C  *  V  I  L  Y  T  L  A  L  S  F  N  T  L  F  H  Y  H  D  L  Q  *  V  Y  V  G  *  S  E  F  V  L  L  R  H  K  *  N  D  M  S  G  R  P  L  Y   </second_frame>
            <third_frame>   M  R  K  W  H  K  T  T  H  T  N  Y  R  S  L  L  I  Q  K  S  P  F  H  R  K  T  K  I  G  A  F  D  *  I  N  S  F  C  R  S  I  L  P  D  L  K  M  N  D  G  D  V  S  K  Q  I  H  Q  M  V  R  F  I  R  Q  E  A  E  E  K  A  N  E  I  S  V  S  A  E  E  :  E  F  N  I  E  K  L  Q  L  V  E  A  E  K  K  K  I  R  L  E  Y  E  R  K  E  K  Q  V  D  V  R  K  K  I :   E  Y  S  M  Q  L  N  A  S  R  I  K  V  L  Q  A  Q  D  D  L  I  S  S  M  E  E  T  A  A  K  E  I  L  H  V  S  N  H  H  S  Y  K  K  L  L  H  D  L  I  V  Q  :  S  L  L  R  L  K  E  P  S  V  L  L  R  C  R  K  D  D  V  N  L  V  E  D  V  L  D  A  V  K  E  E  Y  A  E  K  A  M  V  H  T  P  E  I  I  I  D  H  I  H  L  P  P  A  P  S  H  H  N  A  H  G  P  S  C :   S  G  G  V  V  L  A  S  R  D  G  K  I  V  C  E  N  T  L  D  A  R  L  E  V  V  F  R  K  K  L  P  E  :  I  R  K  C  L  F  S  G  I  A  V  *  G  A  G  S  *  S  I  F  I  T  C  L  R  F  *  D  R  L  F  S  *  *  I  I  *  S  S  K  G  L  L  V  Y  N  F  L  S  K  R  H  T  L  P  S  F  S  D  T  K  F  P  G  R  V  K  *  S  F  I  L  *  H  *  A  L  I  P  F  S  I  I  M  I  C  N  K  C  M  L  D  D  L  S  L  F  C  *  G  I  N  K  T  I  *  V  G  A  L  Y  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37405" stop="37545"/>
                    <exon start="37640" stop="37740"/>
                    <exon start="38450" stop="38603"/>
                    <exon start="41602" stop="41795"/>
                    <exon start="41868" stop="41967"/>
                    <exon start="43392" stop="43427"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INSFCRSILPDLKMNDGDVSKQIHQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRLEYERKEKQVDVRKKIEYSMQLNASRIKVLQAQDDLISSMEETAAKEILHVSNHHSYKKLLHDLIVQSLLRLKEPSVLLRCRKDDVNLVEDVLDAVKEEYAEKAMVHTPEIIIDHIHLPPAPSHHNAHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRKCLFSGIAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37304" e_stop="37545"/>
            <exon e_start="37640" e_stop="37740"/>
            <exon e_start="38450" e_stop="38603"/>
            <exon e_start="41602" e_stop="41795"/>
            <exon e_start="41868" e_stop="41967"/>
            <exon e_start="43392" e_stop="43573"/>
            <exon e_start="43690" e_stop="43701"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.851" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.804" e_score="0.989"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37304" e_stop="37545" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37546" i_stop="37639" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37640" e_stop="37740" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.995">
            <gDNA_intron_boundary i_start="37741" i_stop="38449" i_length="709"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38450" e_stop="38603" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.851">
            <gDNA_intron_boundary i_start="38604" i_stop="41601" i_length="2998"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41602" e_stop="41795" e_length="194"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41796" i_stop="41867" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41868" e_stop="41967" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.920">
            <gDNA_intron_boundary i_start="41968" i_stop="43391" i_length="1424"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="43392" e_stop="43573" e_length="182"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.804">
            <gDNA_intron_boundary i_start="43574" i_stop="43689" i_length="116"/>
          </intron>
          <exon e_serial="7" e_score="0.667">
            <gDNA_exon_boundary e_start="43690" e_stop="43701" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37304" stop="37545"/>
              <exon start="37640" stop="37740"/>
              <exon start="38450" stop="38603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37353" stop="37545"/>
              <exon start="37640" stop="37740"/>
              <exon start="38450" stop="38603"/>
              <exon start="41602" stop="41795"/>
              <exon start="41868" stop="41967"/>
              <exon start="43392" stop="43573"/>
              <exon start="43690" stop="43701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37464" stop="37545"/>
              <exon start="37640" stop="37740"/>
              <exon start="38450" stop="38512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATGCGTAAGTGGCATAAGACTACACATACAAATTATCGGAGTTTGCTCATCCAAAAATCTCCATTTCATCGGAAAACGAAGATCGGAGCTTTCGATTAAATCAATTCGTTTTGCCGTTCGATCCTTCCCGATCTCAAAATGAACGACGGAGATGTGTCCAAGCAGATCCATCAGATGGTCAGATTCATCCGCCAAGAAGCGGAGGAGAAGGCCAATGAGATTTCTGTTTCCGCTGAAGAA : GAATTCAACATTGAGAAGTTGCAGTTAGTGGAAGCGGAGAAGAAGAAGATTAGACTGGAATACGAGCGTAAAGAGAAACAAGTTGACGTTCGTAAGAAAAT : AGAGTACTCCATGCAACTCAATGCCTCTCGGATCAAAGTTCTTCAAGCTCAGGATGACTTGATTAGCTCCATGGAGGAAACAGCAGCAAAGGAGATCTTACATGTTAGCAACCACCATAGCTATAAGAAGCTTCTGCATGATCTTATTGTTCAG : AGTTTACTCAGACTTAAAGAGCCTTCTGTCTTACTGCGTTGCCGGAAAGATGATGTAAACCTGGTGGAAGATGTACTAGATGCAGTAAAGGAGGAGTATGCAGAGAAGGCAATGGTCCACACACCTGAGATCATAATTGACCACATCCATCTTCCACCAGCCCCATCTCATCATAATGCGCATGGTCCTTCTTG : TTCTGGAGGAGTGGTACTGGCTTCTCGAGATGGGAAAATTGTGTGTGAGAACACTCTAGATGCCAGATTGGAAGTTGTGTTCCGTAAAAAGCTACCCGAG : ATCCGCAAGTGTCTATTTAGTGGCATTGCTGTCTGAGGGGCTGGAAGTTGATCTATATTTATCACCTGTCTCAGATTCTGAGATAGGCTATTCAGCTGATAAATTATATAATCATCTAAAGGCTTGCTTGTATACAATTTCTTATCTAAAAGACATACTCTGCCCAGTTTTTCTGATACTAA : GCATAAATAAAA</gDNA_template>
            <first_frame> P  C  V  S  G  I  R  L  H  I  Q  I  I  G  V  C  S  S  K  N  L  H  F  I  G  K  R  R  S  E  L  S  I  K  S  I  R  F  A  V  R  S  F  P  I  S  K  *  T  T  E  M  C  P  S  R  S  I  R  W  S  D  S  S  A  K  K  R  R  R  R  P  M  R  F  L  F  P  L  K  K :   N  S  T  L  R  S  C  S  *  W  K  R  R  R  R  R  L  D  W  N  T  S  V  K  R  N  K  L  T  F  V  R  K   : *  S  T  P  C  N  S  M  P  L  G  S  K  F  F  K  L  R  M  T  *  L  A  P  W  R  K  Q  Q  Q  R  R  S  Y  M  L  A  T  T  I  A  I  R  S  F  C  M  I  L  L  F  R :   V  Y  S  D  L  K  S  L  L  S  Y  C  V  A  G  K  M  M  *  T  W  W  K  M  Y  *  M  Q  *  R  R  S  M  Q  R  R  Q  W  S  T  H  L  R  S  *  L  T  T  S  I  F  H  Q  P  H  L  I  I  M  R  M  V  L  L   : V  L  E  E  W  Y  W  L  L  E  M  G  K  L  C  V  R  T  L  *  M  P  D  W  K  L  C  S  V  K  S  Y  P  R :   S  A  S  V  Y  L  V  A  L  L  S  E  G  L  E  V  D  L  Y  L  S  P  V  S  D  S  E  I  G  Y  S  A  D  K  L  Y  N  H  L  K  A  C  L  Y  T  I  S  Y  L  K  D  I  L  C  P  V  F  L  I  L   : S  I  N  K  </first_frame>
            <second_frame>  H  A  *  V  A  *  D  Y  T  Y  K  L  S  E  F  A  H  P  K  I  S  I  S  S  E  N  E  D  R  S  F  R  L  N  Q  F  V  L  P  F  D  P  S  R  S  Q  N  E  R  R  R  C  V  Q  A  D  P  S  D  G  Q  I  H  P  P  R  S  G  G  E  G  Q  *  D  F  C  F  R  *  R   : R  I  Q  H  *  E  V  A  V  S  G  S  G  E  E  E  D  *  T  G  I  R  A  *  R  E  T  S  *  R  S  *  E  N  :  R  V  L  H  A  T  Q  C  L  S  D  Q  S  S  S  S  S  G  *  L  D  *  L  H  G  G  N  S  S  K  G  D  L  T  C  *  Q  P  P  *  L  *  E  A  S  A  *  S  Y  C  S   : E  F  T  Q  T  *  R  A  F  C  L  T  A  L  P  E  R  *  C  K  P  G  G  R  C  T  R  C  S  K  G  G  V  C  R  E  G  N  G  P  H  T  *  D  H  N  *  P  H  P  S  S  T  S  P  I  S  S  *  C  A  W  S  F  L  :  F  W  R  S  G  T  G  F  S  R  W  E  N  C  V  *  E  H  S  R  C  Q  I  G  S  C  V  P  *  K  A  T  R   : D  P  Q  V  S  I  *  W  H  C  C  L  R  G  W  K  L  I  Y  I  Y  H  L  S  Q  I  L  R  *  A  I  Q  L  I  N  Y  I  I  I  *  R  L  A  C  I  Q  F  L  I  *  K  T  Y  S  A  Q  F  F  *  Y  *  :  A  *  I  K </second_frame>
            <third_frame>   M  R  K  W  H  K  T  T  H  T  N  Y  R  S  L  L  I  Q  K  S  P  F  H  R  K  T  K  I  G  A  F  D  *  I  N  S  F  C  R  S  I  L  P  D  L  K  M  N  D  G  D  V  S  K  Q  I  H  Q  M  V  R  F  I  R  Q  E  A  E  E  K  A  N  E  I  S  V  S  A  E  E  :  E  F  N  I  E  K  L  Q  L  V  E  A  E  K  K  K  I  R  L  E  Y  E  R  K  E  K  Q  V  D  V  R  K  K  I :   E  Y  S  M  Q  L  N  A  S  R  I  K  V  L  Q  A  Q  D  D  L  I  S  S  M  E  E  T  A  A  K  E  I  L  H  V  S  N  H  H  S  Y  K  K  L  L  H  D  L  I  V  Q  :  S  L  L  R  L  K  E  P  S  V  L  L  R  C  R  K  D  D  V  N  L  V  E  D  V  L  D  A  V  K  E  E  Y  A  E  K  A  M  V  H  T  P  E  I  I  I  D  H  I  H  L  P  P  A  P  S  H  H  N  A  H  G  P  S  C :   S  G  G  V  V  L  A  S  R  D  G  K  I  V  C  E  N  T  L  D  A  R  L  E  V  V  F  R  K  K  L  P  E  :  I  R  K  C  L  F  S  G  I  A  V  *  G  A  G  S  *  S  I  F  I  T  C  L  R  F  *  D  R  L  F  S  *  *  I  I  *  S  S  K  G  L  L  V  Y  N  F  L  S  K  R  H  T  L  P  S  F  S  D  T  K :   H  K  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37405" stop="37545"/>
                    <exon start="37640" stop="37740"/>
                    <exon start="38450" stop="38603"/>
                    <exon start="41602" stop="41795"/>
                    <exon start="41868" stop="41967"/>
                    <exon start="43392" stop="43427"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INSFCRSILPDLKMNDGDVSKQIHQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRLEYERKEKQVDVRKKIEYSMQLNASRIKVLQAQDDLISSMEETAAKEILHVSNHHSYKKLLHDLIVQSLLRLKEPSVLLRCRKDDVNLVEDVLDAVKEEYAEKAMVHTPEIIIDHIHLPPAPSHHNAHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRKCLFSGIAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="44143" PGL_stop="43689"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44143" e_stop="43689"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="44143" e_stop="43689" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44143" stop="43689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327551" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGAAGTTGATAGACAAATCATAGTATAATCTTATCTTACAATGAGAAATATATATAGGAGAAGTCTTATATTCCTCATCAACCAAATCCTAAAAGTTCAAATCTTTCCAATAAGCTTAAAAATCAATAAAAATAACTAAATATATTGAAGGATAACTTTTAAAATATGGTAAAGAATAAAGGAGCAACTTTGGAGTTTCCCCAAAATAGTTTGACACATAACTTCATCATGTCAAGATCGAAACTTCATTAGGATCAAGAGCAAATACGAGAGGATTTGCCATCAATAAAGGTATTAATGTCTCACAATAGGAATCCATATATATTAGTGACTATGAATTGGTTCCACACCAACTATGTATGCACCAGACATTACCCTTCCCTCTCATGAAAATCTTATGGTAAACAGCAGTGAAGTATAGAGGGCGCCCACTCATATCGTTTTATTTATGCC</gDNA_template>
            <first_frame> *  E  V  D  R  Q  I  I  V  *  S  Y  L  T  M  R  N  I  Y  R  R  S  L  I  F  L  I  N  Q  I  L  K  V  Q  I  F  P  I  S  L  K  I  N  K  N  N  *  I  Y  *  R  I  T  F  K  I  W  *  R  I  K  E  Q  L  W  S  F  P  K  I  V  *  H  I  T  S  S  C  Q  D  R  N  F  I  R  I  K  S  K  Y  E  R  I  C  H  Q  *  R  Y  *  C  L  T  I  G  I  H  I  Y  *  *  L  *  I  G  S  T  P  T  M  Y  A  P  D  I  T  L  P  S  H  E  N  L  M  V  N  S  S  E  V  *  R  A  P  T  H  I  V  L  F  M   </first_frame>
            <second_frame>  K  K  L  I  D  K  S  *  Y  N  L  I  L  Q  *  E  I  Y  I  G  E  V  L  Y  S  S  S  T  K  S  *  K  F  K  S  F  Q  *  A  *  K  S  I  K  I  T  K  Y  I  E  G  *  L  L  K  Y  G  K  E  *  R  S  N  F  G  V  S  P  K  *  F  D  T  *  L  H  H  V  K  I  E  T  S  L  G  S  R  A  N  T  R  G  F  A  I  N  K  G  I  N  V  S  Q  *  E  S  I  Y  I  S  D  Y  E  L  V  P  H  Q  L  C  M  H  Q  T  L  P  F  P  L  M  K  I  L  W  *  T  A  V  K  Y  R  G  R  P  L  I  S  F  Y  L  C  </second_frame>
            <third_frame>   R  S  *  *  T  N  H  S  I  I  L  S  Y  N  E  K  Y  I  *  E  K  S  Y  I  P  H  Q  P  N  P  K  S  S  N  L  S  N  K  L  K  N  Q  *  K  *  L  N  I  L  K  D  N  F  *  N  M  V  K  N  K  G  A  T  L  E  F  P  Q  N  S  L  T  H  N  F  I  M  S  R  S  K  L  H  *  D  Q  E  Q  I  R  E  D  L  P  S  I  K  V  L  M  S  H  N  R  N  P  Y  I  L  V  T  M  N  W  F  H  T  N  Y  V  C  T  R  H  Y  P  S  L  S  *  K  S  Y  G  K  Q  Q  *  S  I  E  G  A  H  S  Y  R  F  I  Y  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0302G23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="47999" PGL_stop="49398"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47999" e_stop="49398"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="47999" e_stop="49398" e_length="1400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47999" stop="48787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48042" stop="48714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48042" stop="48504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48042" stop="48457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48349" stop="48871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48349" stop="48771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48356" stop="49124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48403" stop="49253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48423" stop="49322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48670" stop="49398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48719" stop="49293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48738" stop="49282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48794" stop="49262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48931" stop="49256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49008" stop="49262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49025" stop="49285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308876" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCGTCTAAGGGGCTTTTGTATTTGGGTATGGGTGTTTCTGGTGGAGAAGAAGGGGCGAGGAATGGACCTTCGCTTATGCCTGGTGGGTCTTATGGGGCTTATACGAATATCAAAGATATTCTTGAGAAGGTTGCAGCTCAAGTTGAGGATGGGCCTTGTGTTACTTATATTGGTGAAGGTGGGTCGGGGAATTTTGTGAAAATGGTGCATAATGGAATTGAATATGGTGATATGCAGTTGATTTCGGAAGCTTATGATGTGTTGAAGAATGCGGGTGGGTTGAGTAATTCTGAATTGGCTGATATTTTCGCCGAATGGAACCGTGGGGAATTGGAGAGCTTTTTGATTGAAATTACAGCGGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAAATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTTCGTTAGACAGTAGGTACATGAGTGGATTGAAGGATGAGAGGGTAGAAGCCTCAGAGATTTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAAGAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAGCTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTATTAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTGGAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTCTAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATACCGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCTTTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCCATTGAAGTAAAAGAAGTTGCTTTTCCTACATTACATTTTGATGCATACAAATTACCTGCACTTTTATTTATATATATGGATTATTACAGCTCCTCACTCTCCAAACGAATATTTTGTATAATTTGAAGATATCATGTTATAG</gDNA_template>
            <first_frame> V  V  *  G  A  F  V  F  G  Y  G  C  F  W  W  R  R  R  G  E  E  W  T  F  A  Y  A  W  W  V  L  W  G  L  Y  E  Y  Q  R  Y  S  *  E  G  C  S  S  S  *  G  W  A  L  C  Y  L  Y  W  *  R  W  V  G  E  F  C  E  N  G  A  *  W  N  *  I  W  *  Y  A  V  D  F  G  S  L  *  C  V  E  E  C  G  W  V  E  *  F  *  I  G  *  Y  F  R  R  M  E  P  W  G  I  G  E  L  F  D  *  N  Y  S  G  Y  I  Q  C  E  G  *  I  D  W  K  W  G  V  S  G  Q  D  F  G  *  D  R  N  E  G  D  G  E  M  D  C  A  A  G  G  G  A  V  Y  C  S  S  D  N  C  C  F  V  R  Q  *  V  H  E  W  I  E  G  *  E  G  R  S  L  R  D  F  *  E  G  R  F  K  G  G  N  K  F  *  Y  *  W  Y  *  Q  C  *  *  E  E  I  D  *  *  C  E  A  G  I  V  C  V  E  N  L  *  L  C  S  G  D  E  F  A  K  G  K  E  L  *  E  R  L  E  F  E  F  G  R  D  G  *  D  L  E  R  W  L  Y  Y  Q  G  S  V  F  G  S  Y  *  E  G  V  S  E  E  S  *  F  G  *  L  D  G  *  H  G  V  R  K  G  D  G  A  E  A  S  C  L  E  E  S  G  G  T  C  C  S  E  G  N  *  C  S  W  N  V  C  *  S  S  V  F  R  H  L  Q  A  F  *  A  S  R  E  P  C  A  G  S  E  G  L  F  R  G  T  Y  L  *  E  S  *  Q  A  R  S  I  P  Y  R  V  G  K  T  C  *  E  S  S  S  V  M  L  L  Q  L  L  R  I  M  I  K  I  S  G  I  S  R  A  L  V  L  F  S  F  S  F  A  V  N  N  V  V  C  L  *  T  L  *  G  L  R  Y  R  N  D  F  F  H  *  S  K  R  S  C  F  S  Y  I  T  F  *  C  I  Q  I  T  C  T  F  I  Y  I  Y  G  L  L  Q  L  L  T  L  Q  T  N  I  L  Y  N  L  K  I  S  C  Y   </first_frame>
            <second_frame>  S  S  K  G  L  L  Y  L  G  M  G  V  S  G  G  E  E  G  A  R  N  G  P  S  L  M  P  G  G  S  Y  G  A  Y  T  N  I  K  D  I  L  E  K  V  A  A  Q  V  E  D  G  P  C  V  T  Y  I  G  E  G  G  S  G  N  F  V  K  M  V  H  N  G  I  E  Y  G  D  M  Q  L  I  S  E  A  Y  D  V  L  K  N  A  G  G  L  S  N  S  E  L  A  D  I  F  A  E  W  N  R  G  E  L  E  S  F  L  I  E  I  T  A  D  I  F  N  V  K  D  E  L  T  G  N  G  E  L  V  D  K  I  L  D  K  T  G  M  K  G  T  G  K  W  T  V  Q  Q  A  A  E  L  S  I  A  A  P  T  I  A  A  S  L  D  S  R  Y  M  S  G  L  K  D  E  R  V  E  A  S  E  I  F  R  K  E  G  L  K  E  E  I  S  S  D  I  N  G  I  S  S  V  D  K  K  R  L  I  D  D  V  R  Q  A  L  Y  A  S  K  I  C  S  Y  A  Q  G  M  N  L  L  R  A  K  S  S  E  K  G  W  N  L  N  L  G  E  M  A  R  I  W  K  G  G  C  I  I  R  A  V  F  L  D  R  I  K  K  A  Y  Q  R  N  P  N  L  A  N  L  M  V  D  T  E  F  A  R  E  M  V  Q  R  Q  A  A  W  R  R  V  V  G  L  A  V  Q  K  G  I  S  V  P  G  M  S  A  S  L  Q  Y  F  D  T  Y  R  R  S  R  L  P  A  N  L  V  Q  A  Q  R  D  Y  F  G  A  H  T  Y  E  R  V  D  K  P  G  A  Y  H  T  E  W  A  K  L  A  R  K  A  R  V  *  C  C  C  S  Y  C  G  L  *  S  K  S  L  V  L  V  A  L  *  Y  F  F  R  L  V  L  Q  L  I  M  L  Y  A  F  E  H  Y  R  A  F  A  I  E  M  T  S  S  I  E  V  K  E  V  A  F  P  T  L  H  F  D  A  Y  K  L  P  A  L  L  F  I  Y  M  D  Y  Y  S  S  S  L  S  K  R  I  F  C  I  I  *  R  Y  H  V  I  </second_frame>
            <third_frame>   R  L  R  G  F  C  I  W  V  W  V  F  L  V  E  K  K  G  R  G  M  D  L  R  L  C  L  V  G  L  M  G  L  I  R  I  S  K  I  F  L  R  R  L  Q  L  K  L  R  M  G  L  V  L  L  I  L  V  K  V  G  R  G  I  L  *  K  W  C  I  M  E  L  N  M  V  I  C  S  *  F  R  K  L  M  M  C  *  R  M  R  V  G  *  V  I  L  N  W  L  I  F  S  P  N  G  T  V  G  N  W  R  A  F  *  L  K  L  Q  R  I  Y  S  M  *  R  M  N  *  L  E  M  G  S  *  W  T  R  F  W  I  R  Q  E  *  R  G  R  G  N  G  L  C  S  R  R  R  S  C  L  L  Q  L  R  Q  L  L  L  R  *  T  V  G  T  *  V  D  *  R  M  R  G  *  K  P  Q  R  F  L  G  R  K  V  *  R  R  K  *  V  L  I  L  M  V  L  A  V  L  I  R  R  D  *  L  M  M  *  G  R  H  C  M  R  R  K  S  V  V  M  L  R  G  *  I  C  *  G  Q  R  A  L  R  K  V  G  I  *  I  W  E  R  W  L  G  F  G  K  V  V  V  L  S  G  Q  C  F  W  I  V  L  R  R  R  I  R  G  I  L  I  W  L  T  *  W  L  T  R  S  S  Q  G  R  W  C  R  G  K  L  L  G  G  E  W  W  D  L  L  F  R  R  E  L  V  F  L  E  C  L  L  V  F  S  I  S  T  P  T  G  V  L  G  F  P  R  T  L  C  R  L  R  G  T  I  S  G  H  I  L  M  R  E  L  T  S  Q  E  H  T  I  P  S  G  Q  N  L  L  G  K  L  E  C  N  A  A  A  A  I  A  D  Y  D  Q  N  L  W  Y  *  S  R  F  S  T  F  F  V  *  F  C  S  *  *  C  C  M  P  L  N  I  I  G  P  S  L  S  K  *  L  L  P  L  K  *  K  K  L  L  F  L  H  Y  I  L  M  H  T  N  Y  L  H  F  Y  L  Y  I  W  I  I  T  A  P  H  S  P  N  E  Y  F  V  *  F  E  D  I  M  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48000" stop="49115"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSKGLLYLGMGVSGGEEGARNGPSLMPGGSYGAYTNIKDILEKVAAQVEDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKNAGGLSNSELADIFAEWNRGELESFLIEITADIFNVKDELTGNGELVDKILDKTGMKGTGKWTVQQAAELSIAAPTIAASLDSRYMSGLKDERVEASEIFRKEGLKEEISSDINGISSVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSSEKGWNLNLGEMARIWKGGCIIRAVFLDRIKKAYQRNPNLANLMVDTEFAREMVQRQAAWRRVVGLAVQKGISVPGMSASLQYFDTYRRSRLPANLVQAQRDYFGAHTYERVDKPGAYHTEWAKLARKARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49173" stop="49382"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFFRLVLQLIMLYAFEHYRAFAIEMTSSIEVKEVAFPTLHFDAYKLPALLFIYMDYYSSSLSKRIFCII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="49339" PGL_stop="48783"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49339" e_stop="48783"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="49339" e_stop="48783" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49339" stop="48783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATCCATATATATAAATAAAAGTGCAGGTAATTTGTATGCATCAAAATGTAATGTAGGAAAAGCAACTTCTTTTACTTCAATGGAAGAAGTCATTTCGATAGCGAAGGCCCTATAATGTTCAAAGGCATACAACATTATTAACTGCAAAACTAAACGAAAAAAGTACTAAAGCGCGACTAATACCAGAGATTTTGATCATAATCCGCAATAGCTGCAGCAGCATTACACTCGAGCTTTCCTAGCAAGTTTTGCCCACTCGGTATGGTATGCTCCTGGCTTGTCAACTCTCTCATAAGTATGTGCCCCGAAATAGTCCCTCTGAGCCTGCACAAGGTTCGCGGGAAGCCTAGAACGCCTGTAGGTGTCGAAATACTGAAGACTAGCAGACATTCCAGGAACACTAATTCCCTTCTGAACAGCAAGTCCCACCACTCTCCTCCAAGCAGCTTGCCTCTGCACCATCTCCCTTGCGAACTCCGTGTCAACCATCAAGTTAGCCAAATTAGGATTCCTCTGATACGCCTTCTTAATACGATCCAAAAACACTGCCCTGAT</gDNA_template>
            <first_frame> *  S  I  Y  I  N  K  S  A  G  N  L  Y  A  S  K  C  N  V  G  K  A  T  S  F  T  S  M  E  E  V  I  S  I  A  K  A  L  *  C  S  K  A  Y  N  I  I  N  C  K  T  K  R  K  K  Y  *  S  A  T  N  T  R  D  F  D  H  N  P  Q  *  L  Q  Q  H  Y  T  R  A  F  L  A  S  F  A  H  S  V  W  Y  A  P  G  L  S  T  L  S  *  V  C  A  P  K  *  S  L  *  A  C  T  R  F  A  G  S  L  E  R  L  *  V  S  K  Y  *  R  L  A  D  I  P  G  T  L  I  P  F  *  T  A  S  P  T  T  L  L  Q  A  A  C  L  C  T  I  S  L  A  N  S  V  S  T  I  K  L  A  K  L  G  F  L  *  Y  A  F  L  I  R  S  K  N  T  A  L   </first_frame>
            <second_frame>  N  P  Y  I  *  I  K  V  Q  V  I  C  M  H  Q  N  V  M  *  E  K  Q  L  L  L  L  Q  W  K  K  S  F  R  *  R  R  P  Y  N  V  Q  R  H  T  T  L  L  T  A  K  L  N  E  K  S  T  K  A  R  L  I  P  E  I  L  I  I  I  R  N  S  C  S  S  I  T  L  E  L  S  *  Q  V  L  P  T  R  Y  G  M  L  L  A  C  Q  L  S  H  K  Y  V  P  R  N  S  P  S  E  P  A  Q  G  S  R  E  A  *  N  A  C  R  C  R  N  T  E  D  *  Q  T  F  Q  E  H  *  F  P  S  E  Q  Q  V  P  P  L  S  S  K  Q  L  A  S  A  P  S  P  L  R  T  P  C  Q  P  S  S  *  P  N  *  D  S  S  D  T  P  S  *  Y  D  P  K  T  L  P  *  </second_frame>
            <third_frame>   I  H  I  Y  K  *  K  C  R  *  F  V  C  I  K  M  *  C  R  K  S  N  F  F  Y  F  N  G  R  S  H  F  D  S  E  G  P  I  M  F  K  G  I  Q  H  Y  *  L  Q  N  *  T  K  K  V  L  K  R  D  *  Y  Q  R  F  *  S  *  S  A  I  A  A  A  A  L  H  S  S  F  P  S  K  F  C  P  L  G  M  V  C  S  W  L  V  N  S  L  I  S  M  C  P  E  I  V  P  L  S  L  H  K  V  R  G  K  P  R  T  P  V  G  V  E  I  L  K  T  S  R  H  S  R  N  T  N  S  L  L  N  S  K  S  H  H  S  P  P  S  S  L  P  L  H  H  L  P  C  E  L  R  V  N  H  Q  V  S  Q  I  R  I  P  L  I  R  L  L  N  T  I  Q  K  H  C  P  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49136" stop="48783"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAIAAAALHSSFPSKFCPLGMVCSWLVNSLISMCPEIVPLSLHKVRGKPRTPVGVEILKTSRHSRNTNSLLNSKSHHSPPSSLPLHHLPCELRVNHQVSQIRIPLIRLLNTIQKHCPD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="68877" PGL_stop="70413"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68877" e_stop="69178"/>
            <exon e_start="69852" e_stop="70021"/>
            <exon e_start="70352" e_stop="70413"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="0.983"/>
          <exon-intron don_prob="1.000" acc_prob="0.909" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="68877" e_stop="69178" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="69179" i_stop="69851" i_length="673"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69852" e_stop="70021" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.909">
            <gDNA_intron_boundary i_start="70022" i_stop="70351" i_length="330"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70352" e_stop="70413" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68877" stop="69178"/>
              <exon start="69852" stop="69886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279285" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68878" stop="69064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68923" stop="69178"/>
              <exon start="69852" stop="70021"/>
              <exon start="70352" stop="70413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329794" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATAATGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAAT : ATTTTATTATTGAATTTTAGGAAAGAAATATTGCCTTTCATTCCAAAGACAGAGGAATGTCCCAAGGAGGAAGACATTAATGATGACTGTTCTGATATTCTTGTTGTTAGTAATTCCATGGCTATGGCAGTTCATAATGAGGATGCAAATGTTGCTCTTGTCGGACACAC : TTATTTGGTTAAGGTGACATTATCTAATGGAACAACATTCACTGCTTATACATATGCTGGAG</gDNA_template>
            <first_frame> Q  *  W  P  W  E  A  Q  I  W  N  P  T  S  *  K  C  M  N  L  A  L  L  K  K  M  R  V  S  K  L  G  F  *  *  A  K  N  S  P  N  *  Y  K  T  G  Y  L  L  T  L  F  F  K  I  N  Y  S  L  L  L  N  S  Q  I  L  K  H  L  Y  I  L  Y  L  K  Q  T  R  T  S  S  Q  I  I  G  M  N  S  K  E  L  L  K  E  V  V  S  P  F  S  I :   F  Y  Y  *  I  L  G  K  K  Y  C  L  S  F  Q  R  Q  R  N  V  P  R  R  K  T  L  M  M  T  V  L  I  F  L  L  L  V  I  P  W  L  W  Q  F  I  M  R  M  Q  M  L  L  L  S  D  T   : L  I  W  L  R  *  H  Y  L  M  E  Q  H  S  L  L  I  H  M  L  E </first_frame>
            <second_frame>  N  N  G  H  G  K  H  K  F  G  T  Q  Q  V  R  N  V  *  I  W  P  F  *  R  R  *  G  F  P  N  W  V  F  D  R  P  K  I  L  Q  I  N  T  K  Q  V  I  Y  *  P  Y  S  S  K  S  I  T  P  F  C  S  T  P  K  F  S  N  T  Y  T  Y  F  I  S  N  K  Q  E  Q  V  P  K  L  L  E  *  T  Q  R  N  C  S  R  K  W  C  P  L  S  Q   : Y  F  I  I  E  F  *  E  R  N  I  A  F  H  S  K  D  R  G  M  S  Q  G  G  R  H  *  *  *  L  F  *  Y  S  C  C  *  *  F  H  G  Y  G  S  S  *  *  G  C  K  C  C  S  C  R  T  H  :  L  F  G  *  G  D  I  I  *  W  N  N  I  H  C  L  Y  I  C  W   </second_frame>
            <third_frame>   I  M  A  M  G  S  T  N  L  E  P  N  K  L  E  M  Y  E  F  G  P  F  E  E  D  E  G  F  Q  I  G  F  L  I  G  Q  K  F  S  K  L  I  Q  N  R  L  S  T  D  L  I  L  Q  N  Q  L  L  P  F  A  Q  L  P  N  S  Q  T  L  I  H  T  L  S  Q  T  N  K  N  K  F  P  N  Y  W  N  E  L  K  G  I  A  Q  G  S  G  V  P  F  L  N  :  I  L  L  L  N  F  R  K  E  I  L  P  F  I  P  K  T  E  E  C  P  K  E  E  D  I  N  D  D  C  S  D  I  L  V  V  S  N  S  M  A  M  A  V  H  N  E  D  A  N  V  A  L  V  G  H  T :   Y  L  V  K  V  T  L  S  N  G  T  T  F  T  A  Y  T  Y  A  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68879" stop="69178"/>
                    <exon start="69852" stop="70021"/>
                    <exon start="70352" stop="70412"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMAMGSTNLEPNKLEMYEFGPFEEDEGFQIGFLIGQKFSKLIQNRLSTDLILQNQLLPFAQLPNSQTLIHTLSQTNKNKFPNYWNELKGIAQGSGVPFLNILLLNFRKEILPFIPKTEECPKEEDINDDCSDILVVSNSMAMAVHNEDANVALVGHTYLVKVTLSNGTTFTAYTYAG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="68878" e_stop="69178"/>
            <exon e_start="69255" e_stop="69265"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.938" e_score="1.000"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68878" e_stop="69178" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.938">
            <gDNA_intron_boundary i_start="69179" i_stop="69254" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.727">
            <gDNA_exon_boundary e_start="69255" e_stop="69265" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68878" stop="69178"/>
              <exon start="69255" stop="69265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68878" stop="69064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339142" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAATGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAAT : GATTTATTAAT</gDNA_template>
            <first_frame> N  N  G  H  G  K  H  K  F  G  T  Q  Q  V  R  N  V  *  I  W  P  F  *  R  R  *  G  F  P  N  W  V  F  D  R  P  K  I  L  Q  I  N  T  K  Q  V  I  Y  *  P  Y  S  S  K  S  I  T  P  F  C  S  T  P  K  F  S  N  T  Y  T  Y  F  I  S  N  K  Q  E  Q  V  P  K  L  L  E  *  T  Q  R  N  C  S  R  K  W  C  P  L  S  Q   : *  F  I  N </first_frame>
            <second_frame>  I  M  A  M  G  S  T  N  L  E  P  N  K  L  E  M  Y  E  F  G  P  F  E  E  D  E  G  F  Q  I  G  F  L  I  G  Q  K  F  S  K  L  I  Q  N  R  L  S  T  D  L  I  L  Q  N  Q  L  L  P  F  A  Q  L  P  N  S  Q  T  L  I  H  T  L  S  Q  T  N  K  N  K  F  P  N  Y  W  N  E  L  K  G  I  A  Q  G  S  G  V  P  F  L  N  :  D  L  L   </second_frame>
            <third_frame>   *  W  P  W  E  A  Q  I  W  N  P  T  S  *  K  C  M  N  L  A  L  L  K  K  M  R  V  S  K  L  G  F  *  *  A  K  N  S  P  N  *  Y  K  T  G  Y  L  L  T  L  F  F  K  I  N  Y  S  L  L  L  N  S  Q  I  L  K  H  L  Y  I  L  Y  L  K  Q  T  R  T  S  S  Q  I  I  G  M  N  S  K  E  L  L  K  E  V  V  S  P  F  S  M :   I  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68879" stop="69178"/>
                    <exon start="69255" stop="69263"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMAMGSTNLEPNKLEMYEFGPFEEDEGFQIGFLIGQKFSKLIQNRLSTDLILQNQLLPFAQLPNSQTLIHTLSQTNKNKFPNYWNELKGIAQGSGVPFLNDLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="83477" PGL_stop="83900"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83477" e_stop="83900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="83477" e_stop="83900" e_length="424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83477" stop="83900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83477" stop="83895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353585" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACAGTTCCATCAAATACGAAGAGAAGACTATTAGAAATGTGTCGGAAACAATTACTATCCTACGTGATTACAGTCGTTGCAGTTTGTTTCTGGTTGGTCGAAGGCCTAATGGCGTTGTACCTCTTGCATTGAGCCAGAGGACTGATTGTCCTGAACTCGGGCCAGTCGGGAGTTTGTTGACTTCACAGGAATACGCCACAACAGCATCAGTTCTGGTGGTGCAACAGTATTATGATAAGTTATATGCAACTAATCCACATCAGAGGGATGTAGCTTCAGTTCCAGAGAACTAATTAGGGGCTCTTTCATTGATCTTTGAATCATAATGACTGTTTTTCATTCTTGACAGTTTGATATAACTATCTTTTTGAGCTGTAATCATCACTTTTTAAATACAAGGATTCTGGTTGCTTTTTTTGTGGA</gDNA_template>
            <first_frame> D  S  S  I  K  Y  E  E  K  T  I  R  N  V  S  E  T  I  T  I  L  R  D  Y  S  R  C  S  L  F  L  V  G  R  R  P  N  G  V  V  P  L  A  L  S  Q  R  T  D  C  P  E  L  G  P  V  G  S  L  L  T  S  Q  E  Y  A  T  T  A  S  V  L  V  V  Q  Q  Y  Y  D  K  L  Y  A  T  N  P  H  Q  R  D  V  A  S  V  P  E  N  *  L  G  A  L  S  L  I  F  E  S  *  *  L  F  F  I  L  D  S  L  I  *  L  S  F  *  A  V  I  I  T  F  *  I  Q  G  F  W  L  L  F  L  W  </first_frame>
            <second_frame>  T  V  P  S  N  T  K  R  R  L  L  E  M  C  R  K  Q  L  L  S  Y  V  I  T  V  V  A  V  C  F  W  L  V  E  G  L  M  A  L  Y  L  L  H  *  A  R  G  L  I  V  L  N  S  G  Q  S  G  V  C  *  L  H  R  N  T  P  Q  Q  H  Q  F  W  W  C  N  S  I  M  I  S  Y  M  Q  L  I  H  I  R  G  M  *  L  Q  F  Q  R  T  N  *  G  L  F  H  *  S  L  N  H  N  D  C  F  S  F  L  T  V  *  Y  N  Y  L  F  E  L  *  S  S  L  F  K  Y  K  D  S  G  C  F  F  C  G </second_frame>
            <third_frame>   Q  F  H  Q  I  R  R  E  D  Y  *  K  C  V  G  N  N  Y  Y  P  T  *  L  Q  S  L  Q  F  V  S  G  W  S  K  A  *  W  R  C  T  S  C  I  E  P  E  D  *  L  S  *  T  R  A  S  R  E  F  V  D  F  T  G  I  R  H  N  S  I  S  S  G  G  A  T  V  L  *  *  V  I  C  N  *  S  T  S  E  G  C  S  F  S  S  R  E  L  I  R  G  S  F  I  D  L  *  I  I  M  T  V  F  H  S  *  Q  F  D  I  T  I  F  L  S  C  N  H  H  F  L  N  T  R  I  L  V  A  F  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83477" stop="83770"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSSIKYEEKTIRNVSETITILRDYSRCSLFLVGRRPNGVVPLALSQRTDCPELGPVGSLLTSQEYATTASVLVVQQYYDKLYATNPHQRDVASVPEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="86556" PGL_stop="85979"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86556" e_stop="85979"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="86556" e_stop="85979" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86556" stop="85979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356200" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGACCGGTACCTTGTTCAGCTGAATCAATAAGATCAACTCCTGTCAAATCTTCTAAGGAATCTGACGGTTTCAGTAACAGCTTTGTAAATAAACCATGTACGACGTCCCCATATACAAGGGTGATGGATAAGGTTTATAGTAGTAGCGACCAGAAGCCGAGGAAGGTAGCCAATGGAGCGGAGCCAAGGAGATGACAGAATGTTGAAGAGCGAACTGATTATGCAGTGAATCAGACAAGAACTGTTACTGTTGCATTTGTCTATTCCTTCTAACTGCTGTTCGACATGCAAAATATGGTAGAATCTGTATAGCCTGTCACATGGAAGAAATGAATGTTGTAATCTTATGCTGGGCTGGGTGACTTGGGATCATTGTGCTTGTACCATTACATGTTACATGGATGCCAGACACATCGATACGCTTTCAGCATTGCCTCAGTGTACATCATTGATGAGGCAATATGGTAGAAAAGTTCTCTATGTAGTCTCTGGTATTCCGGAGGTATTCGTTACGTGTGTGTAAATGTATTCATTATGTGATATCTATGGTCAGGACATTTTCATACTCAATTCTGTTG</gDNA_template>
            <first_frame> G  P  V  P  C  S  A  E  S  I  R  S  T  P  V  K  S  S  K  E  S  D  G  F  S  N  S  F  V  N  K  P  C  T  T  S  P  Y  T  R  V  M  D  K  V  Y  S  S  S  D  Q  K  P  R  K  V  A  N  G  A  E  P  R  R  *  Q  N  V  E  E  R  T  D  Y  A  V  N  Q  T  R  T  V  T  V  A  F  V  Y  S  F  *  L  L  F  D  M  Q  N  M  V  E  S  V  *  P  V  T  W  K  K  *  M  L  *  S  Y  A  G  L  G  D  L  G  S  L  C  L  Y  H  Y  M  L  H  G  C  Q  T  H  R  Y  A  F  S  I  A  S  V  Y  I  I  D  E  A  I  W  *  K  S  S  L  C  S  L  W  Y  S  G  G  I  R  Y  V  C  V  N  V  F  I  M  *  Y  L  W  S  G  H  F  H  T  Q  F  C   </first_frame>
            <second_frame>  D  R  Y  L  V  Q  L  N  Q  *  D  Q  L  L  S  N  L  L  R  N  L  T  V  S  V  T  A  L  *  I  N  H  V  R  R  P  H  I  Q  G  *  W  I  R  F  I  V  V  A  T  R  S  R  G  R  *  P  M  E  R  S  Q  G  D  D  R  M  L  K  S  E  L  I  M  Q  *  I  R  Q  E  L  L  L  L  H  L  S  I  P  S  N  C  C  S  T  C  K  I  W  *  N  L  Y  S  L  S  H  G  R  N  E  C  C  N  L  M  L  G  W  V  T  W  D  H  C  A  C  T  I  T  C  Y  M  D  A  R  H  I  D  T  L  S  A  L  P  Q  C  T  S  L  M  R  Q  Y  G  R  K  V  L  Y  V  V  S  G  I  P  E  V  F  V  T  C  V  *  M  Y  S  L  C  D  I  Y  G  Q  D  I  F  I  L  N  S  V  </second_frame>
            <third_frame>   T  G  T  L  F  S  *  I  N  K  I  N  S  C  Q  I  F  *  G  I  *  R  F  Q  *  Q  L  C  K  *  T  M  Y  D  V  P  I  Y  K  G  D  G  *  G  L  *  *  *  R  P  E  A  E  E  G  S  Q  W  S  G  A  K  E  M  T  E  C  *  R  A  N  *  L  C  S  E  S  D  K  N  C  Y  C  C  I  C  L  F  L  L  T  A  V  R  H  A  K  Y  G  R  I  C  I  A  C  H  M  E  E  M  N  V  V  I  L  C  W  A  G  *  L  G  I  I  V  L  V  P  L  H  V  T  W  M  P  D  T  S  I  R  F  Q  H  C  L  S  V  H  H  *  *  G  N  M  V  E  K  F  S  M  *  S  L  V  F  R  R  Y  S  L  R  V  C  K  C  I  H  Y  V  I  S  M  V  R  T  F  S  Y  S  I  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86255" stop="86034"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLYSLSHGRNECCNLMLGWVTWDHCACTITCYMDARHIDTLSALPQCTSLMRQYGRKVLYVVSGIPEVFVTCV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0302G23.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86556" stop="86362"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPVPCSAESIRSTPVKSSKESDGFSNSFVNKPCTTSPYTRVMDKVYSSSDQKPRKVANGAEPRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 269 chains have been computed
$ 
$ memory statistics:
$ 184488 bytes spliced alignments in total
$ 95 spliced alignments have been stored
$ 1941 bytes was the average size of a spliced alignment
$ 19496 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1772 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 277 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 00:15:17
-->
