<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 05:56:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0260C13-wWutx/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242274" ref_strand="+" ref_description="SGN-E242274 [cLEE-3-A13]">
      <seq>tgagtcgacggatcccacgacggaccgtcatgagcacgacggaccgtggagggtgtctcgttccaaaacacttagaattctgaaatttgggtactgagatcgactctctgaacttcgcgacgaaatggcacgacggaccgtcacaggcatgacgggctgtcacaaacccttagtgaaatttaatctctgaactttgtgacggaagcagcaggacggaccgtcgcaggcacgactggtcgtcacagactgcgtaaccctgactgggtcggatttttgttaaatgttttaaggggcgttttggactattcctgcttataattatgaaattagtggtttaatgttaataattcaattacttggggggttgaaggagataaccttgaattaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0260C13.1" temp_strand="-" temp_description="C12HBa0260C13.1  AC216294.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0260C13 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="59946" stop="58955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59646" g_stop="59255" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0260C13.1" gen_strand="-" ref_id="SGN-E242274" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0260C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59646" e_stop="59255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTCGACGGATCCCACGACAGACCGTCATGGGCACGACGGACCGTCGAGGGGGGTCTCATTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAGATCGACTCTCTGAACTTCGTGACGACATGGCAGGACGGACCCTCGTGGGCACGACGGACCGTCACAGACCCTTAGTGAAAATTGAGTCTCTGAACTTTGTGATGGAAGCAGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGCTGCGTAAACCCTGAGTGGGTCAGATTTCTGTTAAATATTTTAAGGGGCGTTTTGGACTATTCCTGCTTATAATTATAAAGTTAGTGGTTTAATATTAATAATTCAATTACTT-GGGGGTTAAAGGAGATAACCTTGGGTTAAAT</genome_strand>
        <mrna_strand>TGAGTCGACGGATCCCACGACGGACCGTCATGAGCACGACGGACCGTGGA-GGGTGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAGATCGACTCTCTGAACTTCGCGACGAAATGGCACGACGGACCGTCACAGGCATGACGGGCTGTCACAAACCCTTAGTG-AAATTTAATCTCTGAACTTTGTGACGGAAGCAGCAGGACGGACCGTCGCAGGCACGACTGGTCGTCACAGACTGCGT-AACCCTGACTGGGTCGGATTTTTGTTAAATGTTTTAAGGGGCGTTTTGGACTATTCCTGCTTATAATTATGAAATTAGTGGTTTAATGTTAATAATTCAATTACTTGGGGGGTTGAAGGAGATAACCTTGAATTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0260C13.1" temp_strand="+" temp_description="C12HBa0260C13.1  AC216294.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0260C13 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="60062" stop="60839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60362" g_stop="60538" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0260C13.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0260C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60362" e_stop="60538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGCTTCGAAAGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGACCCCCAAATTCTATCACACATGCACGAAGCATATCTTCCAACACCTGAATTGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0260C13.1" temp_strand="+" temp_description="C12HBa0260C13.1  AC216294.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0260C13 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="61543" stop="62856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61843" g_stop="62555" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0260C13.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0260C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61843" e_stop="62555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTGGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTTCTCACTGTTTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAAAAGGACACTGAATCTATCCAAAACTCACACTTGGAGAATTTGGCATAAAGCCTTTTCTCTCTTAACACTTCCAACACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTCTTAGAGTATATCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATTAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCGAAAAGCAGTCTTTGGAACATCCGTTGCCCGTATTTTCAATTGATGATACCCGGATCTCAAGTCAATCTTAGAGAAAACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGCGATACTTGTTCTTAATAGTTACCTTGTTAAACTACCGGTAGTCTATGCATATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGAGGATGCACTTGGTCTAATAAAACCTTTACTTAACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCTGCTG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGC-TCACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0260C13.1" temp_strand="+" temp_description="C12HBa0260C13.1  AC216294.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0260C13 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="61543" stop="62738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61843" g_stop="62438" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0260C13.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0260C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61843" e_stop="62438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTGGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTTCTCACTGTTTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAAAAGGACACTGAATCTATCCAAAACTCACACTTGGAGAATTTGGCATAAAGCCTTTTCTCTCTTAACACTTCCAACACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTCTTAGAGTATATCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATTAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCGAAAAGCAGTCTTTGGAACATCCGTTGCCCGTATTTTCAATTGATGATACCCGGATCTCAAGTCAATCTTAGAGAAAACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGCGATACTTGTTCTTAATAGTTACCTTGTTAAACTACCGGTAGTCTATGCATATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0260C13.1" temp_strand="+" temp_description="C12HBa0260C13.1  AC216294.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0260C13 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="61543" stop="62668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61843" g_stop="62368" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0260C13.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0260C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61843" e_stop="62368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTGGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTTCTCACTGTTTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAAAAGGACACTGAATCTATCCAAAACTCACACTTGGAGAATTTGGCATAAAGCCTTTTCTCTCTTAACACTTCCAACACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTCTTAGAGTATATCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATTAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCGAAAAGCAGTCTTTGGAACATCCGTTGCCCGTATTTTCAATTGATGATACCCGGATCTCAAGTCAATCTTAGAGAAAACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0260C13.1" temp_strand="+" temp_description="C12HBa0260C13.1  AC216294.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0260C13 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="61614" stop="62892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61914" g_stop="62593" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0260C13.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0260C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61914" e_stop="62593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTTCTCACTGTTTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAAAAGGACACTGAATCTATCCAAAACTCACACTTGGAGAATTTGGCATAAAGCCTTTTCTCTCTTAACACTTCCAACACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTCTTAGAGTATATCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATTAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCGAAAAGCAGTCTTTGGAACATCCGTTGCCCGTATTTTCAATTGATGATACCCGGATCTCAAGTCAATCTTAGAGAAAACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGCGATACTTGTTCTTAATAGTTACCTTGTTAAACTACCGGTAGTCTATGCATATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGAGGATGCACTTGGTCTAATAAAACCTTTACTTAACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCTGCTGGAGCCATTCTATAAGGAGGTATGGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0260C13.1" temp_strand="+" temp_description="C12HBa0260C13.1  AC216294.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0260C13 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="61614" stop="62572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61914" g_stop="62272" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0260C13.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0260C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61914" e_stop="62272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTTCTCACTGTTTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAAAAGGACACTGAATCTATCCAAAACTCACACTTGGAGAATTTGGCATAAAGCCTTTTCTCTCTTAACACTTCCAACACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTCTTAGAGTATATCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATTAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCGAAAAGCAGTCTTTGGAACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0260C13.1" temp_strand="-" temp_description="C12HBa0260C13.1  AC216294.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0260C13 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="63436" stop="62175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63136" g_stop="62475" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0260C13.1" gen_strand="-" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0260C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63136" e_stop="62475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACCCTGGATCCACATTTTCATATGTATCTTTCGCATTTGCTACTGGACTTAATTTAAATTGTTAATTGCTTGACATGCCTATTCATGTTTCTATTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCCTGTCTTGTAAATTTTGTGAGGAGCAATACTCATGTAGACTTCGTTATCTTAGAAATGGTTGATTTCGATGTAATTCTAGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTTTAACGTTGGCCAAGCTTGGGACAGATCTGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTTCCTTCCTTCGTGCTAAGAGAATGGTCAGAAAGGGTTGTTTAGCTTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTCCGGTAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGAATTTTACATTGATCTGGAGTCGGGTACTCGCCCCATTTCCATACCTCCTTATAGAATGGCTCCAGCAGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGTAAAGGTTTTATTAGACCAAGTGCATCCTCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGTG-GGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATC-TCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0260C13-wWutx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0260C13.1" temp_strand="+" temp_description="C12HBa0260C13.1  AC216294.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0260C13 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="62536" stop="63466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62836" g_stop="63166" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0260C13.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0260C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62836" e_stop="63166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAAGCTTGGCCAACGTTAAAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCTAGAATTACATCGAAATCAACCATTTCTAAGATAACGAAGTCTACATGAGTATTGCTCCTCACAAAATTTACAAGACAGGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAATAGAAACATGAATAGGCATGTCAAGCAATTAACAATTTAAATTAAGTCCAGTAGCAAATGCGAAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAGAATCCATACAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="59646" PGL_stop="59255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59646" e_stop="59255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="59646" e_stop="59255" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59646" stop="59255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242274" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAGTCGACGGATCCCACGACAGACCGTCATGGGCACGACGGACCGTCGAGGGGGGTCTCATTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAGATCGACTCTCTGAACTTCGTGACGACATGGCAGGACGGACCCTCGTGGGCACGACGGACCGTCACAGACCCTTAGTGAAAATTGAGTCTCTGAACTTTGTGATGGAAGCAGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGCTGCGTAAACCCTGAGTGGGTCAGATTTCTGTTAAATATTTTAAGGGGCGTTTTGGACTATTCCTGCTTATAATTATAAAGTTAGTGGTTTAATATTAATAATTCAATTACTTGGGGGTTAAAGGAGATAACCTTGGGTTAAAT</gDNA_template>
            <first_frame> *  V  D  G  S  H  D  R  P  S  W  A  R  R  T  V  E  G  G  L  I  P  K  H  L  E  F  *  N  L  G  T  E  I  D  S  L  N  F  V  T  T  W  Q  D  G  P  S  W  A  R  R  T  V  T  D  P  *  *  K  L  S  L  *  T  L  *  W  K  Q  Q  D  G  P  S  Q  A  R  R  A  V  T  G  C  V  N  P  E  W  V  R  F  L  L  N  I  L  R  G  V  L  D  Y  S  C  L  *  L  *  S  *  W  F  N  I  N  N  S  I  T  W  G  L  K  E  I  T  L  G  *   </first_frame>
            <second_frame>  E  S  T  D  P  T  T  D  R  H  G  H  D  G  P  S  R  G  V  S  F  Q  N  T  *  N  S  E  I  W  V  L  R  S  T  L  *  T  S  *  R  H  G  R  T  D  P  R  G  H  D  G  P  S  Q  T  L  S  E  N  *  V  S  E  L  C  D  G  S  S  R  T  D  R  R  R  H  D  G  P  S  Q  A  A  *  T  L  S  G  S  D  F  C  *  I  F  *  G  A  F  W  T  I  P  A  Y  N  Y  K  V  S  G  L  I  L  I  I  Q  L  L  G  G  *  R  R  *  P  W  V  K  </second_frame>
            <third_frame>   S  R  R  I  P  R  Q  T  V  M  G  T  T  D  R  R  G  G  S  H  S  K  T  L  R  I  L  K  F  G  Y  *  D  R  L  S  E  L  R  D  D  M  A  G  R  T  L  V  G  T  T  D  R  H  R  P  L  V  K  I  E  S  L  N  F  V  M  E  A  A  G  R  T  V  A  G  T  T  G  R  H  R  L  R  K  P  *  V  G  Q  I  S  V  K  Y  F  K  G  R  F  G  L  F  L  L  I  I  I  K  L  V  V  *  Y  *  *  F  N  Y  L  G  V  K  G  D  N  L  G  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0260C13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="60362" PGL_stop="60538"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60362" e_stop="60538"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="60362" e_stop="60538" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60362" stop="60538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGCTTCGAAAGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGACCCCCAAATTCTATCACACATGCACGAAGCATATCTTCCAACACCTGAATTGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  K  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  R  K  E  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  D  P  Q  I  L  S  H  M  H  E  A  Y  L  P  T  P  E  L  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  E  R  S  H  I  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  T  P  K  F  Y  H  T  C  T  K  H  I  F  Q  H  L  N  C  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0260C13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="61843" PGL_stop="62593"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61843" e_stop="62593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="61843" e_stop="62593" e_length="751"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61843" stop="62555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61843" stop="62438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61843" stop="62368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61914" stop="62593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61914" stop="62272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAATAGCTGGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTTCTCACTGTTTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAAAAGGACACTGAATCTATCCAAAACTCACACTTGGAGAATTTGGCATAAAGCCTTTTCTCTCTTAACACTTCCAACACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTCTTAGAGTATATCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATTAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCGAAAAGCAGTCTTTGGAACATCCGTTGCCCGTATTTTCAATTGATGATACCCGGATCTCAAGTCAATCTTAGAGAAAACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGCGATACTTGTTCTTAATAGTTACCTTGTTAAACTACCGGTAGTCTATGCATATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGAGGATGCACTTGGTCTAATAAAACCTTTACTTAACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCTGCTGGAGCCATTCTATAAGGAGGTATGGAAATGGGGCGAGTA</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  A  G  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  S  H  C  F  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  K  G  H  *  I  Y  P  K  L  T  L  G  E  F  G  I  K  P  F  L  S  *  H  F  Q  H  N  S  Q  M  L  L  M  F  L  L  T  L  R  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  *  S  S  R  G  I  R  K  T  K  R  H  Y  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  N  I  R  C  P  Y  F  Q  L  M  I  P  G  S  Q  V  N  L  R  E  N  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  N  A  I  L  V  L  N  S  Y  L  V  K  L  P  V  V  Y  A  Y  P  K  T  P  I  L  L  L  H  K  *  H  R  S  T  P  R  G  C  T  W  S  N  K  T  F  T  *  Q  L  L  K  L  G  L  *  L  P  *  L  C  W  S  H  S  I  R  R  Y  G  N  G  A  S  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  L  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  E  S  I  Q  N  S  H  L  E  N  L  A  *  S  L  F  S  L  N  T  S  N  T  I  L  K  C  S  S  C  S  F  L  L  L  E  Y  I  N  I  S  S  I  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  I  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  Y  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  M  R  Y  L  F  L  I  V  T  L  L  N  Y  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  N  T  G  A  P  Q  E  D  A  L  G  L  I  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  M  E  M  G  R  V </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  S  W  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  F  S  L  F  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  K  R  T  L  N  L  S  K  T  H  T  W  R  I  W  H  K  A  F  S  L  L  T  L  P  T  Q  F  S  N  A  P  H  V  P  S  Y  S  *  S  I  S  I  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  R  S  S  S  S  L  K  Q  Q  G  H  S  *  D  Q  K  T  L  L  Q  I  R  N  A  H  T  W  F  E  K  Q  S  L  E  H  P  L  P  V  F  S  I  D  D  T  R  I  S  S  Q  S  *  R  K  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  C  D  T  C  S  *  *  L  P  C  *  T  T  G  S  L  C  I  S  E  N  S  H  P  S  S  S  Q  I  T  P  E  H  P  K  R  M  H  L  V  *  *  N  L  Y  L  T  T  L  E  V  G  P  L  T  P  L  T  L  L  E  P  F  Y  K  E  V  W  K  W  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0260C13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62039" stop="62236"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFSLNTSNTILKCSSCSFLLLEYINISSINTITKRSRYGLKIPFIKLIKAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="63136" PGL_stop="62475"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63136" e_stop="62475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="63136" e_stop="62475" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63136" stop="62475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGACCCTGGATCCACATTTTCATATGTATCTTTCGCATTTGCTACTGGACTTAATTTAAATTGTTAATTGCTTGACATGCCTATTCATGTTTCTATTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCCTGTCTTGTAAATTTTGTGAGGAGCAATACTCATGTAGACTTCGTTATCTTAGAAATGGTTGATTTCGATGTAATTCTAGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTTTAACGTTGGCCAAGCTTGGGACAGATCTGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTTCCTTCCTTCGTGCTAAGAGAATGGTCAGAAAGGGTTGTTTAGCTTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTCCGGTAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGAATTTTACATTGATCTGGAGTCGGGTACTCGCCCCATTTCCATACCTCCTTATAGAATGGCTCCAGCAGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGTAAAGGTTTTATTAGACCAAGTGCATCCTCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  F  A  F  A  T  G  L  N  L  N  C  *  L  L  D  M  P  I  H  V  S  I  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  N  F  V  R  S  N  T  H  V  D  F  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  L  T  L  A  K  L  G  T  D  L  L  V  W  E  G  D  Y  T  S  T  P  V  R  I  I  F  L  P  S  C  *  E  N  G  Q  K  G  L  F  S  F  L  G  T  S  Q  G  *  Y  Y  P  S  T  F  N  *  V  G  S  G  S  P  *  V  S  G  C  V  S  C  R  P  S  W  Y  A  T  G  *  R  Y  *  I  L  H  *  S  G  V  G  Y  S  P  H  F  H  T  S  L  *  N  G  S  S  R  V  K  G  V  K  G  P  T  S  R  V  V  K  *  R  F  Y  *  T  K  C  I  L  L   </first_frame>
            <second_frame>  L  T  L  D  P  H  F  H  M  Y  L  S  H  L  L  L  D  L  I  *  I  V  N  C  L  T  C  L  F  M  F  L  F  R  W  V  S  L  *  *  L  K  R  C  I  G  P  V  L  *  I  L  *  G  A  I  L  M  *  T  S  L  S  *  K  W  L  I  S  M  *  F  *  V  *  L  G  F  L  Q  I  L  Q  S  W  I  V  M  L  K  L  *  R  W  P  S  L  G  Q  I  C  *  C  G  R  V  T  T  L  P  L  Q  F  V  S  S  S  F  L  R  A  K  R  M  V  R  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  P  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  E  F  Y  I  D  L  E  S  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  S  W  </second_frame>
            <third_frame>   *  P  W  I  H  I  F  I  C  I  F  R  I  C  Y  W  T  *  F  K  L  L  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  K  G  V  *  V  L  S  C  K  F  C  E  E  Q  Y  S  C  R  L  R  Y  L  R  N  G  *  F  R  C  N  S  R  Y  D  L  A  F  S  K  F  C  N  L  G  L  *  C  *  N  F  N  V  G  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  H  S  S  S  Y  H  L  P  S  F  V  L  R  E  W  S  E  R  V  V  *  L  S  W  H  I  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  S  V  S  F  W  M  C  F  L  Q  T  F  L  V  C  H  R  I  E  I  L  N  F  T  L  I  W  S  R  V  L  A  P  F  P  Y  L  L  I  E  W  L  Q  Q  S  *  G  S  *  R  P  N  F  K  S  C  *  V  K  V  L  L  D  Q  V  H  P  L  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0260C13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62829" stop="62476"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGRVTTLPLQFVSSSFLRAKRMVRKGCLAFLAHLRDDTTQVPSIESVPVVREFLDVFPADLPGMPPDRDIEFYIDLESGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASSW</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0260C13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63067" stop="62771"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLDMPIHVSIPVGESVIVEKVYRSCLVNFVRSNTHVDFVILEMVDFDVILGMTWLSPNFAILDCNAKTLTLAKLGTDLLVWEGDYTSTPVRIIFLPSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="62836" PGL_stop="63166"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62836" e_stop="63166"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="62836" e_stop="63166" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="63166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCCCAAGCTTGGCCAACGTTAAAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCTAGAATTACATCGAAATCAACCATTTCTAAGATAACGAAGTCTACATGAGTATTGCTCCTCACAAAATTTACAAGACAGGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAATAGAAACATGAATAGGCATGTCAAGCAATTAACAATTTAAATTAAGTCCAGTAGCAAATGCGAAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAGAATCCATACAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  P  T  L  K  F  *  H  Y  N  P  R  L  Q  N  L  E  K  A  K  S  Y  L  E  L  H  R  N  Q  P  F  L  R  *  R  S  L  H  E  Y  C  S  S  Q  N  L  Q  D  R  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  N  N  L  N  *  V  Q  *  Q  M  R  K  I  H  M  K  M  W  I  Q  G  Q  I  I  Q  N  P  Y  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  K  L  G  Q  R  *  S  F  S  I  T  I  Q  D  C  K  I  W  R  K  P  S  H  T  *  N  Y  I  E  I  N  H  F  *  D  N  E  V  Y  M  S  I  A  P  H  K  I  Y  K  T  G  P  I  H  L  F  N  Y  H  R  L  T  H  R  N  R  N  M  N  R  H  V  K  Q  L  T  I  *  I  K  S  S  S  K  C  E  R  Y  I  *  K  C  G  S  R  V  K  *  Y  R  I  H  T  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  S  L  A  N  V  K  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  L  T  K  F  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  I  E  T  *  I  G  M  S  S  N  *  Q  F  K  L  S  P  V  A  N  A  K  D  T  Y  E  N  V  D  P  G  S  N  N  T  E  S  I  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0260C13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 149 chains have been computed
$ 
$ memory statistics:
$ 19896 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 2210 bytes was the average size of a spliced alignment
$ 10232 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2046 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 175 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 05:58:43
-->
