<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 01:43:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7755" ref_strand="+" ref_description="SGN-M7755 C2_At3g16170 [cosii_markers]">
      <seq>tcaacctgtggctaacccaatcggaaaccgacgccgccgatcccgccggcgagaccaaccccccaaccatagacgtatttgaactatttggttattaacgaagaaaccaaaaatttcaacgaagccacatttactatgtcacgtaacatacagttgtggcaaccaaagctgttgggtcgccataaattgacatttcttgttttttctttataaagaaatactcctcacctaatagtatgagcacattgaaaattttcaactactttctcagttctaaggccacacctctgcactctttatatattcagtatcatttttcgtgtcaaagatatcatagctttatctcctcgcaacttcgcctcttatcctccgctacaagtagtataagctatatggagctggtcaaggaagttgccagcaagggacctgaatcgcagaagaatattgcgataagagctgatgaaaagagctacagttacctgcagttgatttcatctgcaaggagaatttcaagtttgttaagcaagctagatcttaaaaccgacaaaggcatcaaagaaaatgaacatcacaaaggagcaagagtagggattgtgtccaaaccttctgctgagttcgttgctggaatactaggaacctggcttagtggaggttgtgcagttcctcttgctctgagctatcctgagagtgaactgctacatgtgatgaatgactcggacatctccataattttgagtactgaagaccaccaagaacttatgaatgcaattgcagcaaaaactggtgctcagttgtctctcattccttcaattcctgatgtgcattcatcaacaaaacatgaccaatcaaaagacatggtttctgacggtcaacaagatctgctagagatcaattcttatggcgagaaccctgcttttatcttgtacaccagcggcacaacagggaaaccaaaaggagttgtgcacacacacaatggagtcttagcacaggtccaaatgttagctaatgcatgggaatacacgcccaaggatcaatttctgcattgtctaccactccatcatgtgcatggacttttcaatgctttgcttgcccctctttatgcaggttccacggtcgacttcgtgccaaaattcagtgtgaggggaatttggcagagatggcgtgaatcatatcctacagatgggactataacagataatgccattacggtgtttactggagttccaactatgtatgcacgattgatacaaggttatgaagcaatggatccagaactaaaaacagcttctgcttcagcagcaaggcacttgcgccttatgatgagtggctcctctgcacttcctctgcccgtcatgcagcagtgggaaaccattactggacaccggttattggaacgttatggcatgactgagtttgtgatggcaatctctaatcccataaacggcaagcgcaaaggaggtactgttggcaagccatttccaggtgtgcaggccaagattcttttggacgatgcgagtagcaatgaccaaactggagttggggagctctgcattaagagcccatcactgttcaaagaatactggaaattacctgaggtaaccaagcagtcatttactgatgatggatatttcaagactggagatactgttactgttgacgaagaggggtattacatcattctaggacgtacaaatgctgatattatgaagtttggtggatacaaattatcagcgttggaaattgaagcagttctgttggagcatcaagctatattagagtgctgtgttttaggcttgcctgacaaagactatggcgaagtggtatgtgcaatagttgtgcctgaggctgaagttaaaagaagacgagatgaggagctaaagcctgcactaaccttgcacgaactttatgattgggcgaaggagaagcttgccccatacaagataccaactgctctgtttctgtgggaatctctgcctcgaaatgcgatgggaaaggtaaacaagaaagagctaaaaaggaagctgactgaagatcccaaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3419" stop="10468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3719" g_stop="4090" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4091" i_stop="4458" i_length="368">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4459" g_stop="4628" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="542" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4629" i_stop="4894" i_length="266">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4895" g_stop="5068" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="716" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5069" i_stop="5363" i_length="295">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5364" g_stop="5547" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="900" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5548" i_stop="5660" i_length="113">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5661" g_stop="5749" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="901" r_stop="989" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5750" i_stop="6279" i_length="530">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6280" g_stop="6349" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="990" r_stop="1059" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6350" i_stop="6481" i_length="132">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6482" g_stop="6534" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1060" r_stop="1112" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="6535" i_stop="6628" i_length="94">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="6629" g_stop="6736" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1113" r_stop="1220" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="6737" i_stop="7331" i_length="595">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="7332" g_stop="7430" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1221" r_stop="1319" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="7431" i_stop="7620" i_length="190">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="7621" g_stop="7713" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1320" r_stop="1412" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="7714" i_stop="7801" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="7802" g_stop="7879" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1413" r_stop="1490" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="7880" i_stop="8040" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="8041" g_stop="8145" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1491" r_stop="1595" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="8146" i_stop="8442" i_length="297">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="8443" g_stop="8533" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1596" r_stop="1686" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="8534" i_stop="9225" i_length="692">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="9226" g_stop="9299" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1687" r_stop="1760" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="9300" i_stop="9437" i_length="138">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.353" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="9438" g_stop="9617" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1761" r_stop="1940" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="9618" i_stop="9901" i_length="284">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.838" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="9902" g_stop="9955" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1941" r_stop="1994" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="9956" i_stop="10119" i_length="164">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="10120" g_stop="10168" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1995" r_stop="2043" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-M7755" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2043</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3719" e_stop="4090"/>
          <exon e_start="4459" e_stop="4628"/>
          <exon e_start="4895" e_stop="5068"/>
          <exon e_start="5364" e_stop="5547"/>
          <exon e_start="5661" e_stop="5749"/>
          <exon e_start="6280" e_stop="6349"/>
          <exon e_start="6482" e_stop="6534"/>
          <exon e_start="6629" e_stop="6736"/>
          <exon e_start="7332" e_stop="7430"/>
          <exon e_start="7621" e_stop="7713"/>
          <exon e_start="7802" e_stop="7879"/>
          <exon e_start="8041" e_stop="8145"/>
          <exon e_start="8443" e_stop="8533"/>
          <exon e_start="9226" e_stop="9299"/>
          <exon e_start="9438" e_stop="9617"/>
          <exon e_start="9902" e_stop="9955"/>
          <exon e_start="10120" e_stop="10168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCTGTGGCTAACCCAATCGGAAACCGACGCCGCCGATCCCGCCGGCGAGACCAACCCCCCAACCATAGACGTATTTGAACTATTTGGTTATTAATGAAGAAACCAAAAATTTCAACGAAGCCACATTTACTATGTCACGTAACATACAGTTGTGGCAACCAAAGCTGTTGGGTCGCCATAAATTGACATTTCTTGTTTTTTCTTTATAAAGAAATACTCCTCACCTAATAGTATGAGCACATTGAAAATTTTCAACTACTTTCTCAGTTCTAAGGCCACACCTCTGCACTCTTTATATATTCAGTATCATTTTTCGTGTCAAAGATATCATAGCTTTATCTCCTCGCAACTTCGCCTCTTATCCTCCGGTAAGTTGAGGAATTTCGATTATCTCGATATAAGTTATTGTAAATTGGTATGTGTTCATCCAATATAGAAATGGGGTTCACTTGATTTTGAGATTTGGGGTGGTGTTTGTTTGGGAAAATGTTAAAGAAATGGAAGCGTATCAATTGTTTGAAGAAATGTTTGTTTGAGTCAGCTTCACTCGATTATGGATTTTTGACAGCTAGTGCTCGATGAATTAGAAATATGAGAAGATAAAATGATCTTAAAATTTGAAAAAGGGGCAATTTTGATCTTTGGGGATTTCCGACTTTGTTTTCCTTGATCATATTAGGTTTAGGATCAGTAGAAATAAATTATAAGTCTTATGAATTTCATTGGCTATTTTCAGCTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACCGTGAGTTGGAAATGACGAATTATCTATGAATAACTAAAGCTGCATGAATTTGTGTTTCTATTGAATAGTGTAAATTAAATGAAAGTTTTCTTTTCCCAGTTGTAATGTTTAGTCGACAATTATATTGTTTACGAAATTCATTCAATGTGAGTCCTTCACCCCACATTATCTTTTTCATCTGGATATATTGCTCTTCCAATTCCAAGGTCAGTCTACAGAATTTACTTCCGTTATTGCTTTCTGCTCAGTTGCTTCTACTTTTTCAGGACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCGGTCTGTCTCTGAATCTTTGTTCTTCTCCCTCACTGTTTCATGTCAGTAAAGTGTTTTATTGATAGATAATGAAGACACAAAAAAATGAATGTCTTTTGCCTTTTGAAATGCTCAATATTAATGACATAGATTGCATTATTTGTCATGCCTTGCTATCTGTCTGTAGATGATTAGCTCATGTTCAATTAGGCTGAATATTACCTGTCTGCATGATGTAGAAACACTGCAATGTCCTCTTCACTGTTTTTTTCCTCTTTTATGCTTATTTAATTCATTGTGAAACATTGATTTCTAGGACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATGGTGAGATAATGGGTAATTTGTCTGTTTCTCTATATGGTTATATATTTTCCCATTTGAGATGTTTGGAGCTCATCAATAGCATTTTCCTTTGTTCTGTACATGTTATCTTTAAGGCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGAGTCTTAGCACAGGTTGATGTCTGTTCTAGACTTGATATCAGCATTCCCCTGCTTTGTTGGATCTTGATATGATTGATTCTTAGCCTTTATGTCTTCTTTTCAAATTCATTGATTTACTAGAAACATTCCACTTCTACTTCGTGATGTTACACTATAAATTAAGGCTCAGAAGATATCATTCATATCACAGACCTTGGTGTGTCCAATTGAGCAAGTTTGCTTCCCCTTTTTTCTTCCTCAATTAGGCTGTGAATGCATATGTATTCCATAATTCTGAAGGTAGGATAACATGCGATAGTATTTGTATTGCTGAGAGATGATAAGTAACCCAAGTCAGCACCTTGGACTAACTTCTGTTGTAATGAAGAAGAGTCGATATCATTTACTAAAGTGACCTTGCTTAGATCTTGTTTCAGTTGTCAGTAATATTGAGAGGGGTGAGGATTGTCTTTATTGAAGTTTCGATATGAAATACTCTTTTCAGTTTACTGGAAGTTTTGTTGATGTCTGTGCTAACCCTCCTTCCATGTTTGCTGTTTCAGGTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATCATATCCACATTCCTTTATTTTTGTTCCCAATCATGTTGTTTACATAATTCCTGCTTTTGCAATGTGTTTTTGTGTGGGATAAACAATCTCATTTGGACTACAAAACTGGCTGATCCTTAACCTGTACTGTACATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCACGGTATAATTTCACATCGTCAAACTTTTTTCACTACAGCATACATGCTGTCGGATTGGAAATTCATGTTACTATATCCGCTTTTCTCTTTTTGAAGGTCGACTTCGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGGACTATAACAGATAATGCCATTACGGTGTTTACTGGAGTAAGTCAGTTTTAAATAGATTAGTGAAACATTTTTGCAATGGTATGTGATGTTAGTTGATCTGTGAATTTATTATGTTGAGCTTTGCATTCTTAAACTTACCATGGAAAAATGATTTCTCGCTTCAGTTACATAATATGTGCATGAAGCTTTGAGTAAGAATACATGTTTCGTGTTTCTGCATCCCTGAAATGGACTCACAGTGGAAGCCTCTAATAATGTCATCACTTTCTTAATTTATCATGAAACTCCATTGCATCCTGTTTGCATCAAAGCTAAGAATAAGAATACATGGTTTCTCGATTCTTTTGCATAATGCTTTCTTTATGGCTGAGACTAATAATACCATGTCATGATCTGTGATTTCTGTATCCTTGGATAGGAGATACTTACAGCAGAAGCTTCTACTTAATGTCAGATATCTAAGATGTCACTACTCTGATTGTATTTGGGGTATCGATACGGATAACTTTAGCTATTGTGTGTACCTAGCTTGGATTTTCCAACGCTATGTGTCAACTAATAAGTTTGGTAGCGGATCCACCGACTCCTACCCTCCACTCTTTTCTGATTGATTTTTTTTCTAATCCAATAGGTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATGGTAATAGACTTGGTTTCTATTTTGCTGGTGTTTTTGATAAACAACATAAAACATAGTTAGGATCTTAACTGTACAGAGCCTGCTTCCTCATTTTGTTTTGTTTTGATTGAGTATAGAGTGTACTGTTGTCAAAACCTAATGTGTTTTTTAATCATCCCAAATGAGAAAAAACAATGATTTCTGCTTCCAGATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAGGTAAATGTGCTCATAGCCACTTTTAGTATGTAGGATTTTGACTGTTCATTTAATATCTATACTTATGTAAATGGTTAATTTCGTCTAGTTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAGGTTAGTGAGTTCCTTATGTTATGTTCTCAACATCTAATATGCTGCTGCAACAAAGTCCATAAATGCAGCCCAAAATTTTTGTTAGATATATCCCGTATTTATGATAAGGTCTATCTATTTTTCCTGAATAGTCTATCACTTCTTTATTTTGTTTCTGATAGGCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAGGTAATCACTACATAGTAGGGAATTCTACTACTTAAACATCTCCTGCTTTGAATTTTTTTCATGCATTTATGTTAATAGCCATTTGTTTATTTGCTTTCATGAAATAAAGTTATCTTGTACTCTCTCACACACACACCCTTCCCCCCCTCCCTTTGCGCTCTTGAACCATGTCAAGCACTTAGTTTGAATCTATTACTATTTGCAATTGAGGCTAAGTGGCTCTCCAAATTGAAATAGATGACTTCTTATGCCATTTCTCGGTATTGAGCATCTCTTGTACCTGCGAGGATTTTCTAGGTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGACGTAAGCATACTGTCTTCCAAATTTTTTTCTAGTTGTGCTATACCAATTTCATATGGTTTTCTTTGAATTGTTAGTTGCTACTTGTGCTATACCAATTTTATGTATGTTATGTCCCTAGTAAACTTGTATGACCTGCATGAGATTTGAATGGCAACTTCTCTGAAAGCAATTAAGCATAATCTTGTCTCCTTTCCCCTTTTGAATTTGTTCGTACATTAAAAATGACAATGTTGTCTACGTGACTGCTTTCTCAAATGATGAGGTCGAATCACTGAAAATGACTATCTGGCTACTTCGGCTTTTCTGATATAGTAATATCTACCAATCATTGAGCAAGTGCAAGTATGATTGCCATGCACCTAAAATTTCTCAATTTGTAGTTCAAACCCTCAAATGATAGTGTGTGTGTAACTTTGTCTTGTGTGTTCAAGAACCCAAATGGTAGATATAGGTCTGTGAAAGATGTTCATCTAACTAGATTATAGTTGATGTTAGTTTTATCAATAAATATATTTTGAAGACAAAATTCTAATTTATAGAAGTGTTACTTATTAAGTTTATTCGACCTTGGTTCTTTGGCCTGTTGTTTTCCATTCATAAAACAATGCGGTGATGAACGTTCTTTTTCCATCAAGCTGTATCGGTTAGAGAAAAAATTGATTTCTTTTAGAATTGATATTTTTTCTTTTCAGGTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGGAAATTGAAGCAGTTCTGTTGGAGGTTGCTGCTTGTCTATCTATCTATATAAACACCCTTGGTTTCTATCAAATTTTGAATGTCCCACTCTGATATAGCTCTCAAATATATGATTTCAACAGTTGACATTAATCCCGTTTTAATCAAATTTCCTGTTCACAGCATCAAGCTATATTAGAGTGCTGTGTTTTAGGCTTGCCTGACAAAGACTATGGCGAAGTGGTATGTGCAATAGTTGTGCCTGAGGCTGAAGTTAAAAGAAGACGAGATGAGGAGCTAAAGCCTGCACTAACCTTGCACGAACTTTCTGATTGGGCGAAGGAGAAGCTTGCCCCATACAAGGTATCACCCATACTTGTAGAGCTAATTCTTACTGTTGAGCTTATAAAGTCATGTTGGTCCTCCATATATTGAGCTTGGAAAACAAATTCCTTGTTCTAGTACAGTACATGACTGTTTGAATGATGAAGAAACATATAAACGTTGAATTACTTGGAGTAGGAAAACGGACTTCATGCTTGTTTGGTTGATTTTGTTGCTATGATTTGCTTTTCTTGCGATATGTTTTGGTATTGAAGTACTAAGGTGCTTAAGCTAATTCTTGCCACTTTATGACTGTAATCCAGATACCAACTCGTCTGTTTCTGTGGGAATCTCTGCCTCGAAATGCGATGGGAAAGGTGAGATATACCTACTTTTTGACTCCATAGTTTTTTTAGCTGTTTTTAGTAGTGAATAGATATTTGCCTCCCTATTTTCTTTCACTTGTGTTCTTTTTTAATATTTGAATTGAAATAATATTGGTTATAAACAGCAGATTTGATGTCCTTTTTCTGTGTACTAGGTAAACAAGAAAGAGCTAAAAAGGAAGCTGACTGAAGATCCCAAATGAG</genome_strand>
        <mrna_strand>TCAACCTGTGGCTAACCCAATCGGAAACCGACGCCGCCGATCCCGCCGGCGAGACCAACCCCCCAACCATAGACGTATTTGAACTATTTGGTTATTAACGAAGAAACCAAAAATTTCAACGAAGCCACATTTACTATGTCACGTAACATACAGTTGTGGCAACCAAAGCTGTTGGGTCGCCATAAATTGACATTTCTTGTTTTTTCTTTATAAAGAAATACTCCTCACCTAATAGTATGAGCACATTGAAAATTTTCAACTACTTTCTCAGTTCTAAGGCCACACCTCTGCACTCTTTATATATTCAGTATCATTTTTCGTGTCAAAGATATCATAGCTTTATCTCCTCGCAACTTCGCCTCTTATCCTCCG................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACC..........................................................................................................................................................................................................................................................................GACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCG.......................................................................................................................................................................................................................................................................................................GACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATG.................................................................................................................GCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGAGTCTTAGCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATC....................................................................................................................................ATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCACG..............................................................................................GTCGACTTCGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGGACTATAACAGATAATGCCATTACGGTGTTTACTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATG..............................................................................................................................................................................................ATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAG........................................................................................TTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAG.................................................................................................................................................................GCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAG.........................................................................................................................................................................................................................................................................................................GTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGGAAATTGAAGCAGTTCTGTTGGAG..........................................................................................................................................CATCAAGCTATATTAGAGTGCTGTGTTTTAGGCTTGCCTGACAAAGACTATGGCGAAGTGGTATGTGCAATAGTTGTGCCTGAGGCTGAAGTTAAAAGAAGACGAGATGAGGAGCTAAAGCCTGCACTAACCTTGCACGAACTTTATGATTGGGCGAAGGAGAAGCTTGCCCCATACAAG............................................................................................................................................................................................................................................................................................ATACCAACTGCTCTGTTTCTGTGGGAATCTCTGCCTCGAAATGCGATGGGAAAG....................................................................................................................................................................GTAAACAAGAAAGAGCTAAAAAGGAAGCTGACTGAAGATCCCAAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7755-2" ref_strand="+" ref_description="SGN-M7755-2 C2_At3g16170-2 [cosii_markers]">
      <seq>cccaatcggaaaccgttgacgctgatcccgccggcgagaccaacccccaaccatagacgtatttgaactgttgggttatttatgaagaaaccaaaaatttcaaccaagacacatttactatgtcacgtaacatacagttgtggcaaccaaagctgatgggtcgccataaattgacatttcttgttttttctttataaagaaatactcctcacctaatagtatgagcacattgaaatttctcaactacttcctctgttctaactcttcatatattcagtatcgttttgcctgtcccaaaaatcatagctttatctcatcccaacttcgcctcttatcctccgctacaagtagcataagctatatggagctggtcaaggaagttgccagcaagggacctgaatcgcagaagaatgttgcgataagagctgatgaaaagagctacagttacctgcagttgatatcatctgcgaggaaaatatcaaatttgttaagcaagctagatcttaaaaccgacaaaggcatcaaagaaaatgaacatcacaatggagcaagagtagggattgtggccaaaccttctgctgagttcgttgctggaatactagggacctggcttagtggaggttgtgcagttcctcttgctctgagctaccctgagagtgaactgctacatgtgatgaatgactcggacatctccataattttgagtactgaagaccaccaagaacttatgaatgcaattgcagcaaaaactggtgctcagttatctctcattccttcaattcccgatgtgcattcatcaacaaagcatgaccagtcaaaagacatggtttctgacggtcaacaagatctgctagaaatcaattcctacggcgagaaccctgcttttatcttgtacaccagcggcacaacagggaaaccaaaaggagttgtccacacacacaatggagtcttagcacaggtccaaatgttagctaatgcatgggaatacacgcccaaggatcaatttctgcattgtctaccactccatcatgtgcatggacttttcaatgctttgcttgcccctctttatgcaggttccacggtcgactttgtgccaaaattcagtgtgaggggaatttggcagagatggcgtgaatcatatcctacagatgggactataatggataatgccatcacagtgtttactggagttccaactatgtatgcacgattgatacaaggttatgaagcaatggatccagaactaaaaacagcatctgcttcagcagcaaggcacttgcgtcttatgatgagtggctcctctgcacttcctctgcctgtcatgcagcagtgggaaaccattacaggacaccggttattggagcgttatggcatgactgagtttgtgatggctatctctaatcccataagtggcaagcgcaaaggaggtactgttggcaagccatttccaggtgtgcaggccaagattcttttggacgatgaaagtagtaatgacaaaactggagttggggagctctgcattaagagcccatcattgttcaaagaatactggaaattacctgaggtaaccaagcagtcatttactgatgatggatatttcaagactggagatactgttactgttgacgaagacggatattacatcattctgggacgtacaaatgctgatattatgaagtttggtggatacaaattgtcagcattggaaattgaagcagttctattggagcatcaagctatatcagagtgctgtgtgttaggcttgcctgacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3434" stop="9783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3734" g_stop="4090" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4091" i_stop="4458" i_length="368">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4459" g_stop="4628" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="511" r_length="170" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4629" i_stop="4894" i_length="266">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4895" g_stop="5068" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="685" r_length="174" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5069" i_stop="5363" i_length="295">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5364" g_stop="5547" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="869" r_length="184" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5548" i_stop="5660" i_length="113">
            <donor d_prob="0.959" d_score="0.94"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5661" g_stop="5749" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="870" r_stop="958" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5750" i_stop="6279" i_length="530">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6280" g_stop="6349" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="959" r_stop="1028" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6350" i_stop="6481" i_length="132">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6482" g_stop="6534" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1029" r_stop="1081" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="6535" i_stop="6628" i_length="94">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="6629" g_stop="6736" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1082" r_stop="1189" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="6737" i_stop="7331" i_length="595">
            <donor d_prob="0.828" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="7332" g_stop="7430" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1190" r_stop="1288" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="7431" i_stop="7620" i_length="190">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.930" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="7621" g_stop="7713" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1289" r_stop="1381" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="7714" i_stop="7801" i_length="88">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="7802" g_stop="7879" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1382" r_stop="1459" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="7880" i_stop="8040" i_length="161">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="8041" g_stop="8145" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1460" r_stop="1564" r_length="105" r_score="0.952"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="8146" i_stop="8442" i_length="297">
            <donor d_prob="0.724" d_score="0.98"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="8443" g_stop="8533" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1565" r_stop="1655" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="8534" i_stop="9225" i_length="692">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="9226" g_stop="9299" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1656" r_stop="1729" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="9300" i_stop="9437" i_length="138">
            <donor d_prob="0.689" d_score="0.94"/>
            <acceptor a_prob="0.353" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="9438" g_stop="9483" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1730" r_stop="1775" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-M7755-2" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>1791</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7755-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3734" e_stop="4090"/>
          <exon e_start="4459" e_stop="4628"/>
          <exon e_start="4895" e_stop="5068"/>
          <exon e_start="5364" e_stop="5547"/>
          <exon e_start="5661" e_stop="5749"/>
          <exon e_start="6280" e_stop="6349"/>
          <exon e_start="6482" e_stop="6534"/>
          <exon e_start="6629" e_stop="6736"/>
          <exon e_start="7332" e_stop="7430"/>
          <exon e_start="7621" e_stop="7713"/>
          <exon e_start="7802" e_stop="7879"/>
          <exon e_start="8041" e_stop="8145"/>
          <exon e_start="8443" e_stop="8533"/>
          <exon e_start="9226" e_stop="9299"/>
          <exon e_start="9438" e_stop="9483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATCGGAAACCGACGCCGCCGATCCCGCCGGCGAGACCAACCCCCCAACCATAGACGTATTTGAACTATTTGGTTATTAATGAAGAAACCAAAAATTTCAACGAAGCCACATTTACTATGTCACGTAACATACAGTTGTGGCAACCAAAGCTGTTGGGTCGCCATAAATTGACATTTCTTGTTTTTTCTTTATAAAGAAATACTCCTCACCTAATAGTATGAGCACATTGAAAATTTTCAACTACTTTCTCAGTTCTAAGGCCACACCTCTGCACTCTTTATATATTCAGTATCATTTTTCGTGTCAAAGATATCATAGCTTTATCTCCTCGCAACTTCGCCTCTTATCCTCCGGTAAGTTGAGGAATTTCGATTATCTCGATATAAGTTATTGTAAATTGGTATGTGTTCATCCAATATAGAAATGGGGTTCACTTGATTTTGAGATTTGGGGTGGTGTTTGTTTGGGAAAATGTTAAAGAAATGGAAGCGTATCAATTGTTTGAAGAAATGTTTGTTTGAGTCAGCTTCACTCGATTATGGATTTTTGACAGCTAGTGCTCGATGAATTAGAAATATGAGAAGATAAAATGATCTTAAAATTTGAAAAAGGGGCAATTTTGATCTTTGGGGATTTCCGACTTTGTTTTCCTTGATCATATTAGGTTTAGGATCAGTAGAAATAAATTATAAGTCTTATGAATTTCATTGGCTATTTTCAGCTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACCGTGAGTTGGAAATGACGAATTATCTATGAATAACTAAAGCTGCATGAATTTGTGTTTCTATTGAATAGTGTAAATTAAATGAAAGTTTTCTTTTCCCAGTTGTAATGTTTAGTCGACAATTATATTGTTTACGAAATTCATTCAATGTGAGTCCTTCACCCCACATTATCTTTTTCATCTGGATATATTGCTCTTCCAATTCCAAGGTCAGTCTACAGAATTTACTTCCGTTATTGCTTTCTGCTCAGTTGCTTCTACTTTTTCAGGACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCGGTCTGTCTCTGAATCTTTGTTCTTCTCCCTCACTGTTTCATGTCAGTAAAGTGTTTTATTGATAGATAATGAAGACACAAAAAAATGAATGTCTTTTGCCTTTTGAAATGCTCAATATTAATGACATAGATTGCATTATTTGTCATGCCTTGCTATCTGTCTGTAGATGATTAGCTCATGTTCAATTAGGCTGAATATTACCTGTCTGCATGATGTAGAAACACTGCAATGTCCTCTTCACTGTTTTTTTCCTCTTTTATGCTTATTTAATTCATTGTGAAACATTGATTTCTAGGACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATGGTGAGATAATGGGTAATTTGTCTGTTTCTCTATATGGTTATATATTTTCCCATTTGAGATGTTTGGAGCTCATCAATAGCATTTTCCTTTGTTCTGTACATGTTATCTTTAAGGCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGAGTCTTAGCACAGGTTGATGTCTGTTCTAGACTTGATATCAGCATTCCCCTGCTTTGTTGGATCTTGATATGATTGATTCTTAGCCTTTATGTCTTCTTTTCAAATTCATTGATTTACTAGAAACATTCCACTTCTACTTCGTGATGTTACACTATAAATTAAGGCTCAGAAGATATCATTCATATCACAGACCTTGGTGTGTCCAATTGAGCAAGTTTGCTTCCCCTTTTTTCTTCCTCAATTAGGCTGTGAATGCATATGTATTCCATAATTCTGAAGGTAGGATAACATGCGATAGTATTTGTATTGCTGAGAGATGATAAGTAACCCAAGTCAGCACCTTGGACTAACTTCTGTTGTAATGAAGAAGAGTCGATATCATTTACTAAAGTGACCTTGCTTAGATCTTGTTTCAGTTGTCAGTAATATTGAGAGGGGTGAGGATTGTCTTTATTGAAGTTTCGATATGAAATACTCTTTTCAGTTTACTGGAAGTTTTGTTGATGTCTGTGCTAACCCTCCTTCCATGTTTGCTGTTTCAGGTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATCATATCCACATTCCTTTATTTTTGTTCCCAATCATGTTGTTTACATAATTCCTGCTTTTGCAATGTGTTTTTGTGTGGGATAAACAATCTCATTTGGACTACAAAACTGGCTGATCCTTAACCTGTACTGTACATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCACGGTATAATTTCACATCGTCAAACTTTTTTCACTACAGCATACATGCTGTCGGATTGGAAATTCATGTTACTATATCCGCTTTTCTCTTTTTGAAGGTCGACTTCGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGGACTATAACAGATAATGCCATTACGGTGTTTACTGGAGTAAGTCAGTTTTAAATAGATTAGTGAAACATTTTTGCAATGGTATGTGATGTTAGTTGATCTGTGAATTTATTATGTTGAGCTTTGCATTCTTAAACTTACCATGGAAAAATGATTTCTCGCTTCAGTTACATAATATGTGCATGAAGCTTTGAGTAAGAATACATGTTTCGTGTTTCTGCATCCCTGAAATGGACTCACAGTGGAAGCCTCTAATAATGTCATCACTTTCTTAATTTATCATGAAACTCCATTGCATCCTGTTTGCATCAAAGCTAAGAATAAGAATACATGGTTTCTCGATTCTTTTGCATAATGCTTTCTTTATGGCTGAGACTAATAATACCATGTCATGATCTGTGATTTCTGTATCCTTGGATAGGAGATACTTACAGCAGAAGCTTCTACTTAATGTCAGATATCTAAGATGTCACTACTCTGATTGTATTTGGGGTATCGATACGGATAACTTTAGCTATTGTGTGTACCTAGCTTGGATTTTCCAACGCTATGTGTCAACTAATAAGTTTGGTAGCGGATCCACCGACTCCTACCCTCCACTCTTTTCTGATTGATTTTTTTTCTAATCCAATAGGTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATGGTAATAGACTTGGTTTCTATTTTGCTGGTGTTTTTGATAAACAACATAAAACATAGTTAGGATCTTAACTGTACAGAGCCTGCTTCCTCATTTTGTTTTGTTTTGATTGAGTATAGAGTGTACTGTTGTCAAAACCTAATGTGTTTTTTAATCATCCCAAATGAGAAAAAACAATGATTTCTGCTTCCAGATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAGGTAAATGTGCTCATAGCCACTTTTAGTATGTAGGATTTTGACTGTTCATTTAATATCTATACTTATGTAAATGGTTAATTTCGTCTAGTTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAGGTTAGTGAGTTCCTTATGTTATGTTCTCAACATCTAATATGCTGCTGCAACAAAGTCCATAAATGCAGCCCAAAATTTTTGTTAGATATATCCCGTATTTATGATAAGGTCTATCTATTTTTCCTGAATAGTCTATCACTTCTTTATTTTGTTTCTGATAGGCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAGGTAATCACTACATAGTAGGGAATTCTACTACTTAAACATCTCCTGCTTTGAATTTTTTTCATGCATTTATGTTAATAGCCATTTGTTTATTTGCTTTCATGAAATAAAGTTATCTTGTACTCTCTCACACACACACCCTTCCCCCCCTCCCTTTGCGCTCTTGAACCATGTCAAGCACTTAGTTTGAATCTATTACTATTTGCAATTGAGGCTAAGTGGCTCTCCAAATTGAAATAGATGACTTCTTATGCCATTTCTCGGTATTGAGCATCTCTTGTACCTGCGAGGATTTTCTAGGTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGACGTAAGCATACTGTCTTCCAAATTTTTTTCTAGTTGTGCTATACCAATTTCATATGGTTTTCTTTGAATTGTTAGTTGCTACTTGTGCTATACCAATTTTATGTATGTTATGTCCCTAGTAAACTTGTATGACCTGCATGAGATTTGAATGGCAACTTCTCTGAAAGCAATTAAGCATAATCTTGTCTCCTTTCCCCTTTTGAATTTGTTCGTACATTAAAAATGACAATGTTGTCTACGTGACTGCTTTCTCAAATGATGAGGTCGAATCACTGAAAATGACTATCTGGCTACTTCGGCTTTTCTGATATAGTAATATCTACCAATCATTGAGCAAGTGCAAGTATGATTGCCATGCACCTAAAATTTCTCAATTTGTAGTTCAAACCCTCAAATGATAGTGTGTGTGTAACTTTGTCTTGTGTGTTCAAGAACCCAAATGGTAGATATAGGTCTGTGAAAGATGTTCATCTAACTAGATTATAGTTGATGTTAGTTTTATCAATAAATATATTTTGAAGACAAAATTCTAATTTATAGAAGTGTTACTTATTAAGTTTATTCGACCTTGGTTCTTTGGCCTGTTGTTTTCCATTCATAAAACAATGCGGTGATGAACGTTCTTTTTCCATCAAGCTGTATCGGTTAGAGAAAAAATTGATTTCTTTTAGAATTGATATTTTTTCTTTTCAGGTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGGAAATTGAAGCAGTTCTGTTGGAGGTTGCTGCTTGTCTATCTATCTATATAAACACCCTTGGTTTCTATCAAATTTTGAATGTCCCACTCTGATATAGCTCTCAAATATATGATTTCAACAGTTGACATTAATCCCGTTTTAATCAAATTTCCTGTTCACAGCATCAAGCTATATTAGAGTGCTGTGTTTTAGGCTTGCCTGACAAAG</genome_strand>
        <mrna_strand>CCCAATCGGAAACCGTTGACGCTGATCCCGCCGGCGAGACCAA-CCCCCAACCATAGACGTATTTGAACTGTTGGGTTATTTATGAAGAAACCAAAAATTTCAACCAAGACACATTTACTATGTCACGTAACATACAGTTGTGGCAACCAAAGCTGATGGGTCGCCATAAATTGACATTTCTTGTTTTTTCTTTATAAAGAAATACTCCTCACCTAATAGTATGAGCACATTGAAATTTCTCAACTACTTCCTCTGTTCT------A-A-CTCT----TC---ATATATTCAGTATCGTTTTGCCTGTCCCAAAAATCATAGCTTTATCTCATCCCAACTTCGCCTCTTATCCTCCG................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTAGCATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATGTTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATATCATCTGCGAGGAAAATATCAAATTTGTTAAGCAAGCTAGATCTTAAAACC..........................................................................................................................................................................................................................................................................GACAAAGGCATCAAAGAAAATGAACATCACAATGGAGCAAGAGTAGGGATTGTGGCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGGACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTACCCTGAGAGTGAACTGCTACATGTGATGAATGACTCG.......................................................................................................................................................................................................................................................................................................GACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTATCTCTCATTCCTTCAATTCCCGATGTGCATTCATCAACAAAGCATGACCAGTCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAAATCAATTCCTACG.................................................................................................................GCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACAGGGAAACCAAAAGGAGTTGTCCACACACACAATGGAGTCTTAGCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATC....................................................................................................................................ATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCACG..............................................................................................GTCGACTTTGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGGACTATAATGGATAATGCCATCACAGTGTTTACTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCATCTGCTTCAGCAGCAAGGCACTTGCGTCTTATG..............................................................................................................................................................................................ATGAGTGGCTCCTCTGCACTTCCTCTGCCTGTCATGCAGCAGTGGGAAACCATTACAGGACACCGGTTATTGGAGCGTTATGGCATGACTGAG........................................................................................TTTGTGATGGCTATCTCTAATCCCATAAGTGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAG.................................................................................................................................................................GCCAAGATTCTTTTGGACGATGAAAGTAGTAATGACAAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCATTGTTCAAAGAATACTGGAAATTACCTGAG.........................................................................................................................................................................................................................................................................................................GTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGACGGATATTACATCATTCTGGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTGTCAGCATTGGAAATTGAAGCAGTTCTATTGGAG..........................................................................................................................................CATCAAGCTATATCAGAGTGCTGTGTGTTAGGCTTGCCTGACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1941" ref_strand="+" ref_description="SGN-M1941 T1349 [cos_markers]">
      <seq>tcaacttcgcctcttatcctccgctacaagtagtttaagctatatggagctggtcaaggaagttgccagcaagggacctgaatcgcagaagaatattgcgataagagctgatgaaaagagctacagttacctgcagttgatatcatctgctaggagaatttcaaatttgttaagcaagctagatcttaaaaccgacaaaggcatcaaagaaaatgaacatcacaaaggagcaagagtagggattgtggccaaaccttctgctgagttcgttgctggaatactagggacctggcttagtggaggttgtgcagttcctcttgctctgagctatcctgagagtgaactgctacatgtgatgaatgactcggacatctccataattttgagtactgaagaccaccaagaacttatgaatgcaattgcagcaaaaactggtgctcagttgtctctcattccttcaattcccgatgtgcattcatcaacaaaacatgaccaatcaaaagacatggtttctgacggtcaacaagatctgctagagatcaattcctatggcgagaaccctgcttttatcttgtacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3769" stop="5989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4068" g_stop="4090" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4091" i_stop="4458" i_length="368">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4459" g_stop="4628" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="193" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4629" i_stop="4894" i_length="266">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4895" g_stop="5068" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="367" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5069" i_stop="5363" i_length="295">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5364" g_stop="5547" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="551" r_length="184" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5548" i_stop="5660" i_length="113">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5661" g_stop="5689" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="580" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-M1941" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4068" e_stop="4090"/>
          <exon e_start="4459" e_stop="4628"/>
          <exon e_start="4895" e_stop="5068"/>
          <exon e_start="5364" e_stop="5547"/>
          <exon e_start="5661" e_stop="5689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTTCGCCTCTTATCCTCCGGTAAGTTGAGGAATTTCGATTATCTCGATATAAGTTATTGTAAATTGGTATGTGTTCATCCAATATAGAAATGGGGTTCACTTGATTTTGAGATTTGGGGTGGTGTTTGTTTGGGAAAATGTTAAAGAAATGGAAGCGTATCAATTGTTTGAAGAAATGTTTGTTTGAGTCAGCTTCACTCGATTATGGATTTTTGACAGCTAGTGCTCGATGAATTAGAAATATGAGAAGATAAAATGATCTTAAAATTTGAAAAAGGGGCAATTTTGATCTTTGGGGATTTCCGACTTTGTTTTCCTTGATCATATTAGGTTTAGGATCAGTAGAAATAAATTATAAGTCTTATGAATTTCATTGGCTATTTTCAGCTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACCGTGAGTTGGAAATGACGAATTATCTATGAATAACTAAAGCTGCATGAATTTGTGTTTCTATTGAATAGTGTAAATTAAATGAAAGTTTTCTTTTCCCAGTTGTAATGTTTAGTCGACAATTATATTGTTTACGAAATTCATTCAATGTGAGTCCTTCACCCCACATTATCTTTTTCATCTGGATATATTGCTCTTCCAATTCCAAGGTCAGTCTACAGAATTTACTTCCGTTATTGCTTTCTGCTCAGTTGCTTCTACTTTTTCAGGACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCGGTCTGTCTCTGAATCTTTGTTCTTCTCCCTCACTGTTTCATGTCAGTAAAGTGTTTTATTGATAGATAATGAAGACACAAAAAAATGAATGTCTTTTGCCTTTTGAAATGCTCAATATTAATGACATAGATTGCATTATTTGTCATGCCTTGCTATCTGTCTGTAGATGATTAGCTCATGTTCAATTAGGCTGAATATTACCTGTCTGCATGATGTAGAAACACTGCAATGTCCTCTTCACTGTTTTTTTCCTCTTTTATGCTTATTTAATTCATTGTGAAACATTGATTTCTAGGACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATGGTGAGATAATGGGTAATTTGTCTGTTTCTCTATATGGTTATATATTTTCCCATTTGAGATGTTTGGAGCTCATCAATAGCATTTTCCTTTGTTCTGTACATGTTATCTTTAAGGCGAGAACCCTGCTTTTATCTTGTACACC</genome_strand>
        <mrna_strand>TCAACTTCGCCTCTTATCCTCCG................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTAGTTTAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATATCATCTGCTAGGAGAATTTCAAATTTGTTAAGCAAGCTAGATCTTAAAACC..........................................................................................................................................................................................................................................................................GACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGGCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGGACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCG.......................................................................................................................................................................................................................................................................................................GACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCCGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCCTATG.................................................................................................................GCGAGAACCCTGCTTTTATCTTGTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2986" ref_strand="+" ref_description="SGN-M2986 cLET-8-G15 [est_clones]">
      <seq>ggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatggcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-9GXdT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="81327" stop="82602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81627" g_stop="81741" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82001" g_stop="82301" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="416" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="426"/>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-M2986" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M2986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81627" e_stop="81741"/>
          <exon e_start="82001" e_stop="82301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGC</genome_strand>
        <mrna_strand>GGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3719" PGL_stop="10168"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3719" e_stop="4090"/>
            <exon e_start="4459" e_stop="4628"/>
            <exon e_start="4895" e_stop="5068"/>
            <exon e_start="5364" e_stop="5547"/>
            <exon e_start="5661" e_stop="5749"/>
            <exon e_start="6280" e_stop="6349"/>
            <exon e_start="6482" e_stop="6534"/>
            <exon e_start="6629" e_stop="6736"/>
            <exon e_start="7332" e_stop="7430"/>
            <exon e_start="7621" e_stop="7713"/>
            <exon e_start="7802" e_stop="7879"/>
            <exon e_start="8041" e_stop="8145"/>
            <exon e_start="8443" e_stop="8533"/>
            <exon e_start="9226" e_stop="9299"/>
            <exon e_start="9438" e_stop="9617"/>
            <exon e_start="9902" e_stop="9955"/>
            <exon e_start="10120" e_stop="10168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.845" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.724" acc_prob="0.737" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.689" acc_prob="0.353" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.838" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.963"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="3719" e_stop="4090" e_length="372"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="4091" i_stop="4458" i_length="368"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4459" e_stop="4628" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="4629" i_stop="4894" i_length="266"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4895" e_stop="5068" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.988">
            <gDNA_intron_boundary i_start="5069" i_stop="5363" i_length="295"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5364" e_stop="5547" e_length="184"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.944">
            <gDNA_intron_boundary i_start="5548" i_stop="5660" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5661" e_stop="5749" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.845" acc_prob="0.981">
            <gDNA_intron_boundary i_start="5750" i_stop="6279" i_length="530"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6280" e_stop="6349" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6350" i_stop="6481" i_length="132"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="6482" e_stop="6534" e_length="53"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.967">
            <gDNA_intron_boundary i_start="6535" i_stop="6628" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="6629" e_stop="6736" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.828" acc_prob="0.989">
            <gDNA_intron_boundary i_start="6737" i_stop="7331" i_length="595"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="7332" e_stop="7430" e_length="99"/>
          </exon>
          <intron i_serial="9" don_prob="0.980" acc_prob="0.930">
            <gDNA_intron_boundary i_start="7431" i_stop="7620" i_length="190"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="7621" e_stop="7713" e_length="93"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="7714" i_stop="7801" i_length="88"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="7802" e_stop="7879" e_length="78"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7880" i_stop="8040" i_length="161"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="8041" e_stop="8145" e_length="105"/>
          </exon>
          <intron i_serial="12" don_prob="0.724" acc_prob="0.737">
            <gDNA_intron_boundary i_start="8146" i_stop="8442" i_length="297"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="8443" e_stop="8533" e_length="91"/>
          </exon>
          <intron i_serial="13" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8534" i_stop="9225" i_length="692"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="9226" e_stop="9299" e_length="74"/>
          </exon>
          <intron i_serial="14" don_prob="0.689" acc_prob="0.353">
            <gDNA_intron_boundary i_start="9300" i_stop="9437" i_length="138"/>
          </intron>
          <exon e_serial="15" e_score="0.994">
            <gDNA_exon_boundary e_start="9438" e_stop="9617" e_length="180"/>
          </exon>
          <intron i_serial="15" don_prob="0.959" acc_prob="0.838">
            <gDNA_intron_boundary i_start="9618" i_stop="9901" i_length="284"/>
          </intron>
          <exon e_serial="16" e_score="0.963">
            <gDNA_exon_boundary e_start="9902" e_stop="9955" e_length="54"/>
          </exon>
          <intron i_serial="16" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9956" i_stop="10119" i_length="164"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="10120" e_stop="10168" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3719" stop="4090"/>
              <exon start="4459" stop="4628"/>
              <exon start="4895" stop="5068"/>
              <exon start="5364" stop="5547"/>
              <exon start="5661" stop="5749"/>
              <exon start="6280" stop="6349"/>
              <exon start="6482" stop="6534"/>
              <exon start="6629" stop="6736"/>
              <exon start="7332" stop="7430"/>
              <exon start="7621" stop="7713"/>
              <exon start="7802" stop="7879"/>
              <exon start="8041" stop="8145"/>
              <exon start="8443" stop="8533"/>
              <exon start="9226" stop="9299"/>
              <exon start="9438" stop="9617"/>
              <exon start="9902" stop="9955"/>
              <exon start="10120" stop="10168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3734" stop="4090"/>
              <exon start="4459" stop="4628"/>
              <exon start="4895" stop="5068"/>
              <exon start="5364" stop="5547"/>
              <exon start="5661" stop="5749"/>
              <exon start="6280" stop="6349"/>
              <exon start="6482" stop="6534"/>
              <exon start="6629" stop="6736"/>
              <exon start="7332" stop="7430"/>
              <exon start="7621" stop="7713"/>
              <exon start="7802" stop="7879"/>
              <exon start="8041" stop="8145"/>
              <exon start="8443" stop="8533"/>
              <exon start="9226" stop="9299"/>
              <exon start="9438" stop="9483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7755-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4068" stop="4090"/>
              <exon start="4459" stop="4628"/>
              <exon start="4895" stop="5068"/>
              <exon start="5364" stop="5547"/>
              <exon start="5661" stop="5689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1941" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACCTGTGGCTAACCCAATCGGAAACCGACGCCGCCGATCCCGCCGGCGAGACCAACCCCCCAACCATAGACGTATTTGAACTATTTGGTTATTAATGAAGAAACCAAAAATTTCAACGAAGCCACATTTACTATGTCACGTAACATACAGTTGTGGCAACCAAAGCTGTTGGGTCGCCATAAATTGACATTTCTTGTTTTTTCTTTATAAAGAAATACTCCTCACCTAATAGTATGAGCACATTGAAAATTTTCAACTACTTTCTCAGTTCTAAGGCCACACCTCTGCACTCTTTATATATTCAGTATCATTTTTCGTGTCAAAGATATCATAGCTTTATCTCCTCGCAACTTCGCCTCTTATCCTCCG : CTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACC : GACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCG : GACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATG : GCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGAGTCTTAGCACAG : GTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATC : ATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCACG : GTCGACTTCGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGGACTATAACAGATAATGCCATTACGGTGTTTACTGGA : GTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATG : ATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAG : TTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAG : GCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAG : GTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGAC : GTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGGAAATTGAAGCAGTTCTGTTGGAG : CATCAAGCTATATTAGAGTGCTGTGTTTTAGGCTTGCCTGACAAAGACTATGGCGAAGTGGTATGTGCAATAGTTGTGCCTGAGGCTGAAGTTAAAAGAAGACGAGATGAGGAGCTAAAGCCTGCACTAACCTTGCACGAACTTTCTGATTGGGCGAAGGAGAAGCTTGCCCCATACAAG : ATACCAACTCGTCTGTTTCTGTGGGAATCTCTGCCTCGAAATGCGATGGGAAAG : GTAAACAAGAAAGAGCTAAAAAGGAAGCTGACTGAAGATCCCAAATGAG</gDNA_template>
            <first_frame> S  T  C  G  *  P  N  R  K  P  T  P  P  I  P  P  A  R  P  T  P  Q  P  *  T  Y  L  N  Y  L  V  I  N  E  E  T  K  N  F  N  E  A  T  F  T  M  S  R  N  I  Q  L  W  Q  P  K  L  L  G  R  H  K  L  T  F  L  V  F  S  L  *  R  N  T  P  H  L  I  V  *  A  H  *  K  F  S  T  T  F  S  V  L  R  P  H  L  C  T  L  Y  I  F  S  I  I  F  R  V  K  D  I  I  A  L  S  P  R  N  F  A  S  Y  P  P  :  L  Q  V  V  *  A  I  W  S  W  S  R  K  L  P  A  R  D  L  N  R  R  R  I  L  R  *  E  L  M  K  R  A  T  V  T  C  S  *  F  H  L  Q  G  E  F  Q  V  C  *  A  S  *  I  L  K  P :   T  K  A  S  K  K  M  N  I  T  K  E  Q  E  *  G  L  C  P  N  L  L  L  S  S  L  L  E  Y  *  E  P  G  L  V  E  V  V  Q  F  L  L  L  *  A  I  L  R  V  N  C  Y  M  *  *  M  T  R :   T  S  P  *  F  *  V  L  K  T  T  K  N  L  *  M  Q  L  Q  Q  K  L  V  L  S  C  L  S  F  L  Q  F  L  M  C  I  H  Q  Q  N  M  T  N  Q  K  T  W  F  L  T  V  N  K  I  C  *  R  S  I  L  M  :  A  R  T  L  L  L  S  C  T  P  A  A  Q  Q  G  N  Q  K  E  L  C  T  H  T  M  E  S  *  H  R :   S  K  C  *  L  M  H  G  N  T  R  P  R  I  N  F  C  I  V  Y  H  S  I  :  M  C  M  D  F  S  M  L  C  L  P  L  F  M  Q  V  P  R :   S  T  S  C  Q  N  S  V  *  G  E  F  G  R  D  G  V  N  H  I  L  Q  M  G  L  *  Q  I  M  P  L  R  C  L  L  E :   F  Q  L  C  M  H  D  *  Y  K  V  M  K  Q  W  I  Q  N  *  K  Q  L  L  L  Q  Q  Q  G  T  C  A  L  * :   *  V  A  P  L  H  F  L  C  P  S  C  S  S  G  K  P  L  L  D  T  G  Y  W  N  V  M  A  *  L  S :   L  *  W  Q  S  L  I  P  *  T  A  S  A  K  E  V  L  L  A  S  H  F  Q  V  C  R :   P  R  F  F  W  T  M  R  V  A  M  T  K  L  E  L  G  S  S  A  L  R  A  H  H  C  S  K  N  T  G  N  Y  L  R :   *  P  S  S  H  L  L  M  M  D  I  S  R  L  E  I  L  L  L  L  T  K  R  G  I  T  S  F  *  D  :  V  Q  M  L  I  L  *  S  L  V  D  T  N  Y  Q  R  W  K  L  K  Q  F  C  W  S :   I  K  L  Y  *  S  A  V  F  *  A  C  L  T  K  T  M  A  K  W  Y  V  Q  *  L  C  L  R  L  K  L  K  E  D  E  M  R  S  *  S  L  H  *  P  C  T  N  F  L  I  G  R  R  R  S  L  P  H  T  R :   Y  Q  L  V  C  F  C  G  N  L  C  L  E  M  R  W  E  R :   *  T  R  K  S  *  K  G  S  *  L  K  I  P  N  E </first_frame>
            <second_frame>  Q  P  V  A  N  P  I  G  N  R  R  R  R  S  R  R  R  D  Q  P  P  N  H  R  R  I  *  T  I  W  L  L  M  K  K  P  K  I  S  T  K  P  H  L  L  C  H  V  T  Y  S  C  G  N  Q  S  C  W  V  A  I  N  *  H  F  L  F  F  L  Y  K  E  I  L  L  T  *  *  Y  E  H  I  E  N  F  Q  L  L  S  Q  F  *  G  H  T  S  A  L  F  I  Y  S  V  S  F  F  V  S  K  I  S  *  L  Y  L  L  A  T  S  P  L  I  L  R :   Y  K  *  Y  K  L  Y  G  A  G  Q  G  S  C  Q  Q  G  T  *  I  A  E  E  Y  C  D  K  S  *  *  K  E  L  Q  L  P  A  V  D  F  I  C  K  E  N  F  K  F  V  K  Q  A  R  S  *  N   : R  Q  R  H  Q  R  K  *  T  S  Q  R  S  K  S  R  D  C  V  Q  T  F  C  *  V  R  C  W  N  T  R  N  L  A  *  W  R  L  C  S  S  S  C  S  E  L  S  *  E  *  T  A  T  C  D  E  *  L   : G  H  L  H  N  F  E  Y  *  R  P  P  R  T  Y  E  C  N  C  S  K  N  W  C  S  V  V  S  H  S  F  N  S  *  C  A  F  I  N  K  T  *  P  I  K  R  H  G  F  *  R  S  T  R  S  A  R  D  Q  F  L  W :   R  E  P  C  F  Y  L  V  H  Q  R  H  N  R  E  T  K  R  S  C  A  H  T  Q  W  S  L  S  T   : G  P  N  V  S  *  C  M  G  I  H  A  Q  G  S  I  S  A  L  S  T  T  P  S :   C  A  W  T  F  Q  C  F  A  C  P  S  L  C  R  F  H   : G  R  L  R  A  K  I  Q  C  E  G  N  L  A  E  M  A  *  I  I  S  Y  R  W  D  Y  N  R  *  C  H  Y  G  V  Y  W   : S  S  N  Y  V  C  T  I  D  T  R  L  *  S  N  G  S  R  T  K  N  S  F  C  F  S  S  K  A  L  A  P  Y   : D  E  W  L  L  C  T  S  S  A  R  H  A  A  V  G  N  H  Y  W  T  P  V  I  G  T  L  W  H  D  *   : V  C  D  G  N  L  *  S  H  K  R  Q  A  Q  R  R  Y  C  W  Q  A  I  S  R  C  A   : G  Q  D  S  F  G  R  C  E  *  Q  *  P  N  W  S  W  G  A  L  H  *  E  P  I  T  V  Q  R  I  L  E  I  T  *   : G  N  Q  A  V  I  Y  *  *  W  I  F  Q  D  W  R  Y  C  Y  C  *  R  R  G  V  L  H  H  S  R  T :   Y  K  C  *  Y  Y  E  V  W  W  I  Q  I  I  S  V  G  N  *  S  S  S  V  G   : A  S  S  Y  I  R  V  L  C  F  R  L  A  *  Q  R  L  W  R  S  G  M  C  N  S  C  A  *  G  *  S  *  K  K  T  R  *  G  A  K  A  C  T  N  L  A  R  T  F  *  L  G  E  G  E  A  C  P  I  Q   : D  T  N  S  S  V  S  V  G  I  S  A  S  K  C  D  G  K   : G  K  Q  E  R  A  K  K  E  A  D  *  R  S  Q  M   </second_frame>
            <third_frame>   N  L  W  L  T  Q  S  E  T  D  A  A  D  P  A  G  E  T  N  P  P  T  I  D  V  F  E  L  F  G  Y  *  *  R  N  Q  K  F  Q  R  S  H  I  Y  Y  V  T  *  H  T  V  V  A  T  K  A  V  G  S  P  *  I  D  I  S  C  F  F  F  I  K  K  Y  S  S  P  N  S  M  S  T  L  K  I  F  N  Y  F  L  S  S  K  A  T  P  L  H  S  L  Y  I  Q  Y  H  F  S  C  Q  R  Y  H  S  F  I  S  S  Q  L  R  L  L  S  S   : A  T  S  S  I  S  Y  M  E  L  V  K  E  V  A  S  K  G  P  E  S  Q  K  N  I  A  I  R  A  D  E  K  S  Y  S  Y  L  Q  L  I  S  S  A  R  R  I  S  S  L  L  S  K  L  D  L  K  T  :  D  K  G  I  K  E  N  E  H  H  K  G  A  R  V  G  I  V  S  K  P  S  A  E  F  V  A  G  I  L  G  T  W  L  S  G  G  C  A  V  P  L  A  L  S  Y  P  E  S  E  L  L  H  V  M  N  D  S  :  D  I  S  I  I  L  S  T  E  D  H  Q  E  L  M  N  A  I  A  A  K  T  G  A  Q  L  S  L  I  P  S  I  P  D  V  H  S  S  T  K  H  D  Q  S  K  D  M  V  S  D  G  Q  Q  D  L  L  E  I  N  S  Y   : G  E  N  P  A  F  I  L  Y  T  S  G  T  T  G  K  P  K  G  V  V  H  T  H  N  G  V  L  A  Q  :  V  Q  M  L  A  N  A  W  E  Y  T  P  K  D  Q  F  L  H  C  L  P  L  H   : H  V  H  G  L  F  N  A  L  L  A  P  L  Y  A  G  S  T  :  V  D  F  V  P  K  F  S  V  R  G  I  W  Q  R  W  R  E  S  Y  P  T  D  G  T  I  T  D  N  A  I  T  V  F  T  G  :  V  P  T  M  Y  A  R  L  I  Q  G  Y  E  A  M  D  P  E  L  K  T  A  S  A  S  A  A  R  H  L  R  L  M  :  M  S  G  S  S  A  L  P  L  P  V  M  Q  Q  W  E  T  I  T  G  H  R  L  L  E  R  Y  G  M  T  E  :  F  V  M  A  I  S  N  P  I  N  G  K  R  K  G  G  T  V  G  K  P  F  P  G  V  Q  :  A  K  I  L  L  D  D  A  S  S  N  D  Q  T  G  V  G  E  L  C  I  K  S  P  S  L  F  K  E  Y  W  K  L  P  E  :  V  T  K  Q  S  F  T  D  D  G  Y  F  K  T  G  D  T  V  T  V  D  E  E  G  Y  Y  I  I  L  G   : R  T  N  A  D  I  M  K  F  G  G  Y  K  L  S  A  L  E  I  E  A  V  L  L  E  :  H  Q  A  I  L  E  C  C  V  L  G  L  P  D  K  D  Y  G  E  V  V  C  A  I  V  V  P  E  A  E  V  K  R  R  R  D  E  E  L  K  P  A  L  T  L  H  E  L  S  D  W  A  K  E  K  L  A  P  Y  K  :  I  P  T  R  L  F  L  W  E  S  L  P  R  N  A  M  G  K  :  V  N  K  K  E  L  K  R  K  L  T  E  D  P  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3904" stop="4090"/>
                    <exon start="4459" stop="4628"/>
                    <exon start="4895" stop="5068"/>
                    <exon start="5364" stop="5547"/>
                    <exon start="5661" stop="5749"/>
                    <exon start="6280" stop="6349"/>
                    <exon start="6482" stop="6534"/>
                    <exon start="6629" stop="6736"/>
                    <exon start="7332" stop="7430"/>
                    <exon start="7621" stop="7713"/>
                    <exon start="7802" stop="7879"/>
                    <exon start="8041" stop="8145"/>
                    <exon start="8443" stop="8533"/>
                    <exon start="9226" stop="9299"/>
                    <exon start="9438" stop="9617"/>
                    <exon start="9902" stop="9955"/>
                    <exon start="10120" stop="10167"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1854</number_coding_nucleotides>
                  <number_encoded_amino_acids>618</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDISCFFFIKKYSSPNSMSTLKIFNYFLSSKATPLHSLYIQYHFSCQRYHSFISSQLRLLSSATSSISYMELVKEVASKGPESQKNIAIRADEKSYSYLQLISSARRISSLLSKLDLKTDKGIKENEHHKGARVGIVSKPSAEFVAGILGTWLSGGCAVPLALSYPESELLHVMNDSDISIILSTEDHQELMNAIAAKTGAQLSLIPSIPDVHSSTKHDQSKDMVSDGQQDLLEINSYGENPAFILYTSGTTGKPKGVVHTHNGVLAQVQMLANAWEYTPKDQFLHCLPLHHVHGLFNALLAPLYAGSTVDFVPKFSVRGIWQRWRESYPTDGTITDNAITVFTGVPTMYARLIQGYEAMDPELKTASASAARHLRLMMSGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPINGKRKGGTVGKPFPGVQAKILLDDASSNDQTGVGELCIKSPSLFKEYWKLPEVTKQSFTDDGYFKTGDTVTVDEEGYYIILGRTNADIMKFGGYKLSALEIEAVLLEHQAILECCVLGLPDKDYGEVVCAIVVPEAEVKRRRDEELKPALTLHELSDWAKEKLAPYKIPTRLFLWESLPRNAMGKVNKKELKRKLTEDPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="81627" PGL_stop="82301"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81627" e_stop="81741"/>
            <exon e_start="82001" e_stop="82301"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81627" e_stop="81741" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82001" e_stop="82301" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81627" stop="81741"/>
              <exon start="82001" stop="82301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG : AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGC</gDNA_template>
            <first_frame> G  C  K  V  W  *  Q  E  C  I  F  *  F  R  G  L  G  Q  H  H  W  S  V  G  L  V  W  L  R  C  T  L  T  I  Q  L  P  S   : E  Q  V  L  R  D  L  C  C  S  F  H  Q  E  R  T  V  A  *  I  L  D  T  G  R  W  L  N  S  C  I  L  Q  F  N  S  I  R  G  Y  T  T  N  *  E  R  A  A  T  S  T  Q  A  W  S  T  R  K  D  L  I  S  F  Q  S  S  F  L  N  L  H  F  V  I  D  V  S  V  V  S  L  *  V  F  L  K  P  T  T  *  D  L  C  Y  K  K  L  N  L  M   </first_frame>
            <second_frame>  V  A  K  Y  G  D  K  S  V  Y  F  D  L  E  D  L  G  N  T  T  G  Q  W  D  L  Y  G  S  D  A  P  S  P  Y  N  S  L  Q  :  S  K  F  F  E  T  F  A  A  P  F  T  K  R  G  L  L  L  K  F  L  I  L  G  G  G  S  T  L  A  Y  F  S  S  T  A  S  G  D  I  L  P  I  K  K  G  P  Q  L  P  P  K  L  G  P  R  G  K  I  *  F  L  F  N  Q  A  F  S  T  F  I  L  *  L  M  Y  L  S  S  A  C  K  Y  S  *  S  L  Q  H  E  T  F  V  T  R  S  *  I  L  W  </second_frame>
            <third_frame>   L  Q  S  M  V  T  R  V  Y  I  L  I  *  R  T  W  A  T  P  L  V  S  G  T  C  M  A  Q  M  H  P  H  H  T  T  P  F  R :   A  S  S  S  R  P  L  L  L  L  S  P  R  E  D  C  C  L  N  S  *  Y  W  E  V  A  Q  L  L  H  T  S  V  Q  Q  H  Q  G  I  Y  Y  Q  L  R  K  G  R  N  F  H  P  S  L  V  H  A  E  R  S  N  F  F  S  I  K  L  S  Q  P  S  F  C  N  *  C  I  C  R  Q  L  V  S  I  L  E  A  Y  N  M  R  P  L  L  Q  E  V  K  S  Y  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81628" stop="81741"/>
                    <exon start="82001" stop="82180"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSSTASGDILPIKKGPQLPPKLGPRGKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 69 chains have been computed
$ 
$ memory statistics:
$ 10400 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2600 bytes was the average size of a spliced alignment
$ 7248 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3624 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 70 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 01:43:30
-->
