<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 00:47:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260078" ref_strand="+" ref_description="SGN-E260078 [cLEG-52-L3]">
      <seq>tcaacctgtggctaacccaatcggaaaccgacgccgccgatcccgccggcgagaccaaccccccaaccatagacgtatttgaactatttggttattaacgaagaaaccaaaaatttcaacgaagccacatttactatgtcacgtaacatacagttgtggcaaccaaagctgttgggtcgccataaattgacatttcttgttttttctttataaagaaatactcctcacctaatagtatgagcacattgaaaattttcaactactttctcagttctaaggccacacctctgcactctttatatattcagtatcatttttcgtgtcaaagatatcatagctttatctcctcgcaacttcgcctcttatcctccgctacaagtagtataagctatatggagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3419" stop="4787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3719" g_stop="4090" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4091" i_stop="4458" i_length="368">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4459" g_stop="4487" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="401" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E260078" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3719" e_stop="4090"/>
          <exon e_start="4459" e_stop="4487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCTGTGGCTAACCCAATCGGAAACCGACGCCGCCGATCCCGCCGGCGAGACCAACCCCCCAACCATAGACGTATTTGAACTATTTGGTTATTAATGAAGAAACCAAAAATTTCAACGAAGCCACATTTACTATGTCACGTAACATACAGTTGTGGCAACCAAAGCTGTTGGGTCGCCATAAATTGACATTTCTTGTTTTTTCTTTATAAAGAAATACTCCTCACCTAATAGTATGAGCACATTGAAAATTTTCAACTACTTTCTCAGTTCTAAGGCCACACCTCTGCACTCTTTATATATTCAGTATCATTTTTCGTGTCAAAGATATCATAGCTTTATCTCCTCGCAACTTCGCCTCTTATCCTCCGGTAAGTTGAGGAATTTCGATTATCTCGATATAAGTTATTGTAAATTGGTATGTGTTCATCCAATATAGAAATGGGGTTCACTTGATTTTGAGATTTGGGGTGGTGTTTGTTTGGGAAAATGTTAAAGAAATGGAAGCGTATCAATTGTTTGAAGAAATGTTTGTTTGAGTCAGCTTCACTCGATTATGGATTTTTGACAGCTAGTGCTCGATGAATTAGAAATATGAGAAGATAAAATGATCTTAAAATTTGAAAAAGGGGCAATTTTGATCTTTGGGGATTTCCGACTTTGTTTTCCTTGATCATATTAGGTTTAGGATCAGTAGAAATAAATTATAAGTCTTATGAATTTCATTGGCTATTTTCAGCTACAAGTAGTATAAGCTATATGGAGCTG</genome_strand>
        <mrna_strand>TCAACCTGTGGCTAACCCAATCGGAAACCGACGCCGCCGATCCCGCCGGCGAGACCAACCCCCCAACCATAGACGTATTTGAACTATTTGGTTATTAACGAAGAAACCAAAAATTTCAACGAAGCCACATTTACTATGTCACGTAACATACAGTTGTGGCAACCAAAGCTGTTGGGTCGCCATAAATTGACATTTCTTGTTTTTTCTTTATAAAGAAATACTCCTCACCTAATAGTATGAGCACATTGAAAATTTTCAACTACTTTCTCAGTTCTAAGGCCACACCTCTGCACTCTTTATATATTCAGTATCATTTTTCGTGTCAAAGATATCATAGCTTTATCTCCTCGCAACTTCGCCTCTTATCCTCCG................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTAGTATAAGCTATATGGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746093" ref_strand="+" ref_description="SGN-E746093 [GI|47105309]">
      <seq>gaaaagaaatactcctcacctaatagtatgagcacattgaaaattttcaactactttctcagttctaaggccacacctctgcactctttatatattcagtatcatttttcgtgtcaaagatatcatagctttatctcctcgcaacttcgcctcttatcctccgctacaagtagtataagctatatggagctggtcaaggaagttgccagcaagggacctgaatcgcagaagaatattgcgataagagctgatgaaaagagctacagttacctgcagttgatttcatctgcaaggagaatttcaagtttgttaagcaagctagatcttaaaaccgacaaaggcatcaaagaaaatgaacatcacaaaggagcaagagtagggattgtgtccaaaccttctgctgagttcgttgctggaatactaggaacctggcttagtggaggttgtgcagttcctcttgctctgagctatcctgagagtgaactgctacatgtgatgaatgactcggacatctccataattttgagtactgaagaccaccaagaacttatgaatgcaattgcagcaaaaactggtgctcagttgtctctcattccttcaattcctgatgtgcattcatcaacaaaacatgaccaatcaaaagacatggtttctgacggtcaacaagatctgctagagatcaattcttatggcgagaaccctgcttttatcttgtacaccagcggcacaacagggaaaccaaaaggagttgtgcacacacacaatggagtcttagcacaggtccaaatgttagctaatgcatgggaatacacgcccaaggatcaatttctgcattgtctaccactccatcatgtgcatggacttttcaatgctttgcttgcccctctttatgcaggttccacggtcgacttcgtgccaaaattcagtgtgaggggaatttggcagagatggcgtgaatcatatcctacagatgggactataacagataatgccattacggtgtttactggagttccaactatgtatgcacgattgatacaaggttatgaagcaatggatccagaactaaaaacagcttctgcttcagcagcaaggcacttgcgccttatgatgagtggctcctctgcacttcctctgcccgtcatgcagcagtgggaaaccattactggacaccggttattggaacgttatggcatgactgagtttgtgatggcaatctctaatcccataaacggcaagcgcaaaggaggtactgttggcaagccatttccaggtgtgcaggccaagattcttttggacgatgcgagtagcaatgaccaaactggagttggggagctctgcattaagagcccatcactgttcaaagaatactggaaattacctgaggtaaccaagcagtcatttactgatgatggatatttcaagactggagatactgttactgttgacgaagaggggtattacatcattctaggacgtacaaatgctgatattatgaagtttggtggatacaaattatcagcgttggaaattgaagcagttctgttggagcatcaagctatattagagagctgtgttttaggcttgcctgacaaagactatggcgaagtggtatgtgcaatagttgtgcctgaggctgaagttaaaagaagacgagatgaggagctaaagcctgcactacccttgcacgaactttctgattgggcgaaggagaagcttgccccatacaagataccaactcgtctgtttctgtgggaatttctgcctcgaaatgcgatgggaaaggtaaacaagaaagagctaaaaaggaagctgactgaagatcccaaatgagtcagaagatggagcatcagaaagtaaaatagtgctttaaggtgtcactctatgttcttttacacaaaaaaggtcttaaaagaatataagtccagacagtgactgaagtgaaagtgcaattagtatattaaatctaggaattctaatgagaattgaatttagaaaacatgttaagagttgataaatgaatatccaagataggacaactgagccctactaattctacttgtgatttggaaggatgttgtcttgttggacctgaatattgattttcttctgctatcccatttctataattgcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3630" stop="145106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3928" g_stop="4090" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4091" i_stop="4458" i_length="368">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4459" g_stop="4628" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="333" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4629" i_stop="4894" i_length="266">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4895" g_stop="5068" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="507" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5069" i_stop="5363" i_length="295">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5364" g_stop="5547" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="691" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5548" i_stop="5660" i_length="113">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5661" g_stop="5749" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="780" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5750" i_stop="6279" i_length="530">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6280" g_stop="6349" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="850" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6350" i_stop="6481" i_length="132">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6482" g_stop="6534" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="851" r_stop="903" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="6535" i_stop="6628" i_length="94">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="6629" g_stop="6736" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="904" r_stop="1011" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="6737" i_stop="7331" i_length="595">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="7332" g_stop="7430" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1012" r_stop="1110" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="7431" i_stop="7620" i_length="190">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="7621" g_stop="7713" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1111" r_stop="1203" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="7714" i_stop="7801" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="7802" g_stop="7879" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1204" r_stop="1281" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="7880" i_stop="8040" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="8041" g_stop="8145" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1282" r_stop="1386" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="8146" i_stop="8442" i_length="297">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="8443" g_stop="8533" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1387" r_stop="1477" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="8534" i_stop="9225" i_length="692">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="9226" g_stop="9299" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1478" r_stop="1551" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="9300" i_stop="9437" i_length="138">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.353" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="9438" g_stop="9617" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1552" r_stop="1731" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="9618" i_stop="9901" i_length="284">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="9902" g_stop="9955" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1732" r_stop="1785" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="9956" i_stop="10119" i_length="164">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="10120" g_stop="10487" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1786" r_stop="2153" r_length="368" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E746093" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>2153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3928" e_stop="4090"/>
          <exon e_start="4459" e_stop="4628"/>
          <exon e_start="4895" e_stop="5068"/>
          <exon e_start="5364" e_stop="5547"/>
          <exon e_start="5661" e_stop="5749"/>
          <exon e_start="6280" e_stop="6349"/>
          <exon e_start="6482" e_stop="6534"/>
          <exon e_start="6629" e_stop="6736"/>
          <exon e_start="7332" e_stop="7430"/>
          <exon e_start="7621" e_stop="7713"/>
          <exon e_start="7802" e_stop="7879"/>
          <exon e_start="8041" e_stop="8145"/>
          <exon e_start="8443" e_stop="8533"/>
          <exon e_start="9226" e_stop="9299"/>
          <exon e_start="9438" e_stop="9617"/>
          <exon e_start="9902" e_stop="9955"/>
          <exon e_start="10120" e_stop="10487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGAAATACTCCTCACCTAATAGTATGAGCACATTGAAAATTTTCAACTACTTTCTCAGTTCTAAGGCCACACCTCTGCACTCTTTATATATTCAGTATCATTTTTCGTGTCAAAGATATCATAGCTTTATCTCCTCGCAACTTCGCCTCTTATCCTCCGGTAAGTTGAGGAATTTCGATTATCTCGATATAAGTTATTGTAAATTGGTATGTGTTCATCCAATATAGAAATGGGGTTCACTTGATTTTGAGATTTGGGGTGGTGTTTGTTTGGGAAAATGTTAAAGAAATGGAAGCGTATCAATTGTTTGAAGAAATGTTTGTTTGAGTCAGCTTCACTCGATTATGGATTTTTGACAGCTAGTGCTCGATGAATTAGAAATATGAGAAGATAAAATGATCTTAAAATTTGAAAAAGGGGCAATTTTGATCTTTGGGGATTTCCGACTTTGTTTTCCTTGATCATATTAGGTTTAGGATCAGTAGAAATAAATTATAAGTCTTATGAATTTCATTGGCTATTTTCAGCTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACCGTGAGTTGGAAATGACGAATTATCTATGAATAACTAAAGCTGCATGAATTTGTGTTTCTATTGAATAGTGTAAATTAAATGAAAGTTTTCTTTTCCCAGTTGTAATGTTTAGTCGACAATTATATTGTTTACGAAATTCATTCAATGTGAGTCCTTCACCCCACATTATCTTTTTCATCTGGATATATTGCTCTTCCAATTCCAAGGTCAGTCTACAGAATTTACTTCCGTTATTGCTTTCTGCTCAGTTGCTTCTACTTTTTCAGGACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCGGTCTGTCTCTGAATCTTTGTTCTTCTCCCTCACTGTTTCATGTCAGTAAAGTGTTTTATTGATAGATAATGAAGACACAAAAAAATGAATGTCTTTTGCCTTTTGAAATGCTCAATATTAATGACATAGATTGCATTATTTGTCATGCCTTGCTATCTGTCTGTAGATGATTAGCTCATGTTCAATTAGGCTGAATATTACCTGTCTGCATGATGTAGAAACACTGCAATGTCCTCTTCACTGTTTTTTTCCTCTTTTATGCTTATTTAATTCATTGTGAAACATTGATTTCTAGGACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATGGTGAGATAATGGGTAATTTGTCTGTTTCTCTATATGGTTATATATTTTCCCATTTGAGATGTTTGGAGCTCATCAATAGCATTTTCCTTTGTTCTGTACATGTTATCTTTAAGGCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGAGTCTTAGCACAGGTTGATGTCTGTTCTAGACTTGATATCAGCATTCCCCTGCTTTGTTGGATCTTGATATGATTGATTCTTAGCCTTTATGTCTTCTTTTCAAATTCATTGATTTACTAGAAACATTCCACTTCTACTTCGTGATGTTACACTATAAATTAAGGCTCAGAAGATATCATTCATATCACAGACCTTGGTGTGTCCAATTGAGCAAGTTTGCTTCCCCTTTTTTCTTCCTCAATTAGGCTGTGAATGCATATGTATTCCATAATTCTGAAGGTAGGATAACATGCGATAGTATTTGTATTGCTGAGAGATGATAAGTAACCCAAGTCAGCACCTTGGACTAACTTCTGTTGTAATGAAGAAGAGTCGATATCATTTACTAAAGTGACCTTGCTTAGATCTTGTTTCAGTTGTCAGTAATATTGAGAGGGGTGAGGATTGTCTTTATTGAAGTTTCGATATGAAATACTCTTTTCAGTTTACTGGAAGTTTTGTTGATGTCTGTGCTAACCCTCCTTCCATGTTTGCTGTTTCAGGTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATCATATCCACATTCCTTTATTTTTGTTCCCAATCATGTTGTTTACATAATTCCTGCTTTTGCAATGTGTTTTTGTGTGGGATAAACAATCTCATTTGGACTACAAAACTGGCTGATCCTTAACCTGTACTGTACATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCACGGTATAATTTCACATCGTCAAACTTTTTTCACTACAGCATACATGCTGTCGGATTGGAAATTCATGTTACTATATCCGCTTTTCTCTTTTTGAAGGTCGACTTCGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGGACTATAACAGATAATGCCATTACGGTGTTTACTGGAGTAAGTCAGTTTTAAATAGATTAGTGAAACATTTTTGCAATGGTATGTGATGTTAGTTGATCTGTGAATTTATTATGTTGAGCTTTGCATTCTTAAACTTACCATGGAAAAATGATTTCTCGCTTCAGTTACATAATATGTGCATGAAGCTTTGAGTAAGAATACATGTTTCGTGTTTCTGCATCCCTGAAATGGACTCACAGTGGAAGCCTCTAATAATGTCATCACTTTCTTAATTTATCATGAAACTCCATTGCATCCTGTTTGCATCAAAGCTAAGAATAAGAATACATGGTTTCTCGATTCTTTTGCATAATGCTTTCTTTATGGCTGAGACTAATAATACCATGTCATGATCTGTGATTTCTGTATCCTTGGATAGGAGATACTTACAGCAGAAGCTTCTACTTAATGTCAGATATCTAAGATGTCACTACTCTGATTGTATTTGGGGTATCGATACGGATAACTTTAGCTATTGTGTGTACCTAGCTTGGATTTTCCAACGCTATGTGTCAACTAATAAGTTTGGTAGCGGATCCACCGACTCCTACCCTCCACTCTTTTCTGATTGATTTTTTTTCTAATCCAATAGGTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATGGTAATAGACTTGGTTTCTATTTTGCTGGTGTTTTTGATAAACAACATAAAACATAGTTAGGATCTTAACTGTACAGAGCCTGCTTCCTCATTTTGTTTTGTTTTGATTGAGTATAGAGTGTACTGTTGTCAAAACCTAATGTGTTTTTTAATCATCCCAAATGAGAAAAAACAATGATTTCTGCTTCCAGATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAGGTAAATGTGCTCATAGCCACTTTTAGTATGTAGGATTTTGACTGTTCATTTAATATCTATACTTATGTAAATGGTTAATTTCGTCTAGTTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAGGTTAGTGAGTTCCTTATGTTATGTTCTCAACATCTAATATGCTGCTGCAACAAAGTCCATAAATGCAGCCCAAAATTTTTGTTAGATATATCCCGTATTTATGATAAGGTCTATCTATTTTTCCTGAATAGTCTATCACTTCTTTATTTTGTTTCTGATAGGCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAGGTAATCACTACATAGTAGGGAATTCTACTACTTAAACATCTCCTGCTTTGAATTTTTTTCATGCATTTATGTTAATAGCCATTTGTTTATTTGCTTTCATGAAATAAAGTTATCTTGTACTCTCTCACACACACACCCTTCCCCCCCTCCCTTTGCGCTCTTGAACCATGTCAAGCACTTAGTTTGAATCTATTACTATTTGCAATTGAGGCTAAGTGGCTCTCCAAATTGAAATAGATGACTTCTTATGCCATTTCTCGGTATTGAGCATCTCTTGTACCTGCGAGGATTTTCTAGGTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGACGTAAGCATACTGTCTTCCAAATTTTTTTCTAGTTGTGCTATACCAATTTCATATGGTTTTCTTTGAATTGTTAGTTGCTACTTGTGCTATACCAATTTTATGTATGTTATGTCCCTAGTAAACTTGTATGACCTGCATGAGATTTGAATGGCAACTTCTCTGAAAGCAATTAAGCATAATCTTGTCTCCTTTCCCCTTTTGAATTTGTTCGTACATTAAAAATGACAATGTTGTCTACGTGACTGCTTTCTCAAATGATGAGGTCGAATCACTGAAAATGACTATCTGGCTACTTCGGCTTTTCTGATATAGTAATATCTACCAATCATTGAGCAAGTGCAAGTATGATTGCCATGCACCTAAAATTTCTCAATTTGTAGTTCAAACCCTCAAATGATAGTGTGTGTGTAACTTTGTCTTGTGTGTTCAAGAACCCAAATGGTAGATATAGGTCTGTGAAAGATGTTCATCTAACTAGATTATAGTTGATGTTAGTTTTATCAATAAATATATTTTGAAGACAAAATTCTAATTTATAGAAGTGTTACTTATTAAGTTTATTCGACCTTGGTTCTTTGGCCTGTTGTTTTCCATTCATAAAACAATGCGGTGATGAACGTTCTTTTTCCATCAAGCTGTATCGGTTAGAGAAAAAATTGATTTCTTTTAGAATTGATATTTTTTCTTTTCAGGTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGGAAATTGAAGCAGTTCTGTTGGAGGTTGCTGCTTGTCTATCTATCTATATAAACACCCTTGGTTTCTATCAAATTTTGAATGTCCCACTCTGATATAGCTCTCAAATATATGATTTCAACAGTTGACATTAATCCCGTTTTAATCAAATTTCCTGTTCACAGCATCAAGCTATATTAGAGTGCTGTGTTTTAGGCTTGCCTGACAAAGACTATGGCGAAGTGGTATGTGCAATAGTTGTGCCTGAGGCTGAAGTTAAAAGAAGACGAGATGAGGAGCTAAAGCCTGCACTAACCTTGCACGAACTTTCTGATTGGGCGAAGGAGAAGCTTGCCCCATACAAGGTATCACCCATACTTGTAGAGCTAATTCTTACTGTTGAGCTTATAAAGTCATGTTGGTCCTCCATATATTGAGCTTGGAAAACAAATTCCTTGTTCTAGTACAGTACATGACTGTTTGAATGATGAAGAAACATATAAACGTTGAATTACTTGGAGTAGGAAAACGGACTTCATGCTTGTTTGGTTGATTTTGTTGCTATGATTTGCTTTTCTTGCGATATGTTTTGGTATTGAAGTACTAAGGTGCTTAAGCTAATTCTTGCCACTTTATGACTGTAATCCAGATACCAACTCGTCTGTTTCTGTGGGAATCTCTGCCTCGAAATGCGATGGGAAAGGTGAGATATACCTACTTTTTGACTCCATAGTTTTTTTAGCTGTTTTTAGTAGTGAATAGATATTTGCCTCCCTATTTTCTTTCACTTGTGTTCTTTTTTAATATTTGAATTGAAATAATATTGGTTATAAACAGCAGATTTGATGTCCTTTTTCTGTGTACTAGGTAAACAAGAAAGAGCTAAAAAGGAAGCTGACTGAAGATCCCAAATGAGTCAGAAGATGGAGCATCAGAAAGTAAAATAATGCTTTAAGGTGTCACTCTATGTTCTTTTACACAAAAAAGGTCTTAAAAGAATATAAGTCCAGACAGTGACTGAAGTGAAAGTGCAATTAGTATATTAAATCTAGGAATTCTAATGAGAATTGAATTTAGAAAACATGTTAAGAGTTGATAAATGAATATCCAAGATAGGACAACTGAGCCCTACTAATTCTACTTGTGATTTGGAAGGATGTTGTCTTGTTGGACCTGAATATTGATTTTCTTCTGCTATCCCATTTCTATAATTGTAAAAAGTTATGAAATTTACT</genome_strand>
        <mrna_strand>GAAAAGAAATACTCCTCACCTAATAGTATGAGCACATTGAAAATTTTCAACTACTTTCTCAGTTCTAAGGCCACACCTCTGCACTCTTTATATATTCAGTATCATTTTTCGTGTCAAAGATATCATAGCTTTATCTCCTCGCAACTTCGCCTCTTATCCTCCG................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACC..........................................................................................................................................................................................................................................................................GACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCG.......................................................................................................................................................................................................................................................................................................GACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATG.................................................................................................................GCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGAGTCTTAGCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATC....................................................................................................................................ATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCACG..............................................................................................GTCGACTTCGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGGACTATAACAGATAATGCCATTACGGTGTTTACTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATG..............................................................................................................................................................................................ATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAG........................................................................................TTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAG.................................................................................................................................................................GCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAG.........................................................................................................................................................................................................................................................................................................GTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGGAAATTGAAGCAGTTCTGTTGGAG..........................................................................................................................................CATCAAGCTATATTAGAGAGCTGTGTTTTAGGCTTGCCTGACAAAGACTATGGCGAAGTGGTATGTGCAATAGTTGTGCCTGAGGCTGAAGTTAAAAGAAGACGAGATGAGGAGCTAAAGCCTGCACTACCCTTGCACGAACTTTCTGATTGGGCGAAGGAGAAGCTTGCCCCATACAAG............................................................................................................................................................................................................................................................................................ATACCAACTCGTCTGTTTCTGTGGGAATTTCTGCCTCGAAATGCGATGGGAAAG....................................................................................................................................................................GTAAACAAGAAAGAGCTAAAAAGGAAGCTGACTGAAGATCCCAAATGAGTCAGAAGATGGAGCATCAGAAAGTAAAATAGTGCTTTAAGGTGTCACTCTATGTTCTTTTACACAAAAAAGGTCTTAAAAGAATATAAGTCCAGACAGTGACTGAAGTGAAAGTGCAATTAGTATATTAAATCTAGGAATTCTAATGAGAATTGAATTTAGAAAACATGTTAAGAGTTGATAAATGAATATCCAAGATAGGACAACTGAGCCCTACTAATTCTACTTGTGATTTGGAAGGATGTTGTCTTGTTGGACCTGAATATTGATTTTCTTCTGCTATCCCATTTCTATAATTGCAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261210" ref_strand="+" ref_description="SGN-E261210 [cLEG-65-F19]">
      <seq>ttcaactactttctcagttctaaggccacacctctgcactctttatatattcagtatcatttttcgtgtcaaagatatcatagctttatctcctcgcaacttcgcctcttatcctccgctacaagtagtataagctatatggagctggtcaaggaagttgccagcaagggacctgaatcgcagaagaatattgcgataagagctgatgaaaagagctacagttacctgcagttgatttcatctgcaaggagaatttcaagtttgttaagcaagctagatcttaaaaccgacaaaggcatcaaagaaaatgaacatcacaaaggagcaagagtagggattgtgtccaaaccttctgctgagttcgttgctggaatactaggaacctggcttagtggaggttgtgcagttcctcttgctctgagctatcctgagagtgaactgctacatgtgatgaatgactcggacatctccataattttgagtactgaagaccaccaagaacttatgaatgcaattgcagcaaaaactggtgctcagttgtctctcattccttcaattcctgatgtgcattcatcaacaaaacatgaccaatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3673" stop="5797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3973" g_stop="4090" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4091" i_stop="4458" i_length="368">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4459" g_stop="4628" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="288" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4629" i_stop="4894" i_length="266">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4895" g_stop="5068" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="462" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5069" i_stop="5363" i_length="295">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5364" g_stop="5497" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="596" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E261210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3973" e_stop="4090"/>
          <exon e_start="4459" e_stop="4628"/>
          <exon e_start="4895" e_stop="5068"/>
          <exon e_start="5364" e_stop="5497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTACTTTCTCAGTTCTAAGGCCACACCTCTGCACTCTTTATATATTCAGTATCATTTTTCGTGTCAAAGATATCATAGCTTTATCTCCTCGCAACTTCGCCTCTTATCCTCCGGTAAGTTGAGGAATTTCGATTATCTCGATATAAGTTATTGTAAATTGGTATGTGTTCATCCAATATAGAAATGGGGTTCACTTGATTTTGAGATTTGGGGTGGTGTTTGTTTGGGAAAATGTTAAAGAAATGGAAGCGTATCAATTGTTTGAAGAAATGTTTGTTTGAGTCAGCTTCACTCGATTATGGATTTTTGACAGCTAGTGCTCGATGAATTAGAAATATGAGAAGATAAAATGATCTTAAAATTTGAAAAAGGGGCAATTTTGATCTTTGGGGATTTCCGACTTTGTTTTCCTTGATCATATTAGGTTTAGGATCAGTAGAAATAAATTATAAGTCTTATGAATTTCATTGGCTATTTTCAGCTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACCGTGAGTTGGAAATGACGAATTATCTATGAATAACTAAAGCTGCATGAATTTGTGTTTCTATTGAATAGTGTAAATTAAATGAAAGTTTTCTTTTCCCAGTTGTAATGTTTAGTCGACAATTATATTGTTTACGAAATTCATTCAATGTGAGTCCTTCACCCCACATTATCTTTTTCATCTGGATATATTGCTCTTCCAATTCCAAGGTCAGTCTACAGAATTTACTTCCGTTATTGCTTTCTGCTCAGTTGCTTCTACTTTTTCAGGACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCGGTCTGTCTCTGAATCTTTGTTCTTCTCCCTCACTGTTTCATGTCAGTAAAGTGTTTTATTGATAGATAATGAAGACACAAAAAAATGAATGTCTTTTGCCTTTTGAAATGCTCAATATTAATGACATAGATTGCATTATTTGTCATGCCTTGCTATCTGTCTGTAGATGATTAGCTCATGTTCAATTAGGCTGAATATTACCTGTCTGCATGATGTAGAAACACTGCAATGTCCTCTTCACTGTTTTTTTCCTCTTTTATGCTTATTTAATTCATTGTGAAACATTGATTTCTAGGACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAA</genome_strand>
        <mrna_strand>TTCAACTACTTTCTCAGTTCTAAGGCCACACCTCTGCACTCTTTATATATTCAGTATCATTTTTCGTGTCAAAGATATCATAGCTTTATCTCCTCGCAACTTCGCCTCTTATCCTCCG................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACC..........................................................................................................................................................................................................................................................................GACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCG.......................................................................................................................................................................................................................................................................................................GACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339248" ref_strand="+" ref_description="SGN-E339248 [cTOF-4-I2]">
      <seq>ctactttctcagttctaaggccacacctctgcactctttatatattcagtatcatttttcgtgtcaaagatatcatagctttatctcctcgcaacttcgcctcttatcctccgctacaagtagtataagctatatggagctggtcaaggaagttgccagcaagggacctgaatcgcagaagaatattgcgataagagctgatgaaaagagctacagttacctgcagttgatttcatctgcaaggagaatttcaagtttgttaagcaagctagatcttaaaaccgacaaaggcatcaaagaaaatgaacatcacaaaggagcaagagtagggattgtgtccaaaccttctgctgagttcgttgctggaatactaggaacctggcttagtggaggttgtgcagttcctcttgctctgagctatcctgagagtgaactgctacatgtgatgaatgactcggacatctccataattctgagtactgaagaccaccaagaacttatgaatgcaattgcagcaaaaactggtgctcagttgtctctcattccttcaattcctgatgtgcattcatcaacaaaacatgaccaatcaaaagacatggtttctgacggtcaacaagatctgctagagatcaattcttatggcgagaaccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3678" stop="5853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3978" g_stop="4090" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4091" i_stop="4458" i_length="368">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4459" g_stop="4628" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="283" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4629" i_stop="4894" i_length="266">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4895" g_stop="5068" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="457" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5069" i_stop="5363" i_length="295">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5364" g_stop="5547" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="641" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5548" i_stop="5660" i_length="113">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5661" g_stop="5672" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="653" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E339248" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3978" e_stop="4090"/>
          <exon e_start="4459" e_stop="4628"/>
          <exon e_start="4895" e_stop="5068"/>
          <exon e_start="5364" e_stop="5547"/>
          <exon e_start="5661" e_stop="5672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTTCTCAGTTCTAAGGCCACACCTCTGCACTCTTTATATATTCAGTATCATTTTTCGTGTCAAAGATATCATAGCTTTATCTCCTCGCAACTTCGCCTCTTATCCTCCGGTAAGTTGAGGAATTTCGATTATCTCGATATAAGTTATTGTAAATTGGTATGTGTTCATCCAATATAGAAATGGGGTTCACTTGATTTTGAGATTTGGGGTGGTGTTTGTTTGGGAAAATGTTAAAGAAATGGAAGCGTATCAATTGTTTGAAGAAATGTTTGTTTGAGTCAGCTTCACTCGATTATGGATTTTTGACAGCTAGTGCTCGATGAATTAGAAATATGAGAAGATAAAATGATCTTAAAATTTGAAAAAGGGGCAATTTTGATCTTTGGGGATTTCCGACTTTGTTTTCCTTGATCATATTAGGTTTAGGATCAGTAGAAATAAATTATAAGTCTTATGAATTTCATTGGCTATTTTCAGCTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACCGTGAGTTGGAAATGACGAATTATCTATGAATAACTAAAGCTGCATGAATTTGTGTTTCTATTGAATAGTGTAAATTAAATGAAAGTTTTCTTTTCCCAGTTGTAATGTTTAGTCGACAATTATATTGTTTACGAAATTCATTCAATGTGAGTCCTTCACCCCACATTATCTTTTTCATCTGGATATATTGCTCTTCCAATTCCAAGGTCAGTCTACAGAATTTACTTCCGTTATTGCTTTCTGCTCAGTTGCTTCTACTTTTTCAGGACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCGGTCTGTCTCTGAATCTTTGTTCTTCTCCCTCACTGTTTCATGTCAGTAAAGTGTTTTATTGATAGATAATGAAGACACAAAAAAATGAATGTCTTTTGCCTTTTGAAATGCTCAATATTAATGACATAGATTGCATTATTTGTCATGCCTTGCTATCTGTCTGTAGATGATTAGCTCATGTTCAATTAGGCTGAATATTACCTGTCTGCATGATGTAGAAACACTGCAATGTCCTCTTCACTGTTTTTTTCCTCTTTTATGCTTATTTAATTCATTGTGAAACATTGATTTCTAGGACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATGGTGAGATAATGGGTAATTTGTCTGTTTCTCTATATGGTTATATATTTTCCCATTTGAGATGTTTGGAGCTCATCAATAGCATTTTCCTTTGTTCTGTACATGTTATCTTTAAGGCGAGAACCCTG</genome_strand>
        <mrna_strand>CTACTTTCTCAGTTCTAAGGCCACACCTCTGCACTCTTTATATATTCAGTATCATTTTTCGTGTCAAAGATATCATAGCTTTATCTCCTCGCAACTTCGCCTCTTATCCTCCG................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACC..........................................................................................................................................................................................................................................................................GACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCG.......................................................................................................................................................................................................................................................................................................GACATCTCCATAATTCTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATG.................................................................................................................GCGAGAACCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364871" ref_strand="+" ref_description="SGN-E364871 [cLPT-4-H23]">
      <seq>tcaacttcgcctcttatcctccgctacaagtagtttaagctatatggagctggtcaaggaagttgccagcaagggacctgaatcgcagaagaatattgcgataagagctgatgaaaagagctacagttacctgcagttgatatcatctgctaggagaatttcaaatttgttaagcaagctagatcttaaaaccgacaaaggcatcaaagaaaatgaacatcacaaaggagcaagagtagggattgtggccaaaccttctgctgagttcgttgctggaatactagggacctggcttagtggaggttgtgcagttcctcttgctctgagctatcctgagagtgaactgctacatgtgatgaatgactcggacatctccataattttgagtactgaagaccaccaagaacttatgaatgcaattgcagcaaaaactggtgctcagttgtctctcattccttcaattcccgatgtgcattcatcaacaaaacatgaccaatcaaaagacatggtttctgacggtcaacaagatctgctagagatcaattcctatggcgagaaccctgcttttatcttgtacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3769" stop="5989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4068" g_stop="4090" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4091" i_stop="4458" i_length="368">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4459" g_stop="4628" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="193" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4629" i_stop="4894" i_length="266">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4895" g_stop="5068" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="367" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5069" i_stop="5363" i_length="295">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5364" g_stop="5547" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="551" r_length="184" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5548" i_stop="5660" i_length="113">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5661" g_stop="5689" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="580" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E364871" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4068" e_stop="4090"/>
          <exon e_start="4459" e_stop="4628"/>
          <exon e_start="4895" e_stop="5068"/>
          <exon e_start="5364" e_stop="5547"/>
          <exon e_start="5661" e_stop="5689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTTCGCCTCTTATCCTCCGGTAAGTTGAGGAATTTCGATTATCTCGATATAAGTTATTGTAAATTGGTATGTGTTCATCCAATATAGAAATGGGGTTCACTTGATTTTGAGATTTGGGGTGGTGTTTGTTTGGGAAAATGTTAAAGAAATGGAAGCGTATCAATTGTTTGAAGAAATGTTTGTTTGAGTCAGCTTCACTCGATTATGGATTTTTGACAGCTAGTGCTCGATGAATTAGAAATATGAGAAGATAAAATGATCTTAAAATTTGAAAAAGGGGCAATTTTGATCTTTGGGGATTTCCGACTTTGTTTTCCTTGATCATATTAGGTTTAGGATCAGTAGAAATAAATTATAAGTCTTATGAATTTCATTGGCTATTTTCAGCTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACCGTGAGTTGGAAATGACGAATTATCTATGAATAACTAAAGCTGCATGAATTTGTGTTTCTATTGAATAGTGTAAATTAAATGAAAGTTTTCTTTTCCCAGTTGTAATGTTTAGTCGACAATTATATTGTTTACGAAATTCATTCAATGTGAGTCCTTCACCCCACATTATCTTTTTCATCTGGATATATTGCTCTTCCAATTCCAAGGTCAGTCTACAGAATTTACTTCCGTTATTGCTTTCTGCTCAGTTGCTTCTACTTTTTCAGGACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCGGTCTGTCTCTGAATCTTTGTTCTTCTCCCTCACTGTTTCATGTCAGTAAAGTGTTTTATTGATAGATAATGAAGACACAAAAAAATGAATGTCTTTTGCCTTTTGAAATGCTCAATATTAATGACATAGATTGCATTATTTGTCATGCCTTGCTATCTGTCTGTAGATGATTAGCTCATGTTCAATTAGGCTGAATATTACCTGTCTGCATGATGTAGAAACACTGCAATGTCCTCTTCACTGTTTTTTTCCTCTTTTATGCTTATTTAATTCATTGTGAAACATTGATTTCTAGGACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATGGTGAGATAATGGGTAATTTGTCTGTTTCTCTATATGGTTATATATTTTCCCATTTGAGATGTTTGGAGCTCATCAATAGCATTTTCCTTTGTTCTGTACATGTTATCTTTAAGGCGAGAACCCTGCTTTTATCTTGTACACC</genome_strand>
        <mrna_strand>TCAACTTCGCCTCTTATCCTCCG................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTAGTTTAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATATCATCTGCTAGGAGAATTTCAAATTTGTTAAGCAAGCTAGATCTTAAAACC..........................................................................................................................................................................................................................................................................GACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGGCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGGACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCG.......................................................................................................................................................................................................................................................................................................GACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCCGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCCTATG.................................................................................................................GCGAGAACCCTGCTTTTATCTTGTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334687" ref_strand="+" ref_description="SGN-E334687 [cTOD-23-B14]">
      <seq>caacttcgcctcttatcctccgctacaagtagtataagctatatggagctggtcaaggaagttgccagcaagggacctgaatcgcagaagaatattgcgataagagctgatgaaaagagctacagttacctgcagttgatttcatctgcaaggagaatttcaagtttgttaagcaagctagatcttaaaaccgacaaaggcatcaaagaaaatgaacatcacaaaggagcaagagtagggattgtgtccaaaccttctgctgagttcgttgctggaatactaggaacctggcttagtggagggtgtgccagtcctcttgctctgagctatcctgagagtgaactgctacatgtgatgaatgactcggacatctccataattttgagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3769" stop="5387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4069" g_stop="4090" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4091" i_stop="4458" i_length="368">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4459" g_stop="4628" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="192" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4629" i_stop="4894" i_length="266">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4895" g_stop="5068" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="366" r_length="174" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5069" i_stop="5363" i_length="295">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5364" g_stop="5387" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="390" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E334687" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4069" e_stop="4090"/>
          <exon e_start="4459" e_stop="4628"/>
          <exon e_start="4895" e_stop="5068"/>
          <exon e_start="5364" e_stop="5387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCGCCTCTTATCCTCCGGTAAGTTGAGGAATTTCGATTATCTCGATATAAGTTATTGTAAATTGGTATGTGTTCATCCAATATAGAAATGGGGTTCACTTGATTTTGAGATTTGGGGTGGTGTTTGTTTGGGAAAATGTTAAAGAAATGGAAGCGTATCAATTGTTTGAAGAAATGTTTGTTTGAGTCAGCTTCACTCGATTATGGATTTTTGACAGCTAGTGCTCGATGAATTAGAAATATGAGAAGATAAAATGATCTTAAAATTTGAAAAAGGGGCAATTTTGATCTTTGGGGATTTCCGACTTTGTTTTCCTTGATCATATTAGGTTTAGGATCAGTAGAAATAAATTATAAGTCTTATGAATTTCATTGGCTATTTTCAGCTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACCGTGAGTTGGAAATGACGAATTATCTATGAATAACTAAAGCTGCATGAATTTGTGTTTCTATTGAATAGTGTAAATTAAATGAAAGTTTTCTTTTCCCAGTTGTAATGTTTAGTCGACAATTATATTGTTTACGAAATTCATTCAATGTGAGTCCTTCACCCCACATTATCTTTTTCATCTGGATATATTGCTCTTCCAATTCCAAGGTCAGTCTACAGAATTTACTTCCGTTATTGCTTTCTGCTCAGTTGCTTCTACTTTTTCAGGACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCGGTCTGTCTCTGAATCTTTGTTCTTCTCCCTCACTGTTTCATGTCAGTAAAGTGTTTTATTGATAGATAATGAAGACACAAAAAAATGAATGTCTTTTGCCTTTTGAAATGCTCAATATTAATGACATAGATTGCATTATTTGTCATGCCTTGCTATCTGTCTGTAGATGATTAGCTCATGTTCAATTAGGCTGAATATTACCTGTCTGCATGATGTAGAAACACTGCAATGTCCTCTTCACTGTTTTTTTCCTCTTTTATGCTTATTTAATTCATTGTGAAACATTGATTTCTAGGACATCTCCATAATTTTGAGTACT</genome_strand>
        <mrna_strand>CAACTTCGCCTCTTATCCTCCG................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACC..........................................................................................................................................................................................................................................................................GACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGGTGTGCCAGTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCG.......................................................................................................................................................................................................................................................................................................GACATCTCCATAATTTTGAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301330" ref_strand="+" ref_description="SGN-E301330 [cLEW-24-O11]">
      <seq>ctacaagtagtataagctatatggagctggtcaaggaagttgccagcaagggacctgaatcgcagaagaatattgcgataagagctgatgaaaagagctacagttacctgcagttgatttcatctgcaaggagaatttcaagtttgttaagcaagctagatcttaaaaccgacaaaggcatcaaagaaaatgaacatcacaaaggagcaagagtagggattgtgtccaaaccttctgctgagttcgttgctggaatactaggaacctggcttagtggaggttgtgcagttcctcttgctctgagctatcctgagagtgaactgctacatgtgatgaatgactcggacatctccataattttgagtactgaagaccaccaagaacttatgaatgcaattgcagcaaaaactggtgctcagttgtctctcattccttcaattcctgatgtgcattcatcaacaaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4159" stop="5787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4459" g_stop="4628" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4629" i_stop="4894" i_length="266">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4895" g_stop="5068" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="344" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5069" i_stop="5363" i_length="295">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5364" g_stop="5487" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="468" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E301330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4459" e_stop="4628"/>
          <exon e_start="4895" e_stop="5068"/>
          <exon e_start="5364" e_stop="5487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACCGTGAGTTGGAAATGACGAATTATCTATGAATAACTAAAGCTGCATGAATTTGTGTTTCTATTGAATAGTGTAAATTAAATGAAAGTTTTCTTTTCCCAGTTGTAATGTTTAGTCGACAATTATATTGTTTACGAAATTCATTCAATGTGAGTCCTTCACCCCACATTATCTTTTTCATCTGGATATATTGCTCTTCCAATTCCAAGGTCAGTCTACAGAATTTACTTCCGTTATTGCTTTCTGCTCAGTTGCTTCTACTTTTTCAGGACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCGGTCTGTCTCTGAATCTTTGTTCTTCTCCCTCACTGTTTCATGTCAGTAAAGTGTTTTATTGATAGATAATGAAGACACAAAAAAATGAATGTCTTTTGCCTTTTGAAATGCTCAATATTAATGACATAGATTGCATTATTTGTCATGCCTTGCTATCTGTCTGTAGATGATTAGCTCATGTTCAATTAGGCTGAATATTACCTGTCTGCATGATGTAGAAACACTGCAATGTCCTCTTCACTGTTTTTTTCCTCTTTTATGCTTATTTAATTCATTGTGAAACATTGATTTCTAGGACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATG</genome_strand>
        <mrna_strand>CTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACC..........................................................................................................................................................................................................................................................................GACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCG.......................................................................................................................................................................................................................................................................................................GACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365715" ref_strand="+" ref_description="SGN-E365715 [cLPT-8-E16]">
      <seq>tcttatcctccgctacaagtagtttaagctatatggagctggtcaaggaagttgccagcaagggacctgaatcgcagaagaatattgcgataagagctgatgaaaagagctacagttacctgcagttgatatcatctgctaggagaatttcaaatttgttaagcaagctagatcttaaaaccgacaaaggcatcaaagaaaatgaacatcacaaaggagcaagagtagggattgtggccaaaccttctgctgagttcgttgctggaatactagggacctggcttagtggaggttgtgcagttcctcttgctctgagctatcctgagagtgaactgctacatgtgatgaatgactcggacatctccataattttgagtactgaagaccaccaagaacttatgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4150" stop="5713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4459" g_stop="4628" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="182" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4629" i_stop="4894" i_length="266">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4895" g_stop="5068" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="356" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5069" i_stop="5363" i_length="295">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5364" g_stop="5413" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="406" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E365715" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4459" e_stop="4628"/>
          <exon e_start="4895" e_stop="5068"/>
          <exon e_start="5364" e_stop="5413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACCGTGAGTTGGAAATGACGAATTATCTATGAATAACTAAAGCTGCATGAATTTGTGTTTCTATTGAATAGTGTAAATTAAATGAAAGTTTTCTTTTCCCAGTTGTAATGTTTAGTCGACAATTATATTGTTTACGAAATTCATTCAATGTGAGTCCTTCACCCCACATTATCTTTTTCATCTGGATATATTGCTCTTCCAATTCCAAGGTCAGTCTACAGAATTTACTTCCGTTATTGCTTTCTGCTCAGTTGCTTCTACTTTTTCAGGACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCGGTCTGTCTCTGAATCTTTGTTCTTCTCCCTCACTGTTTCATGTCAGTAAAGTGTTTTATTGATAGATAATGAAGACACAAAAAAATGAATGTCTTTTGCCTTTTGAAATGCTCAATATTAATGACATAGATTGCATTATTTGTCATGCCTTGCTATCTGTCTGTAGATGATTAGCTCATGTTCAATTAGGCTGAATATTACCTGTCTGCATGATGTAGAAACACTGCAATGTCCTCTTCACTGTTTTTTTCCTCTTTTATGCTTATTTAATTCATTGTGAAACATTGATTTCTAGGACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGC</genome_strand>
        <mrna_strand>CTACAAGTAGTTTAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATATCATCTGCTAGGAGAATTTCAAATTTGTTAAGCAAGCTAGATCTTAAAACC..........................................................................................................................................................................................................................................................................GACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGGCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGGACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCG.......................................................................................................................................................................................................................................................................................................GACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300306" ref_strand="+" ref_description="SGN-E300306 [cLEW-17-G8]">
      <seq>gagctggtcaaggaagttgccagcaagggacctgaatcgcagaagaatattgcgataagagctgatgaaaagagctacagttacctgcagttgatttcatctgcaaggagaatttcaagtttgttaagcaagctagatcttaaaaccgacaaaggcatcaaagaaaatgaacatcacaaaggagcaagagtagggattgtgtccaaaccttctgctgagttcgttgctggaatactaggaacctggcttagtggaggttgtgcagttcctcttgctctgagctatcctgagagtgaactgctacatgtgatgaatgactcggacatctccataattttgagtactgaagaccaccaagaacttatgaatgcaattgcagcaaaaactggtgctcagttgtctctcattccttcaattcctgatgtgcattcatcaacaaaacatgaccaatcaaaagacatggtttctgacggtcaacaagatctgctagagatcaattcttatggcgagaaccctgcttttatcttgtacaccagcggcacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4182" stop="6001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4482" g_stop="4628" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4629" i_stop="4894" i_length="266">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4895" g_stop="5068" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="321" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5069" i_stop="5363" i_length="295">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5364" g_stop="5547" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="505" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5548" i_stop="5660" i_length="113">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5661" g_stop="5701" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="546" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E300306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4482" e_stop="4628"/>
          <exon e_start="4895" e_stop="5068"/>
          <exon e_start="5364" e_stop="5547"/>
          <exon e_start="5661" e_stop="5701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACCGTGAGTTGGAAATGACGAATTATCTATGAATAACTAAAGCTGCATGAATTTGTGTTTCTATTGAATAGTGTAAATTAAATGAAAGTTTTCTTTTCCCAGTTGTAATGTTTAGTCGACAATTATATTGTTTACGAAATTCATTCAATGTGAGTCCTTCACCCCACATTATCTTTTTCATCTGGATATATTGCTCTTCCAATTCCAAGGTCAGTCTACAGAATTTACTTCCGTTATTGCTTTCTGCTCAGTTGCTTCTACTTTTTCAGGACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCGGTCTGTCTCTGAATCTTTGTTCTTCTCCCTCACTGTTTCATGTCAGTAAAGTGTTTTATTGATAGATAATGAAGACACAAAAAAATGAATGTCTTTTGCCTTTTGAAATGCTCAATATTAATGACATAGATTGCATTATTTGTCATGCCTTGCTATCTGTCTGTAGATGATTAGCTCATGTTCAATTAGGCTGAATATTACCTGTCTGCATGATGTAGAAACACTGCAATGTCCTCTTCACTGTTTTTTTCCTCTTTTATGCTTATTTAATTCATTGTGAAACATTGATTTCTAGGACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATGGTGAGATAATGGGTAATTTGTCTGTTTCTCTATATGGTTATATATTTTCCCATTTGAGATGTTTGGAGCTCATCAATAGCATTTTCCTTTGTTCTGTACATGTTATCTTTAAGGCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACA</genome_strand>
        <mrna_strand>GAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACC..........................................................................................................................................................................................................................................................................GACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCG.......................................................................................................................................................................................................................................................................................................GACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATG.................................................................................................................GCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209889" ref_strand="+" ref_description="SGN-E209889 [cLEC-52-B15]">
      <seq>aagtttgttaagcaagctagatcttaaaaccgacaaaggcatcaaagaaaatgaacatcacaaaggagcaagagtagggattgtgtccaaaccttctgctgagttcgttgctggaatactaggaacctggcttagtggaggttgtgcagttcctcttgctctgagctatcctgagagtgaactgctacatgtgatgaatgactcggacatctccataattttgagtactgaagaccaccaagaacttatgaatgcaattgcagcaaaaactggtgctcagttgtctctcattccttcaattcctgatgtgcattcatcaacaaaacatgaccaatcaaaagacatggtttctgacggtcaacaagatctgctagagatcaattcttatggcgagaaccctgcttttatcttgtacaccagcggcacaacagggaaaccaaaaggagttgtgcacacacacaatggagtcttagcacaggtccaaatgttagctaatgcatgggaatacacgcccaaggatcaatttctgcattgtctaccactccatcatgtgcatggactttataatgctttgcttgcccctctttatgcaggttccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4298" stop="6833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4598" g_stop="4628" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4629" i_stop="4894" i_length="266">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4895" g_stop="5068" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="205" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5069" i_stop="5363" i_length="295">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5364" g_stop="5547" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="389" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5548" i_stop="5660" i_length="113">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5661" g_stop="5749" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="478" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5750" i_stop="6279" i_length="530">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6280" g_stop="6349" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="548" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6350" i_stop="6481" i_length="132">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6482" g_stop="6533" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="600" r_length="52" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E209889" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4598" e_stop="4628"/>
          <exon e_start="4895" e_stop="5068"/>
          <exon e_start="5364" e_stop="5547"/>
          <exon e_start="5661" e_stop="5749"/>
          <exon e_start="6280" e_stop="6349"/>
          <exon e_start="6482" e_stop="6533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTGTTAAGCAAGCTAGATCTTAAAACCGTGAGTTGGAAATGACGAATTATCTATGAATAACTAAAGCTGCATGAATTTGTGTTTCTATTGAATAGTGTAAATTAAATGAAAGTTTTCTTTTCCCAGTTGTAATGTTTAGTCGACAATTATATTGTTTACGAAATTCATTCAATGTGAGTCCTTCACCCCACATTATCTTTTTCATCTGGATATATTGCTCTTCCAATTCCAAGGTCAGTCTACAGAATTTACTTCCGTTATTGCTTTCTGCTCAGTTGCTTCTACTTTTTCAGGACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCGGTCTGTCTCTGAATCTTTGTTCTTCTCCCTCACTGTTTCATGTCAGTAAAGTGTTTTATTGATAGATAATGAAGACACAAAAAAATGAATGTCTTTTGCCTTTTGAAATGCTCAATATTAATGACATAGATTGCATTATTTGTCATGCCTTGCTATCTGTCTGTAGATGATTAGCTCATGTTCAATTAGGCTGAATATTACCTGTCTGCATGATGTAGAAACACTGCAATGTCCTCTTCACTGTTTTTTTCCTCTTTTATGCTTATTTAATTCATTGTGAAACATTGATTTCTAGGACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATGGTGAGATAATGGGTAATTTGTCTGTTTCTCTATATGGTTATATATTTTCCCATTTGAGATGTTTGGAGCTCATCAATAGCATTTTCCTTTGTTCTGTACATGTTATCTTTAAGGCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGAGTCTTAGCACAGGTTGATGTCTGTTCTAGACTTGATATCAGCATTCCCCTGCTTTGTTGGATCTTGATATGATTGATTCTTAGCCTTTATGTCTTCTTTTCAAATTCATTGATTTACTAGAAACATTCCACTTCTACTTCGTGATGTTACACTATAAATTAAGGCTCAGAAGATATCATTCATATCACAGACCTTGGTGTGTCCAATTGAGCAAGTTTGCTTCCCCTTTTTTCTTCCTCAATTAGGCTGTGAATGCATATGTATTCCATAATTCTGAAGGTAGGATAACATGCGATAGTATTTGTATTGCTGAGAGATGATAAGTAACCCAAGTCAGCACCTTGGACTAACTTCTGTTGTAATGAAGAAGAGTCGATATCATTTACTAAAGTGACCTTGCTTAGATCTTGTTTCAGTTGTCAGTAATATTGAGAGGGGTGAGGATTGTCTTTATTGAAGTTTCGATATGAAATACTCTTTTCAGTTTACTGGAAGTTTTGTTGATGTCTGTGCTAACCCTCCTTCCATGTTTGCTGTTTCAGGTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATCATATCCACATTCCTTTATTTTTGTTCCCAATCATGTTGTTTACATAATTCCTGCTTTTGCAATGTGTTTTTGTGTGGGATAAACAATCTCATTTGGACTACAAAACTGGCTGATCCTTAACCTGTACTGTACATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCAC</genome_strand>
        <mrna_strand>AAGTTTGTTAAGCAAGCTAGATCTTAAAACC..........................................................................................................................................................................................................................................................................GACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCG.......................................................................................................................................................................................................................................................................................................GACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATG.................................................................................................................GCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGAGTCTTAGCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATC....................................................................................................................................ATGTGCATGGACTTTATAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212030" ref_strand="+" ref_description="SGN-E212030 [cLEC-66-H10]">
      <seq>aagtttgttaagcaagctagatcttaaaaccgacaaaggcatcaaagaaaatgaacatcacaaaggagcaagagtagggattgtgtccaaaccttctgctgagttcgttgctggaatactaggaacctggcttagtggaggttgtgcagttcctcttgctctgagctatcctgagagtgaactgctacatgtgatgaatgactcggacatctccataattttgagtactgaagaccaccaagaacttatgaatgcaattgcagcaaaaactggtgctcagttgtctctcattccttcaattcctgatgtgcattcatcaacaaaacatgaccaatcaaaagacatggtttctgacggtcaacaagatctgctagagatcaattcttatggcgagaaccctgcttttatcttgtacaccagcggcacaacagggaaaccaaaaggagttgtgcacacacacaatggagtcttagcacaggtccaaatgttagctaatgcatgggaatacacgcccaaggatcaatttctgcattgtctaccactccatcatgtgcatggacttttcaatgctttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4298" stop="6810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4598" g_stop="4628" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4629" i_stop="4894" i_length="266">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4895" g_stop="5068" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="205" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5069" i_stop="5363" i_length="295">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5364" g_stop="5547" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="389" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5548" i_stop="5660" i_length="113">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5661" g_stop="5749" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="478" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5750" i_stop="6279" i_length="530">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6280" g_stop="6349" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="548" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6350" i_stop="6481" i_length="132">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6482" g_stop="6510" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="577" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E212030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4598" e_stop="4628"/>
          <exon e_start="4895" e_stop="5068"/>
          <exon e_start="5364" e_stop="5547"/>
          <exon e_start="5661" e_stop="5749"/>
          <exon e_start="6280" e_stop="6349"/>
          <exon e_start="6482" e_stop="6510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTGTTAAGCAAGCTAGATCTTAAAACCGTGAGTTGGAAATGACGAATTATCTATGAATAACTAAAGCTGCATGAATTTGTGTTTCTATTGAATAGTGTAAATTAAATGAAAGTTTTCTTTTCCCAGTTGTAATGTTTAGTCGACAATTATATTGTTTACGAAATTCATTCAATGTGAGTCCTTCACCCCACATTATCTTTTTCATCTGGATATATTGCTCTTCCAATTCCAAGGTCAGTCTACAGAATTTACTTCCGTTATTGCTTTCTGCTCAGTTGCTTCTACTTTTTCAGGACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCGGTCTGTCTCTGAATCTTTGTTCTTCTCCCTCACTGTTTCATGTCAGTAAAGTGTTTTATTGATAGATAATGAAGACACAAAAAAATGAATGTCTTTTGCCTTTTGAAATGCTCAATATTAATGACATAGATTGCATTATTTGTCATGCCTTGCTATCTGTCTGTAGATGATTAGCTCATGTTCAATTAGGCTGAATATTACCTGTCTGCATGATGTAGAAACACTGCAATGTCCTCTTCACTGTTTTTTTCCTCTTTTATGCTTATTTAATTCATTGTGAAACATTGATTTCTAGGACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATGGTGAGATAATGGGTAATTTGTCTGTTTCTCTATATGGTTATATATTTTCCCATTTGAGATGTTTGGAGCTCATCAATAGCATTTTCCTTTGTTCTGTACATGTTATCTTTAAGGCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGAGTCTTAGCACAGGTTGATGTCTGTTCTAGACTTGATATCAGCATTCCCCTGCTTTGTTGGATCTTGATATGATTGATTCTTAGCCTTTATGTCTTCTTTTCAAATTCATTGATTTACTAGAAACATTCCACTTCTACTTCGTGATGTTACACTATAAATTAAGGCTCAGAAGATATCATTCATATCACAGACCTTGGTGTGTCCAATTGAGCAAGTTTGCTTCCCCTTTTTTCTTCCTCAATTAGGCTGTGAATGCATATGTATTCCATAATTCTGAAGGTAGGATAACATGCGATAGTATTTGTATTGCTGAGAGATGATAAGTAACCCAAGTCAGCACCTTGGACTAACTTCTGTTGTAATGAAGAAGAGTCGATATCATTTACTAAAGTGACCTTGCTTAGATCTTGTTTCAGTTGTCAGTAATATTGAGAGGGGTGAGGATTGTCTTTATTGAAGTTTCGATATGAAATACTCTTTTCAGTTTACTGGAAGTTTTGTTGATGTCTGTGCTAACCCTCCTTCCATGTTTGCTGTTTCAGGTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATCATATCCACATTCCTTTATTTTTGTTCCCAATCATGTTGTTTACATAATTCCTGCTTTTGCAATGTGTTTTTGTGTGGGATAAACAATCTCATTTGGACTACAAAACTGGCTGATCCTTAACCTGTACTGTACATGTGCATGGACTTTTCAATGCTTTGCTT</genome_strand>
        <mrna_strand>AAGTTTGTTAAGCAAGCTAGATCTTAAAACC..........................................................................................................................................................................................................................................................................GACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCG.......................................................................................................................................................................................................................................................................................................GACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATG.................................................................................................................GCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGAGTCTTAGCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATC....................................................................................................................................ATGTGCATGGACTTTTCAATGCTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209916" ref_strand="+" ref_description="SGN-E209916 [cLEC-52-B4]">
      <seq>aaaaccgacaaaggcatcaaagaaaatgaacatcacaaaggagcaagagtcgggattgtgtccaaaccttctgctgagttcgttgctggaatactaggaacctggcttaatggaggctgtgcagttcctcttgctctgagctatcctgagagtgaactgctacatgtgatgaatgactcggacatctccataattttgagtactgaagaccaccaagaacttatgaatgcaattgcagcaaaaactggtgctcagttgactctcattccttcaattcctgatgtgcattcatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4595" stop="5779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4895" g_stop="5068" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="180" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5069" i_stop="5363" i_length="295">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5364" g_stop="5479" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="296" r_length="116" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E209916" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4895" e_stop="5068"/>
          <exon e_start="5364" e_stop="5479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCGGTCTGTCTCTGAATCTTTGTTCTTCTCCCTCACTGTTTCATGTCAGTAAAGTGTTTTATTGATAGATAATGAAGACACAAAAAAATGAATGTCTTTTGCCTTTTGAAATGCTCAATATTAATGACATAGATTGCATTATTTGTCATGCCTTGCTATCTGTCTGTAGATGATTAGCTCATGTTCAATTAGGCTGAATATTACCTGTCTGCATGATGTAGAAACACTGCAATGTCCTCTTCACTGTTTTTTTCCTCTTTTATGCTTATTTAATTCATTGTGAAACATTGATTTCTAGGACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAAC</genome_strand>
        <mrna_strand>GACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTCGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAATGGAGGCTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCG.......................................................................................................................................................................................................................................................................................................GACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGACTCTCATTCCTTCAATTCCTGATGTGCATTCATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730147" ref_strand="+" ref_description="SGN-E730147 [LA23AH03]">
      <seq>tatctttaaggcgagaaccctgcttttatcttgtacaccagcggcacaacagggaaaccaaaaggagttgtgcacacacacaatggagtcttagcacaggtccaaatgttagctaatgcatgggaatacacgcccaaggatcaatttctgcattgtctaccactccatcatgtgcatggacttttcaatgctttgcttgcccctctttatgcaggttccacggtcgacttcgtgccaaaattcagtgtgaggggaatttggcagagatggcgtgaatcatatcctacagatggtactataacagataatgccattacggtgtttactggagttccaactatgtatgcacgattgatacaaggttatgaagcaatggatccagaactaaaaacagcttctgcttcagcagcaaggcacttgcgccttatgatgagtggctcctctgcacttcctctgcccgtcatgcagcagtgggaaaccattactggacaccggttattggaacgttatggcatgactgagtttgtgatggcaatctctaatcccataaacggcaagcgcaaaggaggtactgttggcaagccatttccaggtgtgcaggccaagattcttttggacgatgcgagtagcaatgaccaaactggagttggggagctctgcattaagagcccatcactgttcaaagaatactggaaattacctgaggtaaccaagcagtcatttactgatgatggatatttcaagactggagatactgttactgttgacgaagaggggtattacatcattctaggacgtaagcatactgtcttccaaatttttttctagttgtgctataccaatttcatatggttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="5351" stop="8894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5651" g_stop="5749" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5750" i_stop="6279" i_length="530">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6280" g_stop="6349" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="169" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6350" i_stop="6481" i_length="132">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6482" g_stop="6534" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="222" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6535" i_stop="6628" i_length="94">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6629" g_stop="6736" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="330" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6737" i_stop="7331" i_length="595">
            <donor d_prob="0.828" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7332" g_stop="7430" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="429" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7431" i_stop="7620" i_length="190">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7621" g_stop="7713" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="522" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7714" i_stop="7801" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="7802" g_stop="7879" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="600" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="7880" i_stop="8040" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="8041" g_stop="8145" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="705" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="8146" i_stop="8442" i_length="297">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="8443" g_stop="8594" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="857" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E730147" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5651" e_stop="5749"/>
          <exon e_start="6280" e_stop="6349"/>
          <exon e_start="6482" e_stop="6534"/>
          <exon e_start="6629" e_stop="6736"/>
          <exon e_start="7332" e_stop="7430"/>
          <exon e_start="7621" e_stop="7713"/>
          <exon e_start="7802" e_stop="7879"/>
          <exon e_start="8041" e_stop="8145"/>
          <exon e_start="8443" e_stop="8594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTTAAGGCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGAGTCTTAGCACAGGTTGATGTCTGTTCTAGACTTGATATCAGCATTCCCCTGCTTTGTTGGATCTTGATATGATTGATTCTTAGCCTTTATGTCTTCTTTTCAAATTCATTGATTTACTAGAAACATTCCACTTCTACTTCGTGATGTTACACTATAAATTAAGGCTCAGAAGATATCATTCATATCACAGACCTTGGTGTGTCCAATTGAGCAAGTTTGCTTCCCCTTTTTTCTTCCTCAATTAGGCTGTGAATGCATATGTATTCCATAATTCTGAAGGTAGGATAACATGCGATAGTATTTGTATTGCTGAGAGATGATAAGTAACCCAAGTCAGCACCTTGGACTAACTTCTGTTGTAATGAAGAAGAGTCGATATCATTTACTAAAGTGACCTTGCTTAGATCTTGTTTCAGTTGTCAGTAATATTGAGAGGGGTGAGGATTGTCTTTATTGAAGTTTCGATATGAAATACTCTTTTCAGTTTACTGGAAGTTTTGTTGATGTCTGTGCTAACCCTCCTTCCATGTTTGCTGTTTCAGGTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATCATATCCACATTCCTTTATTTTTGTTCCCAATCATGTTGTTTACATAATTCCTGCTTTTGCAATGTGTTTTTGTGTGGGATAAACAATCTCATTTGGACTACAAAACTGGCTGATCCTTAACCTGTACTGTACATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCACGGTATAATTTCACATCGTCAAACTTTTTTCACTACAGCATACATGCTGTCGGATTGGAAATTCATGTTACTATATCCGCTTTTCTCTTTTTGAAGGTCGACTTCGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGGACTATAACAGATAATGCCATTACGGTGTTTACTGGAGTAAGTCAGTTTTAAATAGATTAGTGAAACATTTTTGCAATGGTATGTGATGTTAGTTGATCTGTGAATTTATTATGTTGAGCTTTGCATTCTTAAACTTACCATGGAAAAATGATTTCTCGCTTCAGTTACATAATATGTGCATGAAGCTTTGAGTAAGAATACATGTTTCGTGTTTCTGCATCCCTGAAATGGACTCACAGTGGAAGCCTCTAATAATGTCATCACTTTCTTAATTTATCATGAAACTCCATTGCATCCTGTTTGCATCAAAGCTAAGAATAAGAATACATGGTTTCTCGATTCTTTTGCATAATGCTTTCTTTATGGCTGAGACTAATAATACCATGTCATGATCTGTGATTTCTGTATCCTTGGATAGGAGATACTTACAGCAGAAGCTTCTACTTAATGTCAGATATCTAAGATGTCACTACTCTGATTGTATTTGGGGTATCGATACGGATAACTTTAGCTATTGTGTGTACCTAGCTTGGATTTTCCAACGCTATGTGTCAACTAATAAGTTTGGTAGCGGATCCACCGACTCCTACCCTCCACTCTTTTCTGATTGATTTTTTTTCTAATCCAATAGGTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATGGTAATAGACTTGGTTTCTATTTTGCTGGTGTTTTTGATAAACAACATAAAACATAGTTAGGATCTTAACTGTACAGAGCCTGCTTCCTCATTTTGTTTTGTTTTGATTGAGTATAGAGTGTACTGTTGTCAAAACCTAATGTGTTTTTTAATCATCCCAAATGAGAAAAAACAATGATTTCTGCTTCCAGATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAGGTAAATGTGCTCATAGCCACTTTTAGTATGTAGGATTTTGACTGTTCATTTAATATCTATACTTATGTAAATGGTTAATTTCGTCTAGTTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAGGTTAGTGAGTTCCTTATGTTATGTTCTCAACATCTAATATGCTGCTGCAACAAAGTCCATAAATGCAGCCCAAAATTTTTGTTAGATATATCCCGTATTTATGATAAGGTCTATCTATTTTTCCTGAATAGTCTATCACTTCTTTATTTTGTTTCTGATAGGCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAGGTAATCACTACATAGTAGGGAATTCTACTACTTAAACATCTCCTGCTTTGAATTTTTTTCATGCATTTATGTTAATAGCCATTTGTTTATTTGCTTTCATGAAATAAAGTTATCTTGTACTCTCTCACACACACACCCTTCCCCCCCTCCCTTTGCGCTCTTGAACCATGTCAAGCACTTAGTTTGAATCTATTACTATTTGCAATTGAGGCTAAGTGGCTCTCCAAATTGAAATAGATGACTTCTTATGCCATTTCTCGGTATTGAGCATCTCTTGTACCTGCGAGGATTTTCTAGGTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGACGTAAGCATACTGTCTTCCAAATTTTTTTCTAGTTGTGCTATACCAATTTCATATGGTTTTC</genome_strand>
        <mrna_strand>TATCTTTAAGGCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGAGTCTTAGCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATC....................................................................................................................................ATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCACG..............................................................................................GTCGACTTCGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGTACTATAACAGATAATGCCATTACGGTGTTTACTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATG..............................................................................................................................................................................................ATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAG........................................................................................TTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAG.................................................................................................................................................................GCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAG.........................................................................................................................................................................................................................................................................................................GTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGACGTAAGCATACTGTCTTCCAAATTTTTTTCTAGTTGTGCTATACCAATTTCATATGGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728540" ref_strand="+" ref_description="SGN-E728540 [LA18AF07]">
      <seq>gcggtacaacagggaaaccaaaaggagttgtgcacacacacaatggattcttagcacaggtccaaatgttagctaatgcatgggaatacacgcccaaggatcaatttctgcattgtctaccactccatcatgtgcatggacttttcaatgctttgcttgcccctctttatgcaggttccacggtcgacttcgtgccaaaattcagtgtgaggggaatttggcagagatggcgtgaatcatatcctacagatggtactataacagataatgccattacggtgtttactggagttccaactatgtatgcacgattgatacaaggttatgaagcaatggatccagaactaaaaacagcttctgcttcagcagcaaggcacttgcgccttatgatgagtggctcctctgcacttcctctgcccgtcatgcagcagtgggaaaccattactggacaccggttattggaacgttatggcatgactgagtttgtgatggcaatctctaatcccataaacggcaagcgcaaaggaggtactgttggcaagccatttccaggtgtgcaggccaagattcttttggacgatgcgagtagcaatgaccaaactggagttggggagctctgcattaagagcccatcactgttcaaagaatactggaaattacctgaggtaaccaagcagtcatttactgatgatggatatttcaagactggagatactgttactgttgacgaagaggggtattacatcattctangacgtacaaatgctgatattatgaagtttggtggatacaaattatcagcgttgaaaattgaagcagttctgttggagcatcaagctatattagagtgctgtgttttaagcttgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="5391" stop="9777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5691" g_stop="5749" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5750" i_stop="6279" i_length="530">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6280" g_stop="6349" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="129" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6350" i_stop="6481" i_length="132">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6482" g_stop="6534" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="182" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6535" i_stop="6628" i_length="94">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6629" g_stop="6736" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="290" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6737" i_stop="7331" i_length="595">
            <donor d_prob="0.828" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7332" g_stop="7430" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="389" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7431" i_stop="7620" i_length="190">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7621" g_stop="7713" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="482" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7714" i_stop="7801" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="7802" g_stop="7879" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="560" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="7880" i_stop="8040" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="8041" g_stop="8145" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="665" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="8146" i_stop="8442" i_length="297">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="8443" g_stop="8533" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="756" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="8534" i_stop="9225" i_length="692">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="9226" g_stop="9299" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="830" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="9300" i_stop="9437" i_length="138">
            <donor d_prob="0.689" d_score="0.98"/>
            <acceptor a_prob="0.353" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="9438" g_stop="9477" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="831" r_stop="870" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E728540" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5691" e_stop="5749"/>
          <exon e_start="6280" e_stop="6349"/>
          <exon e_start="6482" e_stop="6534"/>
          <exon e_start="6629" e_stop="6736"/>
          <exon e_start="7332" e_stop="7430"/>
          <exon e_start="7621" e_stop="7713"/>
          <exon e_start="7802" e_stop="7879"/>
          <exon e_start="8041" e_stop="8145"/>
          <exon e_start="8443" e_stop="8533"/>
          <exon e_start="9226" e_stop="9299"/>
          <exon e_start="9438" e_stop="9477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGAGTCTTAGCACAGGTTGATGTCTGTTCTAGACTTGATATCAGCATTCCCCTGCTTTGTTGGATCTTGATATGATTGATTCTTAGCCTTTATGTCTTCTTTTCAAATTCATTGATTTACTAGAAACATTCCACTTCTACTTCGTGATGTTACACTATAAATTAAGGCTCAGAAGATATCATTCATATCACAGACCTTGGTGTGTCCAATTGAGCAAGTTTGCTTCCCCTTTTTTCTTCCTCAATTAGGCTGTGAATGCATATGTATTCCATAATTCTGAAGGTAGGATAACATGCGATAGTATTTGTATTGCTGAGAGATGATAAGTAACCCAAGTCAGCACCTTGGACTAACTTCTGTTGTAATGAAGAAGAGTCGATATCATTTACTAAAGTGACCTTGCTTAGATCTTGTTTCAGTTGTCAGTAATATTGAGAGGGGTGAGGATTGTCTTTATTGAAGTTTCGATATGAAATACTCTTTTCAGTTTACTGGAAGTTTTGTTGATGTCTGTGCTAACCCTCCTTCCATGTTTGCTGTTTCAGGTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATCATATCCACATTCCTTTATTTTTGTTCCCAATCATGTTGTTTACATAATTCCTGCTTTTGCAATGTGTTTTTGTGTGGGATAAACAATCTCATTTGGACTACAAAACTGGCTGATCCTTAACCTGTACTGTACATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCACGGTATAATTTCACATCGTCAAACTTTTTTCACTACAGCATACATGCTGTCGGATTGGAAATTCATGTTACTATATCCGCTTTTCTCTTTTTGAAGGTCGACTTCGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGGACTATAACAGATAATGCCATTACGGTGTTTACTGGAGTAAGTCAGTTTTAAATAGATTAGTGAAACATTTTTGCAATGGTATGTGATGTTAGTTGATCTGTGAATTTATTATGTTGAGCTTTGCATTCTTAAACTTACCATGGAAAAATGATTTCTCGCTTCAGTTACATAATATGTGCATGAAGCTTTGAGTAAGAATACATGTTTCGTGTTTCTGCATCCCTGAAATGGACTCACAGTGGAAGCCTCTAATAATGTCATCACTTTCTTAATTTATCATGAAACTCCATTGCATCCTGTTTGCATCAAAGCTAAGAATAAGAATACATGGTTTCTCGATTCTTTTGCATAATGCTTTCTTTATGGCTGAGACTAATAATACCATGTCATGATCTGTGATTTCTGTATCCTTGGATAGGAGATACTTACAGCAGAAGCTTCTACTTAATGTCAGATATCTAAGATGTCACTACTCTGATTGTATTTGGGGTATCGATACGGATAACTTTAGCTATTGTGTGTACCTAGCTTGGATTTTCCAACGCTATGTGTCAACTAATAAGTTTGGTAGCGGATCCACCGACTCCTACCCTCCACTCTTTTCTGATTGATTTTTTTTCTAATCCAATAGGTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATGGTAATAGACTTGGTTTCTATTTTGCTGGTGTTTTTGATAAACAACATAAAACATAGTTAGGATCTTAACTGTACAGAGCCTGCTTCCTCATTTTGTTTTGTTTTGATTGAGTATAGAGTGTACTGTTGTCAAAACCTAATGTGTTTTTTAATCATCCCAAATGAGAAAAAACAATGATTTCTGCTTCCAGATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAGGTAAATGTGCTCATAGCCACTTTTAGTATGTAGGATTTTGACTGTTCATTTAATATCTATACTTATGTAAATGGTTAATTTCGTCTAGTTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAGGTTAGTGAGTTCCTTATGTTATGTTCTCAACATCTAATATGCTGCTGCAACAAAGTCCATAAATGCAGCCCAAAATTTTTGTTAGATATATCCCGTATTTATGATAAGGTCTATCTATTTTTCCTGAATAGTCTATCACTTCTTTATTTTGTTTCTGATAGGCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAGGTAATCACTACATAGTAGGGAATTCTACTACTTAAACATCTCCTGCTTTGAATTTTTTTCATGCATTTATGTTAATAGCCATTTGTTTATTTGCTTTCATGAAATAAAGTTATCTTGTACTCTCTCACACACACACCCTTCCCCCCCTCCCTTTGCGCTCTTGAACCATGTCAAGCACTTAGTTTGAATCTATTACTATTTGCAATTGAGGCTAAGTGGCTCTCCAAATTGAAATAGATGACTTCTTATGCCATTTCTCGGTATTGAGCATCTCTTGTACCTGCGAGGATTTTCTAGGTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGACGTAAGCATACTGTCTTCCAAATTTTTTTCTAGTTGTGCTATACCAATTTCATATGGTTTTCTTTGAATTGTTAGTTGCTACTTGTGCTATACCAATTTTATGTATGTTATGTCCCTAGTAAACTTGTATGACCTGCATGAGATTTGAATGGCAACTTCTCTGAAAGCAATTAAGCATAATCTTGTCTCCTTTCCCCTTTTGAATTTGTTCGTACATTAAAAATGACAATGTTGTCTACGTGACTGCTTTCTCAAATGATGAGGTCGAATCACTGAAAATGACTATCTGGCTACTTCGGCTTTTCTGATATAGTAATATCTACCAATCATTGAGCAAGTGCAAGTATGATTGCCATGCACCTAAAATTTCTCAATTTGTAGTTCAAACCCTCAAATGATAGTGTGTGTGTAACTTTGTCTTGTGTGTTCAAGAACCCAAATGGTAGATATAGGTCTGTGAAAGATGTTCATCTAACTAGATTATAGTTGATGTTAGTTTTATCAATAAATATATTTTGAAGACAAAATTCTAATTTATAGAAGTGTTACTTATTAAGTTTATTCGACCTTGGTTCTTTGGCCTGTTGTTTTCCATTCATAAAACAATGCGGTGATGAACGTTCTTTTTCCATCAAGCTGTATCGGTTAGAGAAAAAATTGATTTCTTTTAGAATTGATATTTTTTCTTTTCAGGTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGGAAATTGAAGCAGTTCTGTTGGAGGTTGCTGCTTGTCTATCTATCTATATAAACACCCTTGGTTTCTATCAAATTTTGAATGTCCCACTCTGATATAGCTCTCAAATATATGATTTCAACAGTTGACATTAATCCCGTTTTAATCAAATTTCCTGTTCACAGCATCAAGCTATATTAGAGTGCTGTGTTTTAGGCTTGCCTG</genome_strand>
        <mrna_strand>GCGGTACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGATTCTTAGCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATC....................................................................................................................................ATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCACG..............................................................................................GTCGACTTCGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGTACTATAACAGATAATGCCATTACGGTGTTTACTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATG..............................................................................................................................................................................................ATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAG........................................................................................TTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAG.................................................................................................................................................................GCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAG.........................................................................................................................................................................................................................................................................................................GTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTANGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGAAAATTGAAGCAGTTCTGTTGGAG..........................................................................................................................................CATCAAGCTATATTAGAGTGCTGTGTTTTAAGCTTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209842" ref_strand="+" ref_description="SGN-E209842 [cLEC-52-K3]">
      <seq>gaatacacgcccaaggatcaatttctgcattgtctaccactccatcatgtgcatggacttttcaatgctttgcttgcccctctttatgcaggttccacggtcgacttcgtgccaaaattcagtgtgaggggaatttggcagagatggcgtgaatcatatcctacagatgggactataacagataatgccattacggtgtttactggagttccaactatgtatgcacgattgatacaaggttatgaagcaatggatccagaactaaaaacagcttctgcttcagcagcaaggcacttgcgccttatgatgagtggctcctctgcacttcctctgcccgtcatgcagcagtgggaaaccattactggacaccggttattggaacgttatggcatgactgagtttgtgatggcaatctctaatcccataaacggcaagcgcaaaggaggtactgttggcaagccatttccaggtgtgcaggccaagattcttttggacgatgcgagtagcaatgaccaaactggagttggggagctctgcattaagagcccatcactgttcaaagaatactggaaattacctgaggtaaccaagcagtcatttactgatgatggatatttcaagactggagatactgttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="6004" stop="8799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6304" g_stop="6349" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6350" i_stop="6481" i_length="132">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6482" g_stop="6534" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="99" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6535" i_stop="6628" i_length="94">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6629" g_stop="6736" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="207" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6737" i_stop="7331" i_length="595">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7332" g_stop="7430" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="306" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7431" i_stop="7620" i_length="190">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7621" g_stop="7713" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="399" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7714" i_stop="7801" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7802" g_stop="7879" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="477" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7880" i_stop="8040" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8041" g_stop="8145" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="582" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="8146" i_stop="8442" i_length="297">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="8443" g_stop="8499" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="639" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E209842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6304" e_stop="6349"/>
          <exon e_start="6482" e_stop="6534"/>
          <exon e_start="6629" e_stop="6736"/>
          <exon e_start="7332" e_stop="7430"/>
          <exon e_start="7621" e_stop="7713"/>
          <exon e_start="7802" e_stop="7879"/>
          <exon e_start="8041" e_stop="8145"/>
          <exon e_start="8443" e_stop="8499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATCATATCCACATTCCTTTATTTTTGTTCCCAATCATGTTGTTTACATAATTCCTGCTTTTGCAATGTGTTTTTGTGTGGGATAAACAATCTCATTTGGACTACAAAACTGGCTGATCCTTAACCTGTACTGTACATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCACGGTATAATTTCACATCGTCAAACTTTTTTCACTACAGCATACATGCTGTCGGATTGGAAATTCATGTTACTATATCCGCTTTTCTCTTTTTGAAGGTCGACTTCGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGGACTATAACAGATAATGCCATTACGGTGTTTACTGGAGTAAGTCAGTTTTAAATAGATTAGTGAAACATTTTTGCAATGGTATGTGATGTTAGTTGATCTGTGAATTTATTATGTTGAGCTTTGCATTCTTAAACTTACCATGGAAAAATGATTTCTCGCTTCAGTTACATAATATGTGCATGAAGCTTTGAGTAAGAATACATGTTTCGTGTTTCTGCATCCCTGAAATGGACTCACAGTGGAAGCCTCTAATAATGTCATCACTTTCTTAATTTATCATGAAACTCCATTGCATCCTGTTTGCATCAAAGCTAAGAATAAGAATACATGGTTTCTCGATTCTTTTGCATAATGCTTTCTTTATGGCTGAGACTAATAATACCATGTCATGATCTGTGATTTCTGTATCCTTGGATAGGAGATACTTACAGCAGAAGCTTCTACTTAATGTCAGATATCTAAGATGTCACTACTCTGATTGTATTTGGGGTATCGATACGGATAACTTTAGCTATTGTGTGTACCTAGCTTGGATTTTCCAACGCTATGTGTCAACTAATAAGTTTGGTAGCGGATCCACCGACTCCTACCCTCCACTCTTTTCTGATTGATTTTTTTTCTAATCCAATAGGTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATGGTAATAGACTTGGTTTCTATTTTGCTGGTGTTTTTGATAAACAACATAAAACATAGTTAGGATCTTAACTGTACAGAGCCTGCTTCCTCATTTTGTTTTGTTTTGATTGAGTATAGAGTGTACTGTTGTCAAAACCTAATGTGTTTTTTAATCATCCCAAATGAGAAAAAACAATGATTTCTGCTTCCAGATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAGGTAAATGTGCTCATAGCCACTTTTAGTATGTAGGATTTTGACTGTTCATTTAATATCTATACTTATGTAAATGGTTAATTTCGTCTAGTTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAGGTTAGTGAGTTCCTTATGTTATGTTCTCAACATCTAATATGCTGCTGCAACAAAGTCCATAAATGCAGCCCAAAATTTTTGTTAGATATATCCCGTATTTATGATAAGGTCTATCTATTTTTCCTGAATAGTCTATCACTTCTTTATTTTGTTTCTGATAGGCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAGGTAATCACTACATAGTAGGGAATTCTACTACTTAAACATCTCCTGCTTTGAATTTTTTTCATGCATTTATGTTAATAGCCATTTGTTTATTTGCTTTCATGAAATAAAGTTATCTTGTACTCTCTCACACACACACCCTTCCCCCCCTCCCTTTGCGCTCTTGAACCATGTCAAGCACTTAGTTTGAATCTATTACTATTTGCAATTGAGGCTAAGTGGCTCTCCAAATTGAAATAGATGACTTCTTATGCCATTTCTCGGTATTGAGCATCTCTTGTACCTGCGAGGATTTTCTAGGTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACT</genome_strand>
        <mrna_strand>GAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATC....................................................................................................................................ATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCACG..............................................................................................GTCGACTTCGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGGACTATAACAGATAATGCCATTACGGTGTTTACTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATG..............................................................................................................................................................................................ATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAG........................................................................................TTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAG.................................................................................................................................................................GCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAG.........................................................................................................................................................................................................................................................................................................GTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327325" ref_strand="+" ref_description="SGN-E327325 [cTOC-19-F20]">
      <seq>tcatatcctacagatgggactataacagataatgccattacggtgtttactggagttccaactatgtatgcacgattgatacaaggttatgaagcaatggatccagaactaaaaacagcttctgcttcagcagcaaggcacttgcgccttatgatgagtggctcctctgcacttcctctgcccgtcatgcagcagtgggaaaccattactggacaccggttattggaacgttatggcatgactgagtttgtgatggcaatctctaatcccataaacggcaagcgcaaaggaggtactgttggcaagccatttccaggtgtgcaggccaagattcttttggacgatgcgagtagcaatgaccaaactggagttggggagctctgcattaagagcccatcactgttcaaagaatactggaaattacctgaggtaaccaagcagtcatttactgatgatggatatttcaagactggagatactgttactgttgacgaagaggggtattacatcattctaggacgtacaaatgctgatattatgaagtttggtggatacaaattatcagcgttggaaattgaagcagttctgttggagcatcaagctatattagagtgctgtgttttaggcttgcctgacaaagactatggcgaagtggtatgtgcaatagttgtgcctgaggctgaagttaaagaagacgagatgaggagctaaagcctgcactaaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="6383" stop="9872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6683" g_stop="6736" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6737" i_stop="7331" i_length="595">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7332" g_stop="7430" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="153" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7431" i_stop="7620" i_length="190">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7621" g_stop="7713" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="246" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7714" i_stop="7801" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7802" g_stop="7879" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="324" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7880" i_stop="8040" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8041" g_stop="8145" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="429" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8146" i_stop="8442" i_length="297">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8443" g_stop="8533" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="520" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8534" i_stop="9225" i_length="692">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9226" g_stop="9299" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="594" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9300" i_stop="9437" i_length="138">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.353" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9438" g_stop="9572" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="728" r_length="134" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E327325" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6683" e_stop="6736"/>
          <exon e_start="7332" e_stop="7430"/>
          <exon e_start="7621" e_stop="7713"/>
          <exon e_start="7802" e_stop="7879"/>
          <exon e_start="8041" e_stop="8145"/>
          <exon e_start="8443" e_stop="8533"/>
          <exon e_start="9226" e_stop="9299"/>
          <exon e_start="9438" e_stop="9572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATCCTACAGATGGGACTATAACAGATAATGCCATTACGGTGTTTACTGGAGTAAGTCAGTTTTAAATAGATTAGTGAAACATTTTTGCAATGGTATGTGATGTTAGTTGATCTGTGAATTTATTATGTTGAGCTTTGCATTCTTAAACTTACCATGGAAAAATGATTTCTCGCTTCAGTTACATAATATGTGCATGAAGCTTTGAGTAAGAATACATGTTTCGTGTTTCTGCATCCCTGAAATGGACTCACAGTGGAAGCCTCTAATAATGTCATCACTTTCTTAATTTATCATGAAACTCCATTGCATCCTGTTTGCATCAAAGCTAAGAATAAGAATACATGGTTTCTCGATTCTTTTGCATAATGCTTTCTTTATGGCTGAGACTAATAATACCATGTCATGATCTGTGATTTCTGTATCCTTGGATAGGAGATACTTACAGCAGAAGCTTCTACTTAATGTCAGATATCTAAGATGTCACTACTCTGATTGTATTTGGGGTATCGATACGGATAACTTTAGCTATTGTGTGTACCTAGCTTGGATTTTCCAACGCTATGTGTCAACTAATAAGTTTGGTAGCGGATCCACCGACTCCTACCCTCCACTCTTTTCTGATTGATTTTTTTTCTAATCCAATAGGTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATGGTAATAGACTTGGTTTCTATTTTGCTGGTGTTTTTGATAAACAACATAAAACATAGTTAGGATCTTAACTGTACAGAGCCTGCTTCCTCATTTTGTTTTGTTTTGATTGAGTATAGAGTGTACTGTTGTCAAAACCTAATGTGTTTTTTAATCATCCCAAATGAGAAAAAACAATGATTTCTGCTTCCAGATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAGGTAAATGTGCTCATAGCCACTTTTAGTATGTAGGATTTTGACTGTTCATTTAATATCTATACTTATGTAAATGGTTAATTTCGTCTAGTTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAGGTTAGTGAGTTCCTTATGTTATGTTCTCAACATCTAATATGCTGCTGCAACAAAGTCCATAAATGCAGCCCAAAATTTTTGTTAGATATATCCCGTATTTATGATAAGGTCTATCTATTTTTCCTGAATAGTCTATCACTTCTTTATTTTGTTTCTGATAGGCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAGGTAATCACTACATAGTAGGGAATTCTACTACTTAAACATCTCCTGCTTTGAATTTTTTTCATGCATTTATGTTAATAGCCATTTGTTTATTTGCTTTCATGAAATAAAGTTATCTTGTACTCTCTCACACACACACCCTTCCCCCCCTCCCTTTGCGCTCTTGAACCATGTCAAGCACTTAGTTTGAATCTATTACTATTTGCAATTGAGGCTAAGTGGCTCTCCAAATTGAAATAGATGACTTCTTATGCCATTTCTCGGTATTGAGCATCTCTTGTACCTGCGAGGATTTTCTAGGTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGACGTAAGCATACTGTCTTCCAAATTTTTTTCTAGTTGTGCTATACCAATTTCATATGGTTTTCTTTGAATTGTTAGTTGCTACTTGTGCTATACCAATTTTATGTATGTTATGTCCCTAGTAAACTTGTATGACCTGCATGAGATTTGAATGGCAACTTCTCTGAAAGCAATTAAGCATAATCTTGTCTCCTTTCCCCTTTTGAATTTGTTCGTACATTAAAAATGACAATGTTGTCTACGTGACTGCTTTCTCAAATGATGAGGTCGAATCACTGAAAATGACTATCTGGCTACTTCGGCTTTTCTGATATAGTAATATCTACCAATCATTGAGCAAGTGCAAGTATGATTGCCATGCACCTAAAATTTCTCAATTTGTAGTTCAAACCCTCAAATGATAGTGTGTGTGTAACTTTGTCTTGTGTGTTCAAGAACCCAAATGGTAGATATAGGTCTGTGAAAGATGTTCATCTAACTAGATTATAGTTGATGTTAGTTTTATCAATAAATATATTTTGAAGACAAAATTCTAATTTATAGAAGTGTTACTTATTAAGTTTATTCGACCTTGGTTCTTTGGCCTGTTGTTTTCCATTCATAAAACAATGCGGTGATGAACGTTCTTTTTCCATCAAGCTGTATCGGTTAGAGAAAAAATTGATTTCTTTTAGAATTGATATTTTTTCTTTTCAGGTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGGAAATTGAAGCAGTTCTGTTGGAGGTTGCTGCTTGTCTATCTATCTATATAAACACCCTTGGTTTCTATCAAATTTTGAATGTCCCACTCTGATATAGCTCTCAAATATATGATTTCAACAGTTGACATTAATCCCGTTTTAATCAAATTTCCTGTTCACAGCATCAAGCTATATTAGAGTGCTGTGTTTTAGGCTTGCCTGACAAAGACTATGGCGAAGTGGTATGTGCAATAGTTGTGCCTGAGGCTGAAGTTAAAAGAAGACGAGATGAGGAGCTAAAGCCTGCACTAACCTTG</genome_strand>
        <mrna_strand>TCATATCCTACAGATGGGACTATAACAGATAATGCCATTACGGTGTTTACTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATG..............................................................................................................................................................................................ATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAG........................................................................................TTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAG.................................................................................................................................................................GCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAG.........................................................................................................................................................................................................................................................................................................GTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGGAAATTGAAGCAGTTCTGTTGGAG..........................................................................................................................................CATCAAGCTATATTAGAGTGCTGTGTTTTAGGCTTGCCTGACAAAGACTATGGCGAAGTGGTATGTGCAATAGTTGTGCCTGAGGCTGAAGTT-AAAGAAGACGAGATGAGGAGCTAAAGCCTGCACTAACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324498" ref_strand="+" ref_description="SGN-E324498 [cTOC-9-E17]">
      <seq>ttccaactatgtatgcacgattgatacaaggttatgaagcaatggatccagaactaaaaacagcttctgcttcagcagcaaggcacttgcgccttatgatgagtggctcctctgcacttcctctgcccgtcatgcagcagtgggaaaccattactggacaccggttattggaacgttatggcatgactgagtttgtgatggcaatctctaatcccataaacggcaagcgcaaaggaggtactgttggcaagccatttccaggtgtgcaggccaagattcttttggacgatgcgagtagcaatgaccaaactggagttggggagctctgcattaagagcccatcactgttcaaagaatactggaaattacctgaggtaaccaagcagtcatttactgatgatggatatttcaagactggagatactgttactgttgacgaagaagggtattacatcattctaggacgtacaaatgctgatattatgaagtttggtggatacaaattatcagcgttggaaattgaagcagttctgttggagcatcaagctatattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="7033" stop="9599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7333" g_stop="7430" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7431" i_stop="7620" i_length="190">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7621" g_stop="7713" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="191" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7714" i_stop="7801" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7802" g_stop="7879" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="269" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7880" i_stop="8040" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8041" g_stop="8145" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="374" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8146" i_stop="8442" i_length="297">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8443" g_stop="8533" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="465" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8534" i_stop="9225" i_length="692">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9226" g_stop="9299" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="539" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9300" i_stop="9437" i_length="138">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.353" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9438" g_stop="9453" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="555" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E324498" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7333" e_stop="7430"/>
          <exon e_start="7621" e_stop="7713"/>
          <exon e_start="7802" e_stop="7879"/>
          <exon e_start="8041" e_stop="8145"/>
          <exon e_start="8443" e_stop="8533"/>
          <exon e_start="9226" e_stop="9299"/>
          <exon e_start="9438" e_stop="9453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATGGTAATAGACTTGGTTTCTATTTTGCTGGTGTTTTTGATAAACAACATAAAACATAGTTAGGATCTTAACTGTACAGAGCCTGCTTCCTCATTTTGTTTTGTTTTGATTGAGTATAGAGTGTACTGTTGTCAAAACCTAATGTGTTTTTTAATCATCCCAAATGAGAAAAAACAATGATTTCTGCTTCCAGATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAGGTAAATGTGCTCATAGCCACTTTTAGTATGTAGGATTTTGACTGTTCATTTAATATCTATACTTATGTAAATGGTTAATTTCGTCTAGTTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAGGTTAGTGAGTTCCTTATGTTATGTTCTCAACATCTAATATGCTGCTGCAACAAAGTCCATAAATGCAGCCCAAAATTTTTGTTAGATATATCCCGTATTTATGATAAGGTCTATCTATTTTTCCTGAATAGTCTATCACTTCTTTATTTTGTTTCTGATAGGCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAGGTAATCACTACATAGTAGGGAATTCTACTACTTAAACATCTCCTGCTTTGAATTTTTTTCATGCATTTATGTTAATAGCCATTTGTTTATTTGCTTTCATGAAATAAAGTTATCTTGTACTCTCTCACACACACACCCTTCCCCCCCTCCCTTTGCGCTCTTGAACCATGTCAAGCACTTAGTTTGAATCTATTACTATTTGCAATTGAGGCTAAGTGGCTCTCCAAATTGAAATAGATGACTTCTTATGCCATTTCTCGGTATTGAGCATCTCTTGTACCTGCGAGGATTTTCTAGGTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGACGTAAGCATACTGTCTTCCAAATTTTTTTCTAGTTGTGCTATACCAATTTCATATGGTTTTCTTTGAATTGTTAGTTGCTACTTGTGCTATACCAATTTTATGTATGTTATGTCCCTAGTAAACTTGTATGACCTGCATGAGATTTGAATGGCAACTTCTCTGAAAGCAATTAAGCATAATCTTGTCTCCTTTCCCCTTTTGAATTTGTTCGTACATTAAAAATGACAATGTTGTCTACGTGACTGCTTTCTCAAATGATGAGGTCGAATCACTGAAAATGACTATCTGGCTACTTCGGCTTTTCTGATATAGTAATATCTACCAATCATTGAGCAAGTGCAAGTATGATTGCCATGCACCTAAAATTTCTCAATTTGTAGTTCAAACCCTCAAATGATAGTGTGTGTGTAACTTTGTCTTGTGTGTTCAAGAACCCAAATGGTAGATATAGGTCTGTGAAAGATGTTCATCTAACTAGATTATAGTTGATGTTAGTTTTATCAATAAATATATTTTGAAGACAAAATTCTAATTTATAGAAGTGTTACTTATTAAGTTTATTCGACCTTGGTTCTTTGGCCTGTTGTTTTCCATTCATAAAACAATGCGGTGATGAACGTTCTTTTTCCATCAAGCTGTATCGGTTAGAGAAAAAATTGATTTCTTTTAGAATTGATATTTTTTCTTTTCAGGTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGGAAATTGAAGCAGTTCTGTTGGAGGTTGCTGCTTGTCTATCTATCTATATAAACACCCTTGGTTTCTATCAAATTTTGAATGTCCCACTCTGATATAGCTCTCAAATATATGATTTCAACAGTTGACATTAATCCCGTTTTAATCAAATTTCCTGTTCACAGCATCAAGCTATATTAG</genome_strand>
        <mrna_strand>TTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATG..............................................................................................................................................................................................ATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAG........................................................................................TTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAG.................................................................................................................................................................GCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAG.........................................................................................................................................................................................................................................................................................................GTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAAGGGTATTACATCATTCTAGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGGAAATTGAAGCAGTTCTGTTGGAG..........................................................................................................................................CATCAAGCTATATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265514" ref_strand="+" ref_description="SGN-E265514 [cLEI-14-K24]">
      <seq>ggcacttgcgccttatgatgagtggctcctctgcacttcctctgcccggcatgcagcagtgggaaaccattactggacaccggatattggaacgttatggcatgactgagtttgtgatggcaatctctaatcccataaacggcaagcgcacaggaggtactgttggcaagccatttccaggtgtgcaggccaagattcttttggactgatgcgagtagcaatgaccaaactggagttggggagctctgcgttaagagcccatcactgttcaaaggatactggaaattacctgaggtcaccacgcagtcatttactgatgatcgatatttcaagactggggatactgttactgttgacgaagaggggtattacatcattctaggacgtacaaatgctgatattatgaagtttggtggatacaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="7114" stop="9566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7414" g_stop="7430" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7431" i_stop="7620" i_length="190">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7621" g_stop="7713" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="110" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7714" i_stop="7801" i_length="88">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7802" g_stop="7879" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="188" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7880" i_stop="8040" i_length="161">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8041" g_stop="8145" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="294" r_length="106" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8146" i_stop="8442" i_length="297">
            <donor d_prob="0.724" d_score="0.96"/>
            <acceptor a_prob="0.737" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8443" g_stop="8533" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="385" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8534" i_stop="9225" i_length="692">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9226" g_stop="9266" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="426" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E265514" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7414" e_stop="7430"/>
          <exon e_start="7621" e_stop="7713"/>
          <exon e_start="7802" e_stop="7879"/>
          <exon e_start="8041" e_stop="8145"/>
          <exon e_start="8443" e_stop="8533"/>
          <exon e_start="9226" e_stop="9266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACTTGCGCCTTATGGTAATAGACTTGGTTTCTATTTTGCTGGTGTTTTTGATAAACAACATAAAACATAGTTAGGATCTTAACTGTACAGAGCCTGCTTCCTCATTTTGTTTTGTTTTGATTGAGTATAGAGTGTACTGTTGTCAAAACCTAATGTGTTTTTTAATCATCCCAAATGAGAAAAAACAATGATTTCTGCTTCCAGATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAGGTAAATGTGCTCATAGCCACTTTTAGTATGTAGGATTTTGACTGTTCATTTAATATCTATACTTATGTAAATGGTTAATTTCGTCTAGTTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAGGTTAGTGAGTTCCTTATGTTATGTTCTCAACATCTAATATGCTGCTGCAACAAAGTCCATAAATGCAGCCCAAAATTTTTGTTAGATATATCCCGTATTTATGATAAGGTCTATCTATTTTTCCTGAATAGTCTATCACTTCTTTATTTTGTTTCTGATAGGCCAAGATTCTTTTGGAC-GATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAGGTAATCACTACATAGTAGGGAATTCTACTACTTAAACATCTCCTGCTTTGAATTTTTTTCATGCATTTATGTTAATAGCCATTTGTTTATTTGCTTTCATGAAATAAAGTTATCTTGTACTCTCTCACACACACACCCTTCCCCCCCTCCCTTTGCGCTCTTGAACCATGTCAAGCACTTAGTTTGAATCTATTACTATTTGCAATTGAGGCTAAGTGGCTCTCCAAATTGAAATAGATGACTTCTTATGCCATTTCTCGGTATTGAGCATCTCTTGTACCTGCGAGGATTTTCTAGGTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGACGTAAGCATACTGTCTTCCAAATTTTTTTCTAGTTGTGCTATACCAATTTCATATGGTTTTCTTTGAATTGTTAGTTGCTACTTGTGCTATACCAATTTTATGTATGTTATGTCCCTAGTAAACTTGTATGACCTGCATGAGATTTGAATGGCAACTTCTCTGAAAGCAATTAAGCATAATCTTGTCTCCTTTCCCCTTTTGAATTTGTTCGTACATTAAAAATGACAATGTTGTCTACGTGACTGCTTTCTCAAATGATGAGGTCGAATCACTGAAAATGACTATCTGGCTACTTCGGCTTTTCTGATATAGTAATATCTACCAATCATTGAGCAAGTGCAAGTATGATTGCCATGCACCTAAAATTTCTCAATTTGTAGTTCAAACCCTCAAATGATAGTGTGTGTGTAACTTTGTCTTGTGTGTTCAAGAACCCAAATGGTAGATATAGGTCTGTGAAAGATGTTCATCTAACTAGATTATAGTTGATGTTAGTTTTATCAATAAATATATTTTGAAGACAAAATTCTAATTTATAGAAGTGTTACTTATTAAGTTTATTCGACCTTGGTTCTTTGGCCTGTTGTTTTCCATTCATAAAACAATGCGGTGATGAACGTTCTTTTTCCATCAAGCTGTATCGGTTAGAGAAAAAATTGATTTCTTTTAGAATTGATATTTTTTCTTTTCAGGTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTA</genome_strand>
        <mrna_strand>GGCACTTGCGCCTTATG..............................................................................................................................................................................................ATGAGTGGCTCCTCTGCACTTCCTCTGCCCGGCATGCAGCAGTGGGAAACCATTACTGGACACCGGATATTGGAACGTTATGGCATGACTGAG........................................................................................TTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCACAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAG.................................................................................................................................................................GCCAAGATTCTTTTGGACTGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCGTTAAGAGCCCATCACTGTTCAAAGGATACTGGAAATTACCTGAG.........................................................................................................................................................................................................................................................................................................GTCACCACGCAGTCATTTACTGATGATCGATATTTCAAGACTGGGGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280923" ref_strand="-" ref_description="SGN-E280923 [cLEL-6-J14](-)">
      <seq>gcacgagcttcctctgcccgtcatgcagcagtgggaaaccattactgtgcaccggttattggaacgttatggcatgactgagtttgtgatggcaatctctaatcccataaacggcaagcgcaaaggaggtactgttggcaagccatttccaggtgtgcaggccaagattcttttggacgatgcgagtagcaatgaccaaactggagttggggagctctgcattaagagcccatcactgttcaaagaatactggaaattacctgaggtaaccaaacagtcattaactgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="7332" stop="8452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7631" g_stop="7713" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7714" i_stop="7801" i_length="88">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7802" g_stop="7879" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="160" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7880" i_stop="8040" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8041" g_stop="8145" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="265" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8146" i_stop="8442" i_length="297">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8443" g_stop="8452" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="275" r_length="10" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E280923" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280923" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7631" e_stop="7713"/>
          <exon e_start="7802" e_stop="7879"/>
          <exon e_start="8041" e_stop="8145"/>
          <exon e_start="8443" e_stop="8452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAGGTAAATGTGCTCATAGCCACTTTTAGTATGTAGGATTTTGACTGTTCATTTAATATCTATACTTATGTAAATGGTTAATTTCGTCTAGTTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAGGTTAGTGAGTTCCTTATGTTATGTTCTCAACATCTAATATGCTGCTGCAACAAAGTCCATAAATGCAGCCCAAAATTTTTGTTAGATATATCCCGTATTTATGATAAGGTCTATCTATTTTTCCTGAATAGTCTATCACTTCTTTATTTTGTTTCTGATAGGCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAGGTAATCACTACATAGTAGGGAATTCTACTACTTAAACATCTCCTGCTTTGAATTTTTTTCATGCATTTATGTTAATAGCCATTTGTTTATTTGCTTTCATGAAATAAAGTTATCTTGTACTCTCTCACACACACACCCTTCCCCCCCTCCCTTTGCGCTCTTGAACCATGTCAAGCACTTAGTTTGAATCTATTACTATTTGCAATTGAGGCTAAGTGGCTCTCCAAATTGAAATAGATGACTTCTTATGCCATTTCTCGGTATTGAGCATCTCTTGTACCTGCGAGGATTTTCTAGGTAACCAAGC</genome_strand>
        <mrna_strand>GCAC-GAGCTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGTGCACCGGTTATTGGAACGTTATGGCATGACTGAG........................................................................................TTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAG.................................................................................................................................................................GCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAG.........................................................................................................................................................................................................................................................................................................GTAACCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266841" ref_strand="+" ref_description="SGN-E266841 [cLEI-7-B12]">
      <seq>gaaaccattactggacaccggttattggaacgttatggcatgactgagtttgtgatggcaatctctaatcccataaacggcaagcgcaaaggaggtactgttggcaagccatttccaggtgtgcaggccaagattcttttggacgatgcgagtagcaatgaccaaactggagttggggagctctgcattaagagcccatcactgttcaaagaatactggaaattacctgaggtaaccaagcagtcatttactgatgatggatatttcaagactggagatactgttactgctgacgaataggggtattacatcattctaagacgtacaaatgctgatattatgaagtttggcggatacaaattatcagcgttggaaattgaagcacttctgtctggagcatcaagctatattagagtgctgtgttttaggcttgcctgacaaagactatggcgaagtggtatgtgcaatagttgcgcctgaggctgaagttaaaagaagacgagatgaggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="7366" stop="9852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7666" g_stop="7713" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7714" i_stop="7801" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7802" g_stop="7879" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="126" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7880" i_stop="8040" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8041" g_stop="8145" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="231" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8146" i_stop="8442" i_length="297">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8443" g_stop="8533" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="322" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8534" i_stop="9225" i_length="692">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9226" g_stop="9299" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="397" r_length="75" r_score="0.946"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9300" i_stop="9437" i_length="138">
            <donor d_prob="0.689" d_score="0.92"/>
            <acceptor a_prob="0.353" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9438" g_stop="9552" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="512" r_length="115" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E266841" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7666" e_stop="7713"/>
          <exon e_start="7802" e_stop="7879"/>
          <exon e_start="8041" e_stop="8145"/>
          <exon e_start="8443" e_stop="8533"/>
          <exon e_start="9226" e_stop="9299"/>
          <exon e_start="9438" e_stop="9552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAGGTAAATGTGCTCATAGCCACTTTTAGTATGTAGGATTTTGACTGTTCATTTAATATCTATACTTATGTAAATGGTTAATTTCGTCTAGTTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAGGTTAGTGAGTTCCTTATGTTATGTTCTCAACATCTAATATGCTGCTGCAACAAAGTCCATAAATGCAGCCCAAAATTTTTGTTAGATATATCCCGTATTTATGATAAGGTCTATCTATTTTTCCTGAATAGTCTATCACTTCTTTATTTTGTTTCTGATAGGCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAGGTAATCACTACATAGTAGGGAATTCTACTACTTAAACATCTCCTGCTTTGAATTTTTTTCATGCATTTATGTTAATAGCCATTTGTTTATTTGCTTTCATGAAATAAAGTTATCTTGTACTCTCTCACACACACACCCTTCCCCCCCTCCCTTTGCGCTCTTGAACCATGTCAAGCACTTAGTTTGAATCTATTACTATTTGCAATTGAGGCTAAGTGGCTCTCCAAATTGAAATAGATGACTTCTTATGCCATTTCTCGGTATTGAGCATCTCTTGTACCTGCGAGGATTTTCTAGGTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGACGTAAGCATACTGTCTTCCAAATTTTTTTCTAGTTGTGCTATACCAATTTCATATGGTTTTCTTTGAATTGTTAGTTGCTACTTGTGCTATACCAATTTTATGTATGTTATGTCCCTAGTAAACTTGTATGACCTGCATGAGATTTGAATGGCAACTTCTCTGAAAGCAATTAAGCATAATCTTGTCTCCTTTCCCCTTTTGAATTTGTTCGTACATTAAAAATGACAATGTTGTCTACGTGACTGCTTTCTCAAATGATGAGGTCGAATCACTGAAAATGACTATCTGGCTACTTCGGCTTTTCTGATATAGTAATATCTACCAATCATTGAGCAAGTGCAAGTATGATTGCCATGCACCTAAAATTTCTCAATTTGTAGTTCAAACCCTCAAATGATAGTGTGTGTGTAACTTTGTCTTGTGTGTTCAAGAACCCAAATGGTAGATATAGGTCTGTGAAAGATGTTCATCTAACTAGATTATAGTTGATGTTAGTTTTATCAATAAATATATTTTGAAGACAAAATTCTAATTTATAGAAGTGTTACTTATTAAGTTTATTCGACCTTGGTTCTTTGGCCTGTTGTTTTCCATTCATAAAACAATGCGGTGATGAACGTTCTTTTTCCATCAAGCTGTATCGGTTAGAGAAAAAATTGATTTCTTTTAGAATTGATATTTTTTCTTTTCAGGTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGGAAATTGAAGCAGTTCTGT-TGGAGGTTGCTGCTTGTCTATCTATCTATATAAACACCCTTGGTTTCTATCAAATTTTGAATGTCCCACTCTGATATAGCTCTCAAATATATGATTTCAACAGTTGACATTAATCCCGTTTTAATCAAATTTCCTGTTCACAGCATCAAGCTATATTAGAGTGCTGTGTTTTAGGCTTGCCTGACAAAGACTATGGCGAAGTGGTATGTGCAATAGTTGTGCCTGAGGCTGAAGTTAAAAGAAGACGAGATGAGGAGC</genome_strand>
        <mrna_strand>GAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAG........................................................................................TTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAG.................................................................................................................................................................GCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAG.........................................................................................................................................................................................................................................................................................................GTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGCTGACGAATAGGGGTATTACATCATTCTAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAATGCTGATATTATGAAGTTTGGCGGATACAAATTATCAGCGTTGGAAATTGAAGCACTTCTGTCTGGAG..........................................................................................................................................CATCAAGCTATATTAGAGTGCTGTGTTTTAGGCTTGCCTGACAAAGACTATGGCGAAGTGGTATGTGCAATAGTTGCGCCTGAGGCTGAAGTTAAAAGAAGACGAGATGAGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243759" ref_strand="+" ref_description="SGN-E243759 [cLED-35-O24]">
      <seq>taagagcccatcactgttcaaagaatactggaaattacctgaggtaaccaagcagtcatttactgatgatggatatttcaagactggagatactgttactgttgacgaagaggggtattacatcattctaggacgtacaaatgctgatattatgaagtttggtggatacaaattatcagcgttggaaattgaagcagttctgttggagcatcaagctatattagagtgctgtgttttaggcttgcctgacaaagactatggcgaagtggtatgtgcaatagttgtgcctgaggctgaagttaaaagaagacgagatgaggagctaaagcctgcactaaccttgcacgaactttatgattgggcgaaggagaagcttgccccatacaagataccaactgctctgtttctgtgggaatctctgcctcgaaatgcgatgggaaaggtaaacaagaaagagctaaaaaggaagctgactgaagatcccaaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="7803" stop="10468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8103" g_stop="8145" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8146" i_stop="8442" i_length="297">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8443" g_stop="8533" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="134" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8534" i_stop="9225" i_length="692">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9226" g_stop="9299" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="208" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9300" i_stop="9437" i_length="138">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.353" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9438" g_stop="9617" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="388" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9618" i_stop="9901" i_length="284">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.838" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9902" g_stop="9955" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="442" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9956" i_stop="10119" i_length="164">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10120" g_stop="10168" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="491" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E243759" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8103" e_stop="8145"/>
          <exon e_start="8443" e_stop="8533"/>
          <exon e_start="9226" e_stop="9299"/>
          <exon e_start="9438" e_stop="9617"/>
          <exon e_start="9902" e_stop="9955"/>
          <exon e_start="10120" e_stop="10168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAGGTAATCACTACATAGTAGGGAATTCTACTACTTAAACATCTCCTGCTTTGAATTTTTTTCATGCATTTATGTTAATAGCCATTTGTTTATTTGCTTTCATGAAATAAAGTTATCTTGTACTCTCTCACACACACACCCTTCCCCCCCTCCCTTTGCGCTCTTGAACCATGTCAAGCACTTAGTTTGAATCTATTACTATTTGCAATTGAGGCTAAGTGGCTCTCCAAATTGAAATAGATGACTTCTTATGCCATTTCTCGGTATTGAGCATCTCTTGTACCTGCGAGGATTTTCTAGGTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGACGTAAGCATACTGTCTTCCAAATTTTTTTCTAGTTGTGCTATACCAATTTCATATGGTTTTCTTTGAATTGTTAGTTGCTACTTGTGCTATACCAATTTTATGTATGTTATGTCCCTAGTAAACTTGTATGACCTGCATGAGATTTGAATGGCAACTTCTCTGAAAGCAATTAAGCATAATCTTGTCTCCTTTCCCCTTTTGAATTTGTTCGTACATTAAAAATGACAATGTTGTCTACGTGACTGCTTTCTCAAATGATGAGGTCGAATCACTGAAAATGACTATCTGGCTACTTCGGCTTTTCTGATATAGTAATATCTACCAATCATTGAGCAAGTGCAAGTATGATTGCCATGCACCTAAAATTTCTCAATTTGTAGTTCAAACCCTCAAATGATAGTGTGTGTGTAACTTTGTCTTGTGTGTTCAAGAACCCAAATGGTAGATATAGGTCTGTGAAAGATGTTCATCTAACTAGATTATAGTTGATGTTAGTTTTATCAATAAATATATTTTGAAGACAAAATTCTAATTTATAGAAGTGTTACTTATTAAGTTTATTCGACCTTGGTTCTTTGGCCTGTTGTTTTCCATTCATAAAACAATGCGGTGATGAACGTTCTTTTTCCATCAAGCTGTATCGGTTAGAGAAAAAATTGATTTCTTTTAGAATTGATATTTTTTCTTTTCAGGTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGGAAATTGAAGCAGTTCTGTTGGAGGTTGCTGCTTGTCTATCTATCTATATAAACACCCTTGGTTTCTATCAAATTTTGAATGTCCCACTCTGATATAGCTCTCAAATATATGATTTCAACAGTTGACATTAATCCCGTTTTAATCAAATTTCCTGTTCACAGCATCAAGCTATATTAGAGTGCTGTGTTTTAGGCTTGCCTGACAAAGACTATGGCGAAGTGGTATGTGCAATAGTTGTGCCTGAGGCTGAAGTTAAAAGAAGACGAGATGAGGAGCTAAAGCCTGCACTAACCTTGCACGAACTTTCTGATTGGGCGAAGGAGAAGCTTGCCCCATACAAGGTATCACCCATACTTGTAGAGCTAATTCTTACTGTTGAGCTTATAAAGTCATGTTGGTCCTCCATATATTGAGCTTGGAAAACAAATTCCTTGTTCTAGTACAGTACATGACTGTTTGAATGATGAAGAAACATATAAACGTTGAATTACTTGGAGTAGGAAAACGGACTTCATGCTTGTTTGGTTGATTTTGTTGCTATGATTTGCTTTTCTTGCGATATGTTTTGGTATTGAAGTACTAAGGTGCTTAAGCTAATTCTTGCCACTTTATGACTGTAATCCAGATACCAACTCGTCTGTTTCTGTGGGAATCTCTGCCTCGAAATGCGATGGGAAAGGTGAGATATACCTACTTTTTGACTCCATAGTTTTTTTAGCTGTTTTTAGTAGTGAATAGATATTTGCCTCCCTATTTTCTTTCACTTGTGTTCTTTTTTAATATTTGAATTGAAATAATATTGGTTATAAACAGCAGATTTGATGTCCTTTTTCTGTGTACTAGGTAAACAAGAAAGAGCTAAAAAGGAAGCTGACTGAAGATCCCAAATGAG</genome_strand>
        <mrna_strand>TAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAG.........................................................................................................................................................................................................................................................................................................GTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGGAAATTGAAGCAGTTCTGTTGGAG..........................................................................................................................................CATCAAGCTATATTAGAGTGCTGTGTTTTAGGCTTGCCTGACAAAGACTATGGCGAAGTGGTATGTGCAATAGTTGTGCCTGAGGCTGAAGTTAAAAGAAGACGAGATGAGGAGCTAAAGCCTGCACTAACCTTGCACGAACTTTATGATTGGGCGAAGGAGAAGCTTGCCCCATACAAG............................................................................................................................................................................................................................................................................................ATACCAACTGCTCTGTTTCTGTGGGAATCTCTGCCTCGAAATGCGATGGGAAAG....................................................................................................................................................................GTAAACAAGAAAGAGCTAAAAAGGAAGCTGACTGAAGATCCCAAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702462" ref_strand="+" ref_description="SGN-E702462 [FA18DB07]">
      <seq>cttttctccattctcttggcattattcatcacacatcttgcccctatactcctgaacaaaatggtgttgccgaacgcaaacaccgtcacctcattgaaaccgtcgtcactctccttcatgagtctcatctccctgcatgaggcgttggccactgccaactatctcatcaaccacatgcccaaaccctccctctctaacacatctccttatgaatgtctctacacacaccgttcggattacactcaccttcgcccctttggttgtcttgcctatccttggctacgccctcacactcaacacaaacttcaactccggtccacaccatgcatctttctaggctaccatccctccataaaaggatacaaatgttttgaacccatctctcaaaaaacatatgtctctcgtcatattcgttttatcgaggaggactttccctatccccggttaagttctgtcactgccacgtccaacccactcggtattactccaatctttccaccgagctcacatggccttgtaccagcacccattaacccatccatcatacacacaccacccaatcccaacactctcatcccatctggatcacccagcacccacaatttacccatcccaccaattttcaaccctcctcattaacaacctccaccagctgaaacagcaccacctccacccccacccccatcccctttacatcacatgcaaacctattccaaatccggcattttcaagcccaaagcctacaccaccactttacctgctccctctccctctgaacctattacctacaaacaagcatctaccaacccccttttggtgtcaggctaaggatgatgaatacaggtctcttattaatcaacatacttggcaattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="28127" stop="26648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27827" g_stop="26948" g_length="880"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="876" r_length="876" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E702462" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27827" e_stop="26948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTCCAATCTCTTGGCATTGTTCATCACACATCTTGCCCATATACTCCTGAACAAAATGGTGTTGCCGAACGCAAACACCGTCACCTCATTGAAACCGTTGTCACTCTTCTTCATGAGTCTCATCTCCCTGCACCTTTCTGGGTCGAGGCGTTGGCCACTGCCAACTATCTCATCAACCGCATGCCCACACCCTCCCTCTCTAACACATCTCCCTATGAATGTCTATACACACACCGTCCAGATTACACTCATCTTCGACCATTTGGTTGTCTTGCCTATCCTTGGCTACGCCCTCACACTCAACACAAACTTCAACCCCGGTCTACACCATGCATCTTTCTAGGCTACCATCCCACCATAAAAGGATACAAATGTTTTGAACCCATCTCTCAAAAAACATATGTCTCTCGTCATGTTCGTTTTATCGAGGAGGATTTTCCCTATCCCCGGTTAAGCTCTGTCAATGCCATGTCCAACCCACTTGGTCTTATTCCAATCTTTCCACCGAGCTCGCATGGCCTTGTACCGGCATCCATTACCCCATCCATCATACACACACCACCCAATCCCAACCCTCTCATCCCATCCGGATCACCCACCACCCCCAATCCACCCATCCCACCAACTTTCAATCCTCCTCACCAACAATCTCCACCAGCCGAAACA--ACC-CCT---CCTCCACCCCCACCCCCTTTACATCATATGCAAACCCGTTCCAAATTCGGCATTTTCAAGCCCAAAGTCTACACCACCACTTCACTTGCTCCCTCTCCCTCTGAACCTACTACCTACAAACAAGCATCTACCAACCCCC-TTTGGTGTCAGGCTATGGATGATGAATACAGGTCTCTTATTAATCAGCATACTTGGGAATTGGT</genome_strand>
        <mrna_strand>CTTTTCTCCATTCTCTTGGCATTATTCATCACACATCTTGCCCCTATACTCCTGAACAAAATGGTGTTGCCGAACGCAAACACCGTCACCTCATTGAAACCGTCGTCACTCTCCTTCATGAGTCTCATCTCCCTGCA----------T-GAGGCGTTGGCCACTGCCAACTATCTCATCAACCACATGCCCAAACCCTCCCTCTCTAACACATCTCCTTATGAATGTCTCTACACACACCGTTCGGATTACACTCACCTTCGCCCCTTTGGTTGTCTTGCCTATCCTTGGCTACGCCCTCACACTCAACACAAACTTCAACTCCGGTCCACACCATGCATCTTTCTAGGCTACCATCCCTCCATAAAAGGATACAAATGTTTTGAACCCATCTCTCAAAAAACATATGTCTCTCGTCATATTCGTTTTATCGAGGAGGACTTTCCCTATCCCCGGTTAAGTTCTGTCACTGCCACGTCCAACCCACTCGGTATTACTCCAATCTTTCCACCGAGCTCACATGGCCTTGTACCAGCACCCATTAACCCATCCATCATACACACACCACCCAATCCCAACACTCTCATCCCATCTGGATCACCCAGCACCCACAATTTACCCATCCCACCAATTTTCAACCCTCCTCATTAACAACCTCCACCAGCTGAAACAGCACCACCTCCACCCCCACCCCCATCCCCTTTACATCACATGCAAACCTATTCCAAATCCGGCATTTTCAAGCCCAAAGCCTACACCACCACTTTACCTGCTCCCTCTCCCTCTGAACCTATTACCTACAAACAAGCATCTACCAACCCCCTTTTGGTGTCAGGCTAAGGATGATGAATACAGGTCTCTTATTAATCAACATACTTGGCAATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270113" ref_strand="+" ref_description="SGN-E270113 [cLEM-7-N11]">
      <seq>gatcctctgagacaaacactccactaattagtggtagtcatttagctgaagaccttcaagcacaatggatgaatctcacagctgaagtggaattaaatcctggtgagctttcggtggtttatatttgtgagtttccggagatcaaagggaagttctatccagataaggctgctgctctcggagtggaacctgggccaaaatatggtcaattgcaaagagggaattcggtggagtcagatcatcaaaatatcatagttcacccttgcgatgttatggagccttccactcacggtcctattgtgctccttgttgactgtccaacaccatctcatctgcaagagttgtcatctttgcagtctcttactccgttttactcgaatatatcaggacaacctgtcgaactgtgcaaaaaagtaaattgtttgatacaccttagccctgtgtcagtaacaaatacacccgcgtatgagcaatggatggccagatttggtgaagcccatcacataatggcacgacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="40492" stop="39278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40192" g_stop="39939" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39938" i_stop="39843" i_length="96">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39842" g_stop="39578" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="519" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E270113" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40192" e_stop="39939"/>
          <exon e_start="39842" e_stop="39578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCTCTGAGACAAACACTCCACTAATTAGTGGTAGTCATTTAGCTGAAGACCTTCAAGCACAATGGATGAATCTCACAGCTGAAGTGGAATTAAATCCTGGTGAGCTTTCGGTGGTTTATATTTGTGAGTTTCCGGAGATCAAAGGGAAGTTCTATCCAGATAAGGCTGCTGCTCTCGGAGTGGAACCTGGGCCAAAATATGGTCAATTGCAAAGAGGGAATTCGGTGGAGTCAGATCATCAAAATATCATAGTAAGTTAGGAAGATTCTTTCCAAAGTTTATCGTGGACTTCATAGTCTATCTCATTAAGTTCTCGGTGCTTTGCTTGCATTTTTTTCGCTGCACAGGTTCACCCTTGCGATGTTATGGAGCCTTCCACTCACGGTCCTATTGTGCTCCTTGTTGACTGTCCAACACCATCTCATCTGCAAGAGTTGTCATCTTTGCAGTCTCTTACTCCGTTTTACTCGAATATATCAGGACAACCTGTCGAACTGTGCAAAAAAGTAAATTGTTTGATACACCTTAGCCCTGTGTCAGTAACAAATACACCCGCGTATGAGCAATGGATGGCCAGATTTGGTGAAGCCCATCACATAATGGCACGACATG</genome_strand>
        <mrna_strand>GATCCTCTGAGACAAACACTCCACTAATTAGTGGTAGTCATTTAGCTGAAGACCTTCAAGCACAATGGATGAATCTCACAGCTGAAGTGGAATTAAATCCTGGTGAGCTTTCGGTGGTTTATATTTGTGAGTTTCCGGAGATCAAAGGGAAGTTCTATCCAGATAAGGCTGCTGCTCTCGGAGTGGAACCTGGGCCAAAATATGGTCAATTGCAAAGAGGGAATTCGGTGGAGTCAGATCATCAAAATATCATA................................................................................................GTTCACCCTTGCGATGTTATGGAGCCTTCCACTCACGGTCCTATTGTGCTCCTTGTTGACTGTCCAACACCATCTCATCTGCAAGAGTTGTCATCTTTGCAGTCTCTTACTCCGTTTTACTCGAATATATCAGGACAACCTGTCGAACTGTGCAAAAAAGTAAATTGTTTGATACACCTTAGCCCTGTGTCAGTAACAAATACACCCGCGTATGAGCAATGGATGGCCAGATTTGGTGAAGCCCATCACATAATGGCACGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735948" ref_strand="+" ref_description="SGN-E735948 [LC03DB11]">
      <seq>cgtttaaattcaccggtggaaaaaaaaaaaagggaatcgttgtgtaaatttttgagtggaatggggaagaagaggaaaacaagggctgagggtaatcataataatgacaagccgaagaaaaaccctctaccggaagaagacgagctcaaaaaaactggtaataacaagtcatatatacagatcctaggaaatggcatggatactcaagatacatcaccctctgtcctcctcttttcggacaaatggaggtttttatttaacgcgggagaaggattgcaacgcttcttgacagagcataaaattacattgtcacagattgatcacctatttctatcacgtgtctgctcagaaactgttggtggactcccaggttggttatcaatgagcacaatatgaaagttaacttaagtgtctggatcaaactaacccttgagaagactctggcgtattgattgcagttgattaaaaccaccaaagaagttctattgttttacttgcaggtctcctattgactttggctgggatgggaaaagaagggatgtcagtaaatgtatcgggtcctccggatctttatctattggttaaagcaatggaatcattcatcccanattctgccatgggtcaaatagatagtgttctccgtaatggatcagatgaagttgctaccgcttcttcaagtaagtttgatcgtctttttgctcccattactgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44055" stop="39961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43757" g_stop="43578" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43577" i_stop="42760" i_length="818">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42759" g_stop="42670" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="270" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42669" i_stop="41041" i_length="1629">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41040" g_stop="40996" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="315" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40995" i_stop="40896" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40895" g_stop="40667" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="544" r_length="229" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40666" i_stop="40431" i_length="236">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40430" g_stop="40261" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="714" r_length="170" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E735948" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43757" e_stop="43578"/>
          <exon e_start="42759" e_stop="42670"/>
          <exon e_start="41040" e_stop="40996"/>
          <exon e_start="40895" e_stop="40667"/>
          <exon e_start="40430" e_stop="40261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAGAATTCGCCGGTGGAAGAGAGAAAGAGGGAATCGTTGTGTAAATTTTTGAGTGGAATGGGGAAGAAGAGGAAAAGAAGGGCTGAGGGTAATCATAGTAATGACAAGCCGAAGAAAAACCCTCTACCGGAAGAAGACGAGCTCAAAAAAACTGGTAATAACAAGTCATATATACAGGTAAGTTCAAAATGTGGTGATTTCTGTCAATTTAAGCAGGAAACTGAACTGGGTGTTACTCAACATAGAAAGAATAACAATGTAAATGGTATTGTAGTTTTGGAGATAGTTAAATTCAAAGAATAAAGTTTTCTGCTTTGTACTGATAAAAGGAAAATTTCTGAAGAAGTGTTGTTTATTTTGGTAGTTTGACATTTTTAATGTGTATTGTATGTACACTATATATGTGTGAAAAGATTTAGCAATTGATTAGAGCATAAAGTTCTGTCTTTTCTGTTAGTTTTGAATAATAACGTTTTGAATATTTTGCACCTAAGAGTGTGGCCTAGTGTGGCCCAGTGGTCCATTAATTGGTTGAGGTTCAAATCCCAGCATAGACAAAAAAAAAAAAAACGCTATGTGATTCTTCTATATGTCCTAAACTTGGTGGACAGAGTTAGAATTATGTACCTGTTCTGTCATAGACTTGGTGGACAGAGTTATGGACCTGTTGTTGCTGGTGGGAGGTGGCAATTATCGCGTGGAATTAGTGCAACTACGTGAAAGTATGCTCAGACACCACATTCATTAGAAAAACACTTTGAATGTTTCTTGTAGTAACTAAATCATTCAATATATTCACGGAAATTGTAAGAGTATTCATTAACTGTTTCGTTTTTCACAGTAAGGATGTTTGGTGTGGACAAATATCTTGTGTCCTTATAAATATGCATTTAACTTATATGTTCATTAATCATATCAAGTTTGTTATTCTAATTGCTTGCTTTCTCACCCCTCGGAAAAATTTAACTTCTTTTGATTCTTTAAATTTCACACAGATCCTAGGAAATGGCATGGATACTCAAGATACATCACCCTCTGTCCTCCTCTTTTCGGACAAATGGAGGTTTTTATTTAACGCGGGAGAAGTAAGTGTTTTTCAAGTTCCCTTCTGTAAATAACATTAGGGCGGTTGTTTGGTTTGCGAACTAGTTATGCAACAATAAAATGTGCATGGACTATTATATGGTGAACTGTTTTTGATAAATAAGAATGCGTTAATCGTTATGTAAAGTTTGAGATAACCATATCAAGAACTAGTTTAATTGTGCAATTGCTAAAACACATATTCTTATTGCGCATTCTATATTGTATAAAATATTGAATAAATTGACCATATAAGGTCTGTAGGTAATAGTTATTTGGAGTTTTCTGCCAGACGTTTTATGAGTAATGCGGAATTTTATATCGAAAACCATTAGTGTGATGTATTAACTATGTATTGCGTAACTATGATTTATTTTTCTGTACAACAAAATGGGTGATCCCTCAAGTGTGTGTTGCAGGTGGTTCTCATATTGTTCTAGTTGATACTATAAGTGCAGCATAGTTCTATTGTGAATCTATTTAGTTAGTTTGGCAATATCTCGATATCTATTTGATTGTACTTTGATTATAGTATCTATTTTGTTGTAGATACTGCTCCCTTTTGTCAGAATGTTTTTTCATGCCATCTTTAGTATTTTGGTCGTGGCTTCTTCACTTATGTTATTTCTTTTCCCGTAGTGTTTTGTTATGTGTTTTCTTGAGCATAGGGTCTATCGGAAACAACATCTCTACCTCCCAAGGCAGGGGGGTAAGGTTTGCGTACACACTATACTCCCCAGACCCCACTTGTGGGATTATACTGGGTATGTTGTTGTTGTTGACGATGATGATTGAGTATTATGGCCATTTTTTATTGCTTTTGTGAAGCTGGTAGACTAATTTGACCTAAAAAGATACCTAGTTTGCATTTAATTTTATATTGTTTATATAAAGTCTAAATCCAGCTATATTCTGTTAGAATGAGCATAATGCAGTAGAACGGTATAGAGGATCTATACAGCTGAATGCATCTAGATTCCTGTTGAGGCATAGTGGATTAAGTGCCCGTTTGGATTAACTTAATTTTTAGGTGCTTTTGACTTTTAAGTAGTTTTTTAGTTTTGGAGGTGTTTGAAAAGGTTATGAAGTGCTTTTAAGCACCCACTTTTAGGCCAGAAAAGTTCTAAAATAACGCAAAAGTCAAAAGTAAGGTACCATCTACTTATGACTTATAAATTACTTTTTATAAGCCCATCCAAACAAACCCTAATTGTTTGATCCACCTATTCTCGATTCTGTTGAATATATGTTTAGTAGATGAACGAGGAGGCATTTTTCTTGTAACAATAAAAAAATGATTTAGCTATTGTCTATGTCTTTATCATTGTTCTAGTAGGTTTCCTCTTCATAATATCCTTCAACAAATGTTTTCCACTTTTGTCCTTCTTGCTCTTCCTTGGTTCTCGTTGCCTTTGTAAAAAGAGGATTGCTGTAGATAAATTGGAAGAATAAAAAATGTACAGTTGGTTGTCTAGTGCGGTTACGTCTCTTGTGTGGTTTGTAAGCTATTGCATAGGAGCGGAGGTTTTATCCTGTGAACACTCAAAGGGTAGTAGCTGTTGATTTCCCTTGTCACAAAAAAAAGTACACTTGGACTTAGTTCTCAACACCTATTTATGTTTTGCTTGCAGGGATTGCAACGCTTCTTGACAGAGCATAAAATTACATTGTCACAGGTATTCAGATATATTATCTTGCTGTTGTAAACCTAATTATGTGTAAGTTACTTTGTTGCTGTTCTAGGGAAATACACATAAAAGTCTTTTTTTTAACCAGATTGATCACATATTTCTATCACGTGTCTGCTCAGAAACTGTTGGTGGACTCCCAGGTTGGTTATCAATGAGCACAATATGAAAGTTAACTTAACTGTCTGGATCAAACTAACCCTTGAGAAGACTCTGGCGTATTGATTGCAGTTGATTAAAACCACCAAAGAAGTTCTATTGTTTTACTTGCAGGTCTCCTATTGACTTTGGCTGGGATGGGAAAAGAAGGGATGTCAGTGAGTGTCTCATTAACTTATTTTACTTACTACTTATTCATCACAAATTTCATCGCTTTTCTTATTTGTATTTTTACTTTTATTGTTTTATACGTTATTAGCTTGAGATGAATTTAAATGGAGATAAATGGTCAGAGAGAATTCGTATAGTCGATCCCAGCTTGTTTAGGATTGAGGTGTTGTTGCTTACAAATGGAGTTTGAAAATTTGATACAGCTTATACCATTTGCTTGCAGGTAAATGTATCGGGTCCTCCGGATCTTTATCTATTGGTTAAAGCAATGGAATCATTCATCCCAAATTCTGCCATGGGTCAAATAGATAGTGTTCTCTGTAATGGATCAGATGAAGTTGCTAGCGCTTCTTCAAGTAAGTTTGATCGTCTTTTTGCTCCCATTACTGATGG</genome_strand>
        <mrna_strand>CGTTTAAATTCACCGGTGGAAAAAAAAAAAAGGGAATCGTTGTGTAAATTTTTGAGTGGAATGGGGAAGAAGAGGAAAACAAGGGCTGAGGGTAATCATAATAATGACAAGCCGAAGAAAAACCCTCTACCGGAAGAAGACGAGCTCAAAAAAACTGGTAATAACAAGTCATATATACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAGGAAATGGCATGGATACTCAAGATACATCACCCTCTGTCCTCCTCTTTTCGGACAAATGGAGGTTTTTATTTAACGCGGGAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGCAACGCTTCTTGACAGAGCATAAAATTACATTGTCACAG....................................................................................................ATTGATCACCTATTTCTATCACGTGTCTGCTCAGAAACTGTTGGTGGACTCCCAGGTTGGTTATCAATGAGCACAATATGAAAGTTAACTTAAGTGTCTGGATCAAACTAACCCTTGAGAAGACTCTGGCGTATTGATTGCAGTTGATTAAAACCACCAAAGAAGTTCTATTGTTTTACTTGCAGGTCTCCTATTGACTTTGGCTGGGATGGGAAAAGAAGGGATGTCA............................................................................................................................................................................................................................................GTAAATGTATCGGGTCCTCCGGATCTTTATCTATTGGTTAAAGCAATGGAATCATTCATCCCANATTCTGCCATGGGTCAAATAGATAGTGTTCTCCGTAATGGATCAGATGAAGTTGCTACCGCTTCTTCAAGTAAGTTTGATCGTCTTTTTGCTCCCATTACTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339268" ref_strand="+" ref_description="SGN-E339268 [cTOF-4-O4]">
      <seq>ccgaaactaagaattcgccggtggaagagagaaagagggaatcgttgtgtaaatttttgagtggaatggggaagaagaggaaaagaagggctgagggtaatcatagtaatgacaagccgaagaaaaaccctctaccggaagaagacgagctcaaaaaaactggtaataacaagtcatatatacaggtaagttcaaaatgtggtgatttctgtcaatttaagcaggaaactgaactgggtgttactcaacatagaaagaataacaatgtaaatggtattgtagttttggagatagttaaattcaaagaataaagttttctgctttgtactgataaaaggaaaatttctgaagaagtgttgtttattttggtagtttgacatttttaatgtgtattgtatgtacactatatatgtgtgaaaagatttagcaattgattagagcataaagttctgtcttttctgttagttttgaataataacgttttgaatattttgcacctaagagtgtggcctagtgtggcccagtggtccattaattggttgaggttcaaatcccagcatagacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44062" stop="42889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43762" g_stop="43189" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E339268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43762" e_stop="43189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAACTAAGAATTCGCCGGTGGAAGAGAGAAAGAGGGAATCGTTGTGTAAATTTTTGAGTGGAATGGGGAAGAAGAGGAAAAGAAGGGCTGAGGGTAATCATAGTAATGACAAGCCGAAGAAAAACCCTCTACCGGAAGAAGACGAGCTCAAAAAAACTGGTAATAACAAGTCATATATACAGGTAAGTTCAAAATGTGGTGATTTCTGTCAATTTAAGCAGGAAACTGAACTGGGTGTTACTCAACATAGAAAGAATAACAATGTAAATGGTATTGTAGTTTTGGAGATAGTTAAATTCAAAGAATAAAGTTTTCTGCTTTGTACTGATAAAAGGAAAATTTCTGAAGAAGTGTTGTTTATTTTGGTAGTTTGACATTTTTAATGTGTATTGTATGTACACTATATATGTGTGAAAAGATTTAGCAATTGATTAGAGCATAAAGTTCTGTCTTTTCTGTTAGTTTTGAATAATAACGTTTTGAATATTTTGCACCTAAGAGTGTGGCCTAGTGTGGCCCAGTGGTCCATTAATTGGTTGAGGTTCAAATCCCAGCATAGACAAAAAAAAAA</genome_strand>
        <mrna_strand>CCGAAACTAAGAATTCGCCGGTGGAAGAGAGAAAGAGGGAATCGTTGTGTAAATTTTTGAGTGGAATGGGGAAGAAGAGGAAAAGAAGGGCTGAGGGTAATCATAGTAATGACAAGCCGAAGAAAAACCCTCTACCGGAAGAAGACGAGCTCAAAAAAACTGGTAATAACAAGTCATATATACAGGTAAGTTCAAAATGTGGTGATTTCTGTCAATTTAAGCAGGAAACTGAACTGGGTGTTACTCAACATAGAAAGAATAACAATGTAAATGGTATTGTAGTTTTGGAGATAGTTAAATTCAAAGAATAAAGTTTTCTGCTTTGTACTGATAAAAGGAAAATTTCTGAAGAAGTGTTGTTTATTTTGGTAGTTTGACATTTTTAATGTGTATTGTATGTACACTATATATGTGTGAAAAGATTTAGCAATTGATTAGAGCATAAAGTTCTGTCTTTTCTGTTAGTTTTGAATAATAACGTTTTGAATATTTTGCACCTAAGAGTGTGGCCTAGTGTGGCCCAGTGGTCCATTAATTGGTTGAGGTTCAAATCCCAGCATAGACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316268" ref_strand="+" ref_description="SGN-E316268 [cTOA-23-B8]">
      <seq>tcgagcccaacatgaccgacccgtcccacactctttctccaaaacggcgcggcatctcttccctctcgcgaattcaaagtttcaaacagcaaagaagcttcaatgcagacacaggactaatatatagcagcaaaattgaaggttaaattggactcaattcacgctccaagtcgatgaactcttgaatgtaatgatcttcctccctgccgctgctgctgctgcctaatggacgacgttgatcgcttatttgaatgcttcaaatgcggcatttctccccctcaatcagcaataagagaaaggaaaaagggaaagcagactgtgaagcaaagtgatacattggaaaagctatcaacatcttcagatattttttcatcaagatcaaagggaaaggtccaaaatgcaacagatgttgagctctgcctacaaaattttcttgaattgtattgacaagtactatttttcaagcacatcccatgccggtggaaactactaactgaaattcaaagattcttcttgtagaccagttcatcaacaacaaagatacaaagtcttaagaaagcatcacagctctctcccctagtgttttatggttctccacatggagttcctccaaaaagaccagctcgtttgttgcggctgttgaatggaatccgtgtagactttaacgagcaacataaattaagccaagatatatgggccacatttccaagggcagatgaagcgatgaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="48553" stop="51168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48853" g_stop="48993" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48994" i_stop="49102" i_length="109">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49103" g_stop="49241" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="280" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49242" i_stop="50220" i_length="979">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50221" g_stop="50369" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="429" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50370" i_stop="50472" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50473" g_stop="50726" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="683" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50727" i_stop="50819" i_length="93">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50820" g_stop="50868" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="732" r_length="49" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E316268" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48853" e_stop="48993"/>
          <exon e_start="49103" e_stop="49241"/>
          <exon e_start="50221" e_stop="50369"/>
          <exon e_start="50473" e_stop="50726"/>
          <exon e_start="50820" e_stop="50868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGCCCAACATGACCGACCCGTCCCACACTCTTTCTCCAAAACGGCGCGGCATCTCTTCCCTCTCGCGAATTCAAAGTTTCAAACAGCAAAGAAGCTTCAATGCAGACACAGGACTAATATATAGCAGCAAAATTGAAGGTATTTTGTTTTCAATCTATTCGAATCGATATCGAATTCTTAGTTTTTGCTAAAGCTTTGTAATTCAAGCGATTTTAGTTGAGAATGTGCTTTGACTGGTTATGTGAAGGTTAAATTGGACTCAATTCACGCTCCAAGTCGATGAACTCTTGAATGTAATGATCTTCCTCCCTGCCGCTGCTGCTGCTGCCTAATGGACGACGTTGATCGCTTATTTGAATGCTTCAAATGCGGCATTTCTCCCCCTCGTAATCGCTCTTCCCTTTACACTGCAATTATGTAAAACTTTTTTTTTTAATTTCCTCCCTATTTCCATTTGAAGAATAACATTTTGATGCCAAAAGGAAAATATTCGTAGTTGTAAAAAGTTTGTTTTTTTCTCAAAATTTGATCTTTTTTTTGGTTTACTGTGGTATGACTAGCCAAAGGGTTGTTTTGAACTATCTAAGATCTGTGTTTACCATTTTTTCCGAGTAATATCTGTATATTACATGTCAGAAATGCTTACAAGACTTGAATTTTGAGTATGGTCTATTTATAAAAAAATAGGGCTCAATAGCTGGTAAGAAAACTGCAGCAAATTTGGCAAGTATTAGAATATGGAATCCAGCTAGTGCGAAATTGAAGCCAAACAATGTTATACGAACATAAGTAATGGTAAGTTGTAAACAAAATAATAGGAGGCACAAATTCAACCAATGTGACCTACATCAACAAGCGGAGAGGAGCAAATTTATTCTAACAACCTGTACACAAAAGGGAGTACCAAATTAGAGATAGAACTTTAATTAATCCCAAAAATATATTCCAAACGAATACCTCACTGTTATCACTTACAAAGAAGAGTTTCTAAAAATTGGGGGATGATTTAAATGAAGGAAGAAGAACAATATTTATAGGGAAATTACTCTGCAAGTAAAGAAAAAGAATAAGAGAAAATACTTTTGTTCTTTGGCTCCAAGAACAATTGGTTCGCCATCACAAGTATTTTGCGTATGCCCAAATTTGGGTCATATCTTATGGAAAGAATCAAAGCCCAACTTTTTACATATGGTGCTGTATAGTGTGGTTTCTTTGCGATCTTAGGTCATAAACGAAAAAAATAGAAATATTTGAAAGTGCACCACAACTATTCCCTCAGTTGTTGTTTGACCACATTCTAAGTGAACTTTAATTTTGATATTTCTCTATTATGTGGTTGTTAATTGTTTCTTATACAAATTTTAGAATCAGCAATAAGAGAAAGGAAAAAGGGAAAGCAGACTGTGAAGCAAAGTGATACATTGGAAAAGCTATCAACATCTTCAGATATTTTTTCATCAAGATCAAAGGGAAAGGTCCAAAATGCAACAGATGTTGAGCTCTGCCTACAAAATGTACATATTGCTTTCGTTCCTTTATATGTTTCATTTTTTTCAAAATTTCATGGCTTCTTTTTCTTTCCCATTGATAATAAGCTTTACTTTCTTAAACACGTAGTTTCTTGAATTGTATTGACAAGTACTATTTTTCAAGCACATCCCATGCCGGTGGAAACTACTAACTGAAATTCAAAGATTCTTCTTGTAGACCAGTTCATCAACAACAAAGATACAAAGTCTTAAGAAAGCATCACAGCTCTCTCCCCTAGTGTTTTATGGTTCTCCACATGGAGTTCCTCCAAAAAGACCAGCTCGTTTGTTGCGGCTGTTGAATGAAATCCGTGTAGACTTTAACGAGCAACATAAATTAAGGTAATTGAAAAAGATTTTTATCACTTTACTCACTAGTATGGTTATGCAATTTGCTTTTTTTGAAAAAAAGTATTCTTCCTTGTGTTTAAACAGCCAAGATATATGGGCCACATTTCCAAGGCAAGATGAAGCGATGAAGTAT</genome_strand>
        <mrna_strand>TCGAGCCCAACATGACCGACCCGTCCCACACTCTTTCTCCAAAACGGCGCGGCATCTCTTCCCTCTCGCGAATTCAAAGTTTCAAACAGCAAAGAAGCTTCAATGCAGACACAGGACTAATATATAGCAGCAAAATTGAAG.............................................................................................................GTTAAATTGGACTCAATTCACGCTCCAAGTCGATGAACTCTTGAATGTAATGATCTTCCTCCCTGCCGCTGCTGCTGCTGCCTAATGGACGACGTTGATCGCTTATTTGAATGCTTCAAATGCGGCATTTCTCCCCCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCAATAAGAGAAAGGAAAAAGGGAAAGCAGACTGTGAAGCAAAGTGATACATTGGAAAAGCTATCAACATCTTCAGATATTTTTTCATCAAGATCAAAGGGAAAGGTCCAAAATGCAACAGATGTTGAGCTCTGCCTACAAAAT.......................................................................................................TTTCTTGAATTGTATTGACAAGTACTATTTTTCAAGCACATCCCATGCCGGTGGAAACTACTAACTGAAATTCAAAGATTCTTCTTGTAGACCAGTTCATCAACAACAAAGATACAAAGTCTTAAGAAAGCATCACAGCTCTCTCCCCTAGTGTTTTATGGTTCTCCACATGGAGTTCCTCCAAAAAGACCAGCTCGTTTGTTGCGGCTGTTGAATGGAATCCGTGTAGACTTTAACGAGCAACATAAATTAAG.............................................................................................CCAAGATATATGGGCCACATTTCCAAGGGCAGATGAAGCGATGAAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316070" ref_strand="+" ref_description="SGN-E316070 [cTOA-23-B23]">
      <seq>tcgagcccaacatgaccgacccgtcccacactctttctccataacggcgcggcatctcttccctctcgcgaattcaaagtttcaaacagcaaagaagcttcaatgcagacacaggactaatatatagcagcaaaattgaaggttaaattggactcgattcacgctccaagtcgatgaactcttgaatgtaatgatcttcctccctgccgctgctgctgctgcctaatggacgacgatgatcgcttatttgaatgcttcaaatgcggcatttctccccctcgatcagcaataagagaaaggaaaaagggaaagcagactgtgaagcaaagtgatacattggaaaagctatcaacatcttcagatattttttcatcaagatcaaagggaaaggtccaaaatgcaacagatgttgagctctgcctacaaaattttcttgaattgtattgacaagtactatttttcaagcacatcccatgccggtggaaactactaactgaaattcaaagattcttcttgtagaccagttcatcaacaacaaagatacaaagtcttaagagagcatcacagctctctcccctagtgttctatggttcgccacatggagttcctccaaaaagacagctcgtttgctgcggctgatgaatgaaatccgtgtagactttaacgagcaaacataattaagccaagatatatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="48553" stop="51030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48853" g_stop="48993" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48994" i_stop="49102" i_length="109">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49103" g_stop="49241" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="280" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49242" i_stop="50220" i_length="979">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50221" g_stop="50369" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="429" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50370" i_stop="50472" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50473" g_stop="50726" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="682" r_length="253" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50727" i_stop="50819" i_length="93">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50820" g_stop="50834" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="697" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E316070" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48853" e_stop="48993"/>
          <exon e_start="49103" e_stop="49241"/>
          <exon e_start="50221" e_stop="50369"/>
          <exon e_start="50473" e_stop="50726"/>
          <exon e_start="50820" e_stop="50834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGCCCAACATGACCGACCCGTCCCACACTCTTTCTCCAAAACGGCGCGGCATCTCTTCCCTCTCGCGAATTCAAAGTTTCAAACAGCAAAGAAGCTTCAATGCAGACACAGGACTAATATATAGCAGCAAAATTGAAGGTATTTTGTTTTCAATCTATTCGAATCGATATCGAATTCTTAGTTTTTGCTAAAGCTTTGTAATTCAAGCGATTTTAGTTGAGAATGTGCTTTGACTGGTTATGTGAAGGTTAAATTGGACTCAATTCACGCTCCAAGTCGATGAACTCTTGAATGTAATGATCTTCCTCCCTGCCGCTGCTGCTGCTGCCTAATGGACGACGTTGATCGCTTATTTGAATGCTTCAAATGCGGCATTTCTCCCCCTCGTAATCGCTCTTCCCTTTACACTGCAATTATGTAAAACTTTTTTTTTTAATTTCCTCCCTATTTCCATTTGAAGAATAACATTTTGATGCCAAAAGGAAAATATTCGTAGTTGTAAAAAGTTTGTTTTTTTCTCAAAATTTGATCTTTTTTTTGGTTTACTGTGGTATGACTAGCCAAAGGGTTGTTTTGAACTATCTAAGATCTGTGTTTACCATTTTTTCCGAGTAATATCTGTATATTACATGTCAGAAATGCTTACAAGACTTGAATTTTGAGTATGGTCTATTTATAAAAAAATAGGGCTCAATAGCTGGTAAGAAAACTGCAGCAAATTTGGCAAGTATTAGAATATGGAATCCAGCTAGTGCGAAATTGAAGCCAAACAATGTTATACGAACATAAGTAATGGTAAGTTGTAAACAAAATAATAGGAGGCACAAATTCAACCAATGTGACCTACATCAACAAGCGGAGAGGAGCAAATTTATTCTAACAACCTGTACACAAAAGGGAGTACCAAATTAGAGATAGAACTTTAATTAATCCCAAAAATATATTCCAAACGAATACCTCACTGTTATCACTTACAAAGAAGAGTTTCTAAAAATTGGGGGATGATTTAAATGAAGGAAGAAGAACAATATTTATAGGGAAATTACTCTGCAAGTAAAGAAAAAGAATAAGAGAAAATACTTTTGTTCTTTGGCTCCAAGAACAATTGGTTCGCCATCACAAGTATTTTGCGTATGCCCAAATTTGGGTCATATCTTATGGAAAGAATCAAAGCCCAACTTTTTACATATGGTGCTGTATAGTGTGGTTTCTTTGCGATCTTAGGTCATAAACGAAAAAAATAGAAATATTTGAAAGTGCACCACAACTATTCCCTCAGTTGTTGTTTGACCACATTCTAAGTGAACTTTAATTTTGATATTTCTCTATTATGTGGTTGTTAATTGTTTCTTATACAAATTTTAGAATCAGCAATAAGAGAAAGGAAAAAGGGAAAGCAGACTGTGAAGCAAAGTGATACATTGGAAAAGCTATCAACATCTTCAGATATTTTTTCATCAAGATCAAAGGGAAAGGTCCAAAATGCAACAGATGTTGAGCTCTGCCTACAAAATGTACATATTGCTTTCGTTCCTTTATATGTTTCATTTTTTTCAAAATTTCATGGCTTCTTTTTCTTTCCCATTGATAATAAGCTTTACTTTCTTAAACACGTAGTTTCTTGAATTGTATTGACAAGTACTATTTTTCAAGCACATCCCATGCCGGTGGAAACTACTAACTGAAATTCAAAGATTCTTCTTGTAGACCAGTTCATCAACAACAAAGATACAAAGTCTTAAGAAAGCATCACAGCTCTCTCCCCTAGTGTTTTATGGTTCTCCACATGGAGTTCCTCCAAAAAGACCAGCTCGTTTGTTGCGGCTGTTGAATGAAATCCGTGTAGACTTTAACGAGCAACATAAATTAAGGTAATTGAAAAAGATTTTTATCACTTTACTCACTAGTATGGTTATGCAATTTGCTTTTTTTGAAAAAAAGTATTCTTCCTTGTGTTTAAACAGCCAAGATATATGGGC</genome_strand>
        <mrna_strand>TCGAGCCCAACATGACCGACCCGTCCCACACTCTTTCTCCATAACGGCGCGGCATCTCTTCCCTCTCGCGAATTCAAAGTTTCAAACAGCAAAGAAGCTTCAATGCAGACACAGGACTAATATATAGCAGCAAAATTGAAG.............................................................................................................GTTAAATTGGACTCGATTCACGCTCCAAGTCGATGAACTCTTGAATGTAATGATCTTCCTCCCTGCCGCTGCTGCTGCTGCCTAATGGACGACGATGATCGCTTATTTGAATGCTTCAAATGCGGCATTTCTCCCCCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCAATAAGAGAAAGGAAAAAGGGAAAGCAGACTGTGAAGCAAAGTGATACATTGGAAAAGCTATCAACATCTTCAGATATTTTTTCATCAAGATCAAAGGGAAAGGTCCAAAATGCAACAGATGTTGAGCTCTGCCTACAAAAT.......................................................................................................TTTCTTGAATTGTATTGACAAGTACTATTTTTCAAGCACATCCCATGCCGGTGGAAACTACTAACTGAAATTCAAAGATTCTTCTTGTAGACCAGTTCATCAACAACAAAGATACAAAGTCTTAAGAGAGCATCACAGCTCTCTCCCCTAGTGTTCTATGGTTCGCCACATGGAGTTCCTCCAAAAAGA-CAGCTCGTTTGCTGCGGCTGATGAATGAAATCCGTGTAGACTTTAACGAGCAAACATAATTAAG.............................................................................................CCAAGATATATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740009" ref_strand="+" ref_description="SGN-E740009 [LC19CH02]">
      <seq>ctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaacttttgggtgcaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagtaggagctgccgaaggagtggtgatggaaataatcattacatttgctttggtgtacacagtgtacgccacagcagctgacccgaagaagggttcattgggtaccattgcacccatagcgatcggtttcattgttggtgctaatattttagctgcaggcccgttctctggaggttcaatgaacccagcccgttcatttggacccgctgtggttagtggaaactttgctggtatttggatttattggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64069" stop="36945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63769" g_stop="63710" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="311" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62970" g_stop="62695" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="587" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62694" i_stop="62533" i_length="162">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62532" g_stop="62511" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="609" r_length="22" r_score="0.727"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62510" i_stop="62208" i_length="303">
            <donor d_prob="0.850" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62207" g_stop="62169" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="648" r_length="39" r_score="0.538"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E740009" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63769" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
          <exon e_start="62970" e_stop="62695"/>
          <exon e_start="62532" e_stop="62511"/>
          <exon e_start="62207" e_stop="62169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTATAGCAATGTGTTCATGAACCACGAACATGCACCTTTATCGAGCGATTTTTAAGTTCTAAATTGATAATTTGTACGTTGTTTGAATTTATGTTGGGTCTAGAAATTGATTTGCCTTTTTTGTACGTAATAAAGAAAGAAAAAAAGTAATATATTGCTTTTTTTTCTTTCTTTTGTTTTGTTTTATTGTTACTTTTTTTTTTTTTTTTAAGTTTTTGGTTTGCAGCTGTACATTCATGTTTTTGGTGTTCAATTGATTTATGAGTTTGGTGAGAACCGCTGCCCTCCATTCATATCGTTGTGCTTGTTATCTTTTTTAATTTTCTCCAATCACCTTTTTAGGCCTTTTTAGTAGTGTTTTATTCTTCAACTGGTTCAAATTCAATTAAATTTAAATATAAATATTGGACATTGAAAAATTTCATTGTTCCCCTTTAATTATTTTTTAGCTCGAATATCAAAAAGAAAAAAAGGGGAATCATGACCAA</genome_strand>
        <mrna_strand>CTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGG..................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA...............................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540351" ref_strand="+" ref_description="SGN-E540351 [TUS-60-J9](-)">
      <seq>gatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctccttcaccggtctattttactggattgctcaacttttgggtgcaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagtaggagctgccgaaggagtggtgatggaaataatcattacatttgctttggtgtacacagtgtacgccacagcagctgacccgaagaagggttcattgggtaccattgcacccatagcgatcggtttcattgttggtgctaatattttagctgcaggcccgttctctggaggttcaatgaacccagcccgttcatttggacccgctgtggttagtggaaactttgctggtatttggatttattgggttggaccacttgttggcggtgggttagctggtcttatctatagcaatgtgttcatgaaccacgaacatgcacctttatcgagcgatttttaagttctaaattgataatttgtacgttgtttgaatttatgttgggtctagaaattgatttgccttttttgtacgtaataaagaaagaaaaaaagtaatatattgcttttttttctttcttttgttttgttttattgttactttttttttttttgttaagtttttggtttgcagctgtacattcatgtttttggtgttcaattgatttatgagtttggtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="63587" stop="36943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63287" g_stop="63051" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62970" g_stop="62388" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="821" r_length="583" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62387" i_stop="62208" i_length="180">
            <donor d_prob="0.531" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62207" g_stop="62186" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="822" r_stop="842" r_length="21" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E540351" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63287" e_stop="63051"/>
          <exon e_start="62970" e_stop="62388"/>
          <exon e_start="62207" e_stop="62186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCC-TCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTATAGCAATGTGTTCATGAACCACGAACATGCACCTTTATCGAGCGATTTTTAAGTTCTAAATTGATAATTTGTACGTTGTTTGAATTTATGTTGGGTCTAGAAATTGATTTGCCTTTTTTGTACGTAATAAAGAAAGAAAAAAAGTAATATATTGCTTTTTTTTCTTTCTTTTGTTTTGTTTTATTGTTACTTTTTTTTTTTTTTTTAAGTTTTTGGTTTGCAGCTGTACATTCATGTTTTTGGTGTTCAATTGATTTATGAGTTTGGTGAGAACCGCTGCCCTCCATTCATATCGTTGTGCTTGTTATCTTTTTTAATTTTCTCCAATCACCTTTTTAGGCCTTTTTAGTAGTGTTTTATTCTTCAACTGGTTCAAATTCAATTAAATTTAAATATAAATATTGGACATTGAAAAATTTCATTGTTCCCCTTTAATTATTTTTTAGCTCGAATATCAAAAAGAAAAAA</genome_strand>
        <mrna_strand>GATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTATAGCAATGTGTTCATGAACCACGAACATGCACCTTTATCGAGCGATTTTTAAGTTCTAAATTGATAATTTGTACGTTGTTTGAATTTATGTTGGGTCTAGAAATTGATTTGCCTTTTTTGTACGTAATAAAGAAAGAAAAAAAGTAATATATTGCTTTTTTTTCTTTCTTTTGTTTTGTTTTATTGTTACTTTTTTTTTTTTTGTTAAGTTTTTGGTTTGCAGCTGTACATTCATGTTTTTGGTGTTCAATTGATTTATGAGTTTG....................................................................................................................................................................................GT-GAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225802" ref_strand="+" ref_description="SGN-E225802 [cLEL-17-A16](-)">
      <seq>ggttcaatgaacccagcccgttcatttggacccgctgtggttagtggaaactttgctggtatttggatttattgggttggaccacttgttggcggtgggttagctggtcttatctacagcaatgtgttcatgaaccccgaacatgcccctttatcgagcgatttttaagttctaaattgataatttgtacgttgtttgaatttatgttgggtctagaaattgatttgccttttttgtacgtaataaagaaagaaaaaaagtaatatattgcctttttttctttcttttgttttgttttaatgttacctttttttttttttttaagtttttggtttgcagctgtacattcatgtttttggtgttcaattgatttatgagtttggttaaaaaaacaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="63069" stop="36945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62769" g_stop="62378" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62377" i_stop="62208" i_length="170">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62207" g_stop="62187" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="413" r_length="21" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E225802" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62769" e_stop="62378"/>
          <exon e_start="62207" e_stop="62187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTATAGCAATGTGTTCATGAACCACGAACATGCACCTTTATCGAGCGATTTTTAAGTTCTAAATTGATAATTTGTACGTTGTTTGAATTTATGTTGGGTCTAGAAATTGATTTGCCTTTTTTGTACGTAATAAAGAAAGAAAAAAAGTAATATATTGCTTTTTTTTCTTTCTTTTGTTTTGTTTTATTGTTACTTTTTTTTTTTTTTTTAAGTTTTTGGTTTGCAGCTGTACATTCATGTTTTTGGTGTTCAATTGATTTATGAGTTTGGTGAGAACCGCTGCCCTCCATTCATATCGTTGTGCTTGTTATCTTTTTTAATTTTCTCCAATCACCTTTTTAGGCCTTTTTAGTAGTGTTTTATTCTTCAACTGGTTCAAATTCAATTAAATTTAAATATAAATATTGGACATTGAAAAATTTCATTGTTCCCCTTTAATTATTTTTTAGCTCGAATATCAAAAAGAAAAA</genome_strand>
        <mrna_strand>GGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTACAGCAATGTGTTCATGAACCCCGAACATGCCCCTTTATCGAGCGATTTTTAAGTTCTAAATTGATAATTTGTACGTTGTTTGAATTTATGTTGGGTCTAGAAATTGATTTGCCTTTTTTGTACGTAATAAAGAAAGAAAAAAAGTAATATATTGCCTTTTTTTCTTTCTTTTGTTTTGTTTTAATGTTACCTTTTTTTTTTTTTTTAAGTTTTTGGTTTGCAGCTGTACATTCATGTTTTTGGTGTTCAATTGATTTATGAGTTTGGTTAAAAAAA..........................................................................................................................................................................CACCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578403" ref_strand="-" ref_description="SGN-E578403 [LE12DE07]">
      <seq>ttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaacttttgggtgcaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagtaggagctgccgaaggagtggtgatggaaataatcattacatttgctttggtgtacacagtgtacgccacagcagctgacccgaagaagggttcattgggtaccattgcacccatagcgatcggtttcattgttggtgctaatattttagctgcaggcccgttctctggaggttcaatgaacccagcccgttcatttggacccgctgtggttagtggaaactttgctggtatttggatttattgggttggaccacttgttggcggtgggttagctggtcttatctatagcaatgtgttcatgaaccacgaacatgcacctttatcgagcgatttttaagatataaattgataatttgtacgttgtttgaatttatgttgggtctagaaattgatttgcctttttctttcttttgttttgttttattgttacttttttttttttgttaagtttttggtttgcagctgtacattcatgtttttggtgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="63546" stop="36945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63246" g_stop="63051" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62970" g_stop="62535" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="633" r_length="437" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62534" i_stop="62485" i_length="50">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.78"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62484" g_stop="62410" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="711" r_length="78" r_score="0.867"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62409" i_stop="62208" i_length="202">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62207" g_stop="62189" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="730" r_length="19" r_score="0.632"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E578403" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578403" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63246" e_stop="63051"/>
          <exon e_start="62970" e_stop="62535"/>
          <exon e_start="62484" e_stop="62410"/>
          <exon e_start="62207" e_stop="62189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTATAGCAATGTGTTCATGAACCACGAACATGCACCTTTATCGAGCGATTTTTAAGTTCTAAATTGATAATTTGTACGTTGTTTGAATTTATGTTGGGTCTAGAAATTGATTTGCCTTTTT-TGTACGTAATAAAGAAAGAAAAAAAGTAATATATTGCTTTTTTTTCTTTCT----TTTGTTTTGTTTTATTGTTACTTTTTTTTTTTTTTTTAAGTTTTTGGTTTGCAGCTGTACATTCATGTTTTTGGTGTTCAATTGATTTATGAGTTTGGTGAGAACCGCTGCCCTCCATTCATATCGTTGTGCTTGTTATCTTTTTTAATTTTCTCCAATCACCTTTTTAGGCCTTTTTAGTAGTGTTTTATTCTTCAACTGGTTCAAATTCAATTAAATTTAAATATAAATATTGGACATTGAAAAATTTCATTGTTCCCCTTTAATTATTTTTTAGCTCGAATATCAAAAAGAAA</genome_strand>
        <mrna_strand>TTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTATAGCAATGTGTTCATGAACCACGAACATGCACCTTTATCGAGCGATTTTTAAGATATAAATTGATAATTTGTACGTTGTTTGAATTTATGTTGGGTCTAGAAATTGATTTGCCTTTTTCT..................................................TTCTTTTGTTTTGTTTTATTGTTAC-TTTTTTTTTTTTGTTAAGTTTTTGGTTTGCAGCTGTACATTCATGTTTTTGGT..........................................................................................................................................................................................................GTTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285277" ref_strand="+" ref_description="SGN-E285277 [cLER-20-E23]">
      <seq>gaggttcaatgaacccagcccgttcatttggacccgctgtggttagtggaaactttgctggtatttggatttattgggttggaccacttgttggcggtgggttagctggtcttatctatagcaatgtgttcatgaaccacgaacatgcacctttatcgagcgatttttaagttctaaattgataatttgtacgttgtttgaatttatgttaggtctagaaattgatttgccttttttgtacgtaataaagaaagaaaaaaagtaatatattgcttttttttctttcttttgttctgttttattgttactttttttttttttcgttaagttattggtttgcagctgtacattcatgtttttggtgttcaattgatttatgagtttggtgagaaccgctgccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="63071" stop="62070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62771" g_stop="62370" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E285277" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62771" e_stop="62370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTATAGCAATGTGTTCATGAACCACGAACATGCACCTTTATCGAGCGATTTTTAAGTTCTAAATTGATAATTTGTACGTTGTTTGAATTTATGTTGGGTCTAGAAATTGATTTGCCTTTTTTGTACGTAATAAAGAAAGAAAAAAAGTAATATATTGCTTTTTTTTCTTTCTTTTGTTTTGTTTTATTGTTACTTTTTTTTTTTTT-TTTAAGTTTTTGGTTTGCAGCTGTACATTCATGTTTTTGGTGTTCAATTGATTTATGAGTTTGGTGAGAACCGCTGCCCTC</genome_strand>
        <mrna_strand>GAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTATAGCAATGTGTTCATGAACCACGAACATGCACCTTTATCGAGCGATTTTTAAGTTCTAAATTGATAATTTGTACGTTGTTTGAATTTATGTTAGGTCTAGAAATTGATTTGCCTTTTTTGTACGTAATAAAGAAAGAAAAAAAGTAATATATTGCTTTTTTTTCTTTCTTTTGTTCTGTTTTATTGTTACTTTTTTTTTTTTTCGTTAAGTTATTGGTTTGCAGCTGTACATTCATGTTTTTGGTGTTCAATTGATTTATGAGTTTGGTGAGAACCGCTGCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346175" ref_strand="+" ref_description="SGN-E346175 [cTOF-34-O15]">
      <seq>ttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaacttttgggtgcaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagtaggagctgccgaaggagtggtgatggaaataatcattacatttgctttggtgtacacagtgtacgccacagcagctgacccgaagaagggttcattgggtaccattgcacccatagcgatcggtttcattgttggtgctaatattttagctgcaggcccgttctctggaggttcaatgaacccagcccgttcatttggacccgctgtggttagtggaaactttgctggtatttggatttattgggttggaccacttgttggcggtgggttagctggtcttatctacagcaatgtgttcatgaaccacgaacatgcacctttatcgagcgattnttaagttctaaattgataatttgtacgttgtttgaatttatgttgggtctagaaattgatttgcctttttttctttcttttgttttggtttattggtacttttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="63517" stop="62149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63217" g_stop="63051" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62970" g_stop="62535" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="603" r_length="436" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E346175" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63217" e_stop="63051"/>
          <exon e_start="62970" e_stop="62535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTATAGCAATGTGTTCATGAACCACGAACATGCACCTTTATCGAGCGATTTTTAAGTTCTAAATTGATAATTTGTACGTTGTTTGAATTTATGTTGGGTCTAGAAATTGATTTGCCTTTTTT</genome_strand>
        <mrna_strand>TTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTACAGCAATGTGTTCATGAACCACGAACATGCACCTTTATCGAGCGATTNTTAAGTTCTAAATTGATAATTTGTACGTTGTTTGAATTTATGTTGGGTCTAGAAATTGATTTGCCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727723" ref_strand="+" ref_description="SGN-E727723 [LA15CC04]">
      <seq>ccgttaagcaagcattttcttagtgtttattttactataaatttttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctacattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccgggggtcacgtcaaccctgccgtcacattcggattggctctcgggggccaaatcaccctcctcaccggtctattttactggattgctcaacttttgggtgcaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagtaggagctgccgaaggagtggtgatggaaataatcattacatttgctttggtgtacacagtgtacgccacagcagctgacccgaaaaagggttcattgggtaccattgcacccatagcgatcggtttcattgttggtgctaatattttagctgcaggcccgttctctggaggttcaatgaacccagcccgttcatttggacccgctgtggttagtggaaactttgctggtatttggatttattgggttggaccacttgttggcggggggttacctggtcttatctataagcaatgtgttcatgaaccacaaacatgcacctttatcgagcgattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64199" stop="62303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63896" g_stop="63710" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="195" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="446" r_length="251" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62970" g_stop="62603" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="815" r_length="369" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E727723" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63896" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
          <exon e_start="62970" e_stop="62603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTAT-AGCAATGTGTTCATGAACCACGAACATGCACCTTTATCGAGCGATTTTTA</genome_strand>
        <mrna_strand>CAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGGGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGGGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAAAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGGGGGTTACCTGGTCTTATCTATAAGCAATGTGTTCATGAACCACAAACATGCACCTTTATCGAGCGATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345149" ref_strand="+" ref_description="SGN-E345149 [cTOF-22-H6]">
      <seq>agcattttcttagtgtttattttactataatttttttttttttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctatattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaactttttgggtccaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagtaggagctgccgaaggagtggtgatggaaataatcattacatttgctttggtgtacacagtgtacgccacagcagctgacccgaaaagggttcattgggtaccattgcacccatagcgatcggtttcattgttggtgctaatattttagctgcaggcccgttctctggaggttcaatgaacccagcccgttcttttggacccgctgtggttagtggaaactttgctggtatttggatttattgggttggaccacttgttggcggtgggttagctggtcttatctacagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64194" stop="62347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63894" g_stop="63710" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="435" r_length="252" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62970" g_stop="62647" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="758" r_length="323" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E345149" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63894" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
          <exon e_start="62970" e_stop="62647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAAC-TTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTATAGCAAT</genome_strand>
        <mrna_strand>AGCATTTTCTTAGTGTTTATTTTACTAT-AATTTTTTTTTTT-TTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTATATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTTGGGTCCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAA-AAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCTTTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTACAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728185" ref_strand="+" ref_description="SGN-E728185 [LA16DH11]">
      <seq>cattttcttagtgtttattttactataaatttttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctacattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaacttttgggtgcaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccaatccacggtgtggctgctggagtaggagctgccgaaggagtggtgatggaaataatcattacatttgctttggtgtacacagtgtacgccacagcagctgacccgaagaagggttcattgggtaccattgcacccatagcgatcggtttcattgttggtgctaatattttagctgcaggcccgttctctggaggttcaatgaacccagcccgttcatttggacccgctgtggttagtggaaactttgctggtatttggatttattgggttggaccacttgttggcggtgggttagctggtcttatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64192" stop="62354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63892" g_stop="63710" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="434" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62970" g_stop="62654" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="751" r_length="317" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E728185" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63892" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
          <exon e_start="62970" e_stop="62654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTA</genome_strand>
        <mrna_strand>CATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCAATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335537" ref_strand="+" ref_description="SGN-E335537 [cTOE-2-F9]">
      <seq>ttttcttagtgtttattttactactaattttttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctatattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaacttttgggtgcaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagtaggagctgccgaaggagtggtgatggaaataatcattacatttgctttggtgtacacagtgtacgccacagcagctgacccgaagaagggttcattgggtaccattgcacccatagcgatcggtttcattgttggtgctaatattttagctgcaggcccgttctctggaggttcaatgaacccagcccgttcatttggacccgctgtggttagtggaaactttgctggtatttggatttattgggttggaccacttgttggcgggtgggttagcctggtcttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64190" stop="62356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63890" g_stop="63710" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="433" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62970" g_stop="62656" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="750" r_length="317" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E335537" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63890" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
          <exon e_start="62970" e_stop="62656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTAGTGTTTATTTTACTA-TAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGC-GGTGGGTTAG-CTGGTCTTATC</genome_strand>
        <mrna_strand>TTTTCTTAGTGTTTATTTTACTACTAATTTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTATATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGGTGGGTTAGCCTGGTCTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348777" ref_strand="+" ref_description="SGN-E348777 [cTOF-29-E16]">
      <seq>gcaagcaagcattttcttagtgtttattttactataattttttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctatattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaactttttggggtgcaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagtaggagctgccgaaggagtggtgatggaaataatcattacatttgctttggtgtacacagtgtacgccacagcagctgacccatagcgatcggtttcattggtggtgctaatattttagctgcaggcccgttctctggaggttcaatgaacccagcccgttcatttggacccgctgtggttagtggaaactttgctggtatttggattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64201" stop="62399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63901" g_stop="63710" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="445" r_length="253" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62970" g_stop="62860" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="556" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62859" i_stop="62829" i_length="31">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62828" g_stop="62699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="686" r_length="130" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E348777" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63901" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
          <exon e_start="62970" e_stop="62860"/>
          <exon e_start="62828" e_stop="62699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAAC-TTTT-GGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTA</genome_strand>
        <mrna_strand>GCAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAATTTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTATATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTTGGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGAC...............................CCATAGCGATCGGTTTCATTGGTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346655" ref_strand="+" ref_description="SGN-E346655 [cTOF-28-G9]">
      <seq>aagcattttcttagtgtttattttactataattttttttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctatattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaacttttggggtgcaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagtaggagctgccgaaggagtggtgatggaaataatcattacatttgcttttggtgtacacagtgtacgccacagcagctgacccgaaaaagggttcattgggtaccattgcacccatagcgatcggtttcattgttggtgctaatattttagctgcaggcccgttctctggaggttcaatgaacccagcccgttcatttgacccgctgtggttagtggaaactttgctggtatttggattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64195" stop="62399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63895" g_stop="63710" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="440" r_length="252" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62970" g_stop="62699" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="712" r_length="272" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E346655" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63895" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
          <exon e_start="62970" e_stop="62699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTT--TTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTT-GGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGC-TTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTA</genome_strand>
        <mrna_strand>AAGCATTTTCTTAGTGTTTATTTTACTATAATTTTTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTATATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAAAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTT-GACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731250" ref_strand="+" ref_description="SGN-E731250 [LA26CD02]">
      <seq>cgtttattttactataaattttttttgtgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctacattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtaaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaacttttgggtgcaattgttggctgttacctcctcaaagttgtgaccggaggaatggcggttccgatccacggtgtggctgctggagtaggagctgccgaaggagtggtgatggaaataatcattacatttgctttggtgtacacagtgtacgccacagcagctgacccgaagaagggttcattgggtaccattgcacccatagcgatcggtttcattgttggtgctaatattttagctgcaggcccgttctccggaggttcaatgaacccagcccgttcatttggacccgctgtggttagtggaaactttgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64180" stop="62410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63881" g_stop="63710" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="422" r_length="251" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62970" g_stop="62710" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="683" r_length="261" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E731250" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63881" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
          <exon e_start="62970" e_stop="62710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGT</genome_strand>
        <mrna_strand>CGTTTATTTTACTATAAA-TTTTTTTTGTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTAAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTCCTCAAAGTTGTGACCGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCCGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342343" ref_strand="+" ref_description="SGN-E342343 [cTOF-8-N11]">
      <seq>aagcattttcttagtgtttattttactataattttttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctatattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaacttttgggtgcaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagtaggagctgccgaaggagtggtgatggaaataatcattacatttgctttggtgtacacagtgtacgccacagcagctgacccgaagaagggttctttgggtaccattgcaccatagcgatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64195" stop="62517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63895" g_stop="63710" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="437" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62970" g_stop="62817" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="590" r_length="153" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E342343" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63895" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
          <exon e_start="62970" e_stop="62817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCG</genome_strand>
        <mrna_strand>AAGCATTTTCTTAGTGTTTATTTTACTATAATTTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTATATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCTTTGGGTACCATTGCA-CCATAGCGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306319" ref_strand="+" ref_description="SGN-E306319 [cLEX-13-G20]">
      <seq>agcaagcattttcttagtgtttattttactataattttttttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctatattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaacttttgggtgcaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagtaggagctgccgaaggagtggtgatggaaataatcattacatttgctttggtgtacacagtgtacgccacagcagctgacccgaagaagggttcattgggtaccattgcacccatagcgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64198" stop="62518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63898" g_stop="63710" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="442" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62970" g_stop="62818" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="595" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E306319" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63898" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
          <exon e_start="62970" e_stop="62818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTT--TTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATC</genome_strand>
        <mrna_strand>AGCAAGCATTTTCTTAGTGTTTATTTTACTATAATTTTTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTATATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289745" ref_strand="+" ref_description="SGN-E289745 [cLET-4-D20]">
      <seq>aagcaagcattttcttagtgtttattttactataaattttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctacattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctgcggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaacttttgggtgcaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagtaggagctgccgaaggagtggtgatggaaataatcattacatttgctttggtgtacacagtgtacgccacagcagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64199" stop="62561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63899" g_stop="63710" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="440" r_length="251" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62970" g_stop="62861" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="550" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E289745" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63899" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
          <exon e_start="62970" e_stop="62861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGA</genome_strand>
        <mrna_strand>AAGCAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTT-TTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTGCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330718" ref_strand="+" ref_description="SGN-E330718 [cTOD-8-K14]">
      <seq>tttggacgattcgatgattcattcagcttagggtctattaaggcctatattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaacttttgggtgcaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagtaggagctgccgaaggagtggtgatggaaataatcattacatttgctttggtgtacacagtgtacgccacagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64121" stop="62564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63821" g_stop="63710" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="363" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62970" g_stop="62864" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="470" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E330718" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63821" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
          <exon e_start="62970" e_stop="62864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGC</genome_strand>
        <mrna_strand>TTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTATATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331578" ref_strand="+" ref_description="SGN-E331578 [cTOD-9-F10]">
      <seq>gcaagcaagcattttcttagtgtttattttactataattttttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctatattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaacttttgggtgcaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagtangagctgccgaaggagtggtgatggaaataatcattacatttgctttggtgtacacagtgtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64201" stop="62574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63901" g_stop="63710" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="443" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62970" g_stop="62874" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="540" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E331578" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63901" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
          <exon e_start="62970" e_stop="62874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACG</genome_strand>
        <mrna_strand>GCAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAATTTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTATATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTANGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293131" ref_strand="+" ref_description="SGN-E293131 [cLET-12-H23]">
      <seq>ttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctacattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaacttttgggtgcaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagtaggagctgccgaaggagtggtgatggaaataatcattacatttgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64160" stop="62591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63860" g_stop="63710" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="402" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62970" g_stop="62891" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="482" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E293131" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63860" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
          <exon e_start="62970" e_stop="62891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTT</genome_strand>
        <mrna_strand>TTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312091" ref_strand="+" ref_description="SGN-E312091 [cTOA-11-O12]">
      <seq>cttagtgtttattttactataattttttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctatattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaacttttgggtgcaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagtaggagctgccgaaggagtggtgatggaaataatcattacatttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64186" stop="62593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63886" g_stop="63710" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="428" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62970" g_stop="62893" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="506" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E312091" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63886" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
          <exon e_start="62970" e_stop="62893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCT</genome_strand>
        <mrna_strand>CTTAGTGTTTATTTTACTATAATTTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTATATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725706" ref_strand="+" ref_description="SGN-E725706 [LA05BF10]">
      <seq>agcaagcaagcattttcttagtgtttatatttactataaatttttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctacattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcgggggccaaatcaccctcctcaccggactattttactggattgctcaacttttgggtgcaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagtaggagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64202" stop="62630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63902" g_stop="63710" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="445" r_length="251" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62970" g_stop="62930" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="486" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E725706" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63902" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
          <exon e_start="62970" e_stop="62930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGCAAGCATTTTCTTAGTGTTTAT-TTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGC</genome_strand>
        <mrna_strand>AGCAAGCAAGCATTTTCTTAGTGTTTATATTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGGGGCCAAATCACCCTCCTCACCGGACTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268216" ref_strand="+" ref_description="SGN-E268216 [cLEI-15-N12]">
      <seq>tagtgtttattttactataattttttttttttggtataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctatattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgatgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaacttttgggtgcaattgttggctggtaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64184" stop="62639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63884" g_stop="63710" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="426" r_length="251" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62970" g_stop="62939" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="458" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E268216" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63884" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
          <exon e_start="62970" e_stop="62939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGT</genome_strand>
        <mrna_strand>TAGTGTTTATTTTACTATAATTTTTTTTTTTTGGTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTATATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGATGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGGTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317707" ref_strand="+" ref_description="SGN-E317707 [cTOB-8-F11]">
      <seq>attttcttagtgtttattttactataattctttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctatattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaacttttgggtgcaattgctggctagtaccttctcaaagttgtgactggaggaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64191" stop="62750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63891" g_stop="63710" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="433" r_length="251" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E317707" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63891" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG</genome_strand>
        <mrna_strand>ATTTTCTTAGTGTTTATTTTACTATAATTCTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTATATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGCTGGCTAGTACCTTCTCAAAGTTGTGACTGGAGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338684" ref_strand="+" ref_description="SGN-E338684 [cTOE-15-L14]">
      <seq>actataattttttttttgtagctataaatttaaaaaatgcctcccatatcttttggacgaatcgaagatacattcagcttagggtctattgaggcctatattgctgaattcaacactccttcactgttggtctaaaccggactgggacaatctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctaccatctgttgcagtttgccatggattcccactgtccgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctactgaccggtctattttactggattgctcaacttttgggtgcaatcgttggctgttaccttctcaaagttgagactggaggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64171" stop="62751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63871" g_stop="63710" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.821"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="0.70"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="414" r_length="251" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E338684" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63871" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATAAATTTTTTTTT-TTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG</genome_strand>
        <mrna_strand>ACTATAATTTTTTTTTTGTAGCTATAAATTTAAAAAATGCCTCCCATATCTTTTGGACGAATCGAAGATACATTCAGCTTAGGGTCTATTGAGGCCTATATTGCTGAATTCAACACTCCTTCACTGTTGGTCTAAACCGGACTGGGACAATCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTACCATCTGTTGCAGTTTGCCATGGATTCCCACTGTCCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTACTGACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATCGTTGGCTGTTACCTTCTCAAAGTTGAGACTGGAGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281066" ref_strand="+" ref_description="SGN-E281066 [cLER-7-C15]">
      <seq>tagtgtttattttactataatttttttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctatattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaacttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64184" stop="62798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63884" g_stop="63710" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63098" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="380" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E281066" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63884" e_stop="63710"/>
          <exon e_start="63301" e_stop="63098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGTTTATTTTACTATAA-ATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGG</genome_strand>
        <mrna_strand>TAGTGTTTATTTTACTATAATTTTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTATATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298689" ref_strand="+" ref_description="SGN-E298689 [cLET-44-F21]">
      <seq>caagcaagcattttcttagtgtttattttactataaatttttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctacattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgatgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64200" stop="62822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63900" g_stop="63710" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63122" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="371" r_length="180" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E298689" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63900" e_stop="63710"/>
          <exon e_start="63301" e_stop="63122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTAT</genome_strand>
        <mrna_strand>CAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGATGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307861" ref_strand="+" ref_description="SGN-E307861 [cLEY-20-J6]">
      <seq>agcaagcaagcattttcttagtgtttattttactataattttttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctatattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgttacattcggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64202" stop="62860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63902" g_stop="63710" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63160" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="335" r_length="142" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E307861" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63902" e_stop="63710"/>
          <exon e_start="63301" e_stop="63160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATT</genome_strand>
        <mrna_strand>AGCAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAATTTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTATATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTTACATTCGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342184" ref_strand="+" ref_description="SGN-E342184 [cTOF-10-D4]">
      <seq>ttttcttagtgtttattttactataattttttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctatattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcccactgttcgtggctggtgccattgctgctaatatctccggtggtcacgacaaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64190" stop="62877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63890" g_stop="63710" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63177" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="306" r_length="125" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E342184" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63890" e_stop="63710"/>
          <exon e_start="63301" e_stop="63177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCT</genome_strand>
        <mrna_strand>TTTTCTTAGTGTTTATTTTACTATAATTTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTATATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCCCACTGTTCGTGGCTGGTGCCATTGCTGCTAATATCTCCGGTGGTCACGACAACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214793" ref_strand="+" ref_description="SGN-E214793 [cLEC-79-D13]">
      <seq>catttgagagcaagcaagcattttcttagtgtttattttactataattttttttttttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctatattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacagttaataaaactcaatcttcctccttaatttacacacttgtaatattatattatcaccgtattttagtgtatcataaccaggagcggagctagccttgtgttagctgggtttcatcacccttcgctgaaaaataatattttttatacatgattaaaggtatttaggtaattcctggggttaattcctccaattttgaatctccttggtaaaaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64210" stop="63193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63910" g_stop="63493" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E214793" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63910" e_stop="63493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGAGAGCAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAA-----ATTTT-TTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCT</genome_strand>
        <mrna_strand>CATTTGAGAGCAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAATTTTTTTTTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTATATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGTGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGGTATTTAGGTAATTCCTGGGGTTAATTCCTCCAATTTTGAATCTCCTTGGTAAAAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349726" ref_strand="-" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>ttatgttcattagattgagtatataacatctttcaagattcattgtctttatttctcttgtgtcggtacgtgacattccgctccntcatattcattaatcttcttgtgtcggtacgtgatactctgatcccctaaatctacgtgtcggaacgtgacactccgatcccctaaatctacgtgtcggttcgtgacacctgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaatctatgtgttggttcgtgacacctgatcccttaatctacgtgtcggtttgtgacacccgatcccctaattctacgtgtcagttcgtgacacccgatcccctaatctcattctatcaattcatcaagccttctcccttaccaaggcatcatcaatctcattactttagttcatcaagccttctcccttaccaaggcatcatcattaaaaagagattaggtttttacaagatttgggattcaataacttcatcatgcttatataataacaattatatagttacattcatgcaagcatacaattaagcacatagcagggtttacaatattatcaatacatatcattctctattaagagtttactacgaatatcgtaagagaaacaataacctacctccaccgaagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="72193" stop="78715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72493" g_stop="72581" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72582" i_stop="73319" i_length="738">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.093" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73320" g_stop="73343" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="110" r_length="22" r_score="0.542"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73344" i_stop="73761" i_length="418">
            <donor d_prob="0.766" d_score="0.00"/>
            <acceptor a_prob="0.850" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73762" g_stop="73774" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="122" r_length="12" r_score="0.692"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73775" i_stop="77018" i_length="3244">
            <donor d_prob="0.457" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77019" g_stop="77040" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="142" r_length="20" r_score="0.636"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77041" i_stop="77827" i_length="787">
            <donor d_prob="0.769" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.72"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77828" g_stop="78416" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="717" r_length="575" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E349726" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72493" e_stop="72581"/>
          <exon e_start="73320" e_stop="73343"/>
          <exon e_start="73762" e_stop="73774"/>
          <exon e_start="77019" e_stop="77040"/>
          <exon e_start="77828" e_stop="78416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTTCATTAGATTGAGTATATAAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAAAAGATCAGTACCCCAAGGTCTAACCTCGAATGCATCAAACCAACCAATGGGGGACCTACATCTCCTACCATACAATGCTTCAAATGGAGTCATATCGATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCGGTCTGAGGATGGAACGCGGTACTAAGGTCCAACCTAGTACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGATAGTGGAACCCCATGCAATCGAACAATTTCTGAGACATAGATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACCCATCGTCTTTGGAAGACCAACCACGAAGTCCATTGCGATTCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGAACATTTGGCAATAAAATCCACTATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAATACCTTGAACTATGGGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGGGTACGCATACCTTTACCTTGATCCTCAAAACACCTTCCTCATCGATTTGTGCTTCCTTAGCCTCTCCTCGCAATACCTTATCTTGGATTCTGCGCAGTTTCTCATCATCAAACTGTCTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAACAATCTTCCCTTCTCATTTACTTCTAATCTCATCAAGTCGTTATCTAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAGGCTTGCAAGTGAGCTAGACTTCCCATGCTCCCCGCCTTTCTACTTAAAGCATCCGCTACAACATTCGCCTTCCCCGGATGATACAAAATAGTGATATCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTTTGAGTAAAAACATACTGTAGGCTATGATGATCCGTATAGACCTCACACTTAACCCCATATAAATAGTGTCTCCATTGCTTTAATGCAAACACTACCGCGGCCAATTCCAAATCATGAGTTGGATAGTTACGTTCATGCACTTTTAATTGTCTTGAAGCATAAGCAATAACATTCTTCTCTTGCATTAGCACTGCACCTAAACCCGAATAGGATGCATCACAATAGACAATGAAATTCTTACCTTCCACTGGCAAGGTGAGAATTGGCGCAGTAGTCAACAGAGTCTTGAGCTTTTGAAAGCTTTCCTCACACTCATCCGACCATACGAATGGGACATTTTGCTTAGTCAAGTTCGTCAATTGGGAAGCAATAGAAGAGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTATCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTGGAAACCATATGCCCCAAGAAGGACACTGTATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCCTTCTCAAATGCTCTTCATGTTACTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAATAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGTAGTCTTTGGCACATCCGTTGCCCATATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATACGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAATTCTTGAAGTTGTGCCTTTAACTCTCTTAGCTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACGGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATTACAAACCAGAAGATTACCTGTGATGACAACATCTGATGTCTCCGCTTCCGACCGCCCAGGGAAAGCATAACAATGGGCCCTTTTGTTTGTTTGTCCGTTGCCCCTACCATGTTGTAATGTAGTGGATCCAGTTTGCCCATCACCCCGTCCGCTTTGATGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGTCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATGGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTAGACCCCCAACTACAGTCTGTAGTGAAGACTGAATAGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAAATCTCCTCCCTTTCGAAACCTCTTTGATGTCGATGTCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCTCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACTGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTATGTAGTAACTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAACACCCTTGAAGACTGGAGGTTTCAATTTCAAGAAATTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGACATCCATATGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGAAGGTGTTGGTGCAGAAAACACTGGAGGTGTCTGACCTTGATCAGACAACCCCCTAAGATAAGCGAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCGATTCCTCATTTTGCACTTGTTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGTTGCTCTTCCTCGAGCTACAGCCCCAAAGGCTGGCTCAGACACTTCTTGTCTTGCCGATGTTGATGTTGGCGCAGTCGTTGCTCTAGTTCTAACCATCTGCGAAATAGAGTGAAGATGGTCAGATACCAATTTGTATCACCTAGATACCAATTGGACCCAAGTAATAGCACGAAAGAAAGAATGGAATTTTCCTAAAGTCTTATAGCCCCTCAAAGAAAGGTAAAGGCGTCTCCCTACCGTTCCTTAACACTCTACTAGACTCGTTCTTCTGTGATGAGACCAACGAACCTAATGGCTCTGATACCAAGTTTGTCACGACCCAAATCGAGGCCGTGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACTCTAACATTTCAATATAATATCAACAGTAAATAATGCGGAAGACTCAAACTCATTAAATAAAACCAATTCATTAACTTCTAAAATTCAACATCTATTATTCCCCAAAATCTGGAAGTCATCACCACAAGAACATCTATGATCAAAGTACTAAGCTAAGAGTATTCTAAAAAGCTAAAACAAGTAAAATCTAGTCCATGCCGGAACTTCAAGGCATCAAGGCATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGGAGTAATGAAGACTGGCTAGAGTTACTGTTGAGTCAAAGATGACGGCACGTTTGCGGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCATCTCAAAATAGAAATCGATATATACCAAGTAATATCATAAAATCAACTATGACACTCAACATGTAGCAACATCAAGCACTATATCATTAACAATTACCGTTAAGTTCACACATGAGGACTCAAGGCTTAATACCATAGTCATTTGGGAATTAAGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTATTGGTTCGTGACACCCGATCCCCTAAATTTACGTGTCGATTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCTTAAATCTACATGTCGGTTCGTGACACCCGATTCCCTAAATCTACGTGTCGGTTCGTAACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAATCTCCTTCTATCAATTCATCAAGCCTTCTTTCTTACCAAGGCATCATCAATCCCATTATTTTAGTTCATCACGCCTTCTTTTATACCAAGGCCTCATTATTAACAAAGAGATTAGGATTTTGCAAGATTTGGGATTCAATAACTTTATCATGCTTATATAATCATAATTATATAATTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTATAATATTATCAATACATATCATTCGCTATTAAGATTTTACTACGAATATCGTAAGAGAAATCATAACCTACCTCCACCGAAGATTT</genome_strand>
        <mrna_strand>TTATGTTCATTAGATTGAGTATAT-AACATCTTTCAAGATTCATTGTCTTTATTTCTCTTGTGTCGGTACGTGACATTCCGCTCCNTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCATTA-ATCTTC-TTGTGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACG-TGATAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAT--CCCCTAAATCTACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGGAACGTGACACTCCGATCCC-C-TA------AAT-CT-ACGTGTCGGTTCGTGACAC-CTGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCT-AATCTATGTGTTGGTTCGTGACACCTGA-TCCCTTAATCTACGTGTCGGTTTGTGACACCCGATCCCCTAATTCTACGTGTCAGTTCGTGACACCCGATCCCCTAATCTCATTCTATCAATTCATCAAGCCTTCTCCCTTACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCCCTTACCAAGGCATCATCATTAA-AAAGAGATTAGGTTTTTACAAGATTTGGGATTCAATAACTTCATCATGCTTATATAATAACAATTATATAGTTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTACAATATTATCAATACATATCATTCTCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACAATAACCTACCTCCACCGAAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="72338" stop="73115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72638" g_stop="72814" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72638" e_stop="72814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGTCATATCGATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="73819" stop="75131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74119" g_stop="74831" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74119" e_stop="74831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTATCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTGGAAACCATATGCCCCAAGAAGGACACTGTATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCCTTCTCAAATGCTCTTCATGTTACTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAATAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGTAGTCTTTGGCACATCCGTTGCCCATATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATACGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAATTCTTGAAGTTGTGCCTTTAACTCTCTTAGCTCTGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTCACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="73819" stop="75014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74119" g_stop="74714" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74119" e_stop="74714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTATCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTGGAAACCATATGCCCCAAGAAGGACACTGTATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCCTTCTCAAATGCTCTTCATGTTACTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAATAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGTAGTCTTTGGCACATCCGTTGCCCATATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATACGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="73819" stop="74943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74119" g_stop="74644" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74119" e_stop="74644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTATCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTGGAAACCATATGCCCCAAGAAGGACACTGTATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCCTTCTCAAATGCTCTTCATGTTACTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAATAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGTAGTCTTTGGCACATCCGTTGCCCATATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATA</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="73890" stop="75168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74190" g_stop="74869" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74190" e_stop="74869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTATCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTGGAAACCATATGCCCCAAGAAGGACACTGTATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCCTTCTCAAATGCTCTTCATGTTACTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAATAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGTAGTCTTTGGCACATCCGTTGCCCATATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATACGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAATTCTTGAAGTTGTGCCTTTAACTCTCTTAGCTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="73890" stop="74848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74190" g_stop="74548" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74190" e_stop="74548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTATCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTGGAAACCATATGCCCCAAGAAGGACACTGTATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCCTTCTCAAATGCTCTTCATGTTACTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAATAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGTAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="74339" stop="75597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74639" g_stop="75297" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74639" e_stop="75297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATACGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAATTCTTGAAGTTGTGCCTTTAACTCTCTTAGCTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACGGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76435" stop="74427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76135" g_stop="75949" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75948" i_stop="75205" i_length="744">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75204" g_stop="74691" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76135" e_stop="75949"/>
          <exon e_start="75204" e_stop="74691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGAGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGACATCGACATCAAAGAGGTTTCGAAAGGGAGGAGATTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCTATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCTACCTCAGACCGGTCAACACTTCTCTGAGAGACCCATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGACCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCATCAAAGCGGACGGGGTGATGGGCAAACTGGATCCACTACATTACAACATGGTAGGGGCAACGGACAAACAAACAAAAGGGCCCATTGTTATGCTTTCCCTGGGCGGTCGGAAGCGGAGACATCAGATGTTGTCATCACAGGTAATCTTCTGGTTTGTAATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAAGTATATAGGTCTTGTTTGGTGAATTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTGGAAATGGATGATTTTGATGTAATTTTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAAATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCCGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGCTAAGAGAGTTAAAGGCACAACTTCAAGAATTATTGAACAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTGTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="74408" stop="75769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74708" g_stop="75469" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74708" e_stop="75469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAATTCTTGAAGTTGTGCCTTTAACTCTCTTAGCTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACGGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATTACAAACCAGAAGATTACCTGTGATGACAACATCTGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="74408" stop="75668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74708" g_stop="75368" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74708" e_stop="75368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAATTCTTGAAGTTGTGCCTTTAACTCTCTTAGCTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACGGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="74811" stop="75737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75111" g_stop="75441" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75111" e_stop="75441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATTACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="75018" stop="76176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75318" g_stop="75876" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75318" e_stop="75876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATTACAAACCAGAAGATTACCTGTGATGACAACATCTGATGTCTCCGCTTCCGACCGCCCAGGGAAAGCATAACAATGGGCCCTTTTGTTTGTTTGTCCGTTGCCCCTACCATGTTGTAATGTAGTGGATCCAGTTTGCCCATCACCCCGTCCGCTTTGATGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGTCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATGGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTAGACCCCCAACTACAGTCTGTAGTGAAGACTGAATAGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAAATCTCC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="75102" stop="76491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75402" g_stop="76191" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75402" e_stop="76191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATTACAAACCAGAAGATTACCTGTGATGACAACATCTGATGTCTCCGCTTCCGACCGCCCAGGGAAAGCATAACAATGGGCCCTTTTGTTTGTTTGTCCGTTGCCCCTACCATGTTGTAATGTAGTGGATCCAGTTTGCCCATCACCCCGTCCGCTTTGATGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGTCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATGGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTAGACCCCCAACTACAGTCTGTAGTGAAGACTGAATAGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAAATCTCCTCCCTTTCGAAACCTCTTTGATGTCGATGTCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCTCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="75178" stop="76475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75478" g_stop="76175" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75478" e_stop="76175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGACCGCCCAGGGAAAGCATAACAATGGGCCCTTTTGTTTGTTTGTCCGTTGCCCCTACCATGTTGTAATGTAGTGGATCCAGTTTGCCCATCACCCCGTCCGCTTTGATGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGTCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATGGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTAGACCCCCAACTACAGTCTGTAGTGAAGACTGAATAGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAAATCTCCTCCCTTTCGAAACCTCTTTGATGTCGATGTCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCTCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="75740" stop="77058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76039" g_stop="76758" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76039" e_stop="76758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACTGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTATGTAGTAACTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAACACCCTTGAAGACTGGAGGTTTCAATTTCAAGAAATTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGACATCCATATGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGAAGGTGTTGGTGCAGAAAACACTGGAGGTGTCTGACCTTGATCAGACAACCCCCTAAGATAAGCGAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCGATTCCTCATTTTGCACTTGTTCAGTTTCCCCTTCCTCACCCTCTCT-TACTACTTCTTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="75742" stop="77007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76042" g_stop="76705" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76042" e_stop="76705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACTGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTATGTAGTAACTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAACACCCTTGAAGACTGGAGGTTTCAATTTCAAGAAATTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGACATCCATATGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGAAGGTGTTGGTGCAGAAAACACTGGAGGTGTCTGACCTTGATCAGACAACCCCCTAAGATAAGCGAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCGATTCCTCATTTTGCACTTGTTCAGTTTCCCCTTCCTCACCCTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="77062" stop="75909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76762" g_stop="76209" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76762" e_stop="76209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTGCAAAATGAGGAATCGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTCGCTTATCTTAGGGGGTTGTCTGATCAAGGTCAGACACCTCCAGTGTTTTCTGCACCAACACCTTCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCATATGGATGTCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAATTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGTTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGTTACTACATAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCAGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76097" stop="77130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76397" g_stop="76829" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76397" e_stop="76829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAAATTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGACATCCATATGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGAAGGTGTTGGTGCAGAAAACACTGGAGGTGTCTGACCTTGATCAGACAACCCCCTAAGATAAGCGAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCGATTCCTCATTTTGCACTTGTTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGTTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392027" ref_strand="+" ref_description="SGN-E392027 [TUS-24-O2](-)">
      <seq>cagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagactactcttagtttagtcatttgatcgtagatgttcttgtggtgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="77837" stop="76573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77537" g_stop="76880" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E392027" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77537" e_stop="76880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAAACGTGCCGTCATCTTTGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATA-TCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGCCTTGATGCCTTGAAGTTCCGGCATGGACTAGATT-TTACTTG-TTTTAGCTTTTTAGAATACTCTTAGCTTAGTACTTTGATCATAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGT-TTTATTTAATGAGTTTGAGTCTTCCGCATTATTTACTGTTGATATTATATTGAAATGTTAGAGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCACGGCCTCGATTTGGGTCGTGACAAACTTGGTATCAGAGCCATTAGGTTCGTTGGTCTCATCACAGAAGAACGAGTCTAGTAGAGTGTTAAGGAACGGTAGGGAGACGCCTTTACCTTTCTTTGAGGGGCTATAAGACTTTAGGAAAATTCCATTC--T-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTGCGCCAACATCAAC</genome_strand>
        <mrna_strand>CAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGC-TTTTAGACTACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTA-AGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACC-CGGTTTTGGTCGTGACAAACTTGGTATCAGAG-CATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAATTCCATTCTTTCTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="78221" stop="71870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77921" g_stop="77444" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77921" e_stop="77444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCAATACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACTTAATTCCCAAATGACTATGGTATTAAGCCTTGAGTCCTCATGTGTGAACTTAACGGTAATTGTTAATGATATAGTGCTTGATGTTGCTACATGTTGAGTGTCATAGTTGATTTTATGATATTACTTGG--TATATATCGATTTCTATTTTGAGATGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCCGCAAACGTGCCGTCATCTTTGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATA-TCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="77296" stop="78232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77596" g_stop="77908" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77596" e_stop="77908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCATCTCAAAATAGAAATCGATATATACCAAGTAATATCATAAAATCAACTATGACACTCAACATGTAGCAACATCAAGCACTATATCATTAACAATTACCGTTAAGTTCACACATGAGGACTCAAGGCTTAATACCATAGTCATTTGGGAATTAAGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTAC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="78222" stop="77387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77922" g_stop="77685" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77922" e_stop="77685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCAATACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACTTAATTCCCAAATGACTATGGTATTAAGCCTTGAGTCCTCATGTGTGAACTTAACGGTAATTGTTAATGATATAGTGCTTGATGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="78715" stop="77715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78416" g_stop="78013" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78416" e_stop="78013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTCGGTGGAGGTAGGTTATGATTTCTCTTACGATATTCGTAGTAAAATCTTAATAGCGAATGATATGTATTGATAATATTATAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTATGATTATATAAGCATGATAAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTTACGAACCGACACGTAGATTTAGGGAATCGGGTGTCACGAACCGACATG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGATTAAGGG-ATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291674" ref_strand="+" ref_description="SGN-E291674 [cLET-6-K3]">
      <seq>aacccaataactacctaaaaactaatttagtttgtgtgaggtaaattcaaggatggcatctttggcaactcttgctgctgtgcagcccacaagtggcctagctggaagctccattgctggaactaagctacatgttaaatcatctcgccttaatgtcaagtctactaaatccaggtctgcttctgtggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80218" stop="82422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80518" g_stop="80691" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81615" g_stop="81741" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="301" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82001" g_stop="82122" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="423" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E291674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80518" e_stop="80691"/>
          <exon e_start="81615" e_stop="81741"/>
          <exon e_start="82001" e_stop="82122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAGGTATATGTCGAAGGCTAGTCAGTTGAACATCCTTTTTCAAAAATGTATGTTGTGTATACAAGTTAAATATTACCTTTTATACATATATATATATATTAAATGTTAAATTACTAACTTAGCTACTGCTCATAATGTATAGAAGTTAATTAAACTCATATACTAAGGATGTATCAGGTTGCTAATCTCACTTATTGTATCACTATTCTCTCACCAAAAAATATTCGGTGGCTATTCTCATTGATATATTGATACTCGCTGTTATTTATCTTTTAGATGCTCAGATGGTGTAAATATTTATGTTAAACTGATGATATATAGGAGAATTTACTCTTAACTTGGCGTCAACCGACAATTATGACATTTAACTTTGAATGTGCATAAGTAAATATTTAAATTTATATATTGAACAAATAGACACATTCGTCGTGACTCGTGCATGTCACCCTACATGGAAAATTTGTATTCTACATGGCGTCCTATAGTGTATTATGTCATGTAGGATATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTTCCTACTTGTGCACACTCAAAGTTGGAGGGCGTAGTTGTTTGTTAAAACCAAGTTAAGGGTAATTGTTCATGTATTATGTGATTTATATAGGAGTGTATTTAACTTATTGTGGAAAGTCACTTGCCTTATTTCTTACATTTGATAATATCACTTATGATGAAGATTCACTTATAATTATCTTGATCTGATTAGTGTAAAAAAAGAATTTATACTGTTAATATATAGAATTTAAACTCGATCTTAACATTCTGGTACGGAAGCATAGTTCGTGCAACAGTATAGTAGCAATCAGTTGTATTCAATAAAAGAAAGGCACTCTGTAGAAGTAAGCGTGTCTTTTTATTTGATCGTTGTAATCTGATTGATTATACATATTTGCTAGGTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACT</genome_strand>
        <mrna_strand>AACCCAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347940" ref_strand="+" ref_description="SGN-E347940 [cTOF-31-H7]">
      <seq>acccataactacctaaaaactaatttagtttgtgtgaggtaaattcaaggatggcatctttggcaactcttgctgctgtgcagcccacaagtggcctagctggaagctccattgctggaactaagctacatgttaaatcatctcgccttaatgtcaagtctactaaatccaggtctgcttctgtggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatggcattcggtttatcctgttgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80219" stop="82623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80519" g_stop="80691" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81615" g_stop="81741" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="299" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82001" g_stop="82323" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="622" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E347940" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80519" e_stop="80691"/>
          <exon e_start="81615" e_stop="81741"/>
          <exon e_start="82001" e_stop="82323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAGGTATATGTCGAAGGCTAGTCAGTTGAACATCCTTTTTCAAAAATGTATGTTGTGTATACAAGTTAAATATTACCTTTTATACATATATATATATATTAAATGTTAAATTACTAACTTAGCTACTGCTCATAATGTATAGAAGTTAATTAAACTCATATACTAAGGATGTATCAGGTTGCTAATCTCACTTATTGTATCACTATTCTCTCACCAAAAAATATTCGGTGGCTATTCTCATTGATATATTGATACTCGCTGTTATTTATCTTTTAGATGCTCAGATGGTGTAAATATTTATGTTAAACTGATGATATATAGGAGAATTTACTCTTAACTTGGCGTCAACCGACAATTATGACATTTAACTTTGAATGTGCATAAGTAAATATTTAAATTTATATATTGAACAAATAGACACATTCGTCGTGACTCGTGCATGTCACCCTACATGGAAAATTTGTATTCTACATGGCGTCCTATAGTGTATTATGTCATGTAGGATATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTTCCTACTTGTGCACACTCAAAGTTGGAGGGCGTAGTTGTTTGTTAAAACCAAGTTAAGGGTAATTGTTCATGTATTATGTGATTTATATAGGAGTGTATTTAACTTATTGTGGAAAGTCACTTGCCTTATTTCTTACATTTGATAATATCACTTATGATGAAGATTCACTTATAATTATCTTGATCTGATTAGTGTAAAAAAAGAATTTATACTGTTAATATATAGAATTTAAACTCGATCTTAACATTCTGGTACGGAAGCATAGTTCGTGCAACAGTATAGTAGCAATCAGTTGTATTCAATAAAAGAAAGGCACTCTGTAGAAGTAAGCGTGTCTTTTTATTTGATCGTTGTAATCTGATTGATTATACATATTTGCTAGGTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAA</genome_strand>
        <mrna_strand>ACCCA-TAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739474" ref_strand="+" ref_description="SGN-E739474 [LC17CD12]">
      <seq>ccaataactacctaaaaactaatttagtttgtgtgaggtaaattcaaggatggcatctttggcaactcttgctgctgtgcagcccacaagtggcctagctggaagctccattgctggaactaagctacatgttaaatcatctcgccttaatgtcaagtctactaaatccaggtctgcttctgtggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatggcattcggtttatcctgttgcaaagtttgagcttgttttctaacatggtgtcgatcttatgacattcaatttaaaananaaaaaaaaaaaaaaaaaaaaaanccccccgggggggggccgggacccaatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80221" stop="145115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80521" g_stop="80691" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81615" g_stop="81741" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="298" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82001" g_stop="82382" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="680" r_length="382" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82383" i_stop="82669" i_length="287">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.808" a_score="0.42"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82670" g_stop="82720" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="731" r_length="51" r_score="0.412"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E739474" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80521" e_stop="80691"/>
          <exon e_start="81615" e_stop="81741"/>
          <exon e_start="82001" e_stop="82382"/>
          <exon e_start="82670" e_stop="82720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAGGTATATGTCGAAGGCTAGTCAGTTGAACATCCTTTTTCAAAAATGTATGTTGTGTATACAAGTTAAATATTACCTTTTATACATATATATATATATTAAATGTTAAATTACTAACTTAGCTACTGCTCATAATGTATAGAAGTTAATTAAACTCATATACTAAGGATGTATCAGGTTGCTAATCTCACTTATTGTATCACTATTCTCTCACCAAAAAATATTCGGTGGCTATTCTCATTGATATATTGATACTCGCTGTTATTTATCTTTTAGATGCTCAGATGGTGTAAATATTTATGTTAAACTGATGATATATAGGAGAATTTACTCTTAACTTGGCGTCAACCGACAATTATGACATTTAACTTTGAATGTGCATAAGTAAATATTTAAATTTATATATTGAACAAATAGACACATTCGTCGTGACTCGTGCATGTCACCCTACATGGAAAATTTGTATTCTACATGGCGTCCTATAGTGTATTATGTCATGTAGGATATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTTCCTACTTGTGCACACTCAAAGTTGGAGGGCGTAGTTGTTTGTTAAAACCAAGTTAAGGGTAATTGTTCATGTATTATGTGATTTATATAGGAGTGTATTTAACTTATTGTGGAAAGTCACTTGCCTTATTTCTTACATTTGATAATATCACTTATGATGAAGATTCACTTATAATTATCTTGATCTGATTAGTGTAAAAAAAGAATTTATACTGTTAATATATAGAATTTAAACTCGATCTTAACATTCTGGTACGGAAGCATAGTTCGTGCAACAGTATAGTAGCAATCAGTTGTATTCAATAAAAGAAAGGCACTCTGTAGAAGTAAGCGTGTCTTTTTATTTGATCGTTGTAATCTGATTGATTATACATATTTGCTAGGTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAATTTATCTTGCTGAAATTCTACTTCTGTCGGTTCACGTAGGTGTCAATGCCTGTTAAATGTTTTTAACTAATCTTTGTTTAGGAAGTTACTGACTTCATATTTGCTCACTGTTTAATTGAAAGGAAAAATTACTTATAAATTGCAAGGGAATTGCCTTTAAATCGAAATGATTATACCATACCGACGTGTAAACTTCAAGTTGCAGATTACAAAACTCTCTTAGAAGAGGCAATACAAGGTAAGAATGGACAATAATAAAGTCCATTATTTCCATGGTTATTTGTCATGATATCTTCTTCAGAGTAAATCATTTCAAAAAGCGTGACACCAGCAGTCCTATACTAACTATATA</genome_strand>
        <mrna_strand>CCAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAATTTAAAANANAAAA...............................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAANCCCCCCGGGGGGGGGCCGGGACCCAATTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735791" ref_strand="+" ref_description="SGN-E735791 [LC03AB09]">
      <seq>ccaataactacctaaaaactaatttagtttgtgtgaggtaaattcaaggatggcatctttggcaactcttgctgctgtgcagcccacaagtggcctagctggaagctccattgctggaactaagctacatgttaaatcatctcgccttaatgtcaagtctactaaatccaggtctgcttctgtggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatggcattcggtttatcctgttgcaaagtttgagcttgttttctaacatggtgtccatcttatgacattcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80221" stop="82670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80521" g_stop="80691" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81615" g_stop="81741" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="298" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82001" g_stop="82370" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="668" r_length="370" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E735791" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80521" e_stop="80691"/>
          <exon e_start="81615" e_stop="81741"/>
          <exon e_start="82001" e_stop="82370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAGGTATATGTCGAAGGCTAGTCAGTTGAACATCCTTTTTCAAAAATGTATGTTGTGTATACAAGTTAAATATTACCTTTTATACATATATATATATATTAAATGTTAAATTACTAACTTAGCTACTGCTCATAATGTATAGAAGTTAATTAAACTCATATACTAAGGATGTATCAGGTTGCTAATCTCACTTATTGTATCACTATTCTCTCACCAAAAAATATTCGGTGGCTATTCTCATTGATATATTGATACTCGCTGTTATTTATCTTTTAGATGCTCAGATGGTGTAAATATTTATGTTAAACTGATGATATATAGGAGAATTTACTCTTAACTTGGCGTCAACCGACAATTATGACATTTAACTTTGAATGTGCATAAGTAAATATTTAAATTTATATATTGAACAAATAGACACATTCGTCGTGACTCGTGCATGTCACCCTACATGGAAAATTTGTATTCTACATGGCGTCCTATAGTGTATTATGTCATGTAGGATATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTTCCTACTTGTGCACACTCAAAGTTGGAGGGCGTAGTTGTTTGTTAAAACCAAGTTAAGGGTAATTGTTCATGTATTATGTGATTTATATAGGAGTGTATTTAACTTATTGTGGAAAGTCACTTGCCTTATTTCTTACATTTGATAATATCACTTATGATGAAGATTCACTTATAATTATCTTGATCTGATTAGTGTAAAAAAAGAATTTATACTGTTAATATATAGAATTTAAACTCGATCTTAACATTCTGGTACGGAAGCATAGTTCGTGCAACAGTATAGTAGCAATCAGTTGTATTCAATAAAAGAAAGGCACTCTGTAGAAGTAAGCGTGTCTTTTTATTTGATCGTTGTAATCTGATTGATTATACATATTTGCTAGGTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAATT</genome_strand>
        <mrna_strand>CCAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCCATCTTATGACATTCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732255" ref_strand="+" ref_description="SGN-E732255 [LB01CG04]">
      <seq>cgcttaactacctaaaaactaatttagtttgtgtgaggtaaattcaaggatggcatctttggcaactcttgctgctgtgcagcccacaagtggcctagctggaagctccattgctggaactaagctacatgttaaatcatctcgccttaatgtcaagtctactaaatccaggtctgcttctgtggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatggcattcggtttatcctgttgcaaagtttgagcttgttttctaacatggtgtcgatcttatgacattcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80225" stop="82668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80521" g_stop="80691" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81615" g_stop="81741" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="298" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82001" g_stop="82367" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="665" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="675"/>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E732255" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80521" e_stop="80691"/>
          <exon e_start="81615" e_stop="81741"/>
          <exon e_start="82001" e_stop="82367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAGGTATATGTCGAAGGCTAGTCAGTTGAACATCCTTTTTCAAAAATGTATGTTGTGTATACAAGTTAAATATTACCTTTTATACATATATATATATATTAAATGTTAAATTACTAACTTAGCTACTGCTCATAATGTATAGAAGTTAATTAAACTCATATACTAAGGATGTATCAGGTTGCTAATCTCACTTATTGTATCACTATTCTCTCACCAAAAAATATTCGGTGGCTATTCTCATTGATATATTGATACTCGCTGTTATTTATCTTTTAGATGCTCAGATGGTGTAAATATTTATGTTAAACTGATGATATATAGGAGAATTTACTCTTAACTTGGCGTCAACCGACAATTATGACATTTAACTTTGAATGTGCATAAGTAAATATTTAAATTTATATATTGAACAAATAGACACATTCGTCGTGACTCGTGCATGTCACCCTACATGGAAAATTTGTATTCTACATGGCGTCCTATAGTGTATTATGTCATGTAGGATATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTTCCTACTTGTGCACACTCAAAGTTGGAGGGCGTAGTTGTTTGTTAAAACCAAGTTAAGGGTAATTGTTCATGTATTATGTGATTTATATAGGAGTGTATTTAACTTATTGTGGAAAGTCACTTGCCTTATTTCTTACATTTGATAATATCACTTATGATGAAGATTCACTTATAATTATCTTGATCTGATTAGTGTAAAAAAAGAATTTATACTGTTAATATATAGAATTTAAACTCGATCTTAACATTCTGGTACGGAAGCATAGTTCGTGCAACAGTATAGTAGCAATCAGTTGTATTCAATAAAAGAAAGGCACTCTGTAGAAGTAAGCGTGTCTTTTTATTTGATCGTTGTAATCTGATTGATTATACATATTTGCTAGGTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCA</genome_strand>
        <mrna_strand>CGCTTAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346108" ref_strand="+" ref_description="SGN-E346108 [cTOF-34-E23]">
      <seq>caataactacctaaaaactaatttagtttgtgtgaggtaaattcaaggatggcatctttggcaactcttgctgctgtgcagcccacaagtggcctagctggaagctccattgctggaactaagctacatgttaaatcatctcgccttaatgtcaagtctactaaatccaggtctgcttctgtggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatgggattcggtttatcctgttgcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80222" stop="82623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80522" g_stop="80691" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81615" g_stop="81741" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="297" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82001" g_stop="82325" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="622" r_length="325" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E346108" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80522" e_stop="80691"/>
          <exon e_start="81615" e_stop="81741"/>
          <exon e_start="82001" e_stop="82325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAGGTATATGTCGAAGGCTAGTCAGTTGAACATCCTTTTTCAAAAATGTATGTTGTGTATACAAGTTAAATATTACCTTTTATACATATATATATATATTAAATGTTAAATTACTAACTTAGCTACTGCTCATAATGTATAGAAGTTAATTAAACTCATATACTAAGGATGTATCAGGTTGCTAATCTCACTTATTGTATCACTATTCTCTCACCAAAAAATATTCGGTGGCTATTCTCATTGATATATTGATACTCGCTGTTATTTATCTTTTAGATGCTCAGATGGTGTAAATATTTATGTTAAACTGATGATATATAGGAGAATTTACTCTTAACTTGGCGTCAACCGACAATTATGACATTTAACTTTGAATGTGCATAAGTAAATATTTAAATTTATATATTGAACAAATAGACACATTCGTCGTGACTCGTGCATGTCACCCTACATGGAAAATTTGTATTCTACATGGCGTCCTATAGTGTATTATGTCATGTAGGATATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTTCCTACTTGTGCACACTCAAAGTTGGAGGGCGTAGTTGTTTGTTAAAACCAAGTTAAGGGTAATTGTTCATGTATTATGTGATTTATATAGGAGTGTATTTAACTTATTGTGGAAAGTCACTTGCCTTATTTCTTACATTTGATAATATCACTTATGATGAAGATTCACTTATAATTATCTTGATCTGATTAGTGTAAAAAAAGAATTTATACTGTTAATATATAGAATTTAAACTCGATCTTAACATTCTGGTACGGAAGCATAGTTCGTGCAACAGTATAGTAGCAATCAGTTGTATTCAATAAAAGAAAGGCACTCTGTAGAAGTAAGCGTGTCTTTTTATTTGATCGTTGTAATCTGATTGATTATACATATTTGCTAGGTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGT</genome_strand>
        <mrna_strand>CAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGGATTCGGTTTATCCTGTTGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345993" ref_strand="+" ref_description="SGN-E345993 [cTOF-24-I21]">
      <seq>aataactacctaaaaactaatttagtttgtgtgaggtaaattcaaggatggcatctttggcaactcttgctgctgtgcagcccacaagtggcctagctggaagctccattgctggaactaagctacatgttaaatcatctcgccttaatgtcaagtctactaaatccaggtctgcttctgtggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatnctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatggcattcggtttatcctgttgcaaagtttgagcttgttttctaacatgtggtcgatcttatgacattcaatttatcttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80223" stop="82681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80523" g_stop="80691" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81615" g_stop="81741" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="296" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82001" g_stop="82381" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="678" r_length="382" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E345993" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80523" e_stop="80691"/>
          <exon e_start="81615" e_stop="81741"/>
          <exon e_start="82001" e_stop="82381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAGGTATATGTCGAAGGCTAGTCAGTTGAACATCCTTTTTCAAAAATGTATGTTGTGTATACAAGTTAAATATTACCTTTTATACATATATATATATATTAAATGTTAAATTACTAACTTAGCTACTGCTCATAATGTATAGAAGTTAATTAAACTCATATACTAAGGATGTATCAGGTTGCTAATCTCACTTATTGTATCACTATTCTCTCACCAAAAAATATTCGGTGGCTATTCTCATTGATATATTGATACTCGCTGTTATTTATCTTTTAGATGCTCAGATGGTGTAAATATTTATGTTAAACTGATGATATATAGGAGAATTTACTCTTAACTTGGCGTCAACCGACAATTATGACATTTAACTTTGAATGTGCATAAGTAAATATTTAAATTTATATATTGAACAAATAGACACATTCGTCGTGACTCGTGCATGTCACCCTACATGGAAAATTTGTATTCTACATGGCGTCCTATAGTGTATTATGTCATGTAGGATATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTTCCTACTTGTGCACACTCAAAGTTGGAGGGCGTAGTTGTTTGTTAAAACCAAGTTAAGGGTAATTGTTCATGTATTATGTGATTTATATAGGAGTGTATTTAACTTATTGTGGAAAGTCACTTGCCTTATTTCTTACATTTGATAATATCACTTATGATGAAGATTCACTTATAATTATCTTGATCTGATTAGTGTAAAAAAAGAATTTATACTGTTAATATATAGAATTTAAACTCGATCTTAACATTCTGGTACGGAAGCATAGTTCGTGCAACAGTATAGTAGCAATCAGTTGTATTCAATAAAAGAAAGGCACTCTGTAGAAGTAAGCGTGTCTTTTTATTTGATCGTTGTAATCTGATTGATTATACATATTTGCTAGGTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTAT-CTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAATTTATCTTGCTGA</genome_strand>
        <mrna_strand>AATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATNCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGTGGTCGATCTTATGACATTCAATTTATCTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344247" ref_strand="+" ref_description="SGN-E344247 [cTOF-16-A21]">
      <seq>aataactacctaaaaactaatttagtttgtgtgaggtaaattcaaggatggcatctttggcaactcttgctgctgtgcagcccacaagtggcctagctggaagctccattgctggaactaatctacatgttaaatcatctcgccttaatgtcaagtctactaaatccaggtctgcttctgtggttgcaaagtatggtgacaagagtgtatattctgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcatatgcaccctcaccatacaactcccttcacagcaagttcttcgagacctttgctgctcctttcaccaagagaagactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacaggatcaagggatatactaccaattaagaaagggccgcaacttccacccaaacttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccctcattttgtaaatgatgtatctgtcgcccgcttgtaagtattcttgaagcctacaacatgagacctttgctacaagaagttaaatcttatggcattcggcgtatcctgttgcaaagtttgaacttgttttctaacatagtgtccatcttatgacattcaatttatcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80223" stop="82678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80523" g_stop="80691" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81615" g_stop="81741" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="296" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82001" g_stop="82378" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="674" r_length="378" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E344247" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80523" e_stop="80691"/>
          <exon e_start="81615" e_stop="81741"/>
          <exon e_start="82001" e_stop="82378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAGGTATATGTCGAAGGCTAGTCAGTTGAACATCCTTTTTCAAAAATGTATGTTGTGTATACAAGTTAAATATTACCTTTTATACATATATATATATATTAAATGTTAAATTACTAACTTAGCTACTGCTCATAATGTATAGAAGTTAATTAAACTCATATACTAAGGATGTATCAGGTTGCTAATCTCACTTATTGTATCACTATTCTCTCACCAAAAAATATTCGGTGGCTATTCTCATTGATATATTGATACTCGCTGTTATTTATCTTTTAGATGCTCAGATGGTGTAAATATTTATGTTAAACTGATGATATATAGGAGAATTTACTCTTAACTTGGCGTCAACCGACAATTATGACATTTAACTTTGAATGTGCATAAGTAAATATTTAAATTTATATATTGAACAAATAGACACATTCGTCGTGACTCGTGCATGTCACCCTACATGGAAAATTTGTATTCTACATGGCGTCCTATAGTGTATTATGTCATGTAGGATATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTTCCTACTTGTGCACACTCAAAGTTGGAGGGCGTAGTTGTTTGTTAAAACCAAGTTAAGGGTAATTGTTCATGTATTATGTGATTTATATAGGAGTGTATTTAACTTATTGTGGAAAGTCACTTGCCTTATTTCTTACATTTGATAATATCACTTATGATGAAGATTCACTTATAATTATCTTGATCTGATTAGTGTAAAAAAAGAATTTATACTGTTAATATATAGAATTTAAACTCGATCTTAACATTCTGGTACGGAAGCATAGTTCGTGCAACAGTATAGTAGCAATCAGTTGTATTCAATAAAAGAAAGGCACTCTGTAGAAGTAAGCGTGTCTTTTTATTTGATCGTTGTAATCTGATTGATTATACATATTTGCTAGGTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAATTTATCTTGC</genome_strand>
        <mrna_strand>AATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAATCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTCTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCATATGCACCCTCACCATACAACTCCCTTCAC...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAAGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGGATCAAGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAACTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCCTCATTTTGTAAATGATGTATCTGTCGCCCGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGCTACAAGAAGTTAAATCTTATGGCATTCGGCGTATCCTGTTGCAAAGTTTGAACTTGTTTTCTAACATAGTGTCCATCTTATGACATTCAATTTATCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346604" ref_strand="+" ref_description="SGN-E346604 [cTOF-28-B10]">
      <seq>aataactacctaaaacctaatttagtttgtgtgaggtaaattcaaggatggcatctttggcaactcttgctgctgtgcagcccacaagtggcctagctggaagctccattgctggaactaagctacatgttaaatcatctcgccttaatgtcaagtctactaaatccaggtctgcttctgtggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgntatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgtacaagaagttaaatcttatggcattcggtttatncctgttgcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80223" stop="82623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80523" g_stop="80691" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81615" g_stop="81741" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="296" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82001" g_stop="82323" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="620" r_length="324" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E346604" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80523" e_stop="80691"/>
          <exon e_start="81615" e_stop="81741"/>
          <exon e_start="82001" e_stop="82323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAGGTATATGTCGAAGGCTAGTCAGTTGAACATCCTTTTTCAAAAATGTATGTTGTGTATACAAGTTAAATATTACCTTTTATACATATATATATATATTAAATGTTAAATTACTAACTTAGCTACTGCTCATAATGTATAGAAGTTAATTAAACTCATATACTAAGGATGTATCAGGTTGCTAATCTCACTTATTGTATCACTATTCTCTCACCAAAAAATATTCGGTGGCTATTCTCATTGATATATTGATACTCGCTGTTATTTATCTTTTAGATGCTCAGATGGTGTAAATATTTATGTTAAACTGATGATATATAGGAGAATTTACTCTTAACTTGGCGTCAACCGACAATTATGACATTTAACTTTGAATGTGCATAAGTAAATATTTAAATTTATATATTGAACAAATAGACACATTCGTCGTGACTCGTGCATGTCACCCTACATGGAAAATTTGTATTCTACATGGCGTCCTATAGTGTATTATGTCATGTAGGATATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTTCCTACTTGTGCACACTCAAAGTTGGAGGGCGTAGTTGTTTGTTAAAACCAAGTTAAGGGTAATTGTTCATGTATTATGTGATTTATATAGGAGTGTATTTAACTTATTGTGGAAAGTCACTTGCCTTATTTCTTACATTTGATAATATCACTTATGATGAAGATTCACTTATAATTATCTTGATCTGATTAGTGTAAAAAAAGAATTTATACTGTTAATATATAGAATTTAAACTCGATCTTAACATTCTGGTACGGAAGCATAGTTCGTGCAACAGTATAGTAGCAATCAGTTGTATTCAATAAAAGAAAGGCACTCTGTAGAAGTAAGCGTGTCTTTTTATTTGATCGTTGTAATCTGATTGATTATACATATTTGCTAGGTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATG-TATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTAT-CCTGTTGCAAA</genome_strand>
        <mrna_strand>AATAACTACCTAAAACCTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGNTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTG-TACAAGAAGTTAAATCTTATGGCATTCGGTTTATNCCTGTTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732899" ref_strand="+" ref_description="SGN-E732899 [LB03BG07]">
      <seq>taactacctaaaaactaatttagtttgtgtgaggtaaattcaaggatggcatctttggcaactcttgctgctgtgcagcccacaagtggcctagctggaagctccattgctggaactaagctacatgttaaatcatctcgccttaatgtcaagtctactaaatccaggtctgcttctgtggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatggcattcggtttatcctgttgcaaagttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80225" stop="145100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80525" g_stop="80691" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81615" g_stop="81741" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="294" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82001" g_stop="82323" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="617" r_length="323" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82324" i_stop="82669" i_length="346">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82670" g_stop="82687" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="635" r_length="18" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E732899" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80525" e_stop="80691"/>
          <exon e_start="81615" e_stop="81741"/>
          <exon e_start="82001" e_stop="82323"/>
          <exon e_start="82670" e_stop="82687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAGGTATATGTCGAAGGCTAGTCAGTTGAACATCCTTTTTCAAAAATGTATGTTGTGTATACAAGTTAAATATTACCTTTTATACATATATATATATATTAAATGTTAAATTACTAACTTAGCTACTGCTCATAATGTATAGAAGTTAATTAAACTCATATACTAAGGATGTATCAGGTTGCTAATCTCACTTATTGTATCACTATTCTCTCACCAAAAAATATTCGGTGGCTATTCTCATTGATATATTGATACTCGCTGTTATTTATCTTTTAGATGCTCAGATGGTGTAAATATTTATGTTAAACTGATGATATATAGGAGAATTTACTCTTAACTTGGCGTCAACCGACAATTATGACATTTAACTTTGAATGTGCATAAGTAAATATTTAAATTTATATATTGAACAAATAGACACATTCGTCGTGACTCGTGCATGTCACCCTACATGGAAAATTTGTATTCTACATGGCGTCCTATAGTGTATTATGTCATGTAGGATATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTTCCTACTTGTGCACACTCAAAGTTGGAGGGCGTAGTTGTTTGTTAAAACCAAGTTAAGGGTAATTGTTCATGTATTATGTGATTTATATAGGAGTGTATTTAACTTATTGTGGAAAGTCACTTGCCTTATTTCTTACATTTGATAATATCACTTATGATGAAGATTCACTTATAATTATCTTGATCTGATTAGTGTAAAAAAAGAATTTATACTGTTAATATATAGAATTTAAACTCGATCTTAACATTCTGGTACGGAAGCATAGTTCGTGCAACAGTATAGTAGCAATCAGTTGTATTCAATAAAAGAAAGGCACTCTGTAGAAGTAAGCGTGTCTTTTTATTTGATCGTTGTAATCTGATTGATTATACATATTTGCTAGGTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAATTTATCTTGCTGAAATTCTACTTCTGTCGGTTCACGTAGGTGTCAATGCCTGTTAAATGTTTTTAACTAATCTTTGTTTAGGAAGTTACTGACTTCATATTTGCTCACTGTTTAATTGAAAGGAAAAATTACTTATAAATTGCAAGGGAATTGCCTTTAAATCGAAATGATTATACCATACCGACGTGTAAACTTCAAGTTGCAGATTACAAAACTCTCTTAGAAGAGGCAATACAAGGTAAGAATGGACAATAATAAAGTCCATTATTTCCATGGTTATTTGTCATGATATCTTCTTCAGAGTAAATCATTTCAAAAA</genome_strand>
        <mrna_strand>TAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAA..........................................................................................................................................................................................................................................................................................................................................................GTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739432" ref_strand="+" ref_description="SGN-E739432 [LC17BG05]">
      <seq>aactacctaaaaactaatttagtttgtgtgaggtaaattcaaggatggcatctttggcaactcttgctgctgtgcagcccacaagtggcctagctggaagctccattgctggaactaagctacatgttaaatcatctcgccttaatgtcaagtctactaaatccaggtctgcttctgtggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatggcattcggtttatcctgttgcaaagtttgagcttgttttctaacatggtgtcgatcttatgacattcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80226" stop="82668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80526" g_stop="80691" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81615" g_stop="81741" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="293" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82001" g_stop="82367" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="660" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="661" polyA_stop="671"/>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E739432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80526" e_stop="80691"/>
          <exon e_start="81615" e_stop="81741"/>
          <exon e_start="82001" e_stop="82367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAGGTATATGTCGAAGGCTAGTCAGTTGAACATCCTTTTTCAAAAATGTATGTTGTGTATACAAGTTAAATATTACCTTTTATACATATATATATATATTAAATGTTAAATTACTAACTTAGCTACTGCTCATAATGTATAGAAGTTAATTAAACTCATATACTAAGGATGTATCAGGTTGCTAATCTCACTTATTGTATCACTATTCTCTCACCAAAAAATATTCGGTGGCTATTCTCATTGATATATTGATACTCGCTGTTATTTATCTTTTAGATGCTCAGATGGTGTAAATATTTATGTTAAACTGATGATATATAGGAGAATTTACTCTTAACTTGGCGTCAACCGACAATTATGACATTTAACTTTGAATGTGCATAAGTAAATATTTAAATTTATATATTGAACAAATAGACACATTCGTCGTGACTCGTGCATGTCACCCTACATGGAAAATTTGTATTCTACATGGCGTCCTATAGTGTATTATGTCATGTAGGATATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTTCCTACTTGTGCACACTCAAAGTTGGAGGGCGTAGTTGTTTGTTAAAACCAAGTTAAGGGTAATTGTTCATGTATTATGTGATTTATATAGGAGTGTATTTAACTTATTGTGGAAAGTCACTTGCCTTATTTCTTACATTTGATAATATCACTTATGATGAAGATTCACTTATAATTATCTTGATCTGATTAGTGTAAAAAAAGAATTTATACTGTTAATATATAGAATTTAAACTCGATCTTAACATTCTGGTACGGAAGCATAGTTCGTGCAACAGTATAGTAGCAATCAGTTGTATTCAATAAAAGAAAGGCACTCTGTAGAAGTAAGCGTGTCTTTTTATTTGATCGTTGTAATCTGATTGATTATACATATTTGCTAGGTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCA</genome_strand>
        <mrna_strand>AACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732267" ref_strand="+" ref_description="SGN-E732267 [LB01CH04]">
      <seq>ccttaaactaatttagtttgtgtgaggtaaattcaaggatggcatctttggcaactcttgctgctgtgcagcccacaagtggcctagctggaagctccattgctggaactaagctacatgttaaatcatctcgccttaatgtcaagtctactaaatccaggtctgcttctgtggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatggcattcggttaannaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80236" stop="145106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80531" g_stop="80691" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81615" g_stop="81741" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="287" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82001" g_stop="82315" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="602" r_length="315" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82316" i_stop="82669" i_length="354">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.808" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82670" g_stop="82688" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="621" r_length="19" r_score="0.526"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E732267" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80531" e_stop="80691"/>
          <exon e_start="81615" e_stop="81741"/>
          <exon e_start="82001" e_stop="82315"/>
          <exon e_start="82670" e_stop="82688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAGGTATATGTCGAAGGCTAGTCAGTTGAACATCCTTTTTCAAAAATGTATGTTGTGTATACAAGTTAAATATTACCTTTTATACATATATATATATATTAAATGTTAAATTACTAACTTAGCTACTGCTCATAATGTATAGAAGTTAATTAAACTCATATACTAAGGATGTATCAGGTTGCTAATCTCACTTATTGTATCACTATTCTCTCACCAAAAAATATTCGGTGGCTATTCTCATTGATATATTGATACTCGCTGTTATTTATCTTTTAGATGCTCAGATGGTGTAAATATTTATGTTAAACTGATGATATATAGGAGAATTTACTCTTAACTTGGCGTCAACCGACAATTATGACATTTAACTTTGAATGTGCATAAGTAAATATTTAAATTTATATATTGAACAAATAGACACATTCGTCGTGACTCGTGCATGTCACCCTACATGGAAAATTTGTATTCTACATGGCGTCCTATAGTGTATTATGTCATGTAGGATATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTTCCTACTTGTGCACACTCAAAGTTGGAGGGCGTAGTTGTTTGTTAAAACCAAGTTAAGGGTAATTGTTCATGTATTATGTGATTTATATAGGAGTGTATTTAACTTATTGTGGAAAGTCACTTGCCTTATTTCTTACATTTGATAATATCACTTATGATGAAGATTCACTTATAATTATCTTGATCTGATTAGTGTAAAAAAAGAATTTATACTGTTAATATATAGAATTTAAACTCGATCTTAACATTCTGGTACGGAAGCATAGTTCGTGCAACAGTATAGTAGCAATCAGTTGTATTCAATAAAAGAAAGGCACTCTGTAGAAGTAAGCGTGTCTTTTTATTTGATCGTTGTAATCTGATTGATTATACATATTTGCTAGGTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAATTTATCTTGCTGAAATTCTACTTCTGTCGGTTCACGTAGGTGTCAATGCCTGTTAAATGTTTTTAACTAATCTTTGTTTAGGAAGTTACTGACTTCATATTTGCTCACTGTTTAATTGAAAGGAAAAATTACTTATAAATTGCAAGGGAATTGCCTTTAAATCGAAATGATTATACCATACCGACGTGTAAACTTCAAGTTGCAGATTACAAAACTCTCTTAGAAGAGGCAATACAAGGTAAGAATGGACAATAATAAAGTCCATTATTTCCATGGTTATTTGTCATGATATCTTCTTCAGAGTAAATCATTTCAAAAAG</genome_strand>
        <mrna_strand>CCTTAAA-CTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTAANNAA..................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288641" ref_strand="+" ref_description="SGN-E288641 [cLES-8-F15]">
      <seq>aaaaactaatttagtttgtgtgaggtaaattcaaggatggcatctttggcaactcttgctgctgtgcagcccacaagtggcctagctggaagctccattgctggaactaagctacatgttaaatcatctcgccttaatgtcaagtctactaaatccaggtctgcttctgtggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcaggtcaacagcatcaggggatatactaccaattaagaaaagggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80234" stop="82439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80534" g_stop="80691" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81615" g_stop="81741" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="285" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82001" g_stop="82140" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="425" r_length="140" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E288641" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80534" e_stop="80691"/>
          <exon e_start="81615" e_stop="81741"/>
          <exon e_start="82001" e_stop="82140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAGGTATATGTCGAAGGCTAGTCAGTTGAACATCCTTTTTCAAAAATGTATGTTGTGTATACAAGTTAAATATTACCTTTTATACATATATATATATATTAAATGTTAAATTACTAACTTAGCTACTGCTCATAATGTATAGAAGTTAATTAAACTCATATACTAAGGATGTATCAGGTTGCTAATCTCACTTATTGTATCACTATTCTCTCACCAAAAAATATTCGGTGGCTATTCTCATTGATATATTGATACTCGCTGTTATTTATCTTTTAGATGCTCAGATGGTGTAAATATTTATGTTAAACTGATGATATATAGGAGAATTTACTCTTAACTTGGCGTCAACCGACAATTATGACATTTAACTTTGAATGTGCATAAGTAAATATTTAAATTTATATATTGAACAAATAGACACATTCGTCGTGACTCGTGCATGTCACCCTACATGGAAAATTTGTATTCTACATGGCGTCCTATAGTGTATTATGTCATGTAGGATATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTTCCTACTTGTGCACACTCAAAGTTGGAGGGCGTAGTTGTTTGTTAAAACCAAGTTAAGGGTAATTGTTCATGTATTATGTGATTTATATAGGAGTGTATTTAACTTATTGTGGAAAGTCACTTGCCTTATTTCTTACATTTGATAATATCACTTATGATGAAGATTCACTTATAATTATCTTGATCTGATTAGTGTAAAAAAAGAATTTATACTGTTAATATATAGAATTTAAACTCGATCTTAACATTCTGGTACGGAAGCATAGTTCGTGCAACAGTATAGTAGCAATCAGTTGTATTCAATAAAAGAAAGGCACTCTGTAGAAGTAAGCGTGTCTTTTTATTTGATCGTTGTAATCTGATTGATTATACATATTTGCTAGGTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCC</genome_strand>
        <mrna_strand>AAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGGTCAACAGCATCAGGGGATATACTACCAATTAAGAAAAGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293718" ref_strand="+" ref_description="SGN-E293718 [cLET-21-L2]">
      <seq>taatttagtttgtgtgaggtaaattcaaggatggcatctttggcaactcttgctgctgtgcagcccacaagtggcctagctggaagctccattgctggaactaagctacatgttaaatcatctcgccttaatgtcaagtctactaaatccaggtctgcttctgtggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80240" stop="82530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80540" g_stop="80691" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81615" g_stop="81741" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="279" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82001" g_stop="82230" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="509" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E293718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80540" e_stop="80691"/>
          <exon e_start="81615" e_stop="81741"/>
          <exon e_start="82001" e_stop="82230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAGGTATATGTCGAAGGCTAGTCAGTTGAACATCCTTTTTCAAAAATGTATGTTGTGTATACAAGTTAAATATTACCTTTTATACATATATATATATATTAAATGTTAAATTACTAACTTAGCTACTGCTCATAATGTATAGAAGTTAATTAAACTCATATACTAAGGATGTATCAGGTTGCTAATCTCACTTATTGTATCACTATTCTCTCACCAAAAAATATTCGGTGGCTATTCTCATTGATATATTGATACTCGCTGTTATTTATCTTTTAGATGCTCAGATGGTGTAAATATTTATGTTAAACTGATGATATATAGGAGAATTTACTCTTAACTTGGCGTCAACCGACAATTATGACATTTAACTTTGAATGTGCATAAGTAAATATTTAAATTTATATATTGAACAAATAGACACATTCGTCGTGACTCGTGCATGTCACCCTACATGGAAAATTTGTATTCTACATGGCGTCCTATAGTGTATTATGTCATGTAGGATATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTTCCTACTTGTGCACACTCAAAGTTGGAGGGCGTAGTTGTTTGTTAAAACCAAGTTAAGGGTAATTGTTCATGTATTATGTGATTTATATAGGAGTGTATTTAACTTATTGTGGAAAGTCACTTGCCTTATTTCTTACATTTGATAATATCACTTATGATGAAGATTCACTTATAATTATCTTGATCTGATTAGTGTAAAAAAAGAATTTATACTGTTAATATATAGAATTTAAACTCGATCTTAACATTCTGGTACGGAAGCATAGTTCGTGCAACAGTATAGTAGCAATCAGTTGTATTCAATAAAAGAAAGGCACTCTGTAGAAGTAAGCGTGTCTTTTTATTTGATCGTTGTAATCTGATTGATTATACATATTTGCTAGGTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCT</genome_strand>
        <mrna_strand>TAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736514" ref_strand="+" ref_description="SGN-E736514 [LC06AC07]">
      <seq>atttagtttgtgtgaggtaaattcaaggatggcatctttggcaactcttgctgctgtgcagcccacaagtggcctagctggaagctccattgctggaactaagctacatgttaaatcatctcgccttaatgtcaagtctactaaatccaggtctgcttctgtggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatggcattcggtttatcctgttgcaaagtttgagcttgttttctaacatggtgtcgatcttatgacattcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80242" stop="145110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80542" g_stop="80691" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81615" g_stop="81741" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="277" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82001" g_stop="82388" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="665" r_length="388" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E736514" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80542" e_stop="80691"/>
          <exon e_start="81615" e_stop="81741"/>
          <exon e_start="82001" e_stop="82388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAGGTATATGTCGAAGGCTAGTCAGTTGAACATCCTTTTTCAAAAATGTATGTTGTGTATACAAGTTAAATATTACCTTTTATACATATATATATATATTAAATGTTAAATTACTAACTTAGCTACTGCTCATAATGTATAGAAGTTAATTAAACTCATATACTAAGGATGTATCAGGTTGCTAATCTCACTTATTGTATCACTATTCTCTCACCAAAAAATATTCGGTGGCTATTCTCATTGATATATTGATACTCGCTGTTATTTATCTTTTAGATGCTCAGATGGTGTAAATATTTATGTTAAACTGATGATATATAGGAGAATTTACTCTTAACTTGGCGTCAACCGACAATTATGACATTTAACTTTGAATGTGCATAAGTAAATATTTAAATTTATATATTGAACAAATAGACACATTCGTCGTGACTCGTGCATGTCACCCTACATGGAAAATTTGTATTCTACATGGCGTCCTATAGTGTATTATGTCATGTAGGATATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTTCCTACTTGTGCACACTCAAAGTTGGAGGGCGTAGTTGTTTGTTAAAACCAAGTTAAGGGTAATTGTTCATGTATTATGTGATTTATATAGGAGTGTATTTAACTTATTGTGGAAAGTCACTTGCCTTATTTCTTACATTTGATAATATCACTTATGATGAAGATTCACTTATAATTATCTTGATCTGATTAGTGTAAAAAAAGAATTTATACTGTTAATATATAGAATTTAAACTCGATCTTAACATTCTGGTACGGAAGCATAGTTCGTGCAACAGTATAGTAGCAATCAGTTGTATTCAATAAAAGAAAGGCACTCTGTAGAAGTAAGCGTGTCTTTTTATTTGATCGTTGTAATCTGATTGATTATACATATTTGCTAGGTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAATTTATCTTGCTGAAATTCTA</genome_strand>
        <mrna_strand>ATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737120" ref_strand="+" ref_description="SGN-E737120 [LC08CC02]">
      <seq>atttagtttgtgtgaggtaaattcaaggatggcatctttggcaactcttgctgctgtgcagcccacaagtggcctagctggaagctccattgctggaactaagctacatgttaaatcatctcgccttaatgtcaagtctactaaatccaggtctgcttctgtggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatggcattcggtttatcctgttgcaaagtttgagcttgttttctaacatggtgtcgatcttatgacattcnnnnnnnnaananananaaaaaaaaaaanaaccctcgggggggggccgggacccaattcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80242" stop="82666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80542" g_stop="80691" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81615" g_stop="81741" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="277" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82001" g_stop="82367" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="644" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="659" polyA_stop="671"/>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E737120" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80542" e_stop="80691"/>
          <exon e_start="81615" e_stop="81741"/>
          <exon e_start="82001" e_stop="82367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAGGTATATGTCGAAGGCTAGTCAGTTGAACATCCTTTTTCAAAAATGTATGTTGTGTATACAAGTTAAATATTACCTTTTATACATATATATATATATTAAATGTTAAATTACTAACTTAGCTACTGCTCATAATGTATAGAAGTTAATTAAACTCATATACTAAGGATGTATCAGGTTGCTAATCTCACTTATTGTATCACTATTCTCTCACCAAAAAATATTCGGTGGCTATTCTCATTGATATATTGATACTCGCTGTTATTTATCTTTTAGATGCTCAGATGGTGTAAATATTTATGTTAAACTGATGATATATAGGAGAATTTACTCTTAACTTGGCGTCAACCGACAATTATGACATTTAACTTTGAATGTGCATAAGTAAATATTTAAATTTATATATTGAACAAATAGACACATTCGTCGTGACTCGTGCATGTCACCCTACATGGAAAATTTGTATTCTACATGGCGTCCTATAGTGTATTATGTCATGTAGGATATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTTCCTACTTGTGCACACTCAAAGTTGGAGGGCGTAGTTGTTTGTTAAAACCAAGTTAAGGGTAATTGTTCATGTATTATGTGATTTATATAGGAGTGTATTTAACTTATTGTGGAAAGTCACTTGCCTTATTTCTTACATTTGATAATATCACTTATGATGAAGATTCACTTATAATTATCTTGATCTGATTAGTGTAAAAAAAGAATTTATACTGTTAATATATAGAATTTAAACTCGATCTTAACATTCTGGTACGGAAGCATAGTTCGTGCAACAGTATAGTAGCAATCAGTTGTATTCAATAAAAGAAAGGCACTCTGTAGAAGTAAGCGTGTCTTTTTATTTGATCGTTGTAATCTGATTGATTATACATATTTGCTAGGTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCA</genome_strand>
        <mrna_strand>ATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283919" ref_strand="+" ref_description="SGN-E283919 [cLER-13-M20]">
      <seq>ttgtgtgaggtaaattcaaggatggcatctttggcaactcttgctgctgtgcagcccacaagtggcctagctggaagctccattgctggaactaagctacatgttaaatcatctcgccttaatgtcaagtctactaaatccaggtctgcttctgtggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcaaatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80249" stop="82598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80549" g_stop="80691" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81615" g_stop="81741" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="270" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82001" g_stop="82298" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="568" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E283919" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80549" e_stop="80691"/>
          <exon e_start="81615" e_stop="81741"/>
          <exon e_start="82001" e_stop="82298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAGGTATATGTCGAAGGCTAGTCAGTTGAACATCCTTTTTCAAAAATGTATGTTGTGTATACAAGTTAAATATTACCTTTTATACATATATATATATATTAAATGTTAAATTACTAACTTAGCTACTGCTCATAATGTATAGAAGTTAATTAAACTCATATACTAAGGATGTATCAGGTTGCTAATCTCACTTATTGTATCACTATTCTCTCACCAAAAAATATTCGGTGGCTATTCTCATTGATATATTGATACTCGCTGTTATTTATCTTTTAGATGCTCAGATGGTGTAAATATTTATGTTAAACTGATGATATATAGGAGAATTTACTCTTAACTTGGCGTCAACCGACAATTATGACATTTAACTTTGAATGTGCATAAGTAAATATTTAAATTTATATATTGAACAAATAGACACATTCGTCGTGACTCGTGCATGTCACCCTACATGGAAAATTTGTATTCTACATGGCGTCCTATAGTGTATTATGTCATGTAGGATATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTTCCTACTTGTGCACACTCAAAGTTGGAGGGCGTAGTTGTTTGTTAAAACCAAGTTAAGGGTAATTGTTCATGTATTATGTGATTTATATAGGAGTGTATTTAACTTATTGTGGAAAGTCACTTGCCTTATTTCTTACATTTGATAATATCACTTATGATGAAGATTCACTTATAATTATCTTGATCTGATTAGTGTAAAAAAAGAATTTATACTGTTAATATATAGAATTTAAACTCGATCTTAACATTCTGGTACGGAAGCATAGTTCGTGCAACAGTATAGTAGCAATCAGTTGTATTCAATAAAAGAAAGGCACTCTGTAGAAGTAAGCGTGTCTTTTTATTTGATCGTTGTAATCTGATTGATTATACATATTTGCTAGGTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTAT</genome_strand>
        <mrna_strand>TTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAAATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290915" ref_strand="+" ref_description="SGN-E290915 [cLET-8-G15]">
      <seq>ggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatggcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="81327" stop="82602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81627" g_stop="81741" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82001" g_stop="82301" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="416" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="426"/>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E290915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81627" e_stop="81741"/>
          <exon e_start="82001" e_stop="82301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGC</genome_strand>
        <mrna_strand>GGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283548" ref_strand="-" ref_description="SGN-E283548 [cLER-12-B2]">
      <seq>caacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatggcattcggtttatcctgttgcaaagtttgagcttgttttctaacatggtgtcgatcttatgacattcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="81378" stop="82668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81678" g_stop="81741" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82001" g_stop="82372" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="436" r_length="372" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E283548" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283548" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81678" e_stop="81741"/>
          <exon e_start="82001" e_stop="82372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAATTTA</genome_strand>
        <mrna_strand>CAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734391" ref_strand="+" ref_description="SGN-E734391 [LB12CB11]">
      <seq>gttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatggcattcggtttatcctgttgcaaagtttgagcttgttttctaacatggtgtcgatcttatgacattcaatttatcttgctgaaattctacttctgtcggttcacgtaggtgtcaatgcctgttaaatgtttttaactaatctttgtttaggaagttactgacttcatatttgctcactgtttaattgaaaggaaaaattacttataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="81706" stop="145103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82006" g_stop="82520" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E734391" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82006" e_stop="82520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAATTTATCTTGCTGAAATTCTACTTCTGTCGGTTCACGTAGGTGTCAATGCCTGTTAAATGTTTTTAACTAATCTTTGTTTAGGAAGTTACTGACTTCATATTTGCTCACTGTTTAATTGAAAGGAAAAATTACTTATAAATTGCAAGGGAATT</genome_strand>
        <mrna_strand>GTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAATTTATCTTGCTGAAATTCTACTTCTGTCGGTTCACGTAGGTGTCAATGCCTGTTAAATGTTTTTAACTAATCTTTGTTTAGGAAGTTACTGACTTCATATTTGCTCACTGTTTAATTGAAAGGAAAAATTACTTATAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373455" ref_strand="+" ref_description="SGN-E373455 [TUS-31-L18](-)">
      <seq>caccaaaaaaggactgttgcttaaatttttgatactgggaggtgggtcaacttttgcatacttcagttcaacagcatcaggggatatactaccaattaaaaaagggccgcaacttccacccaagcttggtccacgcggaaaaatttaattttttttcaatcaagctttttcaaccttcattttgtaattaatgtatctgtcgtcagcttgtaagtatttttgaagcctacaacatgagacctttgttacaaaaagttaaattttatggcattcggtttatcctgttgcaaagtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="81733" stop="145124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82033" g_stop="82329" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82330" i_stop="82573" i_length="244">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.333" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82574" g_stop="82605" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="329" r_length="32" r_score="0.469"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E373455" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82033" e_stop="82329"/>
          <exon e_start="82574" e_stop="82605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAATTTATCTTGCTGAAATTCTACTTCTGTCGGTTCACGTAGGTGTCAATGCCTGTTAAATGTTTTTAACTAATCTTTGTTTAGGAAGTTACTGACTTCATATTTGCTCACTGTTTAATTGAAAGGAAAAATTACTTATAAATTGCAAGGGAATTGCCTTTAAATCGAAATGATTATACCATACCGACGTGTAAACTTCAAGTTGCAGATTACAAAACTCTCTTAGAAGAGGCAATACAA</genome_strand>
        <mrna_strand>CACCAAAAAAGGACTGTTGCTTAAATTTTTGATACTGGGAGGTGGGTCAACTTTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAAAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAAATTTAATTTTTTTTCAATCAAGCTTTTTCAACCTTCATTTTGTAATTAATGTATCTGTCGTCAGCTTGTAAGTATTTTTGAAGCCTACAACATGAGACCTTTGTTACAAAAAGTTAAATTTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTAA....................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373456" ref_strand="+" ref_description="SGN-E373456 [TUS-31-L18]">
      <seq>accaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatggcattcggtttatcctgttgcaaagttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="81734" stop="145124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82034" g_stop="82323" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82324" i_stop="82573" i_length="250">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.333" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82574" g_stop="82606" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="323" r_length="33" r_score="0.485"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82607" i_stop="82669" i_length="63">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.808" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82670" g_stop="82675" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="329" r_length="6" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E373456" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82034" e_stop="82323"/>
          <exon e_start="82574" e_stop="82606"/>
          <exon e_start="82670" e_stop="82675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAATTTATCTTGCTGAAATTCTACTTCTGTCGGTTCACGTAGGTGTCAATGCCTGTTAAATGTTTTTAACTAATCTTTGTTTAGGAAGTTACTGACTTCATATTTGCTCACTGTTTAATTGAAAGGAAAAATTACTTATAAATTGCAAGGGAATTGCCTTTAAATCGAAATGATTATACCATACCGACGTGTAAACTTCAAGTTGCAGATTACAAAACTCTCTTAGAAGAGGCAATACAAGGTAAGAATGGACAATAATAAAGTCCATTATTTCCATGGTTATTTGTCATGATATCTTCTTCAGAGTAAA</genome_strand>
        <mrna_strand>ACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAA..........................................................................................................................................................................................................................................................GTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA...............................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292341" ref_strand="+" ref_description="SGN-E292341 [cLET-1-E4]">
      <seq>accaagagaggactggtgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagctcaacagcatcaggggatatactaccaattaagaaagggccgcaacttgcacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgacagctcgtaagtattctcgaagcctacaacatgagacctttgttacaagaagtgaaatcttatggcattcggcttatcctgttgcagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="81734" stop="82625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82034" g_stop="82325" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E292341" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82034" e_stop="82325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGT</genome_strand>
        <mrna_strand>ACCAAGAGAGGACTGGTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGCTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTGCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGACAGCTCGTAAGTATTCTCGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTGAAATCTTATGGCATTCGGCTTATCCTGTTGCAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290914" ref_strand="+" ref_description="SGN-E290914 [cLET-8-G11]">
      <seq>caagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatggcattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="81736" stop="82604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82036" g_stop="82301" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="270" polyA_stop="279"/>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E290914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82036" e_stop="82301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGC</genome_strand>
        <mrna_strand>CAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348831" ref_strand="+" ref_description="SGN-E348831 [cTOF-29-N11]">
      <seq>aggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatggcattcggtttatcctgttgcaaagtttgagcttgttttctaacatggtgtcgatcttatgacattcaatttatcttgctgaaattctacttctgtcggttcacgtaggtgtcaatgcctgttaaatgtttttaactaatctttgtttaggaagttactgacttcatatttgctcactgtttaattgaaaggaaaaattacttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="81742" stop="143973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82042" g_stop="82514" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E348831" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82042" e_stop="82514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAATTTATCTTGCTGAAATTCTACTTCTGTCGGTTCACGTAGGTGTCAATGCCTGTTAAATGTTTTTAACTAATCTTTGTTTAGGAAGTTACTGACTTCATATTTGCTCACTGTTTAATTGAAAGGAAAAATTACTTATAAATTGCAAG</genome_strand>
        <mrna_strand>AGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAATTTATCTTGCTGAAATTCTACTTCTGTCGGTTCACGTAGGTGTCAATGCCTGTTAAATGTTTTTAACTAATCTTTGTTTAGGAAGTTACTGACTTCATATTTGCTCACTGTTTAATTGAAAGGAAAAATTACTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746682" ref_strand="+" ref_description="SGN-E746682 [GI|57869095]">
      <seq>ggcacgagagaaagctattcaagaataatagagagcagggcgcacacagtgatgtcacggattgaagatgttctccaagtagatgctacggcccaaaatccttcctgtgctgatctgaagaggtctcctttaagagattcactacgggtatcaccatcaggcagcttcccaaatgctagggaagaagtagaaaagcttaacgctgcagagaatccaacgtcaatgacattgttggatttcatgggttggacagtagaacaaggagataatgacacaaagaaagatgtgaaggaggatatagacgtcgatgcaaagaaaccacctagttatagtttacnaacaagaaactttcttacttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="83556" stop="82607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83264" g_stop="82907" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E746682" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83264" e_stop="82907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTTTAGAAAGCTATTCAAGAATAATAGAGAGCAGGGCGCACACAGTGATGTCACGGATTGAAGATGTTCTCCAAGTAGATGCTACGGCCCAAAATCCTTCCTGTGCTGATCTGAAGAGGTCTCCTTTAAGAGATTCACTACGGGTATCACCATCAGGCAGCTTCCCAAATGCTAGGGAAGAAGTAGAAAAGCTTAACGCTGCAGAGAATCCAACGTCAATGACATTGTTGGATTTCATGGGTTGGACAGTAGAACAAGGAGATAATGACACAAAGAAAGATGTGAAGGAGGATATAGACGTCGATGCAAAGAAACCACCTAG-TATAG-TTACAAACAAGAAACTTTCTTACTTAG</genome_strand>
        <mrna_strand>GGCACGAGAGAAAGCTATTCAAGAATAATAGAGAGCAGGGCGCACACAGTGATGTCACGGATTGAAGATGTTCTCCAAGTAGATGCTACGGCCCAAAATCCTTCCTGTGCTGATCTGAAGAGGTCTCCTTTAAGAGATTCACTACGGGTATCACCATCAGGCAGCTTCCCAAATGCTAGGGAAGAAGTAGAAAAGCTTAACGCTGCAGAGAATCCAACGTCAATGACATTGTTGGATTTCATGGGTTGGACAGTAGAACAAGGAGATAATGACACAAAGAAAGATGTGAAGGAGGATATAGACGTCGATGCAAAGAAACCACCTAGTTATAGTTTACNAACAAGAAACTTTCTTACTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361721" ref_strand="+" ref_description="SGN-E361721 [cLPP-12-D12]">
      <seq>ttgtttttccttcttttcacctcctctttatatccgtttcctcaagaacaattatatttattgcattgtcactagtgtaacgtatttcaattcagcttgaatcaaaaagatggttcgagcagcgcttgaggaagcgaaagaaatgtgcaaggcaaagttgttgcatttcaaaggaaaatctgaagatgttattattgagactagtaatactagtgattctggggatgaattggccacatcgaaaagtgaagatcagcctgtgtttagtcgcagtgagtctattatgatgcgaccaaacgagacccctgttgtctctagcccacccacgaaacagggaccaccttcagatatggagctgatgagggaaaaatttgcaaagttgttgctcggcgaggatatgtctggtggaggaaagggtgtgtcttctgcgttggcattgtcaaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85793" stop="84607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85493" g_stop="85143" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85142" i_stop="85007" i_length="136">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85006" g_stop="84907" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="447" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E361721" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85493" e_stop="85143"/>
          <exon e_start="85006" e_stop="84907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTTCCTTCTTTTCACCTCCTCTTTATATCCGTTTCCTCAAGAACAATTATATCTATTGCATTGTCACTAGTGTAACATACCTATTTCAATTCAGCTTGAATCAAAAAGATGGTTCGAGCAGCGCTTGAGGAAGCGAAAGAAATGTGCAAGGCAAAGTTGTTGCATTTCAAAGGAAAATCTGAAGATGTTATTATTGAGACTAGTAATACTAGTGACTCTGGGGATGAATTGGCCACATCGAAAAGTGAAGATCAGCCTGTGTTTAGTCGCAGTGAGTCTGTTATGATGCGACCAAACGAGACCCCTGTTGTCTCTAGCCCACCCGCGAAACAGGGCCCACCTTCAGGCAAGATATTTGTTGCAATTAAATAACTACCTGCATTGTACATTATAACAACAATTACGCCTCACTAGTTAACAAAGGGAGTTTAGATCTCTGTTTCCCCTCTCTCTGCATTCCATGTGATACTTTTTCTATATAGATATGGAGCTGATGAGGGAAAAATTTGCAAAGTTGTTGCTTGGCGAGGATATGTCTGGTGGAGGAAAGGGTGTGTCTTCTGCGTTGGCATTGTCAAACGC</genome_strand>
        <mrna_strand>TTGTTTTTCCTTCTTTTCACCTCCTCTTTATATCCGTTTCCTCAAGAACAATTATATTTATTGCATTGTCACTAGTGTAACGTA----TTTCAATTCAGCTTGAATCAAAAAGATGGTTCGAGCAGCGCTTGAGGAAGCGAAAGAAATGTGCAAGGCAAAGTTGTTGCATTTCAAAGGAAAATCTGAAGATGTTATTATTGAGACTAGTAATACTAGTGATTCTGGGGATGAATTGGCCACATCGAAAAGTGAAGATCAGCCTGTGTTTAGTCGCAGTGAGTCTATTATGATGCGACCAAACGAGACCCCTGTTGTCTCTAGCCCACCCACGAAACAGGGACCACCTTCAG........................................................................................................................................ATATGGAGCTGATGAGGGAAAAATTTGCAAAGTTGTTGCTCGGCGAGGATATGTCTGGTGGAGGAAAGGGTGTGTCTTCTGCGTTGGCATTGTCAAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362252" ref_strand="+" ref_description="SGN-E362252 [cLPP-10-I4]">
      <seq>ttgtcactagtgtaacgtatttcaattcagcttgaatcaaaaagatggttcgagcagcgcttgaggaagcgaaagaaatgtgcaaggcaaagttgttgcatttcaaaggaaaatctgaagatgttattattgagactagtaatactagtgattctggggatgaattggccacatcgaaaagtgaagatcagcctgtgtttagtcgcagtgagtctattatgatgcgaccaaacgagacccctgttgtctctagcccacccacgaaacagggaccaccttcagatatggagctgatgagggaaaaatttgcaaagttgttgctcggcgaggatatgtctggtggaggaaagggtgtgtcttctgcgttggcattgtcaaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85710" stop="84607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85428" g_stop="85143" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85142" i_stop="85007" i_length="136">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85006" g_stop="84907" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="382" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E362252" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85428" e_stop="85143"/>
          <exon e_start="85006" e_stop="84907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCACTAGTGTAACATACCTATTTCAATTCAGCTTGAATCAAAAAGATGGTTCGAGCAGCGCTTGAGGAAGCGAAAGAAATGTGCAAGGCAAAGTTGTTGCATTTCAAAGGAAAATCTGAAGATGTTATTATTGAGACTAGTAATACTAGTGACTCTGGGGATGAATTGGCCACATCGAAAAGTGAAGATCAGCCTGTGTTTAGTCGCAGTGAGTCTGTTATGATGCGACCAAACGAGACCCCTGTTGTCTCTAGCCCACCCGCGAAACAGGGCCCACCTTCAGGCAAGATATTTGTTGCAATTAAATAACTACCTGCATTGTACATTATAACAACAATTACGCCTCACTAGTTAACAAAGGGAGTTTAGATCTCTGTTTCCCCTCTCTCTGCATTCCATGTGATACTTTTTCTATATAGATATGGAGCTGATGAGGGAAAAATTTGCAAAGTTGTTGCTTGGCGAGGATATGTCTGGTGGAGGAAAGGGTGTGTCTTCTGCGTTGGCATTGTCAAACGC</genome_strand>
        <mrna_strand>TTGTCACTAGTGT---A-ACGTATTTCAATTCAGCTTGAATCAAAAAGATGGTTCGAGCAGCGCTTGAGGAAGCGAAAGAAATGTGCAAGGCAAAGTTGTTGCATTTCAAAGGAAAATCTGAAGATGTTATTATTGAGACTAGTAATACTAGTGATTCTGGGGATGAATTGGCCACATCGAAAAGTGAAGATCAGCCTGTGTTTAGTCGCAGTGAGTCTATTATGATGCGACCAAACGAGACCCCTGTTGTCTCTAGCCCACCCACGAAACAGGGACCACCTTCAG........................................................................................................................................ATATGGAGCTGATGAGGGAAAAATTTGCAAAGTTGTTGCTCGGCGAGGATATGTCTGGTGGAGGAAAGGGTGTGTCTTCTGCGTTGGCATTGTCAAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364713" ref_strand="+" ref_description="SGN-E364713 [cLPP-18-P4]">
      <seq>cattgtttttccttcttttcacctgctctttatatccgttgcctcaagaacaattatatttattgcattgtcactagtgtaacgtatttcaattcagcttgaatcaaaaagatggttcgagcagcgcttgaggaagcgaaagaaatgtgcaaggcaaagttgttgcatttcaaaggaaaatctgaagatgttattattgatactagaaatactagtgattctggggatgaatcggccacatcgaaaagtgaagatcagcctgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85795" stop="84927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85495" g_stop="85227" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E364713" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85495" e_stop="85227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAATTTTCCTTCTTTTCACCTCCTCTTTATATCCGTTTCCTCAAGAACAATTATATCTATTGCATTGTCACTAGTGTAACATACCTATTTCAATTCAGCTTGAATCAAAAAGATGGTTCGAGCAGCGCTTGAGGAAGCGAAAGAAATGTGCAAGGCAAAGTTGTTGCATTTCAAAGGAAAATCTGAAGATGTTATTATTGAGACTAGTAATACTAGTGACTCTGGGGATGAATTGGCCACATCGAAAAGTGAAGATCAGCCTGTGT</genome_strand>
        <mrna_strand>CATTGTTTTTCCTTCTTTTCACCTGCTCTTTATATCCGTTGCCTCAAGAACAATTATATTTATTGCATTGTCACTAGTGTAACGTA----TTTCAATTCAGCTTGAATCAAAAAGATGGTTCGAGCAGCGCTTGAGGAAGCGAAAGAAATGTGCAAGGCAAAGTTGTTGCATTTCAAAGGAAAATCTGAAGATGTTATTATTGATACTAGAAATACTAGTGATTCTGGGGATGAATCGGCCACATCGAAAAGTGAAGATCAGCCTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737259" ref_strand="+" ref_description="SGN-E737259 [LC09AC01]">
      <seq>ctcatatagaagaaaaatggaatctataggagtactaatggcgtgtccaatgtcatcatacttagaacaacaactcgataatcgattcaacctcatacgttactggaacttctccgataagaaacaattcatcaacgactacgctcattcaatacgtgctgttgtgggaaacgctgctgctggtgctgatgcagagcttatcgaggcgttgcctcagctagaaattgtggctagtttcagtgttggtttagataagattgatttgaacaagtgtaaagagaagggtattagagtgactaatacaccagatgtgttaactgaggatgttgctgatcttgctattggattaatgttggctgtgctaaggaggatttgcgagtctgatcgatatgttaagaagggattgtggaaggctggtgatttcgcgttgacttctaagtttagtggcaaaagagttggtatcataggattagggaggattggcttagcaattgcaaagagagcagaggcttttgattgtccaatcagttactacgcgcgatcagaaaagacaaatacgaattacaaatactatccaactgtagtagaactcgctaccaattgtgagatcctggttgtggcgtgtgcactaactcctgagactcgttacattgtcaaccgcgaagtgattgatgcattaggtgcaaaagggattcttatcaacattggaaggggacctcatgttgatgaaaaagagatggtatcttctcttcttgatggtcgattangaggcgctggccttgatgtgtttgagaatgaacctgaagtccctgataatctgttcggccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="89011" stop="90679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89309" g_stop="89747" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89748" i_stop="89988" i_length="241">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89989" g_stop="90379" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="830" r_length="391" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E737259" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89309" e_stop="89747"/>
          <exon e_start="89989" e_stop="90379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATATAGAAGAAAAATGGAATCTATAGGAGTACTAATGGCGTGTCCAATGTCATCATACTTAGAACAACAACTCGATAATCGATTCAACCTCATACGTTACTGGAACTTCTCCGATAAGAAACAATTCATCAACGACTACGCTCATTCAATACGTGCTGTTGTGGGAAACGCTGCTGCTGGTGCTGATGCAGAGCTTATCGAGGCGTTGCCTCAGCTAGAAATTGTGGCTAGTTTCAGTGTTGGTTTAGATAAGATTGATTTGAACAAGTGTAAAGAGAAGGGTATTAGAGTGACTAATACACCAGATGTGTTAACTGAGGATGTTGCTGATCTTGCTATTGGATTAATATTGGCTGTGCTAAGGAGGATTTGCGAGTCTGATCGATATGTGAAGAAGGGATTGTGGAAGGCTGGTGATTTCGCGTTGACTTCTAAGGTTAGTGTTCTTTTTGTTTCATTTTATATGACGATATTTATGACAGATCGAGCTTGAGATATTAGTTTGATTGGTGGAAGAAGATGTTTAAGCAATAGATGATAGGTTACATTGACAAATGACAATTATGGGTTTTAAACATATAATTATGCTCCGAGTCAAAAGTATTGGGCTCAAATGAACCAGATACCGGCTACACTTACACCAACATTTACCTGATTCATCGTTTTTTCTTTTGCAGTTTAGTGGCAAAAGAGTTGGTATCATAGGATTAGGGAGGATTGGCTTAGCAATTGCAAAGAGAGCAGAGGCTTTTGATTGTCCAATCAGTTACTACGCGCGATCAGAAAAGACAAATACGAATTACAAATACTATCCAACTGTAGTAGAACTCGCTACCAATTGTGAGATCCTGGTTGTGGCGTGTGCACTAACTCCTGAGACTCGTTACGTTGTCAACCGCGAAGTGATTGATGCATTAGGTGCAAAAGGGATTCTTATCAACATTGGAAGGGGACCTCATGTTGATGAAAAAGAGATGGTATCTTCTCTTCTTGATGGTCGATTAGGGGGCGCTGGCCTTGATGTGTTTGAGAATGAACCTGAAGTCCCTGATAATCTGTTCGGCCTTG</genome_strand>
        <mrna_strand>CTCATATAGAAGAAAAATGGAATCTATAGGAGTACTAATGGCGTGTCCAATGTCATCATACTTAGAACAACAACTCGATAATCGATTCAACCTCATACGTTACTGGAACTTCTCCGATAAGAAACAATTCATCAACGACTACGCTCATTCAATACGTGCTGTTGTGGGAAACGCTGCTGCTGGTGCTGATGCAGAGCTTATCGAGGCGTTGCCTCAGCTAGAAATTGTGGCTAGTTTCAGTGTTGGTTTAGATAAGATTGATTTGAACAAGTGTAAAGAGAAGGGTATTAGAGTGACTAATACACCAGATGTGTTAACTGAGGATGTTGCTGATCTTGCTATTGGATTAATGTTGGCTGTGCTAAGGAGGATTTGCGAGTCTGATCGATATGTTAAGAAGGGATTGTGGAAGGCTGGTGATTTCGCGTTGACTTCTAAG.................................................................................................................................................................................................................................................TTTAGTGGCAAAAGAGTTGGTATCATAGGATTAGGGAGGATTGGCTTAGCAATTGCAAAGAGAGCAGAGGCTTTTGATTGTCCAATCAGTTACTACGCGCGATCAGAAAAGACAAATACGAATTACAAATACTATCCAACTGTAGTAGAACTCGCTACCAATTGTGAGATCCTGGTTGTGGCGTGTGCACTAACTCCTGAGACTCGTTACATTGTCAACCGCGAAGTGATTGATGCATTAGGTGCAAAAGGGATTCTTATCAACATTGGAAGGGGACCTCATGTTGATGAAAAAGAGATGGTATCTTCTCTTCTTGATGGTCGATTANGAGGCGCTGGCCTTGATGTGTTTGAGAATGAACCTGAAGTCCCTGATAATCTGTTCGGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546563" ref_strand="-" ref_description="SGN-E546563 [TUS-69-P22](-)">
      <seq>cgggcccccctcgagtttttttttttttttttttcaccaaacgtaagaaagagttatcaatcttaccgttaaacaatagtcctctattgctcaacaagcctaagtagaaaaacaatctacccactaagctatcccacttggacaacctagacttttacacaacacaccaattcctttatagatttagcagtggtttacaatttaacaacaagagaataaattcctaaacaactatacgacaagctcaagatgttgctgttgttcttggaatgattctaccttttgtgtagcctttgcaagtgttcttgaaaagtttttatcaagttgcaaaaactaaaaaacaaatgttttggaaagtgccttttatgtgggcaagtcactttcctaaactcctttgccatttgctgaaaaggtcacacttttctgacgccatcgggaagtgtgcacctactttctgtaccatctccagctggcagtcgactgactcattttcatgagagcctggtacctctactaggtccctggttttgtttcttctgcaatacctcaaacaagacacctgcaatacacaattagagaacctgatacctttatgaggtcccattgtttgtcaaatcatcaaaactacaaataacatttacagttaaagtaacatttgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="145111" stop="97851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99316" g_stop="99287" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.433"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99286" i_stop="98772" i_length="515">
            <donor d_prob="0.737" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98771" g_stop="98153" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="646" r_length="616" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-E546563" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546563" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99316" e_stop="99287"/>
          <exon e_start="98771" e_stop="98153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACAGACCAGAAGAGTTTTAGCTTTGAAGCCCTTTTCAATCTTTTTCCTGTCAGCATCATCATATTTCTGCCTGGGCTTTGGAACAGTGATGGTCTTTTCTCCATCCTTTACTTCCATCATTGGAACAAAGGGTCCATCTAGTATAATATCCCATAACTCGCTATCTTCAGCCATGAGATAATCGTGCATTCTAACTTTCCACCAACTGTAGAAATGTCCATTGAAACGAGGAGGTCTGTGTGATGACTGACCTTCTTCGAGGTTAAGTGGAGCTGCCATTCTAGAACAAAATCACTTCCTTGGTGTTAACCAAATAGGTAGTGCCTGCTCTGATACCACTTGATAGAATGTATGACTTCACTTACTAAGTAATGGACCAGGTCCGTTACTTTACTTCAGAAAATTATCAGAAAGTTAAATGCAGTAAAATCAACACAATGATTTTACGTGGAAACCTCCTTGCTTAAGGGAGTAAAACCACGACCTGTCTCACAGGGTTTTCAATCATTTTCACTAATCTTCAAAAGCAAAAGCGAAACAAGATTACACCAAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAACAGTCCTCTATTGCTCAACAAGCCTAAGTAGAAAAACAATCTACCCACTAAGCTATCCTAACTGGACAACTTAGACTTTATCACAACACACCAATTCCTTTATAGTTTTAGGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTCCTAAACAACTAGACGAAAAGCTCCAGATGTTGCTGTTGTCCTTGGAATAATTCTGCCTTTGCTTTGTGTAGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACT--ACAACAAATGTTTAGGAAAATGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGCTGGAAAGGTCACACTTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGTACCGTCTACAGCTGGCAGTCGACTGGCTCATCATCATGAGAGTCTGGTACCTCTACTAGGTCCCTGGGTTTGTTTCATCTGCAATACTTCAAACAAGACACCTGCAATACTCAAGTAGAAAACCCTGTACCTTTATGAGGTCCCTAAGTTTGTCAAATCATCAAAACTACAAATAACAATACCATAAA</genome_strand>
        <mrna_strand>CGGGCCCCCCTCGAGTTTTTTTTTTTTTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCACC-AAACGTAAGAAAGAGTTATCAATCTTACCGTTAAACAATAGTCCTCTATTGCTCAACAAGCCTAAGTAGAAAAACAATCTACCCACTAAGCTATCCCACTTGGACAACCTAGACTTTTACACAACACACCAATTCCTTTATAGATTTAGCAGTGGTTTACAATTTAACAACAAGAGAATAAATTCCTAAACAACTATACGACAAGCTCAAGATGTTGCTGTTGTTCTTGGAATGATTCTACC--T--TTTGTGTAGCCTTTGCAAGTGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTAAAAAACAAATGTTTTGGAAAGTGCCTTTTATGTGGGCAAGTCACTTTCCTAAACTCCTTTGCCATTTGCTGAAAAGGTCACACTTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGTACCATCTCCAGCTGGCAGTCGACTGACTCATTTTCATGAGAGCCTGGTACCTCTACTAGGTCCCTGGTTTTGTTTCTTCTGCAATACCTCAAACAAGACACCTGCAATACACAATTAGAGAACCTGATACCTTTATGAGGTCCCATTGTTTGTCAAATCATCAAAACTACAAATAACATTTACAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203362" ref_strand="+" ref_description="SGN-E203362 [cLEB-3-P3](-)">
      <seq>gctggagatggtgcagaaagtaggtgcacacttcccgatggcgtcagaaagtgacccttccaaccaatggcaaagaagtttaggaaagtgacttgcccatataaaaggcactttcctaaacacttttcttcagtttttgcaacttgataaaaacttttcaagaactcttgcaaaggctctacaaagtaaaggcagaattattccaagaacaacagcaatatcttgagcttttcgtctagttgtttaggaatatattctcttgttcttaaactgtaaaccattcctgaatctataaaggatttggtgtgttgtgttaaaagtctaggttgtccaggtgggatagcttagtgggtagattgttttctacttaggcttgttaagcaatagaggactattgcttaacggtaagattcataactctttcttacgtttggtgtaatcgtgttttacttttgcttttgaagattagtgaaaacgattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98029" stop="145108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107114" g_stop="107599" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107600" i_stop="109292" i_length="1693">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109293" g_stop="109309" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="501" r_length="17" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E203362" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107114" e_stop="107599"/>
          <exon e_start="109293" e_stop="109309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTAGACGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAAGTGTGACCTTTCCAGCCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCATTTTCCTAAACA-TTTGTTGTAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTACACAAAGCAAAGGCAGAATTATTCCAAGGACAACAGCAACATCTGGAGCTTTTCGTCTAGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGATGTGTTGTGAT-AAAGTCTAAGTTGTCCAGTTAGGATAGCTTAGTGGGTAGATTGTTTTCTACTTAGGCTTGTTGAGCAATAGAGGACTGTTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTTGGTGTAATCGTGTTTCGCTTTTACTTTTGAAGATTAGTGAAAACGATTGAAAATCCTGTGAGACAGGTCGTGGTTTTACTCCCTTAAGCAAGGAGGTTTCCACGTAAAATCATTGTGTTAATTTTACTGCATTTAACTTTCTGATAATTTTCTGAAGTAAAGTAACGGACCTGGTCCATTACTTAGTAAGTGAAGGCATACATTCTATCAAGTATCATTCGGACGAATACGAAATCAAATCTAAATACAAATTATTTGGTATACAAAGTGATATTGGAAATAAACAAAATAAAATACACATGTAAGATTGATGAATACATATATCATGAATACATGAGTTCTGAATATTGGACAATTTCTTAAATAGAGAAACTATCTTGAATATGTTAGCAACTTTAAAGAAACTATCTTAATAAATAATGTTCTATCACTCTTATAATATGTAAAAAGTTAAAATTAAGTTGAACCCGCATAAAATCGGATAGACTCGCAACCCACCCCACTCCTCATTAGTTTTTCAAAAGAAAAAATTAGCAAACTAGTCAGAATCCTTAACTTAATTAGTAAAAATATCTACACTTTAAAATAATTATTGAATGTCAAAATGTCAATATTTTAGAAAATAATTTGTATTCAAATTTTATTTTTTAAAACAGTCCAACTTTGAATCAAATTCTACATCCATTACCTATTTACACTTCTTCCTATGCTTTAGTACCATTAAATTTATTTTTCATCTTTCACTTTTCACTTTTTTCTTTTATCAAAATTTCACCATTATTCTCTCTCATTGTTGAAGAAGAATTAAATATTCAAATTTAACAATTTGTTCAGATCTATCAATTAATCAAGAGATCTCTCAATTGATAAAGGTATTTTTGAATTCATCATTTATTTTTCGAGATTTGTTTTCAAAATCATACATAATGTTCAATTTTTTGGGTTGTATGTATTGAGGATTTTTCATCATTTTTTTTTAATTTTTATGTGAGTTTGTTAACATATTCATCAAATATTTATGTACTTTAGATTTTTAGAGTTTAAAATAATTTTTGTCGATCTTTTTTTATGATATGTTTTTATATTTCAAATTTAGTAGAATCCACATAAGCATTTAGGTATTGAGTTATTTTGTAAAAGTATTTGAAAGTATTTTGAATGTTCTGTAGTTTGTAGTCAAATTTATTTTTACAAAGTGAAAATCTTAATACAAATCTATATTTGATTATTTAAAATTGTGAATGAATACGAACCAAAGATAAACTAGTTGGTACAAACATATAATGAGCAAAATAAAATACAAAACTATTGGACTAATGCAACACATAATGAATACATAAATAAACTATATTTTGGCTATTTATAGTTGAGAATGAATACGAAATCAAAATATAAATACAAAACTTTATGGTATACATTAGGACGACTACGAAATCAAATTTAAATACAAACTTTATGGTATACATTAGGACGAATACGAAATCAAATCTAAATCCAAATTATTTGGTATACAAAGTGATATTGGAAATAAACAAAATAAAAATACATATGTAAGATGGATGACTACATATATCATGAATACATGAGTTCTGAATATTGGAAAAATTCTTAAATAGAGATACAAATAACTTCATAAAATTTCAGACATTTTCAAAGATAAATTATAATTTCATAACGTCAAAATAATGCCTTAGTAGAATAAAATGGTTCAAATATGATAATGTATGGTAAATTAACGTGTTTAGAAACAAAAAAAATAAGA</genome_strand>
        <mrna_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAG-AAA--GTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTTTTCTTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTCTACAAAGTAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTTGAGCTTTTCGTCTAGTTGTTTAGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGATTTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACGGTAAGATTCATAACTCTTTCTTACG-TTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205773" ref_strand="+" ref_description="SGN-E205773 [cLEC-20-A3]">
      <seq>aacaattagttaatttaaatccattagccactcttgctcatcttttaagtatcttgttggattttatttgccctgatttcttaccataaataggttttccttttaggaaaaggttttgaattgactaatccttttcttgtaggaaaaggtttaggactctataaatagatgaatattccttttaacttaatcagcattcacaatgtagtcttacaggctttgagagttttggttagagggagaatctgtgggtcacaagcttgatatgttatcacttgtgtgaacctaccatgtattctgagtgaattggttgaagctgtttctctctgtattttgtactcttatatttatagtggattgctcatctactttgtggacgtaggttgattgaccgaaccacgttaaatctttgtgtcttttgatatatttctcgatggcttcttactcgtggtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="116711" stop="117723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117011" g_stop="117423" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="456" r_length="413" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-E205773" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117011" e_stop="117423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGCATGATGTTGGGTTTTATTTGCCCTGATTTCTTACCATAAATAGGTTTTCCTTTTAGGAAAAGGTTTTGAATTGACTAATCCTTTTTTGGTAGGAAAAGGTTTAGGACTCTATAAATAGAGGCATGTTCCTTCTAATTTAATCAGCATTCACAATGTAGTCTTAAGGGCTTTGAGAGTTTTGGTTAGAGGGAGAATGTGTGAGTCACAAGTTTGATACGTTATCAATTGTGTGAACCTCCCATGTATTCCGAATGAATTGGTTGAGGTTGTTTCTCTCTGTATTTTGTACTCTCATATTTATAGTGGATTGCTCATCTCCTTTGTGGACGTAGGTCGATTGACCGAACCACGTTAAATCTTTGTGTCTTTTGGTATATTTCTCGTTGTCTTCTTACTCGTGGTCTTT</genome_strand>
        <mrna_strand>TTTAAGTATCTTGTTGGATTTTATTTGCCCTGATTTCTTACCATAAATAGGTTTTCCTTTTAGGAAAAGGTTTTGAATTGACTAATCCTTTTCTTGTAGGAAAAGGTTTAGGACTCTATAAATAGATGAATATTCCTTTTAACTTAATCAGCATTCACAATGTAGTCTTACAGGCTTTGAGAGTTTTGGTTAGAGGGAGAATCTGTGGGTCACAAGCTTGATATGTTATCACTTGTGTGAACCTACCATGTATTCTGAGTGAATTGGTTGAAGCTGTTTCTCTCTGTATTTTGTACTCTTATATTTATAGTGGATTGCTCATCTACTTTGTGGACGTAGGTTGATTGACCGAACCACGTTAAATCTTTGTGTCTTTTGATATATTTCTCGATGGCTTCTTACTCGTGGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>113</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3719" PGL_stop="10487"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3719" e_stop="4090"/>
            <exon e_start="4459" e_stop="4628"/>
            <exon e_start="4895" e_stop="5068"/>
            <exon e_start="5364" e_stop="5547"/>
            <exon e_start="5661" e_stop="5749"/>
            <exon e_start="6280" e_stop="6349"/>
            <exon e_start="6482" e_stop="6534"/>
            <exon e_start="6629" e_stop="6736"/>
            <exon e_start="7332" e_stop="7430"/>
            <exon e_start="7621" e_stop="7713"/>
            <exon e_start="7802" e_stop="7879"/>
            <exon e_start="8041" e_stop="8145"/>
            <exon e_start="8443" e_stop="8533"/>
            <exon e_start="9226" e_stop="9299"/>
            <exon e_start="9438" e_stop="9617"/>
            <exon e_start="9902" e_stop="9955"/>
            <exon e_start="10120" e_stop="10487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.845" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.724" acc_prob="0.737" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.689" acc_prob="0.353" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.838" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.981"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="3719" e_stop="4090" e_length="372"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="4091" i_stop="4458" i_length="368"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4459" e_stop="4628" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="4629" i_stop="4894" i_length="266"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4895" e_stop="5068" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.988">
            <gDNA_intron_boundary i_start="5069" i_stop="5363" i_length="295"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5364" e_stop="5547" e_length="184"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.944">
            <gDNA_intron_boundary i_start="5548" i_stop="5660" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5661" e_stop="5749" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.845" acc_prob="0.981">
            <gDNA_intron_boundary i_start="5750" i_stop="6279" i_length="530"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6280" e_stop="6349" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6350" i_stop="6481" i_length="132"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="6482" e_stop="6534" e_length="53"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.967">
            <gDNA_intron_boundary i_start="6535" i_stop="6628" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="6629" e_stop="6736" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.828" acc_prob="0.989">
            <gDNA_intron_boundary i_start="6737" i_stop="7331" i_length="595"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="7332" e_stop="7430" e_length="99"/>
          </exon>
          <intron i_serial="9" don_prob="0.980" acc_prob="0.930">
            <gDNA_intron_boundary i_start="7431" i_stop="7620" i_length="190"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="7621" e_stop="7713" e_length="93"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="7714" i_stop="7801" i_length="88"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="7802" e_stop="7879" e_length="78"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7880" i_stop="8040" i_length="161"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="8041" e_stop="8145" e_length="105"/>
          </exon>
          <intron i_serial="12" don_prob="0.724" acc_prob="0.737">
            <gDNA_intron_boundary i_start="8146" i_stop="8442" i_length="297"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="8443" e_stop="8533" e_length="91"/>
          </exon>
          <intron i_serial="13" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8534" i_stop="9225" i_length="692"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="9226" e_stop="9299" e_length="74"/>
          </exon>
          <intron i_serial="14" don_prob="0.689" acc_prob="0.353">
            <gDNA_intron_boundary i_start="9300" i_stop="9437" i_length="138"/>
          </intron>
          <exon e_serial="15" e_score="0.994">
            <gDNA_exon_boundary e_start="9438" e_stop="9617" e_length="180"/>
          </exon>
          <intron i_serial="15" don_prob="0.959" acc_prob="0.838">
            <gDNA_intron_boundary i_start="9618" i_stop="9901" i_length="284"/>
          </intron>
          <exon e_serial="16" e_score="0.981">
            <gDNA_exon_boundary e_start="9902" e_stop="9955" e_length="54"/>
          </exon>
          <intron i_serial="16" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9956" i_stop="10119" i_length="164"/>
          </intron>
          <exon e_serial="17" e_score="0.967">
            <gDNA_exon_boundary e_start="10120" e_stop="10487" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3719" stop="4090"/>
              <exon start="4459" stop="4487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3928" stop="4090"/>
              <exon start="4459" stop="4628"/>
              <exon start="4895" stop="5068"/>
              <exon start="5364" stop="5547"/>
              <exon start="5661" stop="5749"/>
              <exon start="6280" stop="6349"/>
              <exon start="6482" stop="6534"/>
              <exon start="6629" stop="6736"/>
              <exon start="7332" stop="7430"/>
              <exon start="7621" stop="7713"/>
              <exon start="7802" stop="7879"/>
              <exon start="8041" stop="8145"/>
              <exon start="8443" stop="8533"/>
              <exon start="9226" stop="9299"/>
              <exon start="9438" stop="9617"/>
              <exon start="9902" stop="9955"/>
              <exon start="10120" stop="10487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3973" stop="4090"/>
              <exon start="4459" stop="4628"/>
              <exon start="4895" stop="5068"/>
              <exon start="5364" stop="5497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3978" stop="4090"/>
              <exon start="4459" stop="4628"/>
              <exon start="4895" stop="5068"/>
              <exon start="5364" stop="5547"/>
              <exon start="5661" stop="5672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4068" stop="4090"/>
              <exon start="4459" stop="4628"/>
              <exon start="4895" stop="5068"/>
              <exon start="5364" stop="5547"/>
              <exon start="5661" stop="5689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4069" stop="4090"/>
              <exon start="4459" stop="4628"/>
              <exon start="4895" stop="5068"/>
              <exon start="5364" stop="5387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4459" stop="4628"/>
              <exon start="4895" stop="5068"/>
              <exon start="5364" stop="5487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4459" stop="4628"/>
              <exon start="4895" stop="5068"/>
              <exon start="5364" stop="5413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4482" stop="4628"/>
              <exon start="4895" stop="5068"/>
              <exon start="5364" stop="5547"/>
              <exon start="5661" stop="5701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4598" stop="4628"/>
              <exon start="4895" stop="5068"/>
              <exon start="5364" stop="5547"/>
              <exon start="5661" stop="5749"/>
              <exon start="6280" stop="6349"/>
              <exon start="6482" stop="6533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4598" stop="4628"/>
              <exon start="4895" stop="5068"/>
              <exon start="5364" stop="5547"/>
              <exon start="5661" stop="5749"/>
              <exon start="6280" stop="6349"/>
              <exon start="6482" stop="6510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4895" stop="5068"/>
              <exon start="5364" stop="5479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5691" stop="5749"/>
              <exon start="6280" stop="6349"/>
              <exon start="6482" stop="6534"/>
              <exon start="6629" stop="6736"/>
              <exon start="7332" stop="7430"/>
              <exon start="7621" stop="7713"/>
              <exon start="7802" stop="7879"/>
              <exon start="8041" stop="8145"/>
              <exon start="8443" stop="8533"/>
              <exon start="9226" stop="9299"/>
              <exon start="9438" stop="9477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6304" stop="6349"/>
              <exon start="6482" stop="6534"/>
              <exon start="6629" stop="6736"/>
              <exon start="7332" stop="7430"/>
              <exon start="7621" stop="7713"/>
              <exon start="7802" stop="7879"/>
              <exon start="8041" stop="8145"/>
              <exon start="8443" stop="8499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6683" stop="6736"/>
              <exon start="7332" stop="7430"/>
              <exon start="7621" stop="7713"/>
              <exon start="7802" stop="7879"/>
              <exon start="8041" stop="8145"/>
              <exon start="8443" stop="8533"/>
              <exon start="9226" stop="9299"/>
              <exon start="9438" stop="9572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7333" stop="7430"/>
              <exon start="7621" stop="7713"/>
              <exon start="7802" stop="7879"/>
              <exon start="8041" stop="8145"/>
              <exon start="8443" stop="8533"/>
              <exon start="9226" stop="9299"/>
              <exon start="9438" stop="9453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7414" stop="7430"/>
              <exon start="7621" stop="7713"/>
              <exon start="7802" stop="7879"/>
              <exon start="8041" stop="8145"/>
              <exon start="8443" stop="8533"/>
              <exon start="9226" stop="9266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7631" stop="7713"/>
              <exon start="7802" stop="7879"/>
              <exon start="8041" stop="8145"/>
              <exon start="8443" stop="8452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280923" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7666" stop="7713"/>
              <exon start="7802" stop="7879"/>
              <exon start="8041" stop="8145"/>
              <exon start="8443" stop="8533"/>
              <exon start="9226" stop="9299"/>
              <exon start="9438" stop="9552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8103" stop="8145"/>
              <exon start="8443" stop="8533"/>
              <exon start="9226" stop="9299"/>
              <exon start="9438" stop="9617"/>
              <exon start="9902" stop="9955"/>
              <exon start="10120" stop="10168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243759" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACCTGTGGCTAACCCAATCGGAAACCGACGCCGCCGATCCCGCCGGCGAGACCAACCCCCCAACCATAGACGTATTTGAACTATTTGGTTATTAATGAAGAAACCAAAAATTTCAACGAAGCCACATTTACTATGTCACGTAACATACAGTTGTGGCAACCAAAGCTGTTGGGTCGCCATAAATTGACATTTCTTGTTTTTTCTTTATAAAGAAATACTCCTCACCTAATAGTATGAGCACATTGAAAATTTTCAACTACTTTCTCAGTTCTAAGGCCACACCTCTGCACTCTTTATATATTCAGTATCATTTTTCGTGTCAAAGATATCATAGCTTTATCTCCTCGCAACTTCGCCTCTTATCCTCCG : CTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACC : GACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCG : GACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATG : GCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGAGTCTTAGCACAG : GTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATC : ATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCACG : GTCGACTTCGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGGACTATAACAGATAATGCCATTACGGTGTTTACTGGA : GTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATG : ATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAG : TTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAG : GCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAG : GTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGAC : GTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGGAAATTGAAGCAGTTCTGTTGGAG : CATCAAGCTATATTAGAGTGCTGTGTTTTAGGCTTGCCTGACAAAGACTATGGCGAAGTGGTATGTGCAATAGTTGTGCCTGAGGCTGAAGTTAAAAGAAGACGAGATGAGGAGCTAAAGCCTGCACTAACCTTGCACGAACTTTCTGATTGGGCGAAGGAGAAGCTTGCCCCATACAAG : ATACCAACTCGTCTGTTTCTGTGGGAATCTCTGCCTCGAAATGCGATGGGAAAG : GTAAACAAGAAAGAGCTAAAAAGGAAGCTGACTGAAGATCCCAAATGAGTCAGAAGATGGAGCATCAGAAAGTAAAATAATGCTTTAAGGTGTCACTCTATGTTCTTTTACACAAAAAAGGTCTTAAAAGAATATAAGTCCAGACAGTGACTGAAGTGAAAGTGCAATTAGTATATTAAATCTAGGAATTCTAATGAGAATTGAATTTAGAAAACATGTTAAGAGTTGATAAATGAATATCCAAGATAGGACAACTGAGCCCTACTAATTCTACTTGTGATTTGGAAGGATGTTGTCTTGTTGGACCTGAATATTGATTTTCTTCTGCTATCCCATTTCTATAATTGTAAAAAGTTATGAAATTTACT</gDNA_template>
            <first_frame> S  T  C  G  *  P  N  R  K  P  T  P  P  I  P  P  A  R  P  T  P  Q  P  *  T  Y  L  N  Y  L  V  I  N  E  E  T  K  N  F  N  E  A  T  F  T  M  S  R  N  I  Q  L  W  Q  P  K  L  L  G  R  H  K  L  T  F  L  V  F  S  L  *  R  N  T  P  H  L  I  V  *  A  H  *  K  F  S  T  T  F  S  V  L  R  P  H  L  C  T  L  Y  I  F  S  I  I  F  R  V  K  D  I  I  A  L  S  P  R  N  F  A  S  Y  P  P  :  L  Q  V  V  *  A  I  W  S  W  S  R  K  L  P  A  R  D  L  N  R  R  R  I  L  R  *  E  L  M  K  R  A  T  V  T  C  S  *  F  H  L  Q  G  E  F  Q  V  C  *  A  S  *  I  L  K  P :   T  K  A  S  K  K  M  N  I  T  K  E  Q  E  *  G  L  C  P  N  L  L  L  S  S  L  L  E  Y  *  E  P  G  L  V  E  V  V  Q  F  L  L  L  *  A  I  L  R  V  N  C  Y  M  *  *  M  T  R :   T  S  P  *  F  *  V  L  K  T  T  K  N  L  *  M  Q  L  Q  Q  K  L  V  L  S  C  L  S  F  L  Q  F  L  M  C  I  H  Q  Q  N  M  T  N  Q  K  T  W  F  L  T  V  N  K  I  C  *  R  S  I  L  M  :  A  R  T  L  L  L  S  C  T  P  A  A  Q  Q  G  N  Q  K  E  L  C  T  H  T  M  E  S  *  H  R :   S  K  C  *  L  M  H  G  N  T  R  P  R  I  N  F  C  I  V  Y  H  S  I  :  M  C  M  D  F  S  M  L  C  L  P  L  F  M  Q  V  P  R :   S  T  S  C  Q  N  S  V  *  G  E  F  G  R  D  G  V  N  H  I  L  Q  M  G  L  *  Q  I  M  P  L  R  C  L  L  E :   F  Q  L  C  M  H  D  *  Y  K  V  M  K  Q  W  I  Q  N  *  K  Q  L  L  L  Q  Q  Q  G  T  C  A  L  * :   *  V  A  P  L  H  F  L  C  P  S  C  S  S  G  K  P  L  L  D  T  G  Y  W  N  V  M  A  *  L  S :   L  *  W  Q  S  L  I  P  *  T  A  S  A  K  E  V  L  L  A  S  H  F  Q  V  C  R :   P  R  F  F  W  T  M  R  V  A  M  T  K  L  E  L  G  S  S  A  L  R  A  H  H  C  S  K  N  T  G  N  Y  L  R :   *  P  S  S  H  L  L  M  M  D  I  S  R  L  E  I  L  L  L  L  T  K  R  G  I  T  S  F  *  D  :  V  Q  M  L  I  L  *  S  L  V  D  T  N  Y  Q  R  W  K  L  K  Q  F  C  W  S :   I  K  L  Y  *  S  A  V  F  *  A  C  L  T  K  T  M  A  K  W  Y  V  Q  *  L  C  L  R  L  K  L  K  E  D  E  M  R  S  *  S  L  H  *  P  C  T  N  F  L  I  G  R  R  R  S  L  P  H  T  R :   Y  Q  L  V  C  F  C  G  N  L  C  L  E  M  R  W  E  R :   *  T  R  K  S  *  K  G  S  *  L  K  I  P  N  E  S  E  D  G  A  S  E  S  K  I  M  L  *  G  V  T  L  C  S  F  T  Q  K  R  S  *  K  N  I  S  P  D  S  D  *  S  E  S  A  I  S  I  L  N  L  G  I  L  M  R  I  E  F  R  K  H  V  K  S  *  *  M  N  I  Q  D  R  T  T  E  P  Y  *  F  Y  L  *  F  G  R  M  L  S  C  W  T  *  I  L  I  F  F  C  Y  P  I  S  I  I  V  K  S  Y  E  I  Y  </first_frame>
            <second_frame>  Q  P  V  A  N  P  I  G  N  R  R  R  R  S  R  R  R  D  Q  P  P  N  H  R  R  I  *  T  I  W  L  L  M  K  K  P  K  I  S  T  K  P  H  L  L  C  H  V  T  Y  S  C  G  N  Q  S  C  W  V  A  I  N  *  H  F  L  F  F  L  Y  K  E  I  L  L  T  *  *  Y  E  H  I  E  N  F  Q  L  L  S  Q  F  *  G  H  T  S  A  L  F  I  Y  S  V  S  F  F  V  S  K  I  S  *  L  Y  L  L  A  T  S  P  L  I  L  R :   Y  K  *  Y  K  L  Y  G  A  G  Q  G  S  C  Q  Q  G  T  *  I  A  E  E  Y  C  D  K  S  *  *  K  E  L  Q  L  P  A  V  D  F  I  C  K  E  N  F  K  F  V  K  Q  A  R  S  *  N   : R  Q  R  H  Q  R  K  *  T  S  Q  R  S  K  S  R  D  C  V  Q  T  F  C  *  V  R  C  W  N  T  R  N  L  A  *  W  R  L  C  S  S  S  C  S  E  L  S  *  E  *  T  A  T  C  D  E  *  L   : G  H  L  H  N  F  E  Y  *  R  P  P  R  T  Y  E  C  N  C  S  K  N  W  C  S  V  V  S  H  S  F  N  S  *  C  A  F  I  N  K  T  *  P  I  K  R  H  G  F  *  R  S  T  R  S  A  R  D  Q  F  L  W :   R  E  P  C  F  Y  L  V  H  Q  R  H  N  R  E  T  K  R  S  C  A  H  T  Q  W  S  L  S  T   : G  P  N  V  S  *  C  M  G  I  H  A  Q  G  S  I  S  A  L  S  T  T  P  S :   C  A  W  T  F  Q  C  F  A  C  P  S  L  C  R  F  H   : G  R  L  R  A  K  I  Q  C  E  G  N  L  A  E  M  A  *  I  I  S  Y  R  W  D  Y  N  R  *  C  H  Y  G  V  Y  W   : S  S  N  Y  V  C  T  I  D  T  R  L  *  S  N  G  S  R  T  K  N  S  F  C  F  S  S  K  A  L  A  P  Y   : D  E  W  L  L  C  T  S  S  A  R  H  A  A  V  G  N  H  Y  W  T  P  V  I  G  T  L  W  H  D  *   : V  C  D  G  N  L  *  S  H  K  R  Q  A  Q  R  R  Y  C  W  Q  A  I  S  R  C  A   : G  Q  D  S  F  G  R  C  E  *  Q  *  P  N  W  S  W  G  A  L  H  *  E  P  I  T  V  Q  R  I  L  E  I  T  *   : G  N  Q  A  V  I  Y  *  *  W  I  F  Q  D  W  R  Y  C  Y  C  *  R  R  G  V  L  H  H  S  R  T :   Y  K  C  *  Y  Y  E  V  W  W  I  Q  I  I  S  V  G  N  *  S  S  S  V  G   : A  S  S  Y  I  R  V  L  C  F  R  L  A  *  Q  R  L  W  R  S  G  M  C  N  S  C  A  *  G  *  S  *  K  K  T  R  *  G  A  K  A  C  T  N  L  A  R  T  F  *  L  G  E  G  E  A  C  P  I  Q   : D  T  N  S  S  V  S  V  G  I  S  A  S  K  C  D  G  K   : G  K  Q  E  R  A  K  K  E  A  D  *  R  S  Q  M  S  Q  K  M  E  H  Q  K  V  K  *  C  F  K  V  S  L  Y  V  L  L  H  K  K  G  L  K  R  I  *  V  Q  T  V  T  E  V  K  V  Q  L  V  Y  *  I  *  E  F  *  *  E  L  N  L  E  N  M  L  R  V  D  K  *  I  S  K  I  G  Q  L  S  P  T  N  S  T  C  D  L  E  G  C  C  L  V  G  P  E  Y  *  F  S  S  A  I  P  F  L  *  L  *  K  V  M  K  F  T </second_frame>
            <third_frame>   N  L  W  L  T  Q  S  E  T  D  A  A  D  P  A  G  E  T  N  P  P  T  I  D  V  F  E  L  F  G  Y  *  *  R  N  Q  K  F  Q  R  S  H  I  Y  Y  V  T  *  H  T  V  V  A  T  K  A  V  G  S  P  *  I  D  I  S  C  F  F  F  I  K  K  Y  S  S  P  N  S  M  S  T  L  K  I  F  N  Y  F  L  S  S  K  A  T  P  L  H  S  L  Y  I  Q  Y  H  F  S  C  Q  R  Y  H  S  F  I  S  S  Q  L  R  L  L  S  S   : A  T  S  S  I  S  Y  M  E  L  V  K  E  V  A  S  K  G  P  E  S  Q  K  N  I  A  I  R  A  D  E  K  S  Y  S  Y  L  Q  L  I  S  S  A  R  R  I  S  S  L  L  S  K  L  D  L  K  T  :  D  K  G  I  K  E  N  E  H  H  K  G  A  R  V  G  I  V  S  K  P  S  A  E  F  V  A  G  I  L  G  T  W  L  S  G  G  C  A  V  P  L  A  L  S  Y  P  E  S  E  L  L  H  V  M  N  D  S  :  D  I  S  I  I  L  S  T  E  D  H  Q  E  L  M  N  A  I  A  A  K  T  G  A  Q  L  S  L  I  P  S  I  P  D  V  H  S  S  T  K  H  D  Q  S  K  D  M  V  S  D  G  Q  Q  D  L  L  E  I  N  S  Y   : G  E  N  P  A  F  I  L  Y  T  S  G  T  T  G  K  P  K  G  V  V  H  T  H  N  G  V  L  A  Q  :  V  Q  M  L  A  N  A  W  E  Y  T  P  K  D  Q  F  L  H  C  L  P  L  H   : H  V  H  G  L  F  N  A  L  L  A  P  L  Y  A  G  S  T  :  V  D  F  V  P  K  F  S  V  R  G  I  W  Q  R  W  R  E  S  Y  P  T  D  G  T  I  T  D  N  A  I  T  V  F  T  G  :  V  P  T  M  Y  A  R  L  I  Q  G  Y  E  A  M  D  P  E  L  K  T  A  S  A  S  A  A  R  H  L  R  L  M  :  M  S  G  S  S  A  L  P  L  P  V  M  Q  Q  W  E  T  I  T  G  H  R  L  L  E  R  Y  G  M  T  E  :  F  V  M  A  I  S  N  P  I  N  G  K  R  K  G  G  T  V  G  K  P  F  P  G  V  Q  :  A  K  I  L  L  D  D  A  S  S  N  D  Q  T  G  V  G  E  L  C  I  K  S  P  S  L  F  K  E  Y  W  K  L  P  E  :  V  T  K  Q  S  F  T  D  D  G  Y  F  K  T  G  D  T  V  T  V  D  E  E  G  Y  Y  I  I  L  G   : R  T  N  A  D  I  M  K  F  G  G  Y  K  L  S  A  L  E  I  E  A  V  L  L  E  :  H  Q  A  I  L  E  C  C  V  L  G  L  P  D  K  D  Y  G  E  V  V  C  A  I  V  V  P  E  A  E  V  K  R  R  R  D  E  E  L  K  P  A  L  T  L  H  E  L  S  D  W  A  K  E  K  L  A  P  Y  K  :  I  P  T  R  L  F  L  W  E  S  L  P  R  N  A  M  G  K  :  V  N  K  K  E  L  K  R  K  L  T  E  D  P  K  *  V  R  R  W  S  I  R  K  *  N  N  A  L  R  C  H  S  M  F  F  Y  T  K  K  V  L  K  E  Y  K  S  R  Q  *  L  K  *  K  C  N  *  Y  I  K  S  R  N  S  N  E  N  *  I  *  K  T  C  *  E  L  I  N  E  Y  P  R  *  D  N  *  A  L  L  I  L  L  V  I  W  K  D  V  V  L  L  D  L  N  I  D  F  L  L  L  S  H  F  Y  N  C  K  K  L  *  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3904" stop="4090"/>
                    <exon start="4459" stop="4628"/>
                    <exon start="4895" stop="5068"/>
                    <exon start="5364" stop="5547"/>
                    <exon start="5661" stop="5749"/>
                    <exon start="6280" stop="6349"/>
                    <exon start="6482" stop="6534"/>
                    <exon start="6629" stop="6736"/>
                    <exon start="7332" stop="7430"/>
                    <exon start="7621" stop="7713"/>
                    <exon start="7802" stop="7879"/>
                    <exon start="8041" stop="8145"/>
                    <exon start="8443" stop="8533"/>
                    <exon start="9226" stop="9299"/>
                    <exon start="9438" stop="9617"/>
                    <exon start="9902" stop="9955"/>
                    <exon start="10120" stop="10167"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1854</number_coding_nucleotides>
                  <number_encoded_amino_acids>618</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDISCFFFIKKYSSPNSMSTLKIFNYFLSSKATPLHSLYIQYHFSCQRYHSFISSQLRLLSSATSSISYMELVKEVASKGPESQKNIAIRADEKSYSYLQLISSARRISSLLSKLDLKTDKGIKENEHHKGARVGIVSKPSAEFVAGILGTWLSGGCAVPLALSYPESELLHVMNDSDISIILSTEDHQELMNAIAAKTGAQLSLIPSIPDVHSSTKHDQSKDMVSDGQQDLLEINSYGENPAFILYTSGTTGKPKGVVHTHNGVLAQVQMLANAWEYTPKDQFLHCLPLHHVHGLFNALLAPLYAGSTVDFVPKFSVRGIWQRWRESYPTDGTITDNAITVFTGVPTMYARLIQGYEAMDPELKTASASAARHLRLMMSGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPINGKRKGGTVGKPFPGVQAKILLDDASSNDQTGVGELCIKSPSLFKEYWKLPEVTKQSFTDDGYFKTGDTVTVDEEGYYIILGRTNADIMKFGGYKLSALEIEAVLLEHQAILECCVLGLPDKDYGEVVCAIVVPEAEVKRRRDEELKPALTLHELSDWAKEKLAPYKIPTRLFLWESLPRNAMGKVNKKELKRKLTEDPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="5651" e_stop="5749"/>
            <exon e_start="6280" e_stop="6349"/>
            <exon e_start="6482" e_stop="6534"/>
            <exon e_start="6629" e_stop="6736"/>
            <exon e_start="7332" e_stop="7430"/>
            <exon e_start="7621" e_stop="7713"/>
            <exon e_start="7802" e_stop="7879"/>
            <exon e_start="8041" e_stop="8145"/>
            <exon e_start="8443" e_stop="8594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.845" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.724" acc_prob="0.737" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5651" e_stop="5749" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.845" acc_prob="0.981">
            <gDNA_intron_boundary i_start="5750" i_stop="6279" i_length="530"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6280" e_stop="6349" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6350" i_stop="6481" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6482" e_stop="6534" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.967">
            <gDNA_intron_boundary i_start="6535" i_stop="6628" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6629" e_stop="6736" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.828" acc_prob="0.989">
            <gDNA_intron_boundary i_start="6737" i_stop="7331" i_length="595"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7332" e_stop="7430" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.930">
            <gDNA_intron_boundary i_start="7431" i_stop="7620" i_length="190"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7621" e_stop="7713" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="7714" i_stop="7801" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="7802" e_stop="7879" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7880" i_stop="8040" i_length="161"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="8041" e_stop="8145" e_length="105"/>
          </exon>
          <intron i_serial="8" don_prob="0.724" acc_prob="0.737">
            <gDNA_intron_boundary i_start="8146" i_stop="8442" i_length="297"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="8443" e_stop="8594" e_length="152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5651" stop="5749"/>
              <exon start="6280" stop="6349"/>
              <exon start="6482" stop="6534"/>
              <exon start="6629" stop="6736"/>
              <exon start="7332" stop="7430"/>
              <exon start="7621" stop="7713"/>
              <exon start="7802" stop="7879"/>
              <exon start="8041" stop="8145"/>
              <exon start="8443" stop="8594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6304" stop="6349"/>
              <exon start="6482" stop="6534"/>
              <exon start="6629" stop="6736"/>
              <exon start="7332" stop="7430"/>
              <exon start="7621" stop="7713"/>
              <exon start="7802" stop="7879"/>
              <exon start="8041" stop="8145"/>
              <exon start="8443" stop="8499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7631" stop="7713"/>
              <exon start="7802" stop="7879"/>
              <exon start="8041" stop="8145"/>
              <exon start="8443" stop="8452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280923" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCTTTAAGGCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGAGTCTTAGCACAG : GTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATC : ATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCACG : GTCGACTTCGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGGACTATAACAGATAATGCCATTACGGTGTTTACTGGA : GTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATG : ATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAG : TTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAG : GCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAG : GTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGACGTAAGCATACTGTCTTCCAAATTTTTTTCTAGTTGTGCTATACCAATTTCATATGGTTTTC</gDNA_template>
            <first_frame> Y  L  *  G  E  N  P  A  F  I  L  Y  T  S  G  T  T  G  K  P  K  G  V  V  H  T  H  N  G  V  L  A  Q  :  V  Q  M  L  A  N  A  W  E  Y  T  P  K  D  Q  F  L  H  C  L  P  L  H   : H  V  H  G  L  F  N  A  L  L  A  P  L  Y  A  G  S  T  :  V  D  F  V  P  K  F  S  V  R  G  I  W  Q  R  W  R  E  S  Y  P  T  D  G  T  I  T  D  N  A  I  T  V  F  T  G  :  V  P  T  M  Y  A  R  L  I  Q  G  Y  E  A  M  D  P  E  L  K  T  A  S  A  S  A  A  R  H  L  R  L  M  :  M  S  G  S  S  A  L  P  L  P  V  M  Q  Q  W  E  T  I  T  G  H  R  L  L  E  R  Y  G  M  T  E  :  F  V  M  A  I  S  N  P  I  N  G  K  R  K  G  G  T  V  G  K  P  F  P  G  V  Q  :  A  K  I  L  L  D  D  A  S  S  N  D  Q  T  G  V  G  E  L  C  I  K  S  P  S  L  F  K  E  Y  W  K  L  P  E  :  V  T  K  Q  S  F  T  D  D  G  Y  F  K  T  G  D  T  V  T  V  D  E  E  G  Y  Y  I  I  L  G  R  K  H  T  V  F  Q  I  F  F  *  L  C  Y  T  N  F  I  W  F   </first_frame>
            <second_frame>  I  F  K  A  R  T  L  L  L  S  C  T  P  A  A  Q  Q  G  N  Q  K  E  L  C  T  H  T  M  E  S  *  H  R :   S  K  C  *  L  M  H  G  N  T  R  P  R  I  N  F  C  I  V  Y  H  S  I  :  M  C  M  D  F  S  M  L  C  L  P  L  F  M  Q  V  P  R :   S  T  S  C  Q  N  S  V  *  G  E  F  G  R  D  G  V  N  H  I  L  Q  M  G  L  *  Q  I  M  P  L  R  C  L  L  E :   F  Q  L  C  M  H  D  *  Y  K  V  M  K  Q  W  I  Q  N  *  K  Q  L  L  L  Q  Q  Q  G  T  C  A  L  * :   *  V  A  P  L  H  F  L  C  P  S  C  S  S  G  K  P  L  L  D  T  G  Y  W  N  V  M  A  *  L  S :   L  *  W  Q  S  L  I  P  *  T  A  S  A  K  E  V  L  L  A  S  H  F  Q  V  C  R :   P  R  F  F  W  T  M  R  V  A  M  T  K  L  E  L  G  S  S  A  L  R  A  H  H  C  S  K  N  T  G  N  Y  L  R :   *  P  S  S  H  L  L  M  M  D  I  S  R  L  E  I  L  L  L  L  T  K  R  G  I  T  S  F  *  D  V  S  I  L  S  S  K  F  F  S  S  C  A  I  P  I  S  Y  G  F  </second_frame>
            <third_frame>   S  L  R  R  E  P  C  F  Y  L  V  H  Q  R  H  N  R  E  T  K  R  S  C  A  H  T  Q  W  S  L  S  T   : G  P  N  V  S  *  C  M  G  I  H  A  Q  G  S  I  S  A  L  S  T  T  P  S :   C  A  W  T  F  Q  C  F  A  C  P  S  L  C  R  F  H   : G  R  L  R  A  K  I  Q  C  E  G  N  L  A  E  M  A  *  I  I  S  Y  R  W  D  Y  N  R  *  C  H  Y  G  V  Y  W   : S  S  N  Y  V  C  T  I  D  T  R  L  *  S  N  G  S  R  T  K  N  S  F  C  F  S  S  K  A  L  A  P  Y   : D  E  W  L  L  C  T  S  S  A  R  H  A  A  V  G  N  H  Y  W  T  P  V  I  G  T  L  W  H  D  *   : V  C  D  G  N  L  *  S  H  K  R  Q  A  Q  R  R  Y  C  W  Q  A  I  S  R  C  A   : G  Q  D  S  F  G  R  C  E  *  Q  *  P  N  W  S  W  G  A  L  H  *  E  P  I  T  V  Q  R  I  L  E  I  T  *   : G  N  Q  A  V  I  Y  *  *  W  I  F  Q  D  W  R  Y  C  Y  C  *  R  R  G  V  L  H  H  S  R  T  *  A  Y  C  L  P  N  F  F  L  V  V  L  Y  Q  F  H  M  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5660" stop="5749"/>
                    <exon start="6280" stop="6349"/>
                    <exon start="6482" stop="6534"/>
                    <exon start="6629" stop="6736"/>
                    <exon start="7332" stop="7430"/>
                    <exon start="7621" stop="7713"/>
                    <exon start="7802" stop="7879"/>
                    <exon start="8041" stop="8145"/>
                    <exon start="8443" stop="8565"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GENPAFILYTSGTTGKPKGVVHTHNGVLAQVQMLANAWEYTPKDQFLHCLPLHHVHGLFNALLAPLYAGSTVDFVPKFSVRGIWQRWRESYPTDGTITDNAITVFTGVPTMYARLIQGYEAMDPELKTASASAARHLRLMMSGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPINGKRKGGTVGKPFPGVQAKILLDDASSNDQTGVGELCIKSPSLFKEYWKLPEVTKQSFTDDGYFKTGDTVTVDEEGYYIILGRKHTVFQIFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="27827" PGL_stop="26948"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27827" e_stop="26948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="27827" e_stop="26948" e_length="880"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27827" stop="26948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702462" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTCTCCAATCTCTTGGCATTGTTCATCACACATCTTGCCCATATACTCCTGAACAAAATGGTGTTGCCGAACGCAAACACCGTCACCTCATTGAAACCGTTGTCACTCTTCTTCATGAGTCTCATCTCCCTGCACCTTTCTGGGTCGAGGCGTTGGCCACTGCCAACTATCTCATCAACCGCATGCCCACACCCTCCCTCTCTAACACATCTCCCTATGAATGTCTATACACACACCGTCCAGATTACACTCATCTTCGACCATTTGGTTGTCTTGCCTATCCTTGGCTACGCCCTCACACTCAACACAAACTTCAACCCCGGTCTACACCATGCATCTTTCTAGGCTACCATCCCACCATAAAAGGATACAAATGTTTTGAACCCATCTCTCAAAAAACATATGTCTCTCGTCATGTTCGTTTTATCGAGGAGGATTTTCCCTATCCCCGGTTAAGCTCTGTCAATGCCATGTCCAACCCACTTGGTCTTATTCCAATCTTTCCACCGAGCTCGCATGGCCTTGTACCGGCATCCATTACCCCATCCATCATACACACACCACCCAATCCCAACCCTCTCATCCCATCCGGATCACCCACCACCCCCAATCCACCCATCCCACCAACTTTCAATCCTCCTCACCAACAATCTCCACCAGCCGAAACAACCCCTCCTCCACCCCCACCCCCTTTACATCATATGCAAACCCGTTCCAAATTCGGCATTTTCAAGCCCAAAGTCTACACCACCACTTCACTTGCTCCCTCTCCCTCTGAACCTACTACCTACAAACAAGCATCTACCAACCCCCTTTGGTGTCAGGCTATGGATGATGAATACAGGTCTCTTATTAATCAGCATACTTGGGAATTGGT</gDNA_template>
            <first_frame> L  F  S  N  L  L  A  L  F  I  T  H  L  A  H  I  L  L  N  K  M  V  L  P  N  A  N  T  V  T  S  L  K  P  L  S  L  F  F  M  S  L  I  S  L  H  L  S  G  S  R  R  W  P  L  P  T  I  S  S  T  A  C  P  H  P  P  S  L  T  H  L  P  M  N  V  Y  T  H  T  V  Q  I  T  L  I  F  D  H  L  V  V  L  P  I  L  G  Y  A  L  T  L  N  T  N  F  N  P  G  L  H  H  A  S  F  *  A  T  I  P  P  *  K  D  T  N  V  L  N  P  S  L  K  K  H  M  S  L  V  M  F  V  L  S  R  R  I  F  P  I  P  G  *  A  L  S  M  P  C  P  T  H  L  V  L  F  Q  S  F  H  R  A  R  M  A  L  Y  R  H  P  L  P  H  P  S  Y  T  H  H  P  I  P  T  L  S  S  H  P  D  H  P  P  P  P  I  H  P  S  H  Q  L  S  I  L  L  T  N  N  L  H  Q  P  K  Q  P  L  L  H  P  H  P  L  Y  I  I  C  K  P  V  P  N  S  A  F  S  S  P  K  S  T  P  P  L  H  L  L  P  L  P  L  N  L  L  P  T  N  K  H  L  P  T  P  F  G  V  R  L  W  M  M  N  T  G  L  L  L  I  S  I  L  G  N  W  </first_frame>
            <second_frame>  F  S  P  I  S  W  H  C  S  S  H  I  L  P  I  Y  S  *  T  K  W  C  C  R  T  Q  T  P  S  P  H  *  N  R  C  H  S  S  S  *  V  S  S  P  C  T  F  L  G  R  G  V  G  H  C  Q  L  S  H  Q  P  H  A  H  T  L  P  L  *  H  I  S  L  *  M  S  I  H  T  P  S  R  L  H  S  S  S  T  I  W  L  S  C  L  S  L  A  T  P  S  H  S  T  Q  T  S  T  P  V  Y  T  M  H  L  S  R  L  P  S  H  H  K  R  I  Q  M  F  *  T  H  L  S  K  N  I  C  L  S  S  C  S  F  Y  R  G  G  F  S  L  S  P  V  K  L  C  Q  C  H  V  Q  P  T  W  S  Y  S  N  L  S  T  E  L  A  W  P  C  T  G  I  H  Y  P  I  H  H  T  H  T  T  Q  S  Q  P  S  H  P  I  R  I  T  H  H  P  Q  S  T  H  P  T  N  F  Q  S  S  S  P  T  I  S  T  S  R  N  N  P  S  S  T  P  T  P  F  T  S  Y  A  N  P  F  Q  I  R  H  F  Q  A  Q  S  L  H  H  H  F  T  C  S  L  S  L  *  T  Y  Y  L  Q  T  S  I  Y  Q  P  P  L  V  S  G  Y  G  *  *  I  Q  V  S  Y  *  S  A  Y  L  G  I  G </second_frame>
            <third_frame>   F  L  Q  S  L  G  I  V  H  H  T  S  C  P  Y  T  P  E  Q  N  G  V  A  E  R  K  H  R  H  L  I  E  T  V  V  T  L  L  H  E  S  H  L  P  A  P  F  W  V  E  A  L  A  T  A  N  Y  L  I  N  R  M  P  T  P  S  L  S  N  T  S  P  Y  E  C  L  Y  T  H  R  P  D  Y  T  H  L  R  P  F  G  C  L  A  Y  P  W  L  R  P  H  T  Q  H  K  L  Q  P  R  S  T  P  C  I  F  L  G  Y  H  P  T  I  K  G  Y  K  C  F  E  P  I  S  Q  K  T  Y  V  S  R  H  V  R  F  I  E  E  D  F  P  Y  P  R  L  S  S  V  N  A  M  S  N  P  L  G  L  I  P  I  F  P  P  S  S  H  G  L  V  P  A  S  I  T  P  S  I  I  H  T  P  P  N  P  N  P  L  I  P  S  G  S  P  T  T  P  N  P  P  I  P  P  T  F  N  P  P  H  Q  Q  S  P  P  A  E  T  T  P  P  P  P  P  P  P  L  H  H  M  Q  T  R  S  K  F  G  I  F  K  P  K  V  Y  T  T  T  S  L  A  P  S  P  S  E  P  T  T  Y  K  Q  A  S  T  N  P  L  W  C  Q  A  M  D  D  E  Y  R  S  L  I  N  Q  H  T  W  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27825" stop="26950"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLQSLGIVHHTSCPYTPEQNGVAERKHRHLIETVVTLLHESHLPAPFWVEALATANYLINRMPTPSLSNTSPYECLYTHRPDYTHLRPFGCLAYPWLRPHTQHKLQPRSTPCIFLGYHPTIKGYKCFEPISQKTYVSRHVRFIEEDFPYPRLSSVNAMSNPLGLIPIFPPSSHGLVPASITPSIIHTPPNPNPLIPSGSPTTPNPPIPPTFNPPHQQSPPAETTPPPPPPPLHHMQTRSKFGIFKPKVYTTTSLAPSPSEPTTYKQASTNPLWCQAMDDEYRSLINQHTWEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="40192" PGL_stop="39578"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40192" e_stop="39939"/>
            <exon e_start="39842" e_stop="39578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.940" acc_prob="0.868" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40192" e_stop="39939" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.940" acc_prob="0.868">
            <gDNA_intron_boundary i_start="39938" i_stop="39843" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39842" e_stop="39578" e_length="265"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40192" stop="39939"/>
              <exon start="39842" stop="39578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270113" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCCTCTGAGACAAACACTCCACTAATTAGTGGTAGTCATTTAGCTGAAGACCTTCAAGCACAATGGATGAATCTCACAGCTGAAGTGGAATTAAATCCTGGTGAGCTTTCGGTGGTTTATATTTGTGAGTTTCCGGAGATCAAAGGGAAGTTCTATCCAGATAAGGCTGCTGCTCTCGGAGTGGAACCTGGGCCAAAATATGGTCAATTGCAAAGAGGGAATTCGGTGGAGTCAGATCATCAAAATATCATA : GTTCACCCTTGCGATGTTATGGAGCCTTCCACTCACGGTCCTATTGTGCTCCTTGTTGACTGTCCAACACCATCTCATCTGCAAGAGTTGTCATCTTTGCAGTCTCTTACTCCGTTTTACTCGAATATATCAGGACAACCTGTCGAACTGTGCAAAAAAGTAAATTGTTTGATACACCTTAGCCCTGTGTCAGTAACAAATACACCCGCGTATGAGCAATGGATGGCCAGATTTGGTGAAGCCCATCACATAATGGCACGACATG</gDNA_template>
            <first_frame> D  P  L  R  Q  T  L  H  *  L  V  V  V  I  *  L  K  T  F  K  H  N  G  *  I  S  Q  L  K  W  N  *  I  L  V  S  F  R  W  F  I  F  V  S  F  R  R  S  K  G  S  S  I  Q  I  R  L  L  L  S  E  W  N  L  G  Q  N  M  V  N  C  K  E  G  I  R  W  S  Q  I  I  K  I  S  * :   F  T  L  A  M  L  W  S  L  P  L  T  V  L  L  C  S  L  L  T  V  Q  H  H  L  I  C  K  S  C  H  L  C  S  L  L  L  R  F  T  R  I  Y  Q  D  N  L  S  N  C  A  K  K  *  I  V  *  Y  T  L  A  L  C  Q  *  Q  I  H  P  R  M  S  N  G  W  P  D  L  V  K  P  I  T  *  W  H  D  M </first_frame>
            <second_frame>  I  L  *  D  K  H  S  T  N  *  W  *  S  F  S  *  R  P  S  S  T  M  D  E  S  H  S  *  S  G  I  K  S  W  *  A  F  G  G  L  Y  L  *  V  S  G  D  Q  R  E  V  L  S  R  *  G  C  C  S  R  S  G  T  W  A  K  I  W  S  I  A  K  R  E  F  G  G  V  R  S  S  K  Y  H   : S  S  P  L  R  C  Y  G  A  F  H  S  R  S  Y  C  A  P  C  *  L  S  N  T  I  S  S  A  R  V  V  I  F  A  V  S  Y  S  V  L  L  E  Y  I  R  T  T  C  R  T  V  Q  K  S  K  L  F  D  T  P  *  P  C  V  S  N  K  Y  T  R  V  *  A  M  D  G  Q  I  W  *  S  P  S  H  N  G  T  T   </second_frame>
            <third_frame>   S  S  E  T  N  T  P  L  I  S  G  S  H  L  A  E  D  L  Q  A  Q  W  M  N  L  T  A  E  V  E  L  N  P  G  E  L  S  V  V  Y  I  C  E  F  P  E  I  K  G  K  F  Y  P  D  K  A  A  A  L  G  V  E  P  G  P  K  Y  G  Q  L  Q  R  G  N  S  V  E  S  D  H  Q  N  I  I  :  V  H  P  C  D  V  M  E  P  S  T  H  G  P  I  V  L  L  V  D  C  P  T  P  S  H  L  Q  E  L  S  S  L  Q  S  L  T  P  F  Y  S  N  I  S  G  Q  P  V  E  L  C  K  K  V  N  C  L  I  H  L  S  P  V  S  V  T  N  T  P  A  Y  E  Q  W  M  A  R  F  G  E  A  H  H  I  M  A  R  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40190" stop="39939"/>
                    <exon start="39842" stop="39579"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSETNTPLISGSHLAEDLQAQWMNLTAEVELNPGELSVVYICEFPEIKGKFYPDKAAALGVEPGPKYGQLQRGNSVESDHQNIIVHPCDVMEPSTHGPIVLLVDCPTPSHLQELSSLQSLTPFYSNISGQPVELCKKVNCLIHLSPVSVTNTPAYEQWMARFGEAHHIMARH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="43762" PGL_stop="40261"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43762" e_stop="43189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43762" e_stop="43189" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43762" stop="43189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339268" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGAAACTAAGAATTCGCCGGTGGAAGAGAGAAAGAGGGAATCGTTGTGTAAATTTTTGAGTGGAATGGGGAAGAAGAGGAAAAGAAGGGCTGAGGGTAATCATAGTAATGACAAGCCGAAGAAAAACCCTCTACCGGAAGAAGACGAGCTCAAAAAAACTGGTAATAACAAGTCATATATACAGGTAAGTTCAAAATGTGGTGATTTCTGTCAATTTAAGCAGGAAACTGAACTGGGTGTTACTCAACATAGAAAGAATAACAATGTAAATGGTATTGTAGTTTTGGAGATAGTTAAATTCAAAGAATAAAGTTTTCTGCTTTGTACTGATAAAAGGAAAATTTCTGAAGAAGTGTTGTTTATTTTGGTAGTTTGACATTTTTAATGTGTATTGTATGTACACTATATATGTGTGAAAAGATTTAGCAATTGATTAGAGCATAAAGTTCTGTCTTTTCTGTTAGTTTTGAATAATAACGTTTTGAATATTTTGCACCTAAGAGTGTGGCCTAGTGTGGCCCAGTGGTCCATTAATTGGTTGAGGTTCAAATCCCAGCATAGACAAAAAAAAAA</gDNA_template>
            <first_frame> P  K  L  R  I  R  R  W  K  R  E  R  G  N  R  C  V  N  F  *  V  E  W  G  R  R  G  K  E  G  L  R  V  I  I  V  M  T  S  R  R  K  T  L  Y  R  K  K  T  S  S  K  K  L  V  I  T  S  H  I  Y  R  *  V  Q  N  V  V  I  S  V  N  L  S  R  K  L  N  W  V  L  L  N  I  E  R  I  T  M  *  M  V  L  *  F  W  R  *  L  N  S  K  N  K  V  F  C  F  V  L  I  K  G  K  F  L  K  K  C  C  L  F  W  *  F  D  I  F  N  V  Y  C  M  Y  T  I  Y  V  *  K  D  L  A  I  D  *  S  I  K  F  C  L  F  C  *  F  *  I  I  T  F  *  I  F  C  T  *  E  C  G  L  V  W  P  S  G  P  L  I  G  *  G  S  N  P  S  I  D  K  K  K  </first_frame>
            <second_frame>  R  N  *  E  F  A  G  G  R  E  K  E  G  I  V  V  *  I  F  E  W  N  G  E  E  E  E  K  K  G  *  G  *  S  *  *  *  Q  A  E  E  K  P  S  T  G  R  R  R  A  Q  K  N  W  *  *  Q  V  I  Y  T  G  K  F  K  M  W  *  F  L  S  I  *  A  G  N  *  T  G  C  Y  S  T  *  K  E  *  Q  C  K  W  Y  C  S  F  G  D  S  *  I  Q  R  I  K  F  S  A  L  Y  *  *  K  E  N  F  *  R  S  V  V  Y  F  G  S  L  T  F  L  M  C  I  V  C  T  L  Y  M  C  E  K  I  *  Q  L  I  R  A  *  S  S  V  F  S  V  S  F  E  *  *  R  F  E  Y  F  A  P  K  S  V  A  *  C  G  P  V  V  H  *  L  V  E  V  Q  I  P  A  *  T  K  K  K </second_frame>
            <third_frame>   E  T  K  N  S  P  V  E  E  R  K  R  E  S  L  C  K  F  L  S  G  M  G  K  K  R  K  R  R  A  E  G  N  H  S  N  D  K  P  K  K  N  P  L  P  E  E  D  E  L  K  K  T  G  N  N  K  S  Y  I  Q  V  S  S  K  C  G  D  F  C  Q  F  K  Q  E  T  E  L  G  V  T  Q  H  R  K  N  N  N  V  N  G  I  V  V  L  E  I  V  K  F  K  E  *  S  F  L  L  C  T  D  K  R  K  I  S  E  E  V  L  F  I  L  V  V  *  H  F  *  C  V  L  Y  V  H  Y  I  C  V  K  R  F  S  N  *  L  E  H  K  V  L  S  F  L  L  V  L  N  N  N  V  L  N  I  L  H  L  R  V  W  P  S  V  A  Q  W  S  I  N  W  L  R  F  K  S  Q  H  R  Q  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43760" stop="43452"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETKNSPVEERKRESLCKFLSGMGKKRKRRAEGNHSNDKPKKNPLPEEDELKKTGNNKSYIQVSSKCGDFCQFKQETELGVTQHRKNNNVNGIVVLEIVKFKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43757" e_stop="43578"/>
            <exon e_start="42759" e_stop="42670"/>
            <exon e_start="41040" e_stop="40996"/>
            <exon e_start="40895" e_stop="40667"/>
            <exon e_start="40430" e_stop="40261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.920" e_score="0.933"/>
          <exon-intron don_prob="0.873" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="0.991"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="43757" e_stop="43578" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.920">
            <gDNA_intron_boundary i_start="43577" i_stop="42760" i_length="818"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42759" e_stop="42670" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.873" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42669" i_stop="41041" i_length="1629"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41040" e_stop="40996" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.825">
            <gDNA_intron_boundary i_start="40995" i_stop="40896" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="40895" e_stop="40667" e_length="229"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="40666" i_stop="40431" i_length="236"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="40430" e_stop="40261" e_length="170"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43757" stop="43578"/>
              <exon start="42759" stop="42670"/>
              <exon start="41040" stop="40996"/>
              <exon start="40895" stop="40667"/>
              <exon start="40430" stop="40261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTAAGAATTCGCCGGTGGAAGAGAGAAAGAGGGAATCGTTGTGTAAATTTTTGAGTGGAATGGGGAAGAAGAGGAAAAGAAGGGCTGAGGGTAATCATAGTAATGACAAGCCGAAGAAAAACCCTCTACCGGAAGAAGACGAGCTCAAAAAAACTGGTAATAACAAGTCATATATACAG : ATCCTAGGAAATGGCATGGATACTCAAGATACATCACCCTCTGTCCTCCTCTTTTCGGACAAATGGAGGTTTTTATTTAACGCGGGAGAA : GGATTGCAACGCTTCTTGACAGAGCATAAAATTACATTGTCACAG : ATTGATCACATATTTCTATCACGTGTCTGCTCAGAAACTGTTGGTGGACTCCCAGGTTGGTTATCAATGAGCACAATATGAAAGTTAACTTAACTGTCTGGATCAAACTAACCCTTGAGAAGACTCTGGCGTATTGATTGCAGTTGATTAAAACCACCAAAGAAGTTCTATTGTTTTACTTGCAGGTCTCCTATTGACTTTGGCTGGGATGGGAAAAGAAGGGATGTCA : GTAAATGTATCGGGTCCTCCGGATCTTTATCTATTGGTTAAAGCAATGGAATCATTCATCCCAAATTCTGCCATGGGTCAAATAGATAGTGTTCTCTGTAATGGATCAGATGAAGTTGCTAGCGCTTCTTCAAGTAAGTTTGATCGTCTTTTTGCTCCCATTACTGATGG</gDNA_template>
            <first_frame> T  K  N  S  P  V  E  E  R  K  R  E  S  L  C  K  F  L  S  G  M  G  K  K  R  K  R  R  A  E  G  N  H  S  N  D  K  P  K  K  N  P  L  P  E  E  D  E  L  K  K  T  G  N  N  K  S  Y  I  Q  :  I  L  G  N  G  M  D  T  Q  D  T  S  P  S  V  L  L  F  S  D  K  W  R  F  L  F  N  A  G  E  :  G  L  Q  R  F  L  T  E  H  K  I  T  L  S  Q  :  I  D  H  I  F  L  S  R  V  C  S  E  T  V  G  G  L  P  G  W  L  S  M  S  T  I  *  K  L  T  *  L  S  G  S  N  *  P  L  R  R  L  W  R  I  D  C  S  *  L  K  P  P  K  K  F  Y  C  F  T  C  R  S  P  I  D  F  G  W  D  G  K  R  R  D  V   : S  K  C  I  G  S  S  G  S  L  S  I  G  *  S  N  G  I  I  H  P  K  F  C  H  G  S  N  R  *  C  S  L  *  W  I  R  *  S  C  *  R  F  F  K  *  V  *  S  S  F  C  S  H  Y  *  W </first_frame>
            <second_frame>  L  R  I  R  R  W  K  R  E  R  G  N  R  C  V  N  F  *  V  E  W  G  R  R  G  K  E  G  L  R  V  I  I  V  M  T  S  R  R  K  T  L  Y  R  K  K  T  S  S  K  K  L  V  I  T  S  H  I  Y  R :   S  *  E  M  A  W  I  L  K  I  H  H  P  L  S  S  S  F  R  T  N  G  G  F  Y  L  T  R  E  K :   D  C  N  A  S  *  Q  S  I  K  L  H  C  H  R :   L  I  T  Y  F  Y  H  V  S  A  Q  K  L  L  V  D  S  Q  V  G  Y  Q  *  A  Q  Y  E  S  *  L  N  C  L  D  Q  T  N  P  *  E  D  S  G  V  L  I  A  V  D  *  N  H  Q  R  S  S  I  V  L  L  A  G  L  L  L  T  L  A  G  M  G  K  E  G  M  S  :  V  N  V  S  G  P  P  D  L  Y  L  L  V  K  A  M  E  S  F  I  P  N  S  A  M  G  Q  I  D  S  V  L  C  N  G  S  D  E  V  A  S  A  S  S  S  K  F  D  R  L  F  A  P  I  T  D   </second_frame>
            <third_frame>   *  E  F  A  G  G  R  E  K  E  G  I  V  V  *  I  F  E  W  N  G  E  E  E  E  K  K  G  *  G  *  S  *  *  *  Q  A  E  E  K  P  S  T  G  R  R  R  A  Q  K  N  W  *  *  Q  V  I  Y  T   : D  P  R  K  W  H  G  Y  S  R  Y  I  T  L  C  P  P  L  F  G  Q  M  E  V  F  I  *  R  G  R   : R  I  A  T  L  L  D  R  A  *  N  Y  I  V  T   : D  *  S  H  I  S  I  T  C  L  L  R  N  C  W  W  T  P  R  L  V  I  N  E  H  N  M  K  V  N  L  T  V  W  I  K  L  T  L  E  K  T  L  A  Y  *  L  Q  L  I  K  T  T  K  E  V  L  L  F  Y  L  Q  V  S  Y  *  L  W  L  G  W  E  K  K  G  C  Q :   *  M  Y  R  V  L  R  I  F  I  Y  W  L  K  Q  W  N  H  S  S  Q  I  L  P  W  V  K  *  I  V  F  S  V  M  D  Q  M  K  L  L  A  L  L  Q  V  S  L  I  V  F  L  L  P  L  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43757" stop="43578"/>
                    <exon start="42759" stop="42670"/>
                    <exon start="41040" stop="40996"/>
                    <exon start="40895" stop="40815"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKNSPVEERKRESLCKFLSGMGKKRKRRAEGNHSNDKPKKNPLPEEDELKKTGNNKSYIQILGNGMDTQDTSPSVLLFSDKWRFLFNAGEGLQRFLTEHKITLSQIDHIFLSRVCSETVGGLPGWLSMSTI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40744" stop="40667"/>
                    <exon start="40430" stop="40263"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHQRSSIVLLAGLLLTLAGMGKEGMSVNVSGPPDLYLLVKAMESFIPNSAMGQIDSVLCNGSDEVASASSSKFDRLFAPITD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="48853" PGL_stop="50868"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48853" e_stop="48993"/>
            <exon e_start="49103" e_stop="49241"/>
            <exon e_start="50221" e_stop="50369"/>
            <exon e_start="50473" e_stop="50726"/>
            <exon e_start="50820" e_stop="50868"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.868" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.996"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48853" e_stop="48993" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.868">
            <gDNA_intron_boundary i_start="48994" i_stop="49102" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49103" e_stop="49241" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49242" i_stop="50220" i_length="979"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50221" e_stop="50369" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50370" i_stop="50472" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="50473" e_stop="50726" e_length="254"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50727" i_stop="50819" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="0.959">
            <gDNA_exon_boundary e_start="50820" e_stop="50868" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48853" stop="48993"/>
              <exon start="49103" stop="49241"/>
              <exon start="50221" stop="50369"/>
              <exon start="50473" stop="50726"/>
              <exon start="50820" stop="50868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48853" stop="48993"/>
              <exon start="49103" stop="49241"/>
              <exon start="50221" stop="50369"/>
              <exon start="50473" stop="50726"/>
              <exon start="50820" stop="50834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316070" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGAGCCCAACATGACCGACCCGTCCCACACTCTTTCTCCAAAACGGCGCGGCATCTCTTCCCTCTCGCGAATTCAAAGTTTCAAACAGCAAAGAAGCTTCAATGCAGACACAGGACTAATATATAGCAGCAAAATTGAAG : GTTAAATTGGACTCAATTCACGCTCCAAGTCGATGAACTCTTGAATGTAATGATCTTCCTCCCTGCCGCTGCTGCTGCTGCCTAATGGACGACGTTGATCGCTTATTTGAATGCTTCAAATGCGGCATTTCTCCCCCTC : AATCAGCAATAAGAGAAAGGAAAAAGGGAAAGCAGACTGTGAAGCAAAGTGATACATTGGAAAAGCTATCAACATCTTCAGATATTTTTTCATCAAGATCAAAGGGAAAGGTCCAAAATGCAACAGATGTTGAGCTCTGCCTACAAAAT : TTTCTTGAATTGTATTGACAAGTACTATTTTTCAAGCACATCCCATGCCGGTGGAAACTACTAACTGAAATTCAAAGATTCTTCTTGTAGACCAGTTCATCAACAACAAAGATACAAAGTCTTAAGAAAGCATCACAGCTCTCTCCCCTAGTGTTTTATGGTTCTCCACATGGAGTTCCTCCAAAAAGACCAGCTCGTTTGTTGCGGCTGTTGAATGAAATCCGTGTAGACTTTAACGAGCAACATAAATTAAG : CCAAGATATATGGGCCACATTTCCAAGGCAAGATGAAGCGATGAAGTAT</gDNA_template>
            <first_frame> S  S  P  T  *  P  T  R  P  T  L  F  L  Q  N  G  A  A  S  L  P  S  R  E  F  K  V  S  N  S  K  E  A  S  M  Q  T  Q  D  *  Y  I  A  A  K  L  K  :  V  K  L  D  S  I  H  A  P  S  R  *  T  L  E  C  N  D  L  P  P  C  R  C  C  C  C  L  M  D  D  V  D  R  L  F  E  C  F  K  C  G  I  S  P  P   : Q  S  A  I  R  E  R  K  K  G  K  Q  T  V  K  Q  S  D  T  L  E  K  L  S  T  S  S  D  I  F  S  S  R  S  K  G  K  V  Q  N  A  T  D  V  E  L  C  L  Q  N  :  F  L  E  L  Y  *  Q  V  L  F  F  K  H  I  P  C  R  W  K  L  L  T  E  I  Q  R  F  F  L  *  T  S  S  S  T  T  K  I  Q  S  L  K  K  A  S  Q  L  S  P  L  V  F  Y  G  S  P  H  G  V  P  P  K  R  P  A  R  L  L  R  L  L  N  E  I  R  V  D  F  N  E  Q  H  K  L  S :   Q  D  I  W  A  T  F  P  R  Q  D  E  A  M  K  Y </first_frame>
            <second_frame>  R  A  Q  H  D  R  P  V  P  H  S  F  S  K  T  A  R  H  L  F  P  L  A  N  S  K  F  Q  T  A  K  K  L  Q  C  R  H  R  T  N  I  *  Q  Q  N  *  R :   L  N  W  T  Q  F  T  L  Q  V  D  E  L  L  N  V  M  I  F  L  P  A  A  A  A  A  A  *  W  T  T  L  I  A  Y  L  N  A  S  N  A  A  F  L  P  L  :  N  Q  Q  *  E  K  G  K  R  E  S  R  L  *  S  K  V  I  H  W  K  S  Y  Q  H  L  Q  I  F  F  H  Q  D  Q  R  E  R  S  K  M  Q  Q  M  L  S  S  A  Y  K  I :   F  L  N  C  I  D  K  Y  Y  F  S  S  T  S  H  A  G  G  N  Y  *  L  K  F  K  D  S  S  C  R  P  V  H  Q  Q  Q  R  Y  K  V  L  R  K  H  H  S  S  L  P  *  C  F  M  V  L  H  M  E  F  L  Q  K  D  Q  L  V  C  C  G  C  *  M  K  S  V  *  T  L  T  S  N  I  N  *   : A  K  I  Y  G  P  H  F  Q  G  K  M  K  R  *  S   </second_frame>
            <third_frame>   E  P  N  M  T  D  P  S  H  T  L  S  P  K  R  R  G  I  S  S  L  S  R  I  Q  S  F  K  Q  Q  R  S  F  N  A  D  T  G  L  I  Y  S  S  K  I  E   : G  *  I  G  L  N  S  R  S  K  S  M  N  S  *  M  *  *  S  S  S  L  P  L  L  L  L  P  N  G  R  R  *  S  L  I  *  M  L  Q  M  R  H  F  S  P  S :   I  S  N  K  R  K  E  K  G  K  A  D  C  E  A  K  *  Y  I  G  K  A  I  N  I  F  R  Y  F  F  I  K  I  K  G  K  G  P  K  C  N  R  C  *  A  L  P  T  K   : F  S  *  I  V  L  T  S  T  I  F  Q  A  H  P  M  P  V  E  T  T  N  *  N  S  K  I  L  L  V  D  Q  F  I  N  N  K  D  T  K  S  *  E  S  I  T  A  L  S  P  S  V  L  W  F  S  T  W  S  S  S  K  K  T  S  S  F  V  A  A  V  E  *  N  P  C  R  L  *  R  A  T  *  I  K  :  P  R  Y  M  G  H  I  S  K  A  R  *  S  D  E  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49139" stop="49241"/>
                    <exon start="50221" stop="50369"/>
                    <exon start="50473" stop="50490"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLECNDLPPCRCCCCLMDDVDRLFECFKCGISPPQSAIRERKKGKQTVKQSDTLEKLSTSSDIFSSRSKGKVQNATDVELCLQNFLELY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50563" stop="50726"/>
                    <exon start="50820" stop="50868"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSSSTTKIQSLKKASQLSPLVFYGSPHGVPPKRPARLLRLLNEIRVDFNEQHKLSQDIWATFPRQDEAMKY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="63910" PGL_stop="62169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63902" e_stop="63710"/>
            <exon e_start="63301" e_stop="63051"/>
            <exon e_start="62970" e_stop="62388"/>
            <exon e_start="62207" e_stop="62186"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.531" acc_prob="0.956" e_score="0.998"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63902" e_stop="63710" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63301" e_stop="63051" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="62970" e_stop="62388" e_length="583"/>
          </exon>
          <intron i_serial="3" don_prob="0.531" acc_prob="0.956">
            <gDNA_intron_boundary i_start="62387" i_stop="62208" i_length="180"/>
          </intron>
          <exon e_serial="4" e_score="0.727">
            <gDNA_exon_boundary e_start="62207" e_stop="62186" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63902" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63902" stop="63710"/>
              <exon start="63301" stop="63160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63901" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63900" stop="63710"/>
              <exon start="63301" stop="63122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63899" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63898" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63896" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63895" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63895" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63894" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63892" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63891" stop="63710"/>
              <exon start="63301" stop="63051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63890" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63890" stop="63710"/>
              <exon start="63301" stop="63177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63886" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63884" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63884" stop="63710"/>
              <exon start="63301" stop="63098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63881" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63871" stop="63710"/>
              <exon start="63301" stop="63051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63860" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63821" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63287" stop="63051"/>
              <exon start="62970" stop="62388"/>
              <exon start="62207" stop="62186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63217" stop="63051"/>
              <exon start="62970" stop="62535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346175" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA : ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG : GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTATAGCAATGTGTTCATGAACCACGAACATGCACCTTTATCGAGCGATTTTTAAGTTCTAAATTGATAATTTGTACGTTGTTTGAATTTATGTTGGGTCTAGAAATTGATTTGCCTTTTTTGTACGTAATAAAGAAAGAAAAAAAGTAATATATTGCTTTTTTTTCTTTCTTTTGTTTTGTTTTATTGTTACTTTTTTTTTTTTTTTTAAGTTTTTGGTTTGCAGCTGTACATTCATGTTTTTGGTGTTCAATTGATTTATGAGTTTG : CTCGAATATCAAAAAGAAAAAA</gDNA_template>
            <first_frame> S  K  Q  A  F  S  *  C  L  F  Y  Y  K  F  F  F  L  L  *  I  *  K  M  P  C  I  A  F  G  R  F  D  D  S  F  S  L  G  S  I  K  A  Y  I  A  E  F  I  S  T  L  L  F  V  F  A  G  V  G  S  A  I  A  Y   : N  K  V  T  A  D  A  A  L  D  P  S  G  L  V  A  V  A  V  C  H  G  F  A  L  F  V  A  V  A  I  A  A  N  I  S  G  G  H  V  N  P  A  V  T  F  G  L  A  L  G  G  Q  I  T  L  L  T  G  L  F  Y  W  I  A  Q  L  L  G  A  I  V  G  C  Y  L  L  K  V  V  T  G  G  M  :  A  V  P  I  H  G  V  A  A  G  V  G  A  A  E  G  V  V  M  E  I  I  I  T  F  A  L  V  Y  T  V  Y  A  T  A  A  D  P  K  K  G  S  L  G  T  I  A  P  I  A  I  G  F  I  V  G  A  N  I  L  A  A  G  P  F  S  G  G  S  M  N  P  A  R  S  F  G  P  A  V  V  S  G  N  F  A  G  I  W  I  Y  W  V  G  P  L  V  G  G  G  L  A  G  L  I  Y  S  N  V  F  M  N  H  E  H  A  P  L  S  S  D  F  *  V  L  N  *  *  F  V  R  C  L  N  L  C  W  V  *  K  L  I  C  L  F  C  T  *  *  R  K  K  K  S  N  I  L  L  F  F  L  S  F  V  L  F  Y  C  Y  F  F  F  F  F  *  V  F  G  L  Q  L  Y  I  H  V  F  G  V  Q  L  I  Y  E  F   : A  R  I  S  K  R  K   </first_frame>
            <second_frame>  A  S  K  H  F  L  S  V  Y  F  T  I  N  F  F  F  C  Y  K  F  K  K  C  L  A  *  L  L  D  D  S  M  I  H  S  A  *  G  L  L  R  P  T  L  L  N  S  S  L  L  C  S  L  S  S  P  E  L  V  Q  L  L  L  T  :  T  R  *  Q  L  M  L  L  L  I  R  L  G  *  *  L  L  Q  F  A  M  D  S  H  C  S  W  L  L  P  L  L  L  I  S  P  V  V  T  S  T  L  P  S  H  S  D  W  L  S  V  A  K  S  P  S  S  P  V  Y  F  T  G  L  L  N  F  W  V  Q  L  L  A  V  T  F  S  K  L  *  L  E  E  W :   R  F  R  S  T  V  W  L  L  E  *  E  L  P  K  E  W  *  W  K  *  S  L  H  L  L  W  C  T  Q  C  T  P  Q  Q  L  T  R  R  R  V  H  W  V  P  L  H  P  *  R  S  V  S  L  L  V  L  I  F  *  L  Q  A  R  S  L  E  V  Q  *  T  Q  P  V  H  L  D  P  L  W  L  V  E  T  L  L  V  F  G  F  I  G  L  D  H  L  L  A  V  G  *  L  V  L  S  I  A  M  C  S  *  T  T  N  M  H  L  Y  R  A  I  F  K  F  *  I  D  N  L  Y  V  V  *  I  Y  V  G  S  R  N  *  F  A  F  F  V  R  N  K  E  R  K  K  V  I  Y  C  F  F  F  F  L  L  F  C  F  I  V  T  F  F  F  F  F  K  F  L  V  C  S  C  T  F  M  F  L  V  F  N  *  F  M  S  L  :  L  E  Y  Q  K  E  K  </second_frame>
            <third_frame>   Q  A  S  I  F  L  V  F  I  L  L  *  I  F  F  F  V  I  N  L  K  N  A  L  H  S  F  W  T  I  R  *  F  I  Q  L  R  V  Y  *  G  L  H  C  *  I  H  L  Y  F  A  L  C  L  R  R  S  W  F  S  Y  C  L  Q :   Q  G  D  S  *  C  C  S  *  S  V  W  A  S  S  C  C  S  L  P  W  I  R  T  V  R  G  C  C  H  C  C  *  Y  L  R  W  S  R  Q  P  C  R  H  I  R  I  G  S  R  W  P  N  H  P  P  H  R  S  I  L  L  D  C  S  T  F  G  C  N  C  W  L  L  P  S  Q  S  C  D  W  R  N   : G  G  S  D  P  R  C  G  C  W  S  R  S  C  R  R  S  G  D  G  N  N  H  Y  I  C  F  G  V  H  S  V  R  H  S  S  *  P  E  E  G  F  I  G  Y  H  C  T  H  S  D  R  F  H  C  W  C  *  Y  F  S  C  R  P  V  L  W  R  F  N  E  P  S  P  F  I  W  T  R  C  G  *  W  K  L  C  W  Y  L  D  L  L  G  W  T  T  C  W  R  W  V  S  W  S  Y  L  *  Q  C  V  H  E  P  R  T  C  T  F  I  E  R  F  L  S  S  K  L  I  I  C  T  L  F  E  F  M  L  G  L  E  I  D  L  P  F  L  Y  V  I  K  K  E  K  K  *  Y  I  A  F  F  S  F  F  C  F  V  L  L  L  L  F  F  F  F  L  S  F  W  F  A  A  V  H  S  C  F  W  C  S  I  D  L  *  V  C :   S  N  I  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63839" stop="63710"/>
                    <exon start="63301" stop="63051"/>
                    <exon start="62970" stop="62602"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMPCIAFGRFDDSFSLGSIKAYIAEFISTLLFVFAGVGSAIAYNKVTADAALDPSGLVAVAVCHGFALFVAVAIAANISGGHVNPAVTFGLALGGQITLLTGLFYWIAQLLGAIVGCYLLKVVTGGMAVPIHGVAAGVGAAEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFAGIWIYWVGPLVGGGLAGLIYSNVFMNHEHAPLSSDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63902" e_stop="63710"/>
            <exon e_start="63301" e_stop="63051"/>
            <exon e_start="62970" e_stop="62378"/>
            <exon e_start="62207" e_stop="62187"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.956" e_score="0.995"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63902" e_stop="63710" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63301" e_stop="63051" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="62970" e_stop="62378" e_length="593"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="62377" i_stop="62208" i_length="170"/>
          </intron>
          <exon e_serial="4" e_score="0.714">
            <gDNA_exon_boundary e_start="62207" e_stop="62187" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63902" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63902" stop="63710"/>
              <exon start="63301" stop="63160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63901" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63900" stop="63710"/>
              <exon start="63301" stop="63122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63899" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63898" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63896" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63895" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63895" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63894" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63892" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63891" stop="63710"/>
              <exon start="63301" stop="63051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63890" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63890" stop="63710"/>
              <exon start="63301" stop="63177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63886" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63884" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63884" stop="63710"/>
              <exon start="63301" stop="63098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63881" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63871" stop="63710"/>
              <exon start="63301" stop="63051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63860" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63821" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63217" stop="63051"/>
              <exon start="62970" stop="62535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62769" stop="62378"/>
              <exon start="62207" stop="62187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225802" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA : ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG : GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTATAGCAATGTGTTCATGAACCACGAACATGCACCTTTATCGAGCGATTTTTAAGTTCTAAATTGATAATTTGTACGTTGTTTGAATTTATGTTGGGTCTAGAAATTGATTTGCCTTTTTTGTACGTAATAAAGAAAGAAAAAAAGTAATATATTGCTTTTTTTTCTTTCTTTTGTTTTGTTTTATTGTTACTTTTTTTTTTTTTTTTAAGTTTTTGGTTTGCAGCTGTACATTCATGTTTTTGGTGTTCAATTGATTTATGAGTTTGGTGAGAACCG : CTCGAATATCAAAAAGAAAAA</gDNA_template>
            <first_frame> S  K  Q  A  F  S  *  C  L  F  Y  Y  K  F  F  F  L  L  *  I  *  K  M  P  C  I  A  F  G  R  F  D  D  S  F  S  L  G  S  I  K  A  Y  I  A  E  F  I  S  T  L  L  F  V  F  A  G  V  G  S  A  I  A  Y   : N  K  V  T  A  D  A  A  L  D  P  S  G  L  V  A  V  A  V  C  H  G  F  A  L  F  V  A  V  A  I  A  A  N  I  S  G  G  H  V  N  P  A  V  T  F  G  L  A  L  G  G  Q  I  T  L  L  T  G  L  F  Y  W  I  A  Q  L  L  G  A  I  V  G  C  Y  L  L  K  V  V  T  G  G  M  :  A  V  P  I  H  G  V  A  A  G  V  G  A  A  E  G  V  V  M  E  I  I  I  T  F  A  L  V  Y  T  V  Y  A  T  A  A  D  P  K  K  G  S  L  G  T  I  A  P  I  A  I  G  F  I  V  G  A  N  I  L  A  A  G  P  F  S  G  G  S  M  N  P  A  R  S  F  G  P  A  V  V  S  G  N  F  A  G  I  W  I  Y  W  V  G  P  L  V  G  G  G  L  A  G  L  I  Y  S  N  V  F  M  N  H  E  H  A  P  L  S  S  D  F  *  V  L  N  *  *  F  V  R  C  L  N  L  C  W  V  *  K  L  I  C  L  F  C  T  *  *  R  K  K  K  S  N  I  L  L  F  F  L  S  F  V  L  F  Y  C  Y  F  F  F  F  F  *  V  F  G  L  Q  L  Y  I  H  V  F  G  V  Q  L  I  Y  E  F  G  E  N  R :   S  N  I  K  K  K   </first_frame>
            <second_frame>  A  S  K  H  F  L  S  V  Y  F  T  I  N  F  F  F  C  Y  K  F  K  K  C  L  A  *  L  L  D  D  S  M  I  H  S  A  *  G  L  L  R  P  T  L  L  N  S  S  L  L  C  S  L  S  S  P  E  L  V  Q  L  L  L  T  :  T  R  *  Q  L  M  L  L  L  I  R  L  G  *  *  L  L  Q  F  A  M  D  S  H  C  S  W  L  L  P  L  L  L  I  S  P  V  V  T  S  T  L  P  S  H  S  D  W  L  S  V  A  K  S  P  S  S  P  V  Y  F  T  G  L  L  N  F  W  V  Q  L  L  A  V  T  F  S  K  L  *  L  E  E  W :   R  F  R  S  T  V  W  L  L  E  *  E  L  P  K  E  W  *  W  K  *  S  L  H  L  L  W  C  T  Q  C  T  P  Q  Q  L  T  R  R  R  V  H  W  V  P  L  H  P  *  R  S  V  S  L  L  V  L  I  F  *  L  Q  A  R  S  L  E  V  Q  *  T  Q  P  V  H  L  D  P  L  W  L  V  E  T  L  L  V  F  G  F  I  G  L  D  H  L  L  A  V  G  *  L  V  L  S  I  A  M  C  S  *  T  T  N  M  H  L  Y  R  A  I  F  K  F  *  I  D  N  L  Y  V  V  *  I  Y  V  G  S  R  N  *  F  A  F  F  V  R  N  K  E  R  K  K  V  I  Y  C  F  F  F  F  L  L  F  C  F  I  V  T  F  F  F  F  F  K  F  L  V  C  S  C  T  F  M  F  L  V  F  N  *  F  M  S  L  V  R  T   : A  R  I  S  K  R  K  </second_frame>
            <third_frame>   Q  A  S  I  F  L  V  F  I  L  L  *  I  F  F  F  V  I  N  L  K  N  A  L  H  S  F  W  T  I  R  *  F  I  Q  L  R  V  Y  *  G  L  H  C  *  I  H  L  Y  F  A  L  C  L  R  R  S  W  F  S  Y  C  L  Q :   Q  G  D  S  *  C  C  S  *  S  V  W  A  S  S  C  C  S  L  P  W  I  R  T  V  R  G  C  C  H  C  C  *  Y  L  R  W  S  R  Q  P  C  R  H  I  R  I  G  S  R  W  P  N  H  P  P  H  R  S  I  L  L  D  C  S  T  F  G  C  N  C  W  L  L  P  S  Q  S  C  D  W  R  N   : G  G  S  D  P  R  C  G  C  W  S  R  S  C  R  R  S  G  D  G  N  N  H  Y  I  C  F  G  V  H  S  V  R  H  S  S  *  P  E  E  G  F  I  G  Y  H  C  T  H  S  D  R  F  H  C  W  C  *  Y  F  S  C  R  P  V  L  W  R  F  N  E  P  S  P  F  I  W  T  R  C  G  *  W  K  L  C  W  Y  L  D  L  L  G  W  T  T  C  W  R  W  V  S  W  S  Y  L  *  Q  C  V  H  E  P  R  T  C  T  F  I  E  R  F  L  S  S  K  L  I  I  C  T  L  F  E  F  M  L  G  L  E  I  D  L  P  F  L  Y  V  I  K  K  E  K  K  *  Y  I  A  F  F  S  F  F  C  F  V  L  L  L  L  F  F  F  F  L  S  F  W  F  A  A  V  H  S  C  F  W  C  S  I  D  L  *  V  W  *  E  P  :  L  E  Y  Q  K  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63839" stop="63710"/>
                    <exon start="63301" stop="63051"/>
                    <exon start="62970" stop="62602"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMPCIAFGRFDDSFSLGSIKAYIAEFISTLLFVFAGVGSAIAYNKVTADAALDPSGLVAVAVCHGFALFVAVAIAANISGGHVNPAVTFGLALGGQITLLTGLFYWIAQLLGAIVGCYLLKVVTGGMAVPIHGVAAGVGAAEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFAGIWIYWVGPLVGGGLAGLIYSNVFMNHEHAPLSSDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="63902" e_stop="63710"/>
            <exon e_start="63301" e_stop="63051"/>
            <exon e_start="62970" e_stop="62370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63902" e_stop="63710" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63301" e_stop="63051" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="62970" e_stop="62370" e_length="601"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63902" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63902" stop="63710"/>
              <exon start="63301" stop="63160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63901" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63900" stop="63710"/>
              <exon start="63301" stop="63122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63899" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63898" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63896" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63895" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63895" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63894" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63892" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63891" stop="63710"/>
              <exon start="63301" stop="63051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63890" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63890" stop="63710"/>
              <exon start="63301" stop="63177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63886" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63884" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63884" stop="63710"/>
              <exon start="63301" stop="63098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63881" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63871" stop="63710"/>
              <exon start="63301" stop="63051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63860" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63821" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63217" stop="63051"/>
              <exon start="62970" stop="62535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62771" stop="62370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA : ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG : GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTATAGCAATGTGTTCATGAACCACGAACATGCACCTTTATCGAGCGATTTTTAAGTTCTAAATTGATAATTTGTACGTTGTTTGAATTTATGTTGGGTCTAGAAATTGATTTGCCTTTTTTGTACGTAATAAAGAAAGAAAAAAAGTAATATATTGCTTTTTTTTCTTTCTTTTGTTTTGTTTTATTGTTACTTTTTTTTTTTTTTTTAAGTTTTTGGTTTGCAGCTGTACATTCATGTTTTTGGTGTTCAATTGATTTATGAGTTTGGTGAGAACCGCTGCCCTC</gDNA_template>
            <first_frame> S  K  Q  A  F  S  *  C  L  F  Y  Y  K  F  F  F  L  L  *  I  *  K  M  P  C  I  A  F  G  R  F  D  D  S  F  S  L  G  S  I  K  A  Y  I  A  E  F  I  S  T  L  L  F  V  F  A  G  V  G  S  A  I  A  Y   : N  K  V  T  A  D  A  A  L  D  P  S  G  L  V  A  V  A  V  C  H  G  F  A  L  F  V  A  V  A  I  A  A  N  I  S  G  G  H  V  N  P  A  V  T  F  G  L  A  L  G  G  Q  I  T  L  L  T  G  L  F  Y  W  I  A  Q  L  L  G  A  I  V  G  C  Y  L  L  K  V  V  T  G  G  M  :  A  V  P  I  H  G  V  A  A  G  V  G  A  A  E  G  V  V  M  E  I  I  I  T  F  A  L  V  Y  T  V  Y  A  T  A  A  D  P  K  K  G  S  L  G  T  I  A  P  I  A  I  G  F  I  V  G  A  N  I  L  A  A  G  P  F  S  G  G  S  M  N  P  A  R  S  F  G  P  A  V  V  S  G  N  F  A  G  I  W  I  Y  W  V  G  P  L  V  G  G  G  L  A  G  L  I  Y  S  N  V  F  M  N  H  E  H  A  P  L  S  S  D  F  *  V  L  N  *  *  F  V  R  C  L  N  L  C  W  V  *  K  L  I  C  L  F  C  T  *  *  R  K  K  K  S  N  I  L  L  F  F  L  S  F  V  L  F  Y  C  Y  F  F  F  F  F  *  V  F  G  L  Q  L  Y  I  H  V  F  G  V  Q  L  I  Y  E  F  G  E  N  R  C  P  </first_frame>
            <second_frame>  A  S  K  H  F  L  S  V  Y  F  T  I  N  F  F  F  C  Y  K  F  K  K  C  L  A  *  L  L  D  D  S  M  I  H  S  A  *  G  L  L  R  P  T  L  L  N  S  S  L  L  C  S  L  S  S  P  E  L  V  Q  L  L  L  T  :  T  R  *  Q  L  M  L  L  L  I  R  L  G  *  *  L  L  Q  F  A  M  D  S  H  C  S  W  L  L  P  L  L  L  I  S  P  V  V  T  S  T  L  P  S  H  S  D  W  L  S  V  A  K  S  P  S  S  P  V  Y  F  T  G  L  L  N  F  W  V  Q  L  L  A  V  T  F  S  K  L  *  L  E  E  W :   R  F  R  S  T  V  W  L  L  E  *  E  L  P  K  E  W  *  W  K  *  S  L  H  L  L  W  C  T  Q  C  T  P  Q  Q  L  T  R  R  R  V  H  W  V  P  L  H  P  *  R  S  V  S  L  L  V  L  I  F  *  L  Q  A  R  S  L  E  V  Q  *  T  Q  P  V  H  L  D  P  L  W  L  V  E  T  L  L  V  F  G  F  I  G  L  D  H  L  L  A  V  G  *  L  V  L  S  I  A  M  C  S  *  T  T  N  M  H  L  Y  R  A  I  F  K  F  *  I  D  N  L  Y  V  V  *  I  Y  V  G  S  R  N  *  F  A  F  F  V  R  N  K  E  R  K  K  V  I  Y  C  F  F  F  F  L  L  F  C  F  I  V  T  F  F  F  F  F  K  F  L  V  C  S  C  T  F  M  F  L  V  F  N  *  F  M  S  L  V  R  T  A  A  L </second_frame>
            <third_frame>   Q  A  S  I  F  L  V  F  I  L  L  *  I  F  F  F  V  I  N  L  K  N  A  L  H  S  F  W  T  I  R  *  F  I  Q  L  R  V  Y  *  G  L  H  C  *  I  H  L  Y  F  A  L  C  L  R  R  S  W  F  S  Y  C  L  Q :   Q  G  D  S  *  C  C  S  *  S  V  W  A  S  S  C  C  S  L  P  W  I  R  T  V  R  G  C  C  H  C  C  *  Y  L  R  W  S  R  Q  P  C  R  H  I  R  I  G  S  R  W  P  N  H  P  P  H  R  S  I  L  L  D  C  S  T  F  G  C  N  C  W  L  L  P  S  Q  S  C  D  W  R  N   : G  G  S  D  P  R  C  G  C  W  S  R  S  C  R  R  S  G  D  G  N  N  H  Y  I  C  F  G  V  H  S  V  R  H  S  S  *  P  E  E  G  F  I  G  Y  H  C  T  H  S  D  R  F  H  C  W  C  *  Y  F  S  C  R  P  V  L  W  R  F  N  E  P  S  P  F  I  W  T  R  C  G  *  W  K  L  C  W  Y  L  D  L  L  G  W  T  T  C  W  R  W  V  S  W  S  Y  L  *  Q  C  V  H  E  P  R  T  C  T  F  I  E  R  F  L  S  S  K  L  I  I  C  T  L  F  E  F  M  L  G  L  E  I  D  L  P  F  L  Y  V  I  K  K  E  K  K  *  Y  I  A  F  F  S  F  F  C  F  V  L  L  L  L  F  F  F  F  L  S  F  W  F  A  A  V  H  S  C  F  W  C  S  I  D  L  *  V  W  *  E  P  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63839" stop="63710"/>
                    <exon start="63301" stop="63051"/>
                    <exon start="62970" stop="62602"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMPCIAFGRFDDSFSLGSIKAYIAEFISTLLFVFAGVGSAIAYNKVTADAALDPSGLVAVAVCHGFALFVAVAIAANISGGHVNPAVTFGLALGGQITLLTGLFYWIAQLLGAIVGCYLLKVVTGGMAVPIHGVAAGVGAAEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFAGIWIYWVGPLVGGGLAGLIYSNVFMNHEHAPLSSDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="63902" e_stop="63710"/>
            <exon e_start="63301" e_stop="63051"/>
            <exon e_start="62970" e_stop="62535"/>
            <exon e_start="62484" e_stop="62410"/>
            <exon e_start="62207" e_stop="62189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.956" e_score="0.867"/>
          <exon-only e_score="0.632"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63902" e_stop="63710" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63301" e_stop="63051" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="62970" e_stop="62535" e_length="436"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62534" i_stop="62485" i_length="50"/>
          </intron>
          <exon e_serial="4" e_score="0.867">
            <gDNA_exon_boundary e_start="62484" e_stop="62410" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="62409" i_stop="62208" i_length="202"/>
          </intron>
          <exon e_serial="5" e_score="0.632">
            <gDNA_exon_boundary e_start="62207" e_stop="62189" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63902" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63902" stop="63710"/>
              <exon start="63301" stop="63160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63901" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63900" stop="63710"/>
              <exon start="63301" stop="63122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63899" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63898" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63896" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63895" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63895" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63894" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63892" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63891" stop="63710"/>
              <exon start="63301" stop="63051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63890" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63890" stop="63710"/>
              <exon start="63301" stop="63177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63886" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63884" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63884" stop="63710"/>
              <exon start="63301" stop="63098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63881" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63871" stop="63710"/>
              <exon start="63301" stop="63051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63860" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63821" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63246" stop="63051"/>
              <exon start="62970" stop="62535"/>
              <exon start="62484" stop="62410"/>
              <exon start="62207" stop="62189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578403" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63217" stop="63051"/>
              <exon start="62970" stop="62535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346175" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA : ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG : GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTATAGCAATGTGTTCATGAACCACGAACATGCACCTTTATCGAGCGATTTTTAAGTTCTAAATTGATAATTTGTACGTTGTTTGAATTTATGTTGGGTCTAGAAATTGATTTGCCTTTTTT : TTTGTTTTGTTTTATTGTTACTTTTTTTTTTTTTTTTAAGTTTTTGGTTTGCAGCTGTACATTCATGTTTTTGGT : CTCGAATATCAAAAAGAAA</gDNA_template>
            <first_frame> S  K  Q  A  F  S  *  C  L  F  Y  Y  K  F  F  F  L  L  *  I  *  K  M  P  C  I  A  F  G  R  F  D  D  S  F  S  L  G  S  I  K  A  Y  I  A  E  F  I  S  T  L  L  F  V  F  A  G  V  G  S  A  I  A  Y   : N  K  V  T  A  D  A  A  L  D  P  S  G  L  V  A  V  A  V  C  H  G  F  A  L  F  V  A  V  A  I  A  A  N  I  S  G  G  H  V  N  P  A  V  T  F  G  L  A  L  G  G  Q  I  T  L  L  T  G  L  F  Y  W  I  A  Q  L  L  G  A  I  V  G  C  Y  L  L  K  V  V  T  G  G  M  :  A  V  P  I  H  G  V  A  A  G  V  G  A  A  E  G  V  V  M  E  I  I  I  T  F  A  L  V  Y  T  V  Y  A  T  A  A  D  P  K  K  G  S  L  G  T  I  A  P  I  A  I  G  F  I  V  G  A  N  I  L  A  A  G  P  F  S  G  G  S  M  N  P  A  R  S  F  G  P  A  V  V  S  G  N  F  A  G  I  W  I  Y  W  V  G  P  L  V  G  G  G  L  A  G  L  I  Y  S  N  V  F  M  N  H  E  H  A  P  L  S  S  D  F  *  V  L  N  *  *  F  V  R  C  L  N  L  C  W  V  *  K  L  I  C  L  F   : F  C  F  V  L  L  L  L  F  F  F  F  L  S  F  W  F  A  A  V  H  S  C  F  W   : S  R  I  S  K  R   </first_frame>
            <second_frame>  A  S  K  H  F  L  S  V  Y  F  T  I  N  F  F  F  C  Y  K  F  K  K  C  L  A  *  L  L  D  D  S  M  I  H  S  A  *  G  L  L  R  P  T  L  L  N  S  S  L  L  C  S  L  S  S  P  E  L  V  Q  L  L  L  T  :  T  R  *  Q  L  M  L  L  L  I  R  L  G  *  *  L  L  Q  F  A  M  D  S  H  C  S  W  L  L  P  L  L  L  I  S  P  V  V  T  S  T  L  P  S  H  S  D  W  L  S  V  A  K  S  P  S  S  P  V  Y  F  T  G  L  L  N  F  W  V  Q  L  L  A  V  T  F  S  K  L  *  L  E  E  W :   R  F  R  S  T  V  W  L  L  E  *  E  L  P  K  E  W  *  W  K  *  S  L  H  L  L  W  C  T  Q  C  T  P  Q  Q  L  T  R  R  R  V  H  W  V  P  L  H  P  *  R  S  V  S  L  L  V  L  I  F  *  L  Q  A  R  S  L  E  V  Q  *  T  Q  P  V  H  L  D  P  L  W  L  V  E  T  L  L  V  F  G  F  I  G  L  D  H  L  L  A  V  G  *  L  V  L  S  I  A  M  C  S  *  T  T  N  M  H  L  Y  R  A  I  F  K  F  *  I  D  N  L  Y  V  V  *  I  Y  V  G  S  R  N  *  F  A  F  F  :  F  V  L  F  Y  C  Y  F  F  F  F  F  *  V  F  G  L  Q  L  Y  I  H  V  F  G  :  L  E  Y  Q  K  E  </second_frame>
            <third_frame>   Q  A  S  I  F  L  V  F  I  L  L  *  I  F  F  F  V  I  N  L  K  N  A  L  H  S  F  W  T  I  R  *  F  I  Q  L  R  V  Y  *  G  L  H  C  *  I  H  L  Y  F  A  L  C  L  R  R  S  W  F  S  Y  C  L  Q :   Q  G  D  S  *  C  C  S  *  S  V  W  A  S  S  C  C  S  L  P  W  I  R  T  V  R  G  C  C  H  C  C  *  Y  L  R  W  S  R  Q  P  C  R  H  I  R  I  G  S  R  W  P  N  H  P  P  H  R  S  I  L  L  D  C  S  T  F  G  C  N  C  W  L  L  P  S  Q  S  C  D  W  R  N   : G  G  S  D  P  R  C  G  C  W  S  R  S  C  R  R  S  G  D  G  N  N  H  Y  I  C  F  G  V  H  S  V  R  H  S  S  *  P  E  E  G  F  I  G  Y  H  C  T  H  S  D  R  F  H  C  W  C  *  Y  F  S  C  R  P  V  L  W  R  F  N  E  P  S  P  F  I  W  T  R  C  G  *  W  K  L  C  W  Y  L  D  L  L  G  W  T  T  C  W  R  W  V  S  W  S  Y  L  *  Q  C  V  H  E  P  R  T  C  T  F  I  E  R  F  L  S  S  K  L  I  I  C  T  L  F  E  F  M  L  G  L  E  I  D  L  P  F  F :   L  F  C  F  I  V  T  F  F  F  F  F  K  F  L  V  C  S  C  T  F  M  F  L  V :   S  N  I  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63839" stop="63710"/>
                    <exon start="63301" stop="63051"/>
                    <exon start="62970" stop="62602"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMPCIAFGRFDDSFSLGSIKAYIAEFISTLLFVFAGVGSAIAYNKVTADAALDPSGLVAVAVCHGFALFVAVAIAANISGGHVNPAVTFGLALGGQITLLTGLFYWIAQLLGAIVGCYLLKVVTGGMAVPIHGVAAGVGAAEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFAGIWIYWVGPLVGGGLAGLIYSNVFMNHEHAPLSSDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="63902" e_stop="63710"/>
            <exon e_start="63301" e_stop="63051"/>
            <exon e_start="62970" e_stop="62695"/>
            <exon e_start="62532" e_stop="62511"/>
            <exon e_start="62207" e_stop="62169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.956" e_score="0.727"/>
          <exon-only e_score="0.538"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63902" e_stop="63710" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63301" e_stop="63051" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62970" e_stop="62695" e_length="276"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62694" i_stop="62533" i_length="162"/>
          </intron>
          <exon e_serial="4" e_score="0.727">
            <gDNA_exon_boundary e_start="62532" e_stop="62511" e_length="22"/>
          </exon>
          <intron i_serial="4" don_prob="0.850" acc_prob="0.956">
            <gDNA_intron_boundary i_start="62510" i_stop="62208" i_length="303"/>
          </intron>
          <exon e_serial="5" e_score="0.538">
            <gDNA_exon_boundary e_start="62207" e_stop="62169" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63902" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63902" stop="63710"/>
              <exon start="63301" stop="63160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63901" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63900" stop="63710"/>
              <exon start="63301" stop="63122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63899" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63898" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63895" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63895" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63891" stop="63710"/>
              <exon start="63301" stop="63051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63890" stop="63710"/>
              <exon start="63301" stop="63177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63886" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63884" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63884" stop="63710"/>
              <exon start="63301" stop="63098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63881" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63871" stop="63710"/>
              <exon start="63301" stop="63051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63860" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63821" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63769" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62695"/>
              <exon start="62532" stop="62511"/>
              <exon start="62207" stop="62169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740009" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA : ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG : GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGG : ACGTAATAAAGAAAGAAAAAAA : CTCGAATATCAAAAAGAAAAAAAGGGGAATCATGACCAA</gDNA_template>
            <first_frame> S  K  Q  A  F  S  *  C  L  F  Y  Y  K  F  F  F  L  L  *  I  *  K  M  P  C  I  A  F  G  R  F  D  D  S  F  S  L  G  S  I  K  A  Y  I  A  E  F  I  S  T  L  L  F  V  F  A  G  V  G  S  A  I  A  Y   : N  K  V  T  A  D  A  A  L  D  P  S  G  L  V  A  V  A  V  C  H  G  F  A  L  F  V  A  V  A  I  A  A  N  I  S  G  G  H  V  N  P  A  V  T  F  G  L  A  L  G  G  Q  I  T  L  L  T  G  L  F  Y  W  I  A  Q  L  L  G  A  I  V  G  C  Y  L  L  K  V  V  T  G  G  M  :  A  V  P  I  H  G  V  A  A  G  V  G  A  A  E  G  V  V  M  E  I  I  I  T  F  A  L  V  Y  T  V  Y  A  T  A  A  D  P  K  K  G  S  L  G  T  I  A  P  I  A  I  G  F  I  V  G  A  N  I  L  A  A  G  P  F  S  G  G  S  M  N  P  A  R  S  F  G  P  A  V  V  S  G  N  F  A  G  I  W  I  Y  W  :  T  *  *  R  K  K  K   : T  R  I  S  K  R  K  K  G  E  S  *  P  </first_frame>
            <second_frame>  A  S  K  H  F  L  S  V  Y  F  T  I  N  F  F  F  C  Y  K  F  K  K  C  L  A  *  L  L  D  D  S  M  I  H  S  A  *  G  L  L  R  P  T  L  L  N  S  S  L  L  C  S  L  S  S  P  E  L  V  Q  L  L  L  T  :  T  R  *  Q  L  M  L  L  L  I  R  L  G  *  *  L  L  Q  F  A  M  D  S  H  C  S  W  L  L  P  L  L  L  I  S  P  V  V  T  S  T  L  P  S  H  S  D  W  L  S  V  A  K  S  P  S  S  P  V  Y  F  T  G  L  L  N  F  W  V  Q  L  L  A  V  T  F  S  K  L  *  L  E  E  W :   R  F  R  S  T  V  W  L  L  E  *  E  L  P  K  E  W  *  W  K  *  S  L  H  L  L  W  C  T  Q  C  T  P  Q  Q  L  T  R  R  R  V  H  W  V  P  L  H  P  *  R  S  V  S  L  L  V  L  I  F  *  L  Q  A  R  S  L  E  V  Q  *  T  Q  P  V  H  L  D  P  L  W  L  V  E  T  L  L  V  F  G  F  I  G :   R  N  K  E  R  K  K  :  L  E  Y  Q  K  E  K  K  G  N  H  D  Q </second_frame>
            <third_frame>   Q  A  S  I  F  L  V  F  I  L  L  *  I  F  F  F  V  I  N  L  K  N  A  L  H  S  F  W  T  I  R  *  F  I  Q  L  R  V  Y  *  G  L  H  C  *  I  H  L  Y  F  A  L  C  L  R  R  S  W  F  S  Y  C  L  Q :   Q  G  D  S  *  C  C  S  *  S  V  W  A  S  S  C  C  S  L  P  W  I  R  T  V  R  G  C  C  H  C  C  *  Y  L  R  W  S  R  Q  P  C  R  H  I  R  I  G  S  R  W  P  N  H  P  P  H  R  S  I  L  L  D  C  S  T  F  G  C  N  C  W  L  L  P  S  Q  S  C  D  W  R  N   : G  G  S  D  P  R  C  G  C  W  S  R  S  C  R  R  S  G  D  G  N  N  H  Y  I  C  F  G  V  H  S  V  R  H  S  S  *  P  E  E  G  F  I  G  Y  H  C  T  H  S  D  R  F  H  C  W  C  *  Y  F  S  C  R  P  V  L  W  R  F  N  E  P  S  P  F  I  W  T  R  C  G  *  W  K  L  C  W  Y  L  D  L  L   : D  V  I  K  K  E  K  N :   S  N  I  K  K  K  K  R  G  I  M  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63839" stop="63710"/>
                    <exon start="63301" stop="63051"/>
                    <exon start="62970" stop="62695"/>
                    <exon start="62532" stop="62527"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMPCIAFGRFDDSFSLGSIKAYIAEFISTLLFVFAGVGSAIAYNKVTADAALDPSGLVAVAVCHGFALFVAVAIAANISGGHVNPAVTFGLALGGQITLLTGLFYWIAQLLGAIVGCYLLKVVTGGMAVPIHGVAAGVGAAEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFAGIWIYWT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="63902" e_stop="63710"/>
            <exon e_start="63301" e_stop="63051"/>
            <exon e_start="62970" e_stop="62860"/>
            <exon e_start="62828" e_stop="62370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63902" e_stop="63710" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63301" e_stop="63051" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62970" e_stop="62860" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62859" i_stop="62829" i_length="31"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="62828" e_stop="62370" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63902" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63902" stop="63710"/>
              <exon start="63301" stop="63160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63901" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62860"/>
              <exon start="62828" stop="62699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63901" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63900" stop="63710"/>
              <exon start="63301" stop="63122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63899" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63891" stop="63710"/>
              <exon start="63301" stop="63051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63890" stop="63710"/>
              <exon start="63301" stop="63177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63886" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63884" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63884" stop="63710"/>
              <exon start="63301" stop="63098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63871" stop="63710"/>
              <exon start="63301" stop="63051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63860" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63821" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62771" stop="62370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA : ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG : GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGAC : CCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTATTGGGTTGGACCACTTGTTGGCGGTGGGTTAGCTGGTCTTATCTATAGCAATGTGTTCATGAACCACGAACATGCACCTTTATCGAGCGATTTTTAAGTTCTAAATTGATAATTTGTACGTTGTTTGAATTTATGTTGGGTCTAGAAATTGATTTGCCTTTTTTGTACGTAATAAAGAAAGAAAAAAAGTAATATATTGCTTTTTTTTCTTTCTTTTGTTTTGTTTTATTGTTACTTTTTTTTTTTTTTTTAAGTTTTTGGTTTGCAGCTGTACATTCATGTTTTTGGTGTTCAATTGATTTATGAGTTTGGTGAGAACCGCTGCCCTC</gDNA_template>
            <first_frame> S  K  Q  A  F  S  *  C  L  F  Y  Y  K  F  F  F  L  L  *  I  *  K  M  P  C  I  A  F  G  R  F  D  D  S  F  S  L  G  S  I  K  A  Y  I  A  E  F  I  S  T  L  L  F  V  F  A  G  V  G  S  A  I  A  Y   : N  K  V  T  A  D  A  A  L  D  P  S  G  L  V  A  V  A  V  C  H  G  F  A  L  F  V  A  V  A  I  A  A  N  I  S  G  G  H  V  N  P  A  V  T  F  G  L  A  L  G  G  Q  I  T  L  L  T  G  L  F  Y  W  I  A  Q  L  L  G  A  I  V  G  C  Y  L  L  K  V  V  T  G  G  M  :  A  V  P  I  H  G  V  A  A  G  V  G  A  A  E  G  V  V  M  E  I  I  I  T  F  A  L  V  Y  T  V  Y  A  T  A  A  D  :  P  *  R  S  V  S  L  L  V  L  I  F  *  L  Q  A  R  S  L  E  V  Q  *  T  Q  P  V  H  L  D  P  L  W  L  V  E  T  L  L  V  F  G  F  I  G  L  D  H  L  L  A  V  G  *  L  V  L  S  I  A  M  C  S  *  T  T  N  M  H  L  Y  R  A  I  F  K  F  *  I  D  N  L  Y  V  V  *  I  Y  V  G  S  R  N  *  F  A  F  F  V  R  N  K  E  R  K  K  V  I  Y  C  F  F  F  F  L  L  F  C  F  I  V  T  F  F  F  F  F  K  F  L  V  C  S  C  T  F  M  F  L  V  F  N  *  F  M  S  L  V  R  T  A  A  L </first_frame>
            <second_frame>  A  S  K  H  F  L  S  V  Y  F  T  I  N  F  F  F  C  Y  K  F  K  K  C  L  A  *  L  L  D  D  S  M  I  H  S  A  *  G  L  L  R  P  T  L  L  N  S  S  L  L  C  S  L  S  S  P  E  L  V  Q  L  L  L  T  :  T  R  *  Q  L  M  L  L  L  I  R  L  G  *  *  L  L  Q  F  A  M  D  S  H  C  S  W  L  L  P  L  L  L  I  S  P  V  V  T  S  T  L  P  S  H  S  D  W  L  S  V  A  K  S  P  S  S  P  V  Y  F  T  G  L  L  N  F  W  V  Q  L  L  A  V  T  F  S  K  L  *  L  E  E  W :   R  F  R  S  T  V  W  L  L  E  *  E  L  P  K  E  W  *  W  K  *  S  L  H  L  L  W  C  T  Q  C  T  P  Q  Q  L  T :   H  S  D  R  F  H  C  W  C  *  Y  F  S  C  R  P  V  L  W  R  F  N  E  P  S  P  F  I  W  T  R  C  G  *  W  K  L  C  W  Y  L  D  L  L  G  W  T  T  C  W  R  W  V  S  W  S  Y  L  *  Q  C  V  H  E  P  R  T  C  T  F  I  E  R  F  L  S  S  K  L  I  I  C  T  L  F  E  F  M  L  G  L  E  I  D  L  P  F  L  Y  V  I  K  K  E  K  K  *  Y  I  A  F  F  S  F  F  C  F  V  L  L  L  L  F  F  F  F  L  S  F  W  F  A  A  V  H  S  C  F  W  C  S  I  D  L  *  V  W  *  E  P  L  P   </second_frame>
            <third_frame>   Q  A  S  I  F  L  V  F  I  L  L  *  I  F  F  F  V  I  N  L  K  N  A  L  H  S  F  W  T  I  R  *  F  I  Q  L  R  V  Y  *  G  L  H  C  *  I  H  L  Y  F  A  L  C  L  R  R  S  W  F  S  Y  C  L  Q :   Q  G  D  S  *  C  C  S  *  S  V  W  A  S  S  C  C  S  L  P  W  I  R  T  V  R  G  C  C  H  C  C  *  Y  L  R  W  S  R  Q  P  C  R  H  I  R  I  G  S  R  W  P  N  H  P  P  H  R  S  I  L  L  D  C  S  T  F  G  C  N  C  W  L  L  P  S  Q  S  C  D  W  R  N   : G  G  S  D  P  R  C  G  C  W  S  R  S  C  R  R  S  G  D  G  N  N  H  Y  I  C  F  G  V  H  S  V  R  H  S  S  *   : P  I  A  I  G  F  I  V  G  A  N  I  L  A  A  G  P  F  S  G  G  S  M  N  P  A  R  S  F  G  P  A  V  V  S  G  N  F  A  G  I  W  I  Y  W  V  G  P  L  V  G  G  G  L  A  G  L  I  Y  S  N  V  F  M  N  H  E  H  A  P  L  S  S  D  F  *  V  L  N  *  *  F  V  R  C  L  N  L  C  W  V  *  K  L  I  C  L  F  C  T  *  *  R  K  K  K  S  N  I  L  L  F  F  L  S  F  V  L  F  Y  C  Y  F  F  F  F  F  *  V  F  G  L  Q  L  Y  I  H  V  F  G  V  Q  L  I  Y  E  F  G  E  N  R  C  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63839" stop="63710"/>
                    <exon start="63301" stop="63051"/>
                    <exon start="62970" stop="62860"/>
                    <exon start="62828" stop="62823"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMPCIAFGRFDDSFSLGSIKAYIAEFISTLLFVFAGVGSAIAYNKVTADAALDPSGLVAVAVCHGFALFVAVAIAANISGGHVNPAVTFGLALGGQITLLTGLFYWIAQLLGAIVGCYLLKVVTGGMAVPIHGVAAGVGAAEGVVMEIIITFALVYTVYATAADP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62860" stop="62602"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFAGIWIYWVGPLVGGGLAGLIYSNVFMNHEHAPLSSDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="63910" e_stop="63493"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="63910" e_stop="63493" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63910" stop="63493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214793" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTTGAGAGCAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCT</gDNA_template>
            <first_frame> H  L  R  A  S  K  H  F  L  S  V  Y  F  T  I  N  F  F  F  C  Y  K  F  K  K  C  L  A  *  L  L  D  D  S  M  I  H  S  A  *  G  L  L  R  P  T  L  L  N  S  S  L  L  C  S  L  S  S  P  E  L  V  Q  L  L  L  T  V  N  K  T  Q  S  S  S  L  I  Y  T  L  V  I  L  Y  Y  H  R  I  L  A  Y  H  N  Q  E  R  S  *  P  C  V  S  W  V  S  S  P  F  A  E  K  *  Y  F  L  Y  M  I  K  V  I  *  L  I  P  V  F  N  S  S  N  F  E  S  P  C  *  K  F  </first_frame>
            <second_frame>  I  *  E  Q  A  S  I  F  L  V  F  I  L  L  *  I  F  F  F  V  I  N  L  K  N  A  L  H  S  F  W  T  I  R  *  F  I  Q  L  R  V  Y  *  G  L  H  C  *  I  H  L  Y  F  A  L  C  L  R  R  S  W  F  S  Y  C  L  Q  L  I  K  L  N  L  P  P  *  F  T  H  L  *  Y  Y  I  I  T  V  F  *  R  I  I  T  R  S  G  A  S  L  V  L  A  G  F  H  H  P  S  L  K  N  N  I  F  Y  T  *  L  K  L  F  S  *  F  L  C  L  I  L  Q  I  L  N  L  L  V  K  N  S </second_frame>
            <third_frame>   F  E  S  K  Q  A  F  S  *  C  L  F  Y  Y  K  F  F  F  L  L  *  I  *  K  M  P  C  I  A  F  G  R  F  D  D  S  F  S  L  G  S  I  K  A  Y  I  A  E  F  I  S  T  L  L  F  V  F  A  G  V  G  S  A  I  A  Y  S  *  *  N  S  I  F  L  L  N  L  H  T  C  N  I  I  L  S  P  Y  F  S  V  S  *  P  G  A  E  L  A  L  C  *  L  G  F  I  T  L  R  *  K  I  I  F  F  I  H  D  *  S  Y  L  V  N  S  C  V  *  F  F  K  F  *  I  S  L  L  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0266F15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="72493" PGL_stop="78416"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74119" e_stop="76829"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="74119" e_stop="76829" e_length="2711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74119" stop="74831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74119" stop="74714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74119" stop="74644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74190" stop="74869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74190" stop="74548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74639" stop="75297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74708" stop="75469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74708" stop="75368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75111" stop="75441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75318" stop="75876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75402" stop="76191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75478" stop="76175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76039" stop="76758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76042" stop="76705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76397" stop="76829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTATCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTGGAAACCATATGCCCCAAGAAGGACACTGTATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCCTTCTCAAATGCTCTTCATGTTACTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAATAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGTAGTCTTTGGCACATCCGTTGCCCATATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATACGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAATTCTTGAAGTTGTGCCTTTAACTCTCTTAGCTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACGGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATTACAAACCAGAAGATTACCTGTGATGACAACATCTGATGTCTCCGCTTCCGACCGCCCAGGGAAAGCATAACAATGGGCCCTTTTGTTTGTTTGTCCGTTGCCCCTACCATGTTGTAATGTAGTGGATCCAGTTTGCCCATCACCCCGTCCGCTTTGATGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGTCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATGGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTAGACCCCCAACTACAGTCTGTAGTGAAGACTGAATAGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAAATCTCCTCCCTTTCGAAACCTCTTTGATGTCGATGTCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCTCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACTGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTATGTAGTAACTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAACACCCTTGAAGACTGGAGGTTTCAATTTCAAGAAATTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGACATCCATATGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGAAGGTGTTGGTGCAGAAAACACTGGAGGTGTCTGACCTTGATCAGACAACCCCCTAAGATAAGCGAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCGATTCCTCATTTTGCACTTGTTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGTTGCTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  Y  L  N  L  R  R  I  N  H  H  P  I  L  G  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  P  S  Q  M  L  F  M  L  L  L  T  F  R  V  Y  Q  Y  I  I  N  K  Y  D  H  K  *  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  R  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  T  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  Q  H  R  S  T  P  R  G  C  T  W  S  N  E  A  F  V  Q  *  F  L  K  L  C  L  *  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  Q  D  N  Q  I  Y  I  S  V  A  P  H  K  I  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  N  I  *  C  L  R  F  R  P  P  R  E  S  I  T  M  G  P  F  V  C  L  S  V  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  P  S  A  L  M  T  T  I  T  S  T  T  T  S  S  R  I  T  V  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  F  G  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  R  V  K  H  G  S  L  R  E  V  L  T  G  L  R  *  T  P  N  Y  S  L  *  *  R  L  N  R  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  I  S  S  L  S  K  P  L  *  C  R  C  H  G  E  F  I  W  L  H  S  F  H  L  Y  H  E  I  Y  H  F  L  E  G  F  C  R  S  L  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  G  G  I  P  *  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  L  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  M  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  N  T  L  E  D  W  R  F  Q  F  Q  E  I  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  D  I  H  M  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  P  K  I  S  E  N  L  I  D  H  L  *  G  R  L  G  W  R  F  L  I  L  H  L  F  S  F  P  F  L  T  L  S  Y  Y  F  F  S  R  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  S  R  G  R  P  P  T  T  S  T  T  A  S  C  R  C  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  I  S  I  L  E  G  S  T  I  T  P  S  L  E  T  I  C  P  K  K  D  T  V  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  L  L  K  C  S  S  C  Y  S  L  L  L  E  Y  I  S  I  S  S  I  N  T  I  T  N  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  V  V  F  G  T  S  V  A  H  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  I  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  N  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  S  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  R  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  F  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  K  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  L  Q  T  R  R  L  P  V  M  T  T  S  D  V  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  L  F  V  C  P  L  P  L  P  C  C  N  V  V  D  P  V  C  P  S  P  R  P  L  *  *  P  P  L  P  R  P  P  R  P  P  E  *  R  S  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  M  G  L  S  E  K  C  *  P  V  *  G  R  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  K  S  P  P  F  R  N  L  F  D  V  D  V  M  V  N  S  S  G  F  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  V  A  S  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  C  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  N  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  T  P  L  K  T  G  G  F  N  F  K  K  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  T  S  I  *  G  A  I  V  A  A  C  C  T  S  E  T  E  G  V  G  A  E  N  T  G  G  V  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  R  V  G  W  G  G  D  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  V  A  L  </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  Q  P  S  P  H  P  W  K  P  Y  A  P  R  R  T  L  Y  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  T  P  Y  F  *  S  I  S  V  Y  H  Q  *  I  R  S  Q  I  D  P  D  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  *  S  L  A  H  P  L  P  I  F  S  I  D  D  N  Q  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  Y  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  T  T  P  E  H  P  K  G  M  H  L  V  *  *  S  L  C  S  I  I  L  E  V  V  P  L  T  L  L  A  L  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  G  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  K  L  H  Q  N  H  P  F  P  R  *  P  N  L  H  K  C  C  S  P  Q  N  S  P  N  K  T  Y  I  L  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  Y  K  P  E  D  Y  L  *  *  Q  H  L  M  S  P  L  P  T  A  Q  G  K  H  N  N  G  P  F  C  L  F  V  R  C  P  Y  H  V  V  M  *  W  I  Q  F  A  H  H  P  V  R  F  D  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  S  V  W  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  *  S  Q  A  W  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  *  V  E  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  N  L  L  P  F  E  T  S  L  M  S  M  S  W  *  I  H  L  A  S  L  L  P  P  L  P  R  N  L  P  L  L  G  R  I  L  P  *  P  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  G  W  H  T  L  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  Y  V  V  T  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  N  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  K  V  L  V  Q  K  T  L  E  V  S  D  L  D  Q  T  T  P  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  F  A  L  V  Q  F  P  L  P  H  P  L  L  L  L  L  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75860" stop="76249"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLKSPPFRNLFDVDVMVNSSGFTPSTSTTKSTTSWKDFAVASTCKAEIRNSDLNPFTKRRIRSCGLKQSWVAYLDSARNLASYALTDILPCSRLKNSSLFLSLKVRGIYFSINKLENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74846" stop="75091"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIRKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75550" stop="75783"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITPSALMTTITSTTTSSRITVSTMTTSTSSYWGSITLFGTIPPNMSSLPTSITLSRVKHGSLREVLTGLR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75133" stop="75342"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHRFSITIQDRKLRRKPSHTQNYIKIIHFQDNQIYISVAPHKIHQTRPIYFFNYHRLTHRSRNTNRHIK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74422" stop="74622"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQIWLKNPVHQAHESSRGIRKTKRHHYKFVMPIPGSKSSLWHIRCPYFQLMITRSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76631" stop="76828"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISRVGWGGDSSFCTCSVSPSSPSLTTSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRPLAVAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77596" e_stop="77908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="77596" e_stop="77908" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77596" stop="77908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCATCTCAAAATAGAAATCGATATATACCAAGTAATATCATAAAATCAACTATGACACTCAACATGTAGCAACATCAAGCACTATATCATTAACAATTACCGTTAAGTTCACACATGAGGACTCAAGGCTTAATACCATAGTCATTTGGGAATTAAGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTAC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  I  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  S  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  R  L  N  T  I  V  I  W  E  L  S  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  S  Q  N  R  N  R  Y  I  P  S  N  I  I  K  S  T  M  T  L  N  M  *  Q  H  Q  A  L  Y  H  *  Q  L  P  L  S  S  H  M  R  T  Q  G  L  I  P  *  S  F  G  N  *  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y </second_frame>
            <third_frame>   *  V  D  I  I  G  H  L  K  I  E  I  D  I  Y  Q  V  I  S  *  N  Q  L  *  H  S  T  C  S  N  I  K  H  Y  I  I  N  N  Y  R  *  V  H  T  *  G  L  K  A  *  Y  H  S  H  L  G  I  K  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0266F15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="72638" e_stop="72814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="72638" e_stop="72814" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72638" stop="72814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGTCATATCGATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  V  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  S  Y  R  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  D  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0266F15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="72493" e_stop="72581"/>
            <exon e_start="73320" e_stop="73343"/>
            <exon e_start="73762" e_stop="73774"/>
            <exon e_start="77019" e_stop="77040"/>
            <exon e_start="77828" e_stop="78416"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.093" e_score="0.944"/>
          <exon-intron don_prob="0.766" acc_prob="0.850" e_score="0.542"/>
          <exon-intron don_prob="0.457" acc_prob="0.000" e_score="0.692"/>
          <exon-intron don_prob="0.769" acc_prob="0.000" e_score="0.636"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="72493" e_stop="72581" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.093">
            <gDNA_intron_boundary i_start="72582" i_stop="73319" i_length="738"/>
          </intron>
          <exon e_serial="2" e_score="0.542">
            <gDNA_exon_boundary e_start="73320" e_stop="73343" e_length="24"/>
          </exon>
          <intron i_serial="2" don_prob="0.766" acc_prob="0.850">
            <gDNA_intron_boundary i_start="73344" i_stop="73761" i_length="418"/>
          </intron>
          <exon e_serial="3" e_score="0.692">
            <gDNA_exon_boundary e_start="73762" e_stop="73774" e_length="13"/>
          </exon>
          <intron i_serial="3" don_prob="0.457" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73775" i_stop="77018" i_length="3244"/>
          </intron>
          <exon e_serial="4" e_score="0.636">
            <gDNA_exon_boundary e_start="77019" e_stop="77040" e_length="22"/>
          </exon>
          <intron i_serial="4" don_prob="0.769" acc_prob="0.000">
            <gDNA_intron_boundary i_start="77041" i_stop="77827" i_length="787"/>
          </intron>
          <exon e_serial="5" e_score="0.900">
            <gDNA_exon_boundary e_start="77828" e_stop="78416" e_length="589"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72493" stop="72581"/>
              <exon start="73320" stop="73343"/>
              <exon start="73762" stop="73774"/>
              <exon start="77019" stop="77040"/>
              <exon start="77828" stop="78416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAGTTCATTAGATTGAGTATATAAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCA : TGTTGATCAAATCATCGACGCGGG : GCTATGATGATCC : TCTTATAGCCCCTCAAAGAAAG : TGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTATTGGTTCGTGACACCCGATCCCCTAAATTTACGTGTCGATTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCTTAAATCTACATGTCGGTTCGTGACACCCGATTCCCTAAATCTACGTGTCGGTTCGTAACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAATCTCCTTCTATCAATTCATCAAGCCTTCTTTCTTACCAAGGCATCATCAATCCCATTATTTTAGTTCATCACGCCTTCTTTTATACCAAGGCCTCATTATTAACAAAGAGATTAGGATTTTGCAAGATTTGGGATTCAATAACTTTATCATGCTTATATAATCATAATTATATAATTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTATAATATTATCAATACATATCATTCGCTATTAAGATTTTACTACGAATATCGTAAGAGAAATCATAACCTACCTCCACCGAAGATTT</gDNA_template>
            <first_frame> L  S  S  L  D  *  V  Y  K  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H :   V  D  Q  I  I  D  A  G :   L  *  *  S  :  S  Y  S  P  S  K  K   : V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  I  G  S  *  H  P  I  P  *  I  Y  V  S  I  R  D  T  R  S  P  K  S  T  C  R  F  V  T  P  D  P  L  N  L  H  V  G  S  *  H  P  I  P  *  I  Y  V  S  V  R  N  T  R  S  P  K  S  T  C  R  F  V  T  P  D  P  L  I  S  F  Y  Q  F  I  K  P  S  F  L  P  R  H  H  Q  S  H  Y  F  S  S  S  R  L  L  L  Y  Q  G  L  I  I  N  K  E  I  R  I  L  Q  D  L  G  F  N  N  F  I  M  L  I  *  S  *  L  Y  N  Y  I  H  A  S  I  Q  L  S  T  *  Q  G  L  *  Y  Y  Q  Y  I  S  F  A  I  K  I  L  L  R  I  S  *  E  K  S  *  P  T  S  T  E  D   </first_frame>
            <second_frame>  *  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L   : M  L  I  K  S  S  T  R   : G  Y  D  D  P :   L  I  A  P  Q  R  K  :  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  L  V  R  D  T  R  S  P  K  F  T  C  R  F  V  T  P  D  P  L  N  L  R  V  G  S  *  H  P  I  P  *  I  Y  M  S  V  R  D  T  R  F  P  K  S  T  C  R  F  V  T  P  D  P  L  N  L  R  V  G  S  *  H  P  I  P  *  S  P  S  I  N  S  S  S  L  L  S  Y  Q  G  I  I  N  P  I  I  L  V  H  H  A  F  F  Y  T  K  A  S  L  L  T  K  R  L  G  F  C  K  I  W  D  S  I  T  L  S  C  L  Y  N  H  N  Y  I  I  T  F  M  Q  A  Y  N  *  A  H  S  R  V  Y  N  I  I  N  T  Y  H  S  L  L  R  F  Y  Y  E  Y  R  K  R  N  H  N  L  P  P  P  K  I  </second_frame>
            <third_frame>   K  F  I  R  L  S  I  *  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  :  C  *  S  N  H  R  R  G  :  A  M  M  I   : L  L  *  P  L  K  E  S :   V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  T  Y  W  F  V  T  P  D  P  L  N  L  R  V  D  S  *  H  P  I  P  *  I  Y  V  S  V  R  D  T  R  S  L  K  S  T  C  R  F  V  T  P  D  S  L  N  L  R  V  G  S  *  H  P  I  P  *  I  Y  V  S  V  R  D  T  R  S  P  N  L  L  L  S  I  H  Q  A  F  F  L  T  K  A  S  S  I  P  L  F  *  F  I  T  P  S  F  I  P  R  P  H  Y  *  Q  R  D  *  D  F  A  R  F  G  I  Q  *  L  Y  H  A  Y  I  I  I  I  I  *  L  H  S  C  K  H  T  I  K  H  I  A  G  F  I  I  L  S  I  H  I  I  R  Y  *  D  F  T  T  N  I  V  R  E  I  I  T  Y  L  H  R  R  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78043" stop="78273"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYVSVRNTRSPKSTCRFVTPDPLISFYQFIKPSFLPRHHQSHYFSSSRLLLYQGLIINKEIRILQDLGFNNFIMLI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72506" stop="72581"/>
                    <exon start="73320" stop="73343"/>
                    <exon start="73762" stop="73774"/>
                    <exon start="77019" stop="77040"/>
                    <exon start="77828" stop="77902"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEYINIFQDSLSLFLLCRYVTLRSLMLIKSSTRGYDDPLIAPQRKCRYVTLRSLIFINPLVSVRDTPIP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78113" stop="78313"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSINSSSLLSYQGIINPIILVHHAFFYTKASLLTKRLGFCKIWDSITLSCLYNHNYIITFMQAYN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="76135" PGL_stop="74691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76135" e_stop="75949"/>
            <exon e_start="75204" e_stop="74691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.936"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="76135" e_stop="75949" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75948" i_stop="75205" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="75204" e_stop="74691" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76135" stop="75949"/>
              <exon start="75204" stop="74691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGAGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTC : GATGTAATTTTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAAATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCCGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGCTAAGAGAGTTAAAGGCACAACTTCAAGAATTATTGAACAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTGTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  K  V  C  H  P  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  R  G  Y  G  K  I  L  P  R  S  G  R  F   : R  C  N  F  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  K  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  P  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  R  A  K  R  V  K  G  T  T  S  R  I  I  E  Q  R  L  H  *  T  K  C  I  P  L  G  C  S  G  V  V  C  E  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  E  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  N  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  R  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  Q  G  M  P  P  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  S  K  K  W  *  I  S :   M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  Q  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  Q  S  *  E  S  *  R  H  N  F  K  N  Y  *  T  K  A  S  L  D  Q  V  H  P  L  G  V  L  R  C  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76134" stop="75949"/>
                    <exon start="75204" stop="74692"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQVEATAKSFQEVVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTNPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFRIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="76762" PGL_stop="76209"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76762" e_stop="76209"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="76762" e_stop="76209" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76762" stop="76209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTGCAAAATGAGGAATCGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTCGCTTATCTTAGGGGGTTGTCTGATCAAGGTCAGACACCTCCAGTGTTTTCTGCACCAACACCTTCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCATATGGATGTCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAATTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGTTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGTTACTACATAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCAGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  T  S  A  K  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  G  V  V  *  S  R  S  D  T  S  S  V  F  C  T  N  T  F  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  F  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  V  T  T  *  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  E  S  P  P  Q  P  T  L  E  M  I  N  Q  V  L  A  Y  L  R  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  T  P  S  V  S  E  V  Q  H  A  A  T  M  A  P  H  M  D  V  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  N  F  L  K  L  K  P  P  V  F  K  G  V  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  Q  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  N  K  C  K  M  R  N  R  H  P  N  L  P  *  R  *  S  I  R  F  S  L  I  L  G  G  C  L  I  K  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  I  W  M  S  H  W  T  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  I  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  I  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  S  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76761" stop="76210"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVVREGEEGETEQVQNEESPPQPTLEMINQVLAYLRGLSDQGQTPPVFSAPTPSVSEVQHAATMAPHMDVSLDIGTFPRLTTGPIMTNDQHELFSNFLKLKPPVFKGVESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWQSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="77922" PGL_stop="76880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77922" e_stop="76880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="77922" e_stop="76880" e_length="1043"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77922" stop="77685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77921" stop="77444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77537" stop="76880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392027" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGAACCAATACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACTTAATTCCCAAATGACTATGGTATTAAGCCTTGAGTCCTCATGTGTGAACTTAACGGTAATTGTTAATGATATAGTGCTTGATGTTGCTACATGTTGAGTGTCATAGTTGATTTTATGATATTACTTGGTATATATCGATTTCTATTTTGAGATGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCCGCAAACGTGCCGTCATCTTTGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGCCTTGATGCCTTGAAGTTCCGGCATGGACTAGATTTTACTTGTTTTAGCTTTTTAGAATACTCTTAGCTTAGTACTTTGATCATAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTTTTATTTAATGAGTTTGAGTCTTCCGCATTATTTACTGTTGATATTATATTGAAATGTTAGAGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCACGGCCTCGATTTGGGTCGTGACAAACTTGGTATCAGAGCCATTAGGTTCGTTGGTCTCATCACAGAAGAACGAGTCTAGTAGAGTGTTAAGGAACGGTAGGGAGACGCCTTTACCTTTCTTTGAGGGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTGCGCCAACATCAAC</gDNA_template>
            <first_frame> S  R  T  N  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  D  Y  G  I  K  P  *  V  L  M  C  E  L  N  G  N  C  *  *  Y  S  A  *  C  C  Y  M  L  S  V  I  V  D  F  M  I  L  L  G  I  Y  R  F  L  F  *  D  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  L  T  Q  Q  *  L  *  P  V  F  I  T  P  D  I  R  V  S  *  C  F  *  L  G  L  D  L  P  L  H  A  L  M  P  *  S  S  G  M  D  *  I  L  L  V  L  A  F  *  N  T  L  S  L  V  L  *  S  *  M  F  L  W  *  *  L  P  D  F  G  E  *  *  M  L  N  F  R  S  *  *  I  G  F  I  *  *  V  *  V  F  R  I  I  Y  C  *  Y  Y  I  E  M  L  E  F  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  R  P  R  F  G  S  *  Q  T  W  Y  Q  S  H  *  V  R  W  S  H  H  R  R  T  S  L  V  E  C  *  G  T  V  G  R  R  L  Y  L  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  R  A  I  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  S   </first_frame>
            <second_frame>  H  E  P  I  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  L  N  S  Q  M  T  M  V  L  S  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  D  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  M  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  P  Q  T  C  R  H  L  *  L  N  S  N  S  S  Q  S  S  L  L  R  I  S  G  *  A  N  A  S  S  L  D  W  I  F  L  F  M  P  *  C  L  E  V  P  A  W  T  R  F  Y  L  F  *  L  F  R  I  L  L  A  *  Y  F  D  H  R  C  S  C  G  D  D  F  Q  I  L  G  N  N  R  C  *  I  L  E  V  N  E  L  V  L  F  N  E  F  E  S  S  A  L  F  T  V  D  I  I  L  K  C  *  S  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  H  G  L  D  L  G  R  D  K  L  G  I  R  A  I  R  F  V  G  L  I  T  E  E  R  V  *  *  S  V  K  E  R  *  G  D  A  F  T  F  L  *  G  A  I  R  L  *  E  N  S  I  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  </second_frame>
            <third_frame>   T  N  Q  Y  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  L  I  P  K  *  L  W  Y  *  A  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  C  L  M  L  L  H  V  E  C  H  S  *  F  Y  D  I  T  W  Y  I  S  I  S  I  L  R  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  R  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  H  Y  S  G  Y  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  C  L  D  A  L  K  F  R  H  G  L  D  F  T  C  F  S  F  L  E  Y  S  *  L  S  T  L  I  I  D  V  L  V  V  M  T  S  R  F  W  G  I  I  D  V  E  F  *  K  L  M  N  W  F  Y  L  M  S  L  S  L  P  H  Y  L  L  L  I  L  Y  *  N  V  R  V  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  T  A  S  I  W  V  V  T  N  L  V  S  E  P  L  G  S  L  V  S  S  Q  K  N  E  S  S  R  V  L  R  N  G  R  E  T  P  L  P  F  F  E  G  L  *  D  F  R  K  I  P  F  F  L  S  C  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  C  A  N  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77659" stop="77360"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYISISILRWPMISTQYPCFVLTPTFMFSSCLFVECRKRAVIFDSTVTLASLHYSGYQGELMLLAWTGSSSSCLDALKFRHGLDFTCFSFLEYS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="78416" PGL_stop="78013"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78416" e_stop="78013"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="78416" e_stop="78013" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78416" stop="78013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCTTCGGTGGAGGTAGGTTATGATTTCTCTTACGATATTCGTAGTAAAATCTTAATAGCGAATGATATGTATTGATAATATTATAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTATGATTATATAAGCATGATAAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTTACGAACCGACACGTAGATTTAGGGAATCGGGTGTCACGAACCGACATG</gDNA_template>
            <first_frame> K  S  S  V  E  V  G  Y  D  F  S  Y  D  I  R  S  K  I  L  I  A  N  D  M  Y  *  *  Y  Y  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  Y  D  Y  I  S  M  I  K  L  L  N  P  K  S  C  K  I  L  I  S  L  L  I  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  W  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  L  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T   </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  I  S  L  T  I  F  V  V  K  S  *  *  R  M  I  C  I  D  N  I  I  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  M  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  S  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  G  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  Y  E  P  T  R  R  F  R  E  S  G  V  T  N  R  H  </second_frame>
            <third_frame>   I  F  G  G  G  R  L  *  F  L  L  R  Y  S  *  *  N  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  K  V  I  E  S  Q  I  L  Q  N  P  N  L  F  V  N  N  E  A  L  V  *  K  K  A  *  *  T  K  I  M  G  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  N  R  V  S  R  T  D  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0266F15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="80518" PGL_stop="82720"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80518" e_stop="80691"/>
            <exon e_start="81615" e_stop="81741"/>
            <exon e_start="82001" e_stop="82520"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80518" e_stop="80691" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="0.972">
            <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81615" e_stop="81741" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="82001" e_stop="82520" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80518" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80519" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80521" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80521" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80522" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80523" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80523" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80523" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80526" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80534" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80540" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80542" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80542" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80549" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81627" stop="81741"/>
              <exon start="82001" stop="82301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81678" stop="81741"/>
              <exon start="82001" stop="82372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283548" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82006" stop="82520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82034" stop="82325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82036" stop="82301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82042" stop="82514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCCAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG : GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG : AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAATTTATCTTGCTGAAATTCTACTTCTGTCGGTTCACGTAGGTGTCAATGCCTGTTAAATGTTTTTAACTAATCTTTGTTTAGGAAGTTACTGACTTCATATTTGCTCACTGTTTAATTGAAAGGAAAAATTACTTATAAATTGCAAGGGAATT</gDNA_template>
            <first_frame> N  P  I  T  T  *  K  L  I  *  F  V  *  G  K  F  K  D  G  I  F  G  N  S  C  C  C  A  A  H  K  W  P  S  W  K  L  H  C  W  N  *  A  T  C  *  I  I  S  P  *  C  Q  V  Y  *  I  Q  :  V  C  F  C  G  C  K  V  W  *  Q  E  C  I  F  *  F  R  G  L  G  Q  H  H  W  S  V  G  L  V  W  L  R  C  T  L  T  I  Q  L  P  S   : E  Q  V  L  R  D  L  C  C  S  F  H  Q  E  R  T  V  A  *  I  L  D  T  G  R  W  L  N  S  C  I  L  Q  F  N  S  I  R  G  Y  T  T  N  *  E  R  A  A  T  S  T  Q  A  W  S  T  R  K  D  L  I  S  F  Q  S  S  F  L  N  L  H  F  V  I  D  V  S  V  V  S  L  *  V  F  L  K  P  T  T  *  D  L  C  Y  K  K  L  N  L  M  A  F  G  L  S  C  C  K  V  *  A  C  F  L  T  W  C  R  S  Y  D  I  Q  F  I  L  L  K  F  Y  F  C  R  F  T  *  V  S  M  P  V  K  C  F  *  L  I  F  V  *  E  V  T  D  F  I  F  A  H  C  L  I  E  R  K  N  Y  L  *  I  A  R  E   </first_frame>
            <second_frame>  T  Q  *  L  P  K  N  *  F  S  L  C  E  V  N  S  R  M  A  S  L  A  T  L  A  A  V  Q  P  T  S  G  L  A  G  S  S  I  A  G  T  K  L  H  V  K  S  S  R  L  N  V  K  S  T  K  S  R :   S  A  S  V  V  A  K  Y  G  D  K  S  V  Y  F  D  L  E  D  L  G  N  T  T  G  Q  W  D  L  Y  G  S  D  A  P  S  P  Y  N  S  L  Q  :  S  K  F  F  E  T  F  A  A  P  F  T  K  R  G  L  L  L  K  F  L  I  L  G  G  G  S  T  L  A  Y  F  S  S  T  A  S  G  D  I  L  P  I  K  K  G  P  Q  L  P  P  K  L  G  P  R  G  K  I  *  F  L  F  N  Q  A  F  S  T  F  I  L  *  L  M  Y  L  S  S  A  C  K  Y  S  *  S  L  Q  H  E  T  F  V  T  R  S  *  I  L  W  H  S  V  Y  P  V  A  K  F  E  L  V  F  *  H  G  V  D  L  M  T  F  N  L  S  C  *  N  S  T  S  V  G  S  R  R  C  Q  C  L  L  N  V  F  N  *  S  L  F  R  K  L  L  T  S  Y  L  L  T  V  *  L  K  G  K  I  T  Y  K  L  Q  G  N  </second_frame>
            <third_frame>   P  N  N  Y  L  K  T  N  L  V  C  V  R  *  I  Q  G  W  H  L  W  Q  L  L  L  L  C  S  P  Q  V  A  *  L  E  A  P  L  L  E  L  S  Y  M  L  N  H  L  A  L  M  S  S  L  L  N  P   : G  L  L  L  W  L  Q  S  M  V  T  R  V  Y  I  L  I  *  R  T  W  A  T  P  L  V  S  G  T  C  M  A  Q  M  H  P  H  H  T  T  P  F  R :   A  S  S  S  R  P  L  L  L  L  S  P  R  E  D  C  C  L  N  S  *  Y  W  E  V  A  Q  L  L  H  T  S  V  Q  Q  H  Q  G  I  Y  Y  Q  L  R  K  G  R  N  F  H  P  S  L  V  H  A  E  R  S  N  F  F  S  I  K  L  S  Q  P  S  F  C  N  *  C  I  C  R  Q  L  V  S  I  L  E  A  Y  N  M  R  P  L  L  Q  E  V  K  S  Y  G  I  R  F  I  L  L  Q  S  L  S  L  F  S  N  M  V  S  I  L  *  H  S  I  Y  L  A  E  I  L  L  L  S  V  H  V  G  V  N  A  C  *  M  F  L  T  N  L  C  L  G  S  Y  *  L  H  I  C  S  L  F  N  *  K  E  K  L  L  I  N  C  K  G  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80543" stop="80691"/>
                    <exon start="81615" stop="81741"/>
                    <exon start="82001" stop="82180"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLCEVNSRMASLATLAAVQPTSGLAGSSIAGTKLHVKSSRLNVKSTKSRSASVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSSTASGDILPIKKGPQLPPKLGPRGKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="80518" e_stop="80691"/>
            <exon e_start="81615" e_stop="81741"/>
            <exon e_start="82001" e_stop="82382"/>
            <exon e_start="82670" e_stop="82720"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.808" e_score="1.000"/>
          <exon-only e_score="0.412"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80518" e_stop="80691" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="0.972">
            <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81615" e_stop="81741" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82001" e_stop="82382" e_length="382"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.808">
            <gDNA_intron_boundary i_start="82383" i_stop="82669" i_length="287"/>
          </intron>
          <exon e_serial="4" e_score="0.412">
            <gDNA_exon_boundary e_start="82670" e_stop="82720" e_length="51"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80518" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80519" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80521" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82382"/>
              <exon start="82670" stop="82720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80521" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80521" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80522" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80523" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80523" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80523" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80526" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80534" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80540" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80542" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80549" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81627" stop="81741"/>
              <exon start="82001" stop="82301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81678" stop="81741"/>
              <exon start="82001" stop="82372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283548" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82034" stop="82325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82036" stop="82301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCCAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG : GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG : AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCAATTTATCTTGCTGAA : AGTAAATCATTTCAAAAAGCGTGACACCAGCAGTCCTATACTAACTATATA</gDNA_template>
            <first_frame> N  P  I  T  T  *  K  L  I  *  F  V  *  G  K  F  K  D  G  I  F  G  N  S  C  C  C  A  A  H  K  W  P  S  W  K  L  H  C  W  N  *  A  T  C  *  I  I  S  P  *  C  Q  V  Y  *  I  Q  :  V  C  F  C  G  C  K  V  W  *  Q  E  C  I  F  *  F  R  G  L  G  Q  H  H  W  S  V  G  L  V  W  L  R  C  T  L  T  I  Q  L  P  S   : E  Q  V  L  R  D  L  C  C  S  F  H  Q  E  R  T  V  A  *  I  L  D  T  G  R  W  L  N  S  C  I  L  Q  F  N  S  I  R  G  Y  T  T  N  *  E  R  A  A  T  S  T  Q  A  W  S  T  R  K  D  L  I  S  F  Q  S  S  F  L  N  L  H  F  V  I  D  V  S  V  V  S  L  *  V  F  L  K  P  T  T  *  D  L  C  Y  K  K  L  N  L  M  A  F  G  L  S  C  C  K  V  *  A  C  F  L  T  W  C  R  S  Y  D  I  Q  F  I  L  L  K :   V  N  H  F  K  K  R  D  T  S  S  P  I  L  T  I   </first_frame>
            <second_frame>  T  Q  *  L  P  K  N  *  F  S  L  C  E  V  N  S  R  M  A  S  L  A  T  L  A  A  V  Q  P  T  S  G  L  A  G  S  S  I  A  G  T  K  L  H  V  K  S  S  R  L  N  V  K  S  T  K  S  R :   S  A  S  V  V  A  K  Y  G  D  K  S  V  Y  F  D  L  E  D  L  G  N  T  T  G  Q  W  D  L  Y  G  S  D  A  P  S  P  Y  N  S  L  Q  :  S  K  F  F  E  T  F  A  A  P  F  T  K  R  G  L  L  L  K  F  L  I  L  G  G  G  S  T  L  A  Y  F  S  S  T  A  S  G  D  I  L  P  I  K  K  G  P  Q  L  P  P  K  L  G  P  R  G  K  I  *  F  L  F  N  Q  A  F  S  T  F  I  L  *  L  M  Y  L  S  S  A  C  K  Y  S  *  S  L  Q  H  E  T  F  V  T  R  S  *  I  L  W  H  S  V  Y  P  V  A  K  F  E  L  V  F  *  H  G  V  D  L  M  T  F  N  L  S  C  *   : K  *  I  I  S  K  S  V  T  P  A  V  L  Y  *  L  Y  </second_frame>
            <third_frame>   P  N  N  Y  L  K  T  N  L  V  C  V  R  *  I  Q  G  W  H  L  W  Q  L  L  L  L  C  S  P  Q  V  A  *  L  E  A  P  L  L  E  L  S  Y  M  L  N  H  L  A  L  M  S  S  L  L  N  P   : G  L  L  L  W  L  Q  S  M  V  T  R  V  Y  I  L  I  *  R  T  W  A  T  P  L  V  S  G  T  C  M  A  Q  M  H  P  H  H  T  T  P  F  R :   A  S  S  S  R  P  L  L  L  L  S  P  R  E  D  C  C  L  N  S  *  Y  W  E  V  A  Q  L  L  H  T  S  V  Q  Q  H  Q  G  I  Y  Y  Q  L  R  K  G  R  N  F  H  P  S  L  V  H  A  E  R  S  N  F  F  S  I  K  L  S  Q  P  S  F  C  N  *  C  I  C  R  Q  L  V  S  I  L  E  A  Y  N  M  R  P  L  L  Q  E  V  K  S  Y  G  I  R  F  I  L  L  Q  S  L  S  L  F  S  N  M  V  S  I  L  *  H  S  I  Y  L  A  E  :  S  K  S  F  Q  K  A  *  H  Q  Q  S  Y  T  N  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80543" stop="80691"/>
                    <exon start="81615" stop="81741"/>
                    <exon start="82001" stop="82180"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLCEVNSRMASLATLAAVQPTSGLAGSSIAGTKLHVKSSRLNVKSTKSRSASVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSSTASGDILPIKKGPQLPPKLGPRGKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="80518" e_stop="80691"/>
            <exon e_start="81615" e_stop="81741"/>
            <exon e_start="82001" e_stop="82329"/>
            <exon e_start="82574" e_stop="82605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.333" e_score="1.000"/>
          <exon-only e_score="0.469"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80518" e_stop="80691" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="0.972">
            <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81615" e_stop="81741" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82001" e_stop="82329" e_length="329"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.333">
            <gDNA_intron_boundary i_start="82330" i_stop="82573" i_length="244"/>
          </intron>
          <exon e_serial="4" e_score="0.469">
            <gDNA_exon_boundary e_start="82574" e_stop="82605" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80518" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80519" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80522" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80523" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80534" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80540" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80549" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81627" stop="81741"/>
              <exon start="82001" stop="82301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82033" stop="82329"/>
              <exon start="82574" stop="82605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82034" stop="82325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82036" stop="82301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCCAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG : GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG : AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGA : ATTACAAAACTCTCTTAGAAGAGGCAATACAA</gDNA_template>
            <first_frame> N  P  I  T  T  *  K  L  I  *  F  V  *  G  K  F  K  D  G  I  F  G  N  S  C  C  C  A  A  H  K  W  P  S  W  K  L  H  C  W  N  *  A  T  C  *  I  I  S  P  *  C  Q  V  Y  *  I  Q  :  V  C  F  C  G  C  K  V  W  *  Q  E  C  I  F  *  F  R  G  L  G  Q  H  H  W  S  V  G  L  V  W  L  R  C  T  L  T  I  Q  L  P  S   : E  Q  V  L  R  D  L  C  C  S  F  H  Q  E  R  T  V  A  *  I  L  D  T  G  R  W  L  N  S  C  I  L  Q  F  N  S  I  R  G  Y  T  T  N  *  E  R  A  A  T  S  T  Q  A  W  S  T  R  K  D  L  I  S  F  Q  S  S  F  L  N  L  H  F  V  I  D  V  S  V  V  S  L  *  V  F  L  K  P  T  T  *  D  L  C  Y  K  K  L  N  L  M  A  F  G  L  S  C  C  K  V  *  :  I  T  K  L  S  *  K  R  Q  Y   </first_frame>
            <second_frame>  T  Q  *  L  P  K  N  *  F  S  L  C  E  V  N  S  R  M  A  S  L  A  T  L  A  A  V  Q  P  T  S  G  L  A  G  S  S  I  A  G  T  K  L  H  V  K  S  S  R  L  N  V  K  S  T  K  S  R :   S  A  S  V  V  A  K  Y  G  D  K  S  V  Y  F  D  L  E  D  L  G  N  T  T  G  Q  W  D  L  Y  G  S  D  A  P  S  P  Y  N  S  L  Q  :  S  K  F  F  E  T  F  A  A  P  F  T  K  R  G  L  L  L  K  F  L  I  L  G  G  G  S  T  L  A  Y  F  S  S  T  A  S  G  D  I  L  P  I  K  K  G  P  Q  L  P  P  K  L  G  P  R  G  K  I  *  F  L  F  N  Q  A  F  S  T  F  I  L  *  L  M  Y  L  S  S  A  C  K  Y  S  *  S  L  Q  H  E  T  F  V  T  R  S  *  I  L  W  H  S  V  Y  P  V  A  K  F  E :   L  Q  N  S  L  R  R  G  N  T  </second_frame>
            <third_frame>   P  N  N  Y  L  K  T  N  L  V  C  V  R  *  I  Q  G  W  H  L  W  Q  L  L  L  L  C  S  P  Q  V  A  *  L  E  A  P  L  L  E  L  S  Y  M  L  N  H  L  A  L  M  S  S  L  L  N  P   : G  L  L  L  W  L  Q  S  M  V  T  R  V  Y  I  L  I  *  R  T  W  A  T  P  L  V  S  G  T  C  M  A  Q  M  H  P  H  H  T  T  P  F  R :   A  S  S  S  R  P  L  L  L  L  S  P  R  E  D  C  C  L  N  S  *  Y  W  E  V  A  Q  L  L  H  T  S  V  Q  Q  H  Q  G  I  Y  Y  Q  L  R  K  G  R  N  F  H  P  S  L  V  H  A  E  R  S  N  F  F  S  I  K  L  S  Q  P  S  F  C  N  *  C  I  C  R  Q  L  V  S  I  L  E  A  Y  N  M  R  P  L  L  Q  E  V  K  S  Y  G  I  R  F  I  L  L  Q  S  L   : N  Y  K  T  L  L  E  E  A  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80543" stop="80691"/>
                    <exon start="81615" stop="81741"/>
                    <exon start="82001" stop="82180"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLCEVNSRMASLATLAAVQPTSGLAGSSIAGTKLHVKSSRLNVKSTKSRSASVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSSTASGDILPIKKGPQLPPKLGPRGKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="80518" e_stop="80691"/>
            <exon e_start="81615" e_stop="81741"/>
            <exon e_start="82001" e_stop="82323"/>
            <exon e_start="82574" e_stop="82606"/>
            <exon e_start="82670" e_stop="82675"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.333" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.808" e_score="0.485"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80518" e_stop="80691" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="0.972">
            <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81615" e_stop="81741" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82001" e_stop="82323" e_length="323"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.333">
            <gDNA_intron_boundary i_start="82324" i_stop="82573" i_length="250"/>
          </intron>
          <exon e_serial="4" e_score="0.485">
            <gDNA_exon_boundary e_start="82574" e_stop="82606" e_length="33"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.808">
            <gDNA_intron_boundary i_start="82607" i_stop="82669" i_length="63"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="82670" e_stop="82675" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80518" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80519" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80523" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80534" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80540" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80549" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81627" stop="81741"/>
              <exon start="82001" stop="82301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82034" stop="82323"/>
              <exon start="82574" stop="82606"/>
              <exon start="82670" stop="82675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82036" stop="82301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCCAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG : GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG : AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAA : ATTACAAAACTCTCTTAGAAGAGGCAATACAAG : AGTAAA</gDNA_template>
            <first_frame> N  P  I  T  T  *  K  L  I  *  F  V  *  G  K  F  K  D  G  I  F  G  N  S  C  C  C  A  A  H  K  W  P  S  W  K  L  H  C  W  N  *  A  T  C  *  I  I  S  P  *  C  Q  V  Y  *  I  Q  :  V  C  F  C  G  C  K  V  W  *  Q  E  C  I  F  *  F  R  G  L  G  Q  H  H  W  S  V  G  L  V  W  L  R  C  T  L  T  I  Q  L  P  S   : E  Q  V  L  R  D  L  C  C  S  F  H  Q  E  R  T  V  A  *  I  L  D  T  G  R  W  L  N  S  C  I  L  Q  F  N  S  I  R  G  Y  T  T  N  *  E  R  A  A  T  S  T  Q  A  W  S  T  R  K  D  L  I  S  F  Q  S  S  F  L  N  L  H  F  V  I  D  V  S  V  V  S  L  *  V  F  L  K  P  T  T  *  D  L  C  Y  K  K  L  N  L  M  A  F  G  L  S  C  C  K  :  I  T  K  L  S  *  K  R  Q  Y  K  :  S  K </first_frame>
            <second_frame>  T  Q  *  L  P  K  N  *  F  S  L  C  E  V  N  S  R  M  A  S  L  A  T  L  A  A  V  Q  P  T  S  G  L  A  G  S  S  I  A  G  T  K  L  H  V  K  S  S  R  L  N  V  K  S  T  K  S  R :   S  A  S  V  V  A  K  Y  G  D  K  S  V  Y  F  D  L  E  D  L  G  N  T  T  G  Q  W  D  L  Y  G  S  D  A  P  S  P  Y  N  S  L  Q  :  S  K  F  F  E  T  F  A  A  P  F  T  K  R  G  L  L  L  K  F  L  I  L  G  G  G  S  T  L  A  Y  F  S  S  T  A  S  G  D  I  L  P  I  K  K  G  P  Q  L  P  P  K  L  G  P  R  G  K  I  *  F  L  F  N  Q  A  F  S  T  F  I  L  *  L  M  Y  L  S  S  A  C  K  Y  S  *  S  L  Q  H  E  T  F  V  T  R  S  *  I  L  W  H  S  V  Y  P  V  A  K :   L  Q  N  S  L  R  R  G  N  T  R :   V   </second_frame>
            <third_frame>   P  N  N  Y  L  K  T  N  L  V  C  V  R  *  I  Q  G  W  H  L  W  Q  L  L  L  L  C  S  P  Q  V  A  *  L  E  A  P  L  L  E  L  S  Y  M  L  N  H  L  A  L  M  S  S  L  L  N  P   : G  L  L  L  W  L  Q  S  M  V  T  R  V  Y  I  L  I  *  R  T  W  A  T  P  L  V  S  G  T  C  M  A  Q  M  H  P  H  H  T  T  P  F  R :   A  S  S  S  R  P  L  L  L  L  S  P  R  E  D  C  C  L  N  S  *  Y  W  E  V  A  Q  L  L  H  T  S  V  Q  Q  H  Q  G  I  Y  Y  Q  L  R  K  G  R  N  F  H  P  S  L  V  H  A  E  R  S  N  F  F  S  I  K  L  S  Q  P  S  F  C  N  *  C  I  C  R  Q  L  V  S  I  L  E  A  Y  N  M  R  P  L  L  Q  E  V  K  S  Y  G  I  R  F  I  L  L  Q   : N  Y  K  T  L  L  E  E  A  I  Q   : E  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80543" stop="80691"/>
                    <exon start="81615" stop="81741"/>
                    <exon start="82001" stop="82180"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLCEVNSRMASLATLAAVQPTSGLAGSSIAGTKLHVKSSRLNVKSTKSRSASVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSSTASGDILPIKKGPQLPPKLGPRGKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="80518" e_stop="80691"/>
            <exon e_start="81615" e_stop="81741"/>
            <exon e_start="82001" e_stop="82323"/>
            <exon e_start="82670" e_stop="82687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.808" e_score="1.000"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80518" e_stop="80691" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="0.972">
            <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81615" e_stop="81741" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82001" e_stop="82323" e_length="323"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.808">
            <gDNA_intron_boundary i_start="82324" i_stop="82669" i_length="346"/>
          </intron>
          <exon e_serial="4" e_score="0.556">
            <gDNA_exon_boundary e_start="82670" e_stop="82687" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80518" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80519" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80523" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80525" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82323"/>
              <exon start="82670" stop="82687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80534" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80540" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80549" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81627" stop="81741"/>
              <exon start="82001" stop="82301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82036" stop="82301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCCAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG : GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG : AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAA : AGTAAATCATTTCAAAAA</gDNA_template>
            <first_frame> N  P  I  T  T  *  K  L  I  *  F  V  *  G  K  F  K  D  G  I  F  G  N  S  C  C  C  A  A  H  K  W  P  S  W  K  L  H  C  W  N  *  A  T  C  *  I  I  S  P  *  C  Q  V  Y  *  I  Q  :  V  C  F  C  G  C  K  V  W  *  Q  E  C  I  F  *  F  R  G  L  G  Q  H  H  W  S  V  G  L  V  W  L  R  C  T  L  T  I  Q  L  P  S   : E  Q  V  L  R  D  L  C  C  S  F  H  Q  E  R  T  V  A  *  I  L  D  T  G  R  W  L  N  S  C  I  L  Q  F  N  S  I  R  G  Y  T  T  N  *  E  R  A  A  T  S  T  Q  A  W  S  T  R  K  D  L  I  S  F  Q  S  S  F  L  N  L  H  F  V  I  D  V  S  V  V  S  L  *  V  F  L  K  P  T  T  *  D  L  C  Y  K  K  L  N  L  M  A  F  G  L  S  C  C  K  :  S  K  S  F  Q  K </first_frame>
            <second_frame>  T  Q  *  L  P  K  N  *  F  S  L  C  E  V  N  S  R  M  A  S  L  A  T  L  A  A  V  Q  P  T  S  G  L  A  G  S  S  I  A  G  T  K  L  H  V  K  S  S  R  L  N  V  K  S  T  K  S  R :   S  A  S  V  V  A  K  Y  G  D  K  S  V  Y  F  D  L  E  D  L  G  N  T  T  G  Q  W  D  L  Y  G  S  D  A  P  S  P  Y  N  S  L  Q  :  S  K  F  F  E  T  F  A  A  P  F  T  K  R  G  L  L  L  K  F  L  I  L  G  G  G  S  T  L  A  Y  F  S  S  T  A  S  G  D  I  L  P  I  K  K  G  P  Q  L  P  P  K  L  G  P  R  G  K  I  *  F  L  F  N  Q  A  F  S  T  F  I  L  *  L  M  Y  L  S  S  A  C  K  Y  S  *  S  L  Q  H  E  T  F  V  T  R  S  *  I  L  W  H  S  V  Y  P  V  A  K :   V  N  H  F  K   </second_frame>
            <third_frame>   P  N  N  Y  L  K  T  N  L  V  C  V  R  *  I  Q  G  W  H  L  W  Q  L  L  L  L  C  S  P  Q  V  A  *  L  E  A  P  L  L  E  L  S  Y  M  L  N  H  L  A  L  M  S  S  L  L  N  P   : G  L  L  L  W  L  Q  S  M  V  T  R  V  Y  I  L  I  *  R  T  W  A  T  P  L  V  S  G  T  C  M  A  Q  M  H  P  H  H  T  T  P  F  R :   A  S  S  S  R  P  L  L  L  L  S  P  R  E  D  C  C  L  N  S  *  Y  W  E  V  A  Q  L  L  H  T  S  V  Q  Q  H  Q  G  I  Y  Y  Q  L  R  K  G  R  N  F  H  P  S  L  V  H  A  E  R  S  N  F  F  S  I  K  L  S  Q  P  S  F  C  N  *  C  I  C  R  Q  L  V  S  I  L  E  A  Y  N  M  R  P  L  L  Q  E  V  K  S  Y  G  I  R  F  I  L  L  Q   : K  *  I  I  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80543" stop="80691"/>
                    <exon start="81615" stop="81741"/>
                    <exon start="82001" stop="82180"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLCEVNSRMASLATLAAVQPTSGLAGSSIAGTKLHVKSSRLNVKSTKSRSASVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSSTASGDILPIKKGPQLPPKLGPRGKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="80518" e_stop="80691"/>
            <exon e_start="81615" e_stop="81741"/>
            <exon e_start="82001" e_stop="82315"/>
            <exon e_start="82670" e_stop="82688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.808" e_score="1.000"/>
          <exon-only e_score="0.526"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80518" e_stop="80691" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="0.972">
            <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81615" e_stop="81741" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82001" e_stop="82315" e_length="315"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.808">
            <gDNA_intron_boundary i_start="82316" i_stop="82669" i_length="354"/>
          </intron>
          <exon e_serial="4" e_score="0.526">
            <gDNA_exon_boundary e_start="82670" e_stop="82688" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80518" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80531" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82315"/>
              <exon start="82670" stop="82688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80534" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80540" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80549" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81627" stop="81741"/>
              <exon start="82001" stop="82301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82036" stop="82301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCCAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG : GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG : AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCT : AGTAAATCATTTCAAAAAG</gDNA_template>
            <first_frame> N  P  I  T  T  *  K  L  I  *  F  V  *  G  K  F  K  D  G  I  F  G  N  S  C  C  C  A  A  H  K  W  P  S  W  K  L  H  C  W  N  *  A  T  C  *  I  I  S  P  *  C  Q  V  Y  *  I  Q  :  V  C  F  C  G  C  K  V  W  *  Q  E  C  I  F  *  F  R  G  L  G  Q  H  H  W  S  V  G  L  V  W  L  R  C  T  L  T  I  Q  L  P  S   : E  Q  V  L  R  D  L  C  C  S  F  H  Q  E  R  T  V  A  *  I  L  D  T  G  R  W  L  N  S  C  I  L  Q  F  N  S  I  R  G  Y  T  T  N  *  E  R  A  A  T  S  T  Q  A  W  S  T  R  K  D  L  I  S  F  Q  S  S  F  L  N  L  H  F  V  I  D  V  S  V  V  S  L  *  V  F  L  K  P  T  T  *  D  L  C  Y  K  K  L  N  L  M  A  F  G  L  S   : *  *  I  I  S  K   </first_frame>
            <second_frame>  T  Q  *  L  P  K  N  *  F  S  L  C  E  V  N  S  R  M  A  S  L  A  T  L  A  A  V  Q  P  T  S  G  L  A  G  S  S  I  A  G  T  K  L  H  V  K  S  S  R  L  N  V  K  S  T  K  S  R :   S  A  S  V  V  A  K  Y  G  D  K  S  V  Y  F  D  L  E  D  L  G  N  T  T  G  Q  W  D  L  Y  G  S  D  A  P  S  P  Y  N  S  L  Q  :  S  K  F  F  E  T  F  A  A  P  F  T  K  R  G  L  L  L  K  F  L  I  L  G  G  G  S  T  L  A  Y  F  S  S  T  A  S  G  D  I  L  P  I  K  K  G  P  Q  L  P  P  K  L  G  P  R  G  K  I  *  F  L  F  N  Q  A  F  S  T  F  I  L  *  L  M  Y  L  S  S  A  C  K  Y  S  *  S  L  Q  H  E  T  F  V  T  R  S  *  I  L  W  H  S  V  Y  P  :  S  K  S  F  Q  K  </second_frame>
            <third_frame>   P  N  N  Y  L  K  T  N  L  V  C  V  R  *  I  Q  G  W  H  L  W  Q  L  L  L  L  C  S  P  Q  V  A  *  L  E  A  P  L  L  E  L  S  Y  M  L  N  H  L  A  L  M  S  S  L  L  N  P   : G  L  L  L  W  L  Q  S  M  V  T  R  V  Y  I  L  I  *  R  T  W  A  T  P  L  V  S  G  T  C  M  A  Q  M  H  P  H  H  T  T  P  F  R :   A  S  S  S  R  P  L  L  L  L  S  P  R  E  D  C  C  L  N  S  *  Y  W  E  V  A  Q  L  L  H  T  S  V  Q  Q  H  Q  G  I  Y  Y  Q  L  R  K  G  R  N  F  H  P  S  L  V  H  A  E  R  S  N  F  F  S  I  K  L  S  Q  P  S  F  C  N  *  C  I  C  R  Q  L  V  S  I  L  E  A  Y  N  M  R  P  L  L  Q  E  V  K  S  Y  G  I  R  F  I  L :   V  N  H  F  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80543" stop="80691"/>
                    <exon start="81615" stop="81741"/>
                    <exon start="82001" stop="82180"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLCEVNSRMASLATLAAVQPTSGLAGSSIAGTKLHVKSSRLNVKSTKSRSASVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSSTASGDILPIKKGPQLPPKLGPRGKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="83264" PGL_stop="82907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83264" e_stop="82907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="83264" e_stop="82907" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83264" stop="82907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746682" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTATTTTAGAAAGCTATTCAAGAATAATAGAGAGCAGGGCGCACACAGTGATGTCACGGATTGAAGATGTTCTCCAAGTAGATGCTACGGCCCAAAATCCTTCCTGTGCTGATCTGAAGAGGTCTCCTTTAAGAGATTCACTACGGGTATCACCATCAGGCAGCTTCCCAAATGCTAGGGAAGAAGTAGAAAAGCTTAACGCTGCAGAGAATCCAACGTCAATGACATTGTTGGATTTCATGGGTTGGACAGTAGAACAAGGAGATAATGACACAAAGAAAGATGTGAAGGAGGATATAGACGTCGATGCAAAGAAACCACCTAGTATAGTTACAAACAAGAAACTTTCTTACTTAG</gDNA_template>
            <first_frame> A  I  L  E  S  Y  S  R  I  I  E  S  R  A  H  T  V  M  S  R  I  E  D  V  L  Q  V  D  A  T  A  Q  N  P  S  C  A  D  L  K  R  S  P  L  R  D  S  L  R  V  S  P  S  G  S  F  P  N  A  R  E  E  V  E  K  L  N  A  A  E  N  P  T  S  M  T  L  L  D  F  M  G  W  T  V  E  Q  G  D  N  D  T  K  K  D  V  K  E  D  I  D  V  D  A  K  K  P  P  S  I  V  T  N  K  K  L  S  Y  L  </first_frame>
            <second_frame>  L  F  *  K  A  I  Q  E  *  *  R  A  G  R  T  Q  *  C  H  G  L  K  M  F  S  K  *  M  L  R  P  K  I  L  P  V  L  I  *  R  G  L  L  *  E  I  H  Y  G  Y  H  H  Q  A  A  S  Q  M  L  G  K  K  *  K  S  L  T  L  Q  R  I  Q  R  Q  *  H  C  W  I  S  W  V  G  Q  *  N  K  E  I  M  T  Q  R  K  M  *  R  R  I  *  T  S  M  Q  R  N  H  L  V  *  L  Q  T  R  N  F  L  T  * </second_frame>
            <third_frame>   Y  F  R  K  L  F  K  N  N  R  E  Q  G  A  H  S  D  V  T  D  *  R  C  S  P  S  R  C  Y  G  P  K  S  F  L  C  *  S  E  E  V  S  F  K  R  F  T  T  G  I  T  I  R  Q  L  P  K  C  *  G  R  S  R  K  A  *  R  C  R  E  S  N  V  N  D  I  V  G  F  H  G  L  D  S  R  T  R  R  *  *  H  K  E  R  C  E  G  G  Y  R  R  R  C  K  E  T  T  *  Y  S  Y  K  Q  E  T  F  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83264" stop="82908"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AILESYSRIIESRAHTVMSRIEDVLQVDATAQNPSCADLKRSPLRDSLRVSPSGSFPNAREEVEKLNAAENPTSMTLLDFMGWTVEQGDNDTKKDVKEDIDVDAKKPPSIVTNKKLSYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="85495" PGL_stop="84907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85495" e_stop="85143"/>
            <exon e_start="85006" e_stop="84907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="0.966"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="85495" e_stop="85143" e_length="353"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="85142" i_stop="85007" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="85006" e_stop="84907" e_length="100"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85495" stop="85227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85493" stop="85143"/>
              <exon start="85006" stop="84907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85428" stop="85143"/>
              <exon start="85006" stop="84907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTAATTTTCCTTCTTTTCACCTCCTCTTTATATCCGTTTCCTCAAGAACAATTATATCTATTGCATTGTCACTAGTGTAACATACCTATTTCAATTCAGCTTGAATCAAAAAGATGGTTCGAGCAGCGCTTGAGGAAGCGAAAGAAATGTGCAAGGCAAAGTTGTTGCATTTCAAAGGAAAATCTGAAGATGTTATTATTGAGACTAGTAATACTAGTGACTCTGGGGATGAATTGGCCACATCGAAAAGTGAAGATCAGCCTGTGTTTAGTCGCAGTGAGTCTGTTATGATGCGACCAAACGAGACCCCTGTTGTCTCTAGCCCACCCGCGAAACAGGGCCCACCTTCAG : ATATGGAGCTGATGAGGGAAAAATTTGCAAAGTTGTTGCTTGGCGAGGATATGTCTGGTGGAGGAAAGGGTGTGTCTTCTGCGTTGGCATTGTCAAACGC</gDNA_template>
            <first_frame> H  *  F  S  F  F  S  P  P  L  Y  I  R  F  L  K  N  N  Y  I  Y  C  I  V  T  S  V  T  Y  L  F  Q  F  S  L  N  Q  K  D  G  S  S  S  A  *  G  S  E  R  N  V  Q  G  K  V  V  A  F  Q  R  K  I  *  R  C  Y  Y  *  D  *  *  Y  *  *  L  W  G  *  I  G  H  I  E  K  *  R  S  A  C  V  *  S  Q  *  V  C  Y  D  A  T  K  R  D  P  C  C  L  *  P  T  R  E  T  G  P  T  F  R :   Y  G  A  D  E  G  K  I  C  K  V  V  A  W  R  G  Y  V  W  W  R  K  G  C  V  F  C  V  G  I  V  K  R </first_frame>
            <second_frame>  I  N  F  P  S  F  H  L  L  F  I  S  V  S  S  R  T  I  I  S  I  A  L  S  L  V  *  H  T  Y  F  N  S  A  *  I  K  K  M  V  R  A  A  L  E  E  A  K  E  M  C  K  A  K  L  L  H  F  K  G  K  S  E  D  V  I  I  E  T  S  N  T  S  D  S  G  D  E  L  A  T  S  K  S  E  D  Q  P  V  F  S  R  S  E  S  V  M  M  R  P  N  E  T  P  V  V  S  S  P  P  A  K  Q  G  P  P  S   : D  M  E  L  M  R  E  K  F  A  K  L  L  L  G  E  D  M  S  G  G  G  K  G  V  S  S  A  L  A  L  S  N   </second_frame>
            <third_frame>   L  I  F  L  L  F  T  S  S  L  Y  P  F  P  Q  E  Q  L  Y  L  L  H  C  H  *  C  N  I  P  I  S  I  Q  L  E  S  K  R  W  F  E  Q  R  L  R  K  R  K  K  C  A  R  Q  S  C  C  I  S  K  E  N  L  K  M  L  L  L  R  L  V  I  L  V  T  L  G  M  N  W  P  H  R  K  V  K  I  S  L  C  L  V  A  V  S  L  L  *  C  D  Q  T  R  P  L  L  S  L  A  H  P  R  N  R  A  H  L  Q  :  I  W  S  *  *  G  K  N  L  Q  S  C  C  L  A  R  I  C  L  V  E  E  R  V  C  L  L  R  W  H  C  Q  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85389" stop="85143"/>
                    <exon start="85006" stop="84909"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKKMVRAALEEAKEMCKAKLLHFKGKSEDVIIETSNTSDSGDELATSKSEDQPVFSRSESVMMRPNETPVVSSPPAKQGPPSDMELMREKFAKLLLGEDMSGGGKGVSSALALSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="89309" PGL_stop="90379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89309" e_stop="89747"/>
            <exon e_start="89989" e_stop="90379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="0.993"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="89309" e_stop="89747" e_length="439"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="89748" i_stop="89988" i_length="241"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="89989" e_stop="90379" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89309" stop="89747"/>
              <exon start="89989" stop="90379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737259" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCATATAGAAGAAAAATGGAATCTATAGGAGTACTAATGGCGTGTCCAATGTCATCATACTTAGAACAACAACTCGATAATCGATTCAACCTCATACGTTACTGGAACTTCTCCGATAAGAAACAATTCATCAACGACTACGCTCATTCAATACGTGCTGTTGTGGGAAACGCTGCTGCTGGTGCTGATGCAGAGCTTATCGAGGCGTTGCCTCAGCTAGAAATTGTGGCTAGTTTCAGTGTTGGTTTAGATAAGATTGATTTGAACAAGTGTAAAGAGAAGGGTATTAGAGTGACTAATACACCAGATGTGTTAACTGAGGATGTTGCTGATCTTGCTATTGGATTAATATTGGCTGTGCTAAGGAGGATTTGCGAGTCTGATCGATATGTGAAGAAGGGATTGTGGAAGGCTGGTGATTTCGCGTTGACTTCTAAG : TTTAGTGGCAAAAGAGTTGGTATCATAGGATTAGGGAGGATTGGCTTAGCAATTGCAAAGAGAGCAGAGGCTTTTGATTGTCCAATCAGTTACTACGCGCGATCAGAAAAGACAAATACGAATTACAAATACTATCCAACTGTAGTAGAACTCGCTACCAATTGTGAGATCCTGGTTGTGGCGTGTGCACTAACTCCTGAGACTCGTTACGTTGTCAACCGCGAAGTGATTGATGCATTAGGTGCAAAAGGGATTCTTATCAACATTGGAAGGGGACCTCATGTTGATGAAAAAGAGATGGTATCTTCTCTTCTTGATGGTCGATTAGGGGGCGCTGGCCTTGATGTGTTTGAGAATGAACCTGAAGTCCCTGATAATCTGTTCGGCCTTG</gDNA_template>
            <first_frame> P  I  *  K  K  N  G  I  Y  R  S  T  N  G  V  S  N  V  I  I  L  R  T  T  T  R  *  S  I  Q  P  H  T  L  L  E  L  L  R  *  E  T  I  H  Q  R  L  R  S  F  N  T  C  C  C  G  K  R  C  C  W  C  *  C  R  A  Y  R  G  V  A  S  A  R  N  C  G  *  F  Q  C  W  F  R  *  D  *  F  E  Q  V  *  R  E  G  Y  *  S  D  *  Y  T  R  C  V  N  *  G  C  C  *  S  C  Y  W  I  N  I  G  C  A  K  E  D  L  R  V  *  S  I  C  E  E  G  I  V  E  G  W  *  F  R  V  D  F  *   : V  *  W  Q  K  S  W  Y  H  R  I  R  E  D  W  L  S  N  C  K  E  S  R  G  F  *  L  S  N  Q  L  L  R  A  I  R  K  D  K  Y  E  L  Q  I  L  S  N  C  S  R  T  R  Y  Q  L  *  D  P  G  C  G  V  C  T  N  S  *  D  S  L  R  C  Q  P  R  S  D  *  C  I  R  C  K  R  D  S  Y  Q  H  W  K  G  T  S  C  *  *  K  R  D  G  I  F  S  S  *  W  S  I  R  G  R  W  P  *  C  V  *  E  *  T  *  S  P  *  *  S  V  R  P   </first_frame>
            <second_frame>  P  Y  R  R  K  M  E  S  I  G  V  L  M  A  C  P  M  S  S  Y  L  E  Q  Q  L  D  N  R  F  N  L  I  R  Y  W  N  F  S  D  K  K  Q  F  I  N  D  Y  A  H  S  I  R  A  V  V  G  N  A  A  A  G  A  D  A  E  L  I  E  A  L  P  Q  L  E  I  V  A  S  F  S  V  G  L  D  K  I  D  L  N  K  C  K  E  K  G  I  R  V  T  N  T  P  D  V  L  T  E  D  V  A  D  L  A  I  G  L  I  L  A  V  L  R  R  I  C  E  S  D  R  Y  V  K  K  G  L  W  K  A  G  D  F  A  L  T  S  K  :  F  S  G  K  R  V  G  I  I  G  L  G  R  I  G  L  A  I  A  K  R  A  E  A  F  D  C  P  I  S  Y  Y  A  R  S  E  K  T  N  T  N  Y  K  Y  Y  P  T  V  V  E  L  A  T  N  C  E  I  L  V  V  A  C  A  L  T  P  E  T  R  Y  V  V  N  R  E  V  I  D  A  L  G  A  K  G  I  L  I  N  I  G  R  G  P  H  V  D  E  K  E  M  V  S  S  L  L  D  G  R  L  G  G  A  G  L  D  V  F  E  N  E  P  E  V  P  D  N  L  F  G  L  </second_frame>
            <third_frame>   H  I  E  E  K  W  N  L  *  E  Y  *  W  R  V  Q  C  H  H  T  *  N  N  N  S  I  I  D  S  T  S  Y  V  T  G  T  S  P  I  R  N  N  S  S  T  T  T  L  I  Q  Y  V  L  L  W  E  T  L  L  L  V  L  M  Q  S  L  S  R  R  C  L  S  *  K  L  W  L  V  S  V  L  V  *  I  R  L  I  *  T  S  V  K  R  R  V  L  E  *  L  I  H  Q  M  C  *  L  R  M  L  L  I  L  L  L  D  *  Y  W  L  C  *  G  G  F  A  S  L  I  D  M  *  R  R  D  C  G  R  L  V  I  S  R  *  L  L  S :   L  V  A  K  E  L  V  S  *  D  *  G  G  L  A  *  Q  L  Q  R  E  Q  R  L  L  I  V  Q  S  V  T  T  R  D  Q  K  R  Q  I  R  I  T  N  T  I  Q  L  *  *  N  S  L  P  I  V  R  S  W  L  W  R  V  H  *  L  L  R  L  V  T  L  S  T  A  K  *  L  M  H  *  V  Q  K  G  F  L  S  T  L  E  G  D  L  M  L  M  K  K  R  W  Y  L  L  F  L  M  V  D  *  G  A  L  A  L  M  C  L  R  M  N  L  K  S  L  I  I  C  S  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89310" stop="89747"/>
                    <exon start="89989" stop="90378"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYRRKMESIGVLMACPMSSYLEQQLDNRFNLIRYWNFSDKKQFINDYAHSIRAVVGNAAAGADAELIEALPQLEIVASFSVGLDKIDLNKCKEKGIRVTNTPDVLTEDVADLAIGLILAVLRRICESDRYVKKGLWKAGDFALTSKFSGKRVGIIGLGRIGLAIAKRAEAFDCPISYYARSEKTNTNYKYYPTVVELATNCEILVVACALTPETRYVVNREVIDALGAKGILINIGRGPHVDEKEMVSSLLDGRLGGAGLDVFENEPEVPDNLFGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="99316" PGL_stop="98153"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99316" e_stop="99287"/>
            <exon e_start="98771" e_stop="98153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.737" acc_prob="0.000" e_score="0.433"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.433">
            <gDNA_exon_boundary e_start="99316" e_stop="99287" e_length="30"/>
          </exon>
          <intron i_serial="1" don_prob="0.737" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99286" i_stop="98772" i_length="515"/>
          </intron>
          <exon e_serial="2" e_score="0.903">
            <gDNA_exon_boundary e_start="98771" e_stop="98153" e_length="619"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99316" stop="99287"/>
              <exon start="98771" stop="98153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546563" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCACAGACCAGAAGAGTTTTAGCTTTGAA : ATTACACCAAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAACAGTCCTCTATTGCTCAACAAGCCTAAGTAGAAAAACAATCTACCCACTAAGCTATCCTAACTGGACAACTTAGACTTTATCACAACACACCAATTCCTTTATAGTTTTAGGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTCCTAAACAACTAGACGAAAAGCTCCAGATGTTGCTGTTGTCCTTGGAATAATTCTGCCTTTGCTTTGTGTAGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTACAACAAATGTTTAGGAAAATGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGCTGGAAAGGTCACACTTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGTACCGTCTACAGCTGGCAGTCGACTGGCTCATCATCATGAGAGTCTGGTACCTCTACTAGGTCCCTGGGTTTGTTTCATCTGCAATACTTCAAACAAGACACCTGCAATACTCAAGTAGAAAACCCTGTACCTTTATGAGGTCCCTAAGTTTGTCAAATCATCAAAACTACAAATAACAATACCATAAA</gDNA_template>
            <first_frame> P  T  D  Q  K  S  F  S  F  E  :  I  T  P  K  R  K  K  E  L  S  I  L  P  L  S  N  S  P  L  L  L  N  K  P  K  *  K  N  N  L  P  T  K  L  S  *  L  D  N  L  D  F  I  T  T  H  Q  F  L  Y  S  F  R  S  G  L  Q  F  K  N  K  R  I  N  S  *  T  T  R  R  K  A  P  D  V  A  V  V  L  G  I  I  L  P  L  L  C  V  A  F  A  R  V  L  E  K  F  L  S  S  C  K  N  Y  N  K  C  L  G  K  C  L  L  Y  G  Q  V  T  F  L  N  F  F  A  I  G  W  K  G  H  T  F  L  T  P  S  G  S  V  H  L  L  S  V  P  S  T  A  G  S  R  L  A  H  H  H  E  S  L  V  P  L  L  G  P  W  V  C  F  I  C  N  T  S  N  K  T  P  A  I  L  K  *  K  T  L  Y  L  Y  E  V  P  K  F  V  K  S  S  K  L  Q  I  T  I  P  *  </first_frame>
            <second_frame>  P  Q  T  R  R  V  L  A  L  K :   L  H  Q  N  V  R  K  S  Y  Q  S  Y  R  *  A  T  V  L  Y  C  S  T  S  L  S  R  K  T  I  Y  P  L  S  Y  P  N  W  T  T  *  T  L  S  Q  H  T  N  S  F  I  V  L  G  V  V  Y  N  L  R  T  R  E  *  I  P  K  Q  L  D  E  K  L  Q  M  L  L  L  S  L  E  *  F  C  L  C  F  V  *  P  L  Q  E  F  L  K  S  F  Y  Q  V  A  K  T  T  T  N  V  *  E  N  A  F  Y  M  G  K  S  L  S  *  T  S  L  P  L  A  G  K  V  T  L  F  *  R  H  R  E  V  C  T  Y  F  L  Y  R  L  Q  L  A  V  D  W  L  I  I  M  R  V  W  Y  L  Y  *  V  P  G  F  V  S  S  A  I  L  Q  T  R  H  L  Q  Y  S  S  R  K  P  C  T  F  M  R  S  L  S  L  S  N  H  Q  N  Y  K  *  Q  Y  H  K </second_frame>
            <third_frame>   H  R  P  E  E  F  *  L  *   : N  Y  T  K  T  *  E  R  V  I  N  L  T  V  K  Q  Q  S  S  I  A  Q  Q  A  *  V  E  K  Q  S  T  H  *  A  I  L  T  G  Q  L  R  L  Y  H  N  T  P  I  P  L  *  F  *  E  W  F  T  I  *  E  Q  E  N  K  F  L  N  N  *  T  K  S  S  R  C  C  C  C  P  W  N  N  S  A  F  A  L  C  S  L  C  K  S  S  *  K  V  F  I  K  L  Q  K  L  Q  Q  M  F  R  K  M  P  F  I  W  A  S  H  F  P  K  L  L  C  H  W  L  E  R  S  H  F  S  D  A  I  G  K  C  A  P  T  F  C  T  V  Y  S  W  Q  S  T  G  S  S  S  *  E  S  G  T  S  T  R  S  L  G  L  F  H  L  Q  Y  F  K  Q  D  T  C  N  T  Q  V  E  N  P  V  P  L  *  G  P  *  V  C  Q  I  I  K  T  T  N  N  N  T  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98573" stop="98223"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTRRKAPDVAVVLGIILPLLCVAFARVLEKFLSSCKNYNKCLGKCLLYGQVTFLNFFAIGWKGHTFLTPSGSVHLLSVPSTAGSRLAHHHESLVPLLGPWVCFICNTSNKTPAILK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="107114" PGL_stop="109309"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107114" e_stop="107599"/>
            <exon e_start="109293" e_stop="109309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.918"/>
          <exon-only e_score="0.824"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="107114" e_stop="107599" e_length="486"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107600" i_stop="109292" i_length="1693"/>
          </intron>
          <exon e_serial="2" e_score="0.824">
            <gDNA_exon_boundary e_start="109293" e_stop="109309" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107114" stop="107599"/>
              <exon start="109293" stop="109309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGTAGACGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAAGTGTGACCTTTCCAGCCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCATTTTCCTAAACATTTGTTGTAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTACACAAAGCAAAGGCAGAATTATTCCAAGGACAACAGCAACATCTGGAGCTTTTCGTCTAGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGATGTGTTGTGATAAAGTCTAAGTTGTCCAGTTAGGATAGCTTAGTGGGTAGATTGTTTTCTACTTAGGCTTGTTGAGCAATAGAGGACTGTTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTTGGTGTAATCGTGTTTCGCTTTTACTTTTGAAGATTAGTGAAAACGATTGAAA : AAACAAAAAAAATAAGA</gDNA_template>
            <first_frame> A  V  D  G  T  E  S  R  C  T  L  P  D  G  V  R  K  V  *  P  F  Q  P  M  A  K  K  F  R  K  V  T  C  P  Y  K  R  H  F  P  K  H  L  L  *  F  L  Q  L  D  K  N  F  S  R  T  L  A  K  A  T  Q  S  K  G  R  I  I  P  R  T  T  A  T  S  G  A  F  R  L  V  V  *  E  F  I  L  L  F  L  N  C  K  P  L  L  N  L  *  R  N  *  C  V  V  I  K  S  K  L  S  S  *  D  S  L  V  G  R  L  F  S  T  *  A  C  *  A  I  E  D  C  C  L  T  V  R  L  I  T  L  S  Y  V  L  V  *  S  C  F  A  F  T  F  E  D  *  *  K  R  L  K  :  K  Q  K  K  *   </first_frame>
            <second_frame>  L  *  T  V  Q  K  V  G  A  H  F  P  M  A  S  E  K  C  D  L  S  S  Q  W  Q  R  S  L  G  K  *  L  A  H  I  K  G  I  F  L  N  I  C  C  S  F  C  N  L  I  K  T  F  Q  E  L  L  Q  R  L  H  K  A  K  A  E  L  F  Q  G  Q  Q  Q  H  L  E  L  F  V  *  L  F  R  N  L  F  S  C  S  *  I  V  N  H  S  *  I  Y  K  G  I  D  V  L  *  *  S  L  S  C  P  V  R  I  A  *  W  V  D  C  F  L  L  R  L  V  E  Q  *  R  T  V  A  *  R  *  D  *  *  L  F  L  T  F  W  C  N  R  V  S  L  L  L  L  K  I  S  E  N  D  *  K :   N  K  K  N  K  </second_frame>
            <third_frame>   C  R  R  Y  R  K  *  V  H  T  S  R  W  R  Q  K  S  V  T  F  P  A  N  G  K  E  V  *  E  S  D  L  P  I  *  K  A  F  S  *  T  F  V  V  V  F  A  T  *  *  K  L  F  K  N  S  C  K  G  Y  T  K  Q  R  Q  N  Y  S  K  D  N  S  N  I  W  S  F  S  S  S  C  L  G  I  Y  S  L  V  L  K  L  *  T  T  P  K  S  I  K  E  L  M  C  C  D  K  V  *  V  V  Q  L  G  *  L  S  G  *  I  V  F  Y  L  G  L  L  S  N  R  G  L  L  L  N  G  K  I  D  N  S  F  L  R  F  G  V  I  V  F  R  F  Y  F  *  R  L  V  K  T  I  E   : K  T  K  K  I  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0266F15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="117011" PGL_stop="117423"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117011" e_stop="117423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="117011" e_stop="117423" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117011" stop="117423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205773" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGAGCATGATGTTGGGTTTTATTTGCCCTGATTTCTTACCATAAATAGGTTTTCCTTTTAGGAAAAGGTTTTGAATTGACTAATCCTTTTTTGGTAGGAAAAGGTTTAGGACTCTATAAATAGAGGCATGTTCCTTCTAATTTAATCAGCATTCACAATGTAGTCTTAAGGGCTTTGAGAGTTTTGGTTAGAGGGAGAATGTGTGAGTCACAAGTTTGATACGTTATCAATTGTGTGAACCTCCCATGTATTCCGAATGAATTGGTTGAGGTTGTTTCTCTCTGTATTTTGTACTCTCATATTTATAGTGGATTGCTCATCTCCTTTGTGGACGTAGGTCGATTGACCGAACCACGTTAAATCTTTGTGTCTTTTGGTATATTTCTCGTTGTCTTCTTACTCGTGGTCTTT</gDNA_template>
            <first_frame> F  E  H  D  V  G  F  Y  L  P  *  F  L  T  I  N  R  F  S  F  *  E  K  V  L  N  *  L  I  L  F  W  *  E  K  V  *  D  S  I  N  R  G  M  F  L  L  I  *  S  A  F  T  M  *  S  *  G  L  *  E  F  W  L  E  G  E  C  V  S  H  K  F  D  T  L  S  I  V  *  T  S  H  V  F  R  M  N  W  L  R  L  F  L  S  V  F  C  T  L  I  F  I  V  D  C  S  S  P  L  W  T  *  V  D  *  P  N  H  V  K  S  L  C  L  L  V  Y  F  S  L  S  S  Y  S  W  S   </first_frame>
            <second_frame>  L  S  M  M  L  G  F  I  C  P  D  F  L  P  *  I  G  F  P  F  R  K  R  F  *  I  D  *  S  F  F  G  R  K  R  F  R  T  L  *  I  E  A  C  S  F  *  F  N  Q  H  S  Q  C  S  L  K  G  F  E  S  F  G  *  R  E  N  V  *  V  T  S  L  I  R  Y  Q  L  C  E  P  P  M  Y  S  E  *  I  G  *  G  C  F  S  L  Y  F  V  L  S  Y  L  *  W  I  A  H  L  L  C  G  R  R  S  I  D  R  T  T  L  N  L  C  V  F  W  Y  I  S  R  C  L  L  T  R  G  L  </second_frame>
            <third_frame>   *  A  *  C  W  V  L  F  A  L  I  S  Y  H  K  *  V  F  L  L  G  K  G  F  E  L  T  N  P  F  L  V  G  K  G  L  G  L  Y  K  *  R  H  V  P  S  N  L  I  S  I  H  N  V  V  L  R  A  L  R  V  L  V  R  G  R  M  C  E  S  Q  V  *  Y  V  I  N  C  V  N  L  P  C  I  P  N  E  L  V  E  V  V  S  L  C  I  L  Y  S  H  I  Y  S  G  L  L  I  S  F  V  D  V  G  R  L  T  E  P  R  *  I  F  V  S  F  G  I  F  L  V  V  F  L  L  V  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0266F15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 568 chains have been computed
$ 
$ memory statistics:
$ 1900424 bytes spliced alignments in total
$ 113 spliced alignments have been stored
$ 16817 bytes was the average size of a spliced alignment
$ 30800 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1711 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 631 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 01:05:34
-->
