<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 22:06:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548045" ref_strand="+" ref_description="SGN-E548045 [TUS-57-I11](-)">
      <seq>ccagcattgctccgttagttgcagctcagtcgagcttcttgtggaggctttgtggaggtgtgacatcctctccttaaaaaccacaaagggcacaaggaaatgcattcgaaatggtcaaaacgaataagcagaaagctaaattggttcattcagcctggcaattacagaagcaaacatgagtgttctttttttagcccgtatatattcgtggctatctaatacttcagtgtctcggttgttttccaggacgctatggcatacatctttttcccaccattttttgcagggcttcgtcaaatcgaaaccctgtttcagccatttttggagacttacctccatcatgccatggtctcctgagaatacagtcacctagtactgagattaaaattttcactcatgctgctcctcgagagccaggcggtttgaatcattcagctaaaactgcgatagacaagattcatcgcgcatttgcctcttttgtgcttagctacattgcaggaatcagacactagttgtgtagttttttttcatgttcaagagtctttagtgttttcactgtaagtattctattatgtgtcttttagtctttagttgctttgagcaaatttctgttgttgtggtgcctgttattcccaggggcttggccattacaaccttatataggttgtttttttaaccagtccctagttttttgataggattatcaatgtcctatttttttaccaggttccatatattcagatttgtactccttgccgctatgttttttttttctatatataatgaagtaatagtttgtttgtcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="2983" stop="1573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2683" g_stop="1869" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="817" r_length="817" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E548045" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2683" e_stop="1869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCC-TAAAC-CCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTGTTTGTCTTAAAACAACGTT</genome_strand>
        <mrna_strand>CCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTTAAAAACCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTGTTTGTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538747" ref_strand="+" ref_description="SGN-E538747 [TUS-58-C11](-)">
      <seq>cattgctccgttagtgccagctcagtcgagcttcttgtggaggctttgtggaggtgtgacatcctctcctaaacccacaaagggcacaaggaaatgcattcgaaatggtcaaaacgaataagcagaaagctaaattggttcattcagcctggcaattacagaagcaaacatgagtgttctttttttagcccgtatatattcgtggctatctaatacttcagtgtctcggttgttttccaggacgctatggcatacatctttttcccaccattttttgcagggcttcgtcaaatcgaaaccctgtttcagccatttttggagacttacctccatcatgccatggtctcctgagaatacagtcacctagtactgagattaaaattttcactcatgctgctcctcgagagccaggcggtttgaatcattcagctaaaactgcgatagacaagattcatcgcgcatttgcctcttttgtgcttagctacattgcaggaatcagacactagttgtgtagttttttttcatgttcaagagtctttagtgttttcactgtaagtattctattatgtgtcttttagtctttagttgctttgagcaaatttctgttgttgtggtgcctgttattcccaggggcttggccattacaaccttatataggttgtttttttaaccagtccctagttttttgataggattatcaatgtcctatttttttaccaggttccatatattcagatttgtactccttgccgctatgttttttttttctatatataatgaagtaatagtttgttgtcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="2979" stop="1573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2679" g_stop="1869" g_length="811"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="810" r_length="810" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E538747" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2679" e_stop="1869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTGTTTGTCTTAAAACAACGTT</genome_strand>
        <mrna_strand>CATTGCTCCGTTAGTGCCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTG-TTGTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710453" ref_strand="+" ref_description="SGN-E710453 [FA55BH07]">
      <seq>ggttgctccatggtatcgaacaagagtgtcctttctcttaaaaagttaggagagaatctactcggcttgaatctccattgctccgttagttgcagctcagtcgagcttcttgtggaggctttgtggaggtgtgacatcctctcctaaacccacaaagggcacaaggaaatgcattcgaaatggtcaaaacgaataagcagaaagctaaattggttcattcagcctggcaattacagaagcaaacatgagtgttctttttttagcccgtatatattcgtggctatctaatacttcagtgtctcggttgttttccaggacgctatggcatacatctttttcccaccattttttgcagggcttcgtcaaatcgaaaccctgtttcagccatttttggagacttacctccatcatgccatggtctcctgagaatacagtcacctagtactgagattaaaattttcactcatgctgctcctcgagagccaggcggtttgaatcattcagctaaaactgcgatagacaagattcatcgcgcatttgcctcttttgtgcttagctacattgcaggaatcagacactagttgtgtagttttttttcatgttcaagagtctttagtgttttcactgtaagtattctattatgtgtcttttagtctttagttgctttgagcaaatttctgttgttgtggtgcctgttattcccaggggcttggccattacaaccttatataggttgtttttttaaccagtccctagttttttgataggattatcaatgtcctatttttttaccaggttccatatattcagatttgtactccttgccgctatgttttttttttctatataaaatgaagaaatagtttgtttgtcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3057" stop="1573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2757" g_stop="1870" g_length="888"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="885" r_length="885" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E710453" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2757" e_stop="1870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTGTTTGTCTTAAAACAACGT</genome_strand>
        <mrna_strand>GGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCA---TTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATAAAATGAAGAAATAGTTTGTTTGTCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745031" ref_strand="+" ref_description="SGN-E745031 [GI|83584401]">
      <seq>taacctcaatctttctttctctctctatttttttgccctactctgttggggttctttaaaaatctgtatttttgagggttcttgaaaaaaaattggattttttcatctggaatgcgaatcttggttaaggatataatctgggttgtgtttttcttggttcaaaatctgatcttttttgctttacagtttgggattgaagaacaatcatgcctactcttgttaattacagtggtgatgatgagttctactctggtggatcgttttgttctgcagatttgggtctcatgttgtctttgggtcatgctgatgtttactgtcctcctaggaagagggcaagaattagtggcccgtttgttgtcgaagaccgatcaaaggatccatctcttgaggttcttcctgatgaatgcctatttgagatcctcagacgattgcctggaggccgagaaaggggtgcagcagcttgtgtttctaagcgctggcttacagtgttgagtagcgtgaaaaactctgaaatttgcaggagcaagagctataacaatctaaatgacgctataatgatctctaaagatgaagatcttgaagttgaatgtgatggataccttaccaggtgtgtggaagggaagaaagctactgatattagacttgctgcaattgcagttgggacgtctacccgtggtggactaggaaagctttctattcgagggagtaactcagttcgtggtattactaatgtcggtctatctgctgttgcacatgggtgtccttctcttagggtcctatcattgtggaatgttccttctatcggagatgaaggtctcttggaggttgcaagagaatgccattcattagaaaagctagatctgagccactgtcgttcaatctccaacaagggtcttgttgcaatagcagagaattgccctagcttgacttcattgactattgaatcctgtccaaatattggaaacgaaggcttgcaagctgttggaaaatactgcaccaaactacagtctcttacaattaaggactgcccgcttgtcggagatcagggagttgctagtcttctgtcatcaggtgcttcaatgttaacaaaagtgaaactacatggtctaaacattaccgatttctcgcttgctgtcattggtcactacggcaagctgattaccagtcttaatctttgttcacttcgtaatgtgagtcagaagggattttgggtcatgggtaatgctcaaggcctccagtctttggtttctttgacaatcaccttatgccagggagccactgatgtcggtcttgaagctgtgggaaagggatgcccaaatctcaaatatatgtgcattcgcaagtgttgctttgtttctgacggtggtcttgttgctttcgctaaagaggctggatctctcgagagtttaatcttggaggagtgcaacagaattacccaagtaggtatccttaatgcagtttcaaactgcaggaagttaaagtctctttccctagtgaagtgcatgggaatcaaggatctagctctacaaacttccatgctgtctccatgtgaatctcttcggtccttgtctatccgaagctgtccaggattcgggagcagtagcttagctatggttggtaagctctgccccaagctgcatcaattagatctcagtgggctttgtggaataaccgatgctggtcttctcccactcttggagaactgtgaaggacttgttaaggtgaaccttagcgactgcctgaacttgacagaccaagtggtgctttcattggctatgcgacatggcgagacccttgaattgttgaatctcgacggatgcaggaaggttaccgatgcaagtttagtggcaattgcagattattgcccattacttattgatcttgatgtttctaagagtgcaataactgattctggtgtagctgctttatcccgtggagtgcaagtgaatttgcaggtcctttccttatcaggttgctccatggtatcgaacaagagtgtcctttctcttaaaaagttaggagagaatctactcggcttgaatctccagcattgctccgttagttgcagctcagtcgagcttcttgtggaggctttgtggaggtgtgacatcctctcctaaacccacaaagggcacaaggaaatgcattcgaaatggtcaaaacgaataagcagaaagctaaattggttcattcagcctggcaattacagaagcaaacatgagtgttctttttttagcccgtatatattcgtggctatctaatacttcagtgtctcggttgttttccaggacgctatggcatacatctttttcccaccattttttgcagggcttcgtcaaatcgaaaccctgtttcagccatttttggagacttacctccatcatgccatggtctcctgagaatacagtcacctagtactgagattaaaattttcactcatgctgctcctcgagagccaggcggtttgaatcattcagctaaaactgcgatagacaagattcatcgcgcatttgcctcttttgtgcttagctacattgcaggaatcagacactagttgtgtagttttttttcatgttcaagagtctttagtgttttcactgtaagtattctattatgtgtcttttagtctttagttgctttgagcaaatttctgttgttgtggtgcctgttattcccaggggcttggccattacaaccttatataggttgtttttttaaccagtccctagttttttgataggattatcaatgtcctatttttttaccaggttccatatattcagatttgtactccttgccgctatgttttttttttttatatataatgaagtaatagtttgtttgtcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="5886" stop="1573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5586" g_stop="5356" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5355" i_stop="4497" i_length="859">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4496" g_stop="1872" g_length="2625"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="2856" r_length="2625" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2857" polyA_stop="2866"/>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E745031" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2856</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5586" e_stop="5356"/>
          <exon e_start="4496" e_stop="1872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCTCAATCTTTCTTTCTCTCTCTA-TTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTGAAAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTGGTGAGTTTCAAAAAAACTTCATTTCTTTGTTATTTTAAGTTATGGGGTTGTTCATATTTCAATGAATTTTGAAGTTTCAGTTACAGTTTTTTGTTTTTTTCATCATGAATTACTGAGATAGAGATTGATTTGTTATGTTTTAGATTCATGTAATTTGTTAATCATGAATAAAGTTTATAAATTTATATAGTTACATGATTGTTGAGACTGAGAAGAAGATGAATTCTATTAAGGTTTAGATCCATGAATATAGTTTATAACTATGTCTAGGTGCATGATTGTTGATAACTTGAGATGAATATGGTTTATTAATTTACTGAAATGAAGATGATCTTTTAGGTTTAGATCCAATCATGTTCCTTTTTTTAAAAGGAAGTTGGTTATGAGATAATAACTAAGTTGAGTGACTATCTAAGAAATTAACTCATATAAACTTTGTATAGATGCATGATTGTTGAGGTGAATATGAACATTAATTTACTGAAATGGATAAAAAAAGGGAAAAAAGTTGTGATGAGGCTATATATTTGGCTTTGAAGATTAATTTCTGTGTTAGATAGATCTTCTTTTGTCTTATGTTCTGAATCTATGTTAAAGATTGGTAATATATTGAAGAAACTGTGGATTACTCTTTTGGGTTCTCTATCTAGAATGATCCATCTGATCTGATCTGAAGATGTATCTACATAATAGGTAGATCTAAAGGTTTAATTTACATGTGATGGTTGTTTATCTGTTGTGAAGTTGAAGTGAAAATTCATAAGAAATGGGCATATGGACTAGACAAAATTTAGTATGCTATAGCTTGTTGATTTAAGGGAAAATATAGCTGACAGTGTATGTTCTCCTTGGATTTCAGGTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTGTTTGTCTTAAAACAAC</genome_strand>
        <mrna_strand>TAACCTCAATCTTTCTTTCTCTCTCTATTTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTG-AAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCAAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTTTATATATAATGAAGTAATAGTTTGTTTGTCTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538192" ref_strand="+" ref_description="SGN-E538192 [TUS-57-D12](-)">
      <seq>taaacccacaaagggcacaaggaaatgcattcgaaatggtcaaaacgaataagcagaaagctaaattggttcattcagcctggcaattacagaagcaaacatgagtgttctttttttagcccgtatatattcgtggctatctaatacttcagtgtctcggttgttttccaggacgctatggcatacatctttttcccaccattttttgcagggcttcgtcaaatcgaaaccctgtttcagccatttttggagacttacctccatcatgccatggtctcctgagaatacagtcacctagtactgagattaaaattttcactcatgctgctcctcgagagccaggcggtttgaatcattcagctaaaactgcgatagacaagattcatcgcgcatttgcctcttttgtgcttagctacattgcaggaatcagacactagttgtgtagttttttttcatgttcaagagtctttagtgttttcactgtaagtattctattatgtgtcttttagtctttagttgctttgagcaaatttctgttgttgtggtgcctgttattcccaggggcttggccattacaaccttatataggttgtttttttaaccagtccctagttttttgataggattatcaatgtcctatttttttaccaggttccatatattcagatttgtactccttgccgctatgttttttttttctatatataatgaagtaatagtttgttttcttaaaaaaaaaaaaaaaaaaactcgagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="2910" stop="1573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2610" g_stop="1872" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="739" polyA_stop="750"/>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E538192" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2610" e_stop="1872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTGTTTGTCTTAAAACAAC</genome_strand>
        <mrna_strand>TAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTGTTT-TCTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538266" ref_strand="+" ref_description="SGN-E538266 [TUS-57-F13](-)">
      <seq>aggaaatgcattcgaaatggtcaaaacgaataagcagaaagctaaattggttcattcagcctggcaattacagaagcaaacatgagtgttctttttttagcccgtatatattcgtggctatctaatacttcagtgtctcggttgttttccaggacgctatggcatacatctttttcccaccattttttgcagggcttcgtcaaatcgaaaccctgtttcagccatttttggagacttacctccatcatgccatggtctcctgagaatacagtcacctagtactgagattaaaattttcactcatgctgctcctcgagagccaggcggtttgaatcattcagctaaaactgcgatagacaagattcatcgcgcatttgcctcttttgtgcttagctacattgcaggaatcagacactagttgtgtagttttttttcatgttcaagagtctttagtgttttcactgtaagtattctattatgtgtcttttagtctttagttgctttgagcaaatttctgttgttgtggtgcctgttattcccaggggcttggccattacaaccttatataggttgtttttttaaccagtccctagttttttgataggattatcaatgtcctatttttttaccaggttccatatattcagatttgtactccttgccgctatgttttttttttctatatataatgaagtaatagtttgttgtcttaaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="2891" stop="1573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2591" g_stop="1872" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="720" polyA_stop="731"/>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E538266" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2591" e_stop="1872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTGTTTGTCTTAAAACAAC</genome_strand>
        <mrna_strand>AGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTG-TTGTCTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538376" ref_strand="+" ref_description="SGN-E538376 [TUS-57-I15](-)">
      <seq>ttttcccaccattttttgcagggcttcgtcaaatcgaaaccctgtttcagccatttttggagacttacctccatcatgccatggtctcctgagaatacagtcacctagtactgagattaaaattttcactcatgctgctcctcgagagccaggcggtttgaatcattcagctaaaactgcgatagacaagattcatcgcgcatttgcctcttttgtgcttagctacattgcaggaatcagacactagttgtgtagttttttttcatgttcaagagtctttagtgttttcactgtaagtattctattatgtgtcttttagtctttagttgctttgagcaaatttctgttgttgtggtgcctgttattcccaggggcttggccattacaaccttatataggttgtttttttaaccagtccctagttttttgataggattatcaatgtcctatttttttaccaggttccatatattcagatttgtactccttgccgctatgttttttttttctatatataatgaagtaatagtttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="2720" stop="1586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2420" g_stop="1886" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E538376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2420" e_stop="1886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTGTT</genome_strand>
        <mrna_strand>TTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538304" ref_strand="+" ref_description="SGN-E538304 [TUS-57-G15](-)">
      <seq>tttccaggacgctatggcatacatctttttcccaccattttttgcagggtgtcgtcaaatcgaaaccctgttttcagccatttttggagacttacctccatcatgccatggtctcctgagaatacagtcacctagtactgagattaaaattttcactcatgctgctcctcgagagccaggcggtttgaatcattcagctaaaactgcgatagacaagattcatcgcgcatttgcctcttttgtgcttagctacattgcaggaatcagacactagttgtgtagttttttttcatgttcaagagtctttagtgttttcactgtaagtattctattatgtgtcttttagtctttagttgctttgagcaaatttctgttgttgtggtgcctgttattcccaggggcttggccattacaaccttatataggttgtttttttaaccagtccctagttttttgataggattatcaatgtcctatttttttaccaggttccatatattcagatttgtactccttgccgctatgttttttttttctatatataatgaagtaatagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="2746" stop="1588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2446" g_stop="1888" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E538304" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2446" e_stop="1888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTG-TTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTG</genome_strand>
        <mrna_strand>TTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGTGTCGTCAAATCGAAACCCTGTTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538754" ref_strand="+" ref_description="SGN-E538754 [TUS-58-C15](-)">
      <seq>gagagccaggcggtttgaatcattcagctaaaactgcgatagacaagattcatcgcgcatttgcctcttttgtgcttagctacattgcaggaatcagacactagttgtgtagttttttttcatgttcaagagtctttagtgttttcactgtaagtattctattatgtgtcttttagtctttagttgctttgagcaaatttctgttgttgtggtgcctgttattcccaggggcttggccattacaaccttatataggttgtttttttaaccagtccctagttttttgataggattatcaatgtcctatttttttaccaggttccatatattcagatttgtactccttgccgctatgttttttttttctatatataatgaagtaatagtttttgctcttttaaggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="2577" stop="1576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2277" g_stop="1889" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E538754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2277" e_stop="1889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTT</genome_strand>
        <mrna_strand>GAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281756" ref_strand="-" ref_description="SGN-E281756 [cLER-14-M5]">
      <seq>tgcattcgaaatggtcaaaacgaataagcagaaagctaaattggttcattcagcctggcaattacagaagcaaacatgagtgttctttttttagcccgtatatattcgtggctatctaatacttcagtgtctcggttgttttccaggacgctatggcatacatctttttcccaccattttttgcagggcttcgtcaaatcgaaaccctgtttcagccatttttggagacttacctccatcatgccatggtctcctgagaatacagtcacctagtactgagattaaaattttcactcatgctgctcctcgagagccaggcggtttgaatcattcagctaaaactgcgatagacaagattcatcgcgcatttgcctcttttgtgcttagctacattgcaggaatcagacactagttgtgtagttttttttcatgttcaagagtctttagtgttttcactgtaagtattctattatgtgtcttttagtctttagttgctttgagcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="2885" stop="1781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2585" g_stop="2082" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="505" polyA_stop="524"/>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E281756" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281756" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2585" e_stop="2082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAA</genome_strand>
        <mrna_strand>TGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420119" ref_strand="+" ref_description="SGN-E420119 [STM-30-B18]">
      <seq>tctttatcaggttgctccatggtatcaaacaaaagtgtcccttctcttaaaaagttgggagagaatctactcggcttgaatctccaacattgctccgttagttgcagctcagtcgagcttcttgtggaggatttgtggaggtgtgacatcctctcctaaaccaaaagggcacaaggaaatgcatcgaaatggtcaaaacgaataagcagaaagctataatggttcattcagcctggcaattacagaagcaaacatgagtgttctttttttagcccgtatattcgtggctatctaatacttcagtgtctcggttgttttccaggagtctatggcatcacttttttcctccattttttgcaggcttcgtcaaatcgaagcctgtttcatccatttttggagacaactccatcatgccatggtttcctgagaatacagtcacctagtactgagattaaaattttcactcatgttgctccttgaaagaatcaggccgtttgaatcatccagctacaacatcgacagacaatatctatcgcgcatttgcctccttggtgcttagctacattgcagaaatcagacagtagttctgtagtttttcatgttcaagagtcttttagtgtttcattgtaagtattctattgtgtctctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3066" stop="1804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2766" g_stop="2104" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E420119" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2766" e_stop="2104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCG--AGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTC-TTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTT</genome_strand>
        <mrna_strand>TCTTTATCAGGTTGCTCCATGGTATCAAACAAAAGTGTCCCTTCTCTTAAAAAGTTGGGAGAGAATCTACTCGGCTTGAATCTCCAACATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGATTTGTGGAGGTGTGACATCCTCTCCTAAA-CCA-AAAGGGCACAAGGAAATGCA-TCGAAATGGTCAAAACGAATAAGCAGAAAGCTATAATGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCG--TATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGAGTCTATGGCAT-CA-CTTTTTTCCTCCATTTTTTGCA-GGCTTCGTCAAATCG-AAGCCTGTTTCATCCATTTTTGGAGAC--AACTCCATCATGCCATGGTTTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGTTGCTCCTTGAAAGAATCAGGCCGTTTGAATCATCCAGCTACAACATCGACAGACAATATCTATCGCGCATTTGCCTCCTTGGTGCTTAGCTACATTGCAGAAATCAGACAGTAGTTCTGTAG---TTTTTCATGTTCAAGAGTCTTTTAGTG-TTTCATTGTAAGTATTCTATTGTGTCTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578395" ref_strand="+" ref_description="SGN-E578395 [LE12DD05]">
      <seq>gcaggtcctttccttatcaggttgctccatggtatcgaacaagagtgtcctttctcttaaaaagttaggagagaatctactcggcttgaatctccagcattgctccgttagttgcagctcagtcgagcttcttgtggaggctttgtggaggtgtgacatcctctcctaaacccacaaagggcacaaggaaatgcattcgaaatggtcaaaacgaataagcagaaagctaaattggttcattcagcctggcaattacagaagcaaacatgagtgttctttttttagcccgtatatattcgtggctatctaatacttcagtgtctcggttgttttccaggacgctatggcatacatctttttcccaccattttttgcagggcttcgtcaaatcgaaaccctgtttcagccatttttggagacttacctccatcatgccatggtctcctgagaatacagtcacctagtactgagattaaaattttcactcatgctgctcctcgagagccaggcggtttgaatcattcagctaaaactgcgatagacaagattcatcgcgcatttgcctcttttgtgcttagctacattgcaggaatcagacactagttgggtagttttttttcatgttcaagagtctttagtgttttcactgtaagtattctattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3076" stop="1813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2776" g_stop="2113" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E578395" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2776" e_stop="2113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTAT</genome_strand>
        <mrna_strand>GCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGGGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405694" ref_strand="+" ref_description="SGN-E405694 [PPI-1-G14]">
      <seq>tctttatcaggttgctccatggtatcaaacaaaagtgtcccttctcttaaaaagttgggagagaatctactcggcttgaatctccacattgctccgttagttgcagctcagtcgagcttcttgtggaggatttgtggaggtgtgacatcctctcctaaaccaaaagggcacaaggaaatgcatcgaaatggtcaaaacgaataagcagaaagctataatggttcattcagcctggcaattacagaagcaaacatgagtgttctttttttagcccgtatattcgtggctatctaatacttcagtgtctcggttgttttccaggagtctatggcatcacttttttcctccattttttgcaggcttcgtcaaatcgaagcctgtttcatccatttttggagacaactccatcatgccatggtttcctgagaatacagtcacctagtactgagattaaaattttcactcatgttgctccttgaaagaatcaggccgtttgaatcatccagctacaacatcgacagacaatatctatcgcgcatttgcctccttggtgcttagctacattgcagaaatcagacagtagttctgtagtttttcatgttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3066" stop="1861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2766" g_stop="2150" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E405694" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2766" e_stop="2150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCG--AGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCA</genome_strand>
        <mrna_strand>TCTTTATCAGGTTGCTCCATGGTATCAAACAAAAGTGTCCCTTCTCTTAAAAAGTTGGGAGAGAATCTACTCGGCTTGAATCTCCA-CATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGATTTGTGGAGGTGTGACATCCTCTCCTAAA-CCA-AAAGGGCACAAGGAAATGCA-TCGAAATGGTCAAAACGAATAAGCAGAAAGCTATAATGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCG--TATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGAGTCTATGGCAT-CA-CTTTTTTCCTCCATTTTTTGCA-GGCTTCGTCAAATCG-AAGCCTGTTTCATCCATTTTTGGAGAC--AACTCCATCATGCCATGGTTTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGTTGCTCCTTGAAAGAATCAGGCCGTTTGAATCATCCAGCTACAACATCGACAGACAATATCTATCGCGCATTTGCCTCCTTGGTGCTTAGCTACATTGCAGAAATCAGACAGTAGTTCTGTAG---TTTTTCATGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613910" ref_strand="+" ref_description="SGN-E613910 [63690]">
      <seq>ttctcccactcttggagaactgtgaaggacttgttaaggtgaatcttagcgactgcctgaacttgacagaccaagtggtgctttcattggctacgcgacatggagagacccttgaattgttgaatctcgatggatgcaggaaggttaccgacgcaagtttagtggcaattgcagattattgcccattacttattgatcttgatgtttctaagtgtgcaataactgattctggtgtagctgctttatcccgtggagtgcaagtgaatttgcaggtcctatctttatcaggttgctccatggtatcaaacaagagtgtcccttctcttaaaaagttaggagagaatctactcggcttgaatctccaacattgctccgttagttgcagctcagtcgagcttcttgtggaggatttgtggaggtgtgacatcctctcctaaaccaaaagggcacaaggaaatgcatcgaaatggtcaaaacgaataagcagaaagctataatggttcattcagcctggcaattacagaagcaaacatgagtgttctttttttagcccgtatattcgtggctatctaatacttcagtgtctcggttgttttccaggaggctatggcatcacttttttcctccattttttgcaggcttcgtcaaatcgaagcctgtttcatccatttttggagacaactccatcatgccatggtttcctgagaatacagtcacctagtactgagattaacattttcactcatgttgctcctcgaaagaatcaggccgtttgaatcattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3344" stop="1973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3044" g_stop="2252" g_length="793"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="784" r_length="784" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E613910" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3044" e_stop="2252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCG--AGAGCCAGGCGGTTTGAATCATTCA</genome_strand>
        <mrna_strand>TTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAATCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTACGCGACATGGAGAGACCCTTGAATTGTTGAATCTCGATGGATGCAGGAAGGTTACCGACGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGTGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTATCTTTATCAGGTTGCTCCATGGTATCAAACAAGAGTGTCCCTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAACATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGATTTGTGGAGGTGTGACATCCTCTCCTAAA-CCA-AAAGGGCACAAGGAAATGCA-TCGAAATGGTCAAAACGAATAAGCAGAAAGCTATAATGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCG--TATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGAGGCTATGGCAT-CA-CTTTTTTCCTCCATTTTTTGCA-GGCTTCGTCAAATCG-AAGCCTGTTTCATCCATTTTTGGAGAC--AACTCCATCATGCCATGGTTTCCTGAGAATACAGTCACCTAGTACTGAGATTAACATTTTCACTCATGTTGCTCCTCGAAAGAATCAGGCCGTTTGAATCATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548016" ref_strand="+" ref_description="SGN-E548016 [TUS-57-D12]">
      <seq>ctgcaggaagttaaagtctctttccctagtgaagtgcatgggaatcaaggatctagctctacaaacttccatgctgtctccatgtgaatctcttcggtccttgtctatccgaagctgtccaggattcgggagcagtagcttagctatggttggtaagctctgccccaagctgcatcaattagatctcagtgggctttgtggaataaccgatgctggtcttctcccactcttggagaactgtgaaggacttgttaaggtgaaccttagcgactgcctgaacttgacagaccaagtggtgctttcattggctatgcgacatggcgagacccttgaattgttgaatctcgacggatgcaggaaggttaccgatgcaagtttagtggcaattgcagattattgcccattacttattgatcttgatgtttctaagagtgcaataactgattctggtgtagctgctttatcccgtggagtgcaagtgaatttgcaggtcctttccttatcaggttgctccatggtatcgaacaagagtgtcctttctcttaaaaagttaggagagaatctactcggcttgaatctccagcattgctccgttagttgcagctcagtcgagcttcttgtggaggctttgtggaggtgtgacatcctctcctaaacccacaaagggcacaaggaaatgcattcgaaatggtcaaaacgaataagcagaaagctaaattggttcattcagcctggcaattacagaagcaaacatgagtgttctttttttagcccgtatatattcgtggctatctaatacttcagtgtctcggttgttttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3562" stop="2141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3262" g_stop="2441" g_length="822"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="822" r_length="822" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E548016" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3262" e_stop="2441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCA</genome_strand>
        <mrna_strand>CTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538268" ref_strand="+" ref_description="SGN-E538268 [TUS-57-F13]">
      <seq>ctgcaggaagttaaagtctctttccctagtgaagtgcatgggaatcaaggatctagctctacaaacttccatgctgtctccatgtgaatctcttcggtccttgtctatccgaagctgtccaggattcgggagcagtagcttagctatggttggtaagctctgccccaagctgcatcaattagatctcagtgggctttgtggaataaccgatgctggtcttctcccactcttggagaactgtgaaggacttgttaaggtgaaccttagcgactgcctgaacttgacagaccaagtggtgctttcattggctatgcgacatggcgagacccttgaattgttgaatctcgacggatgcaggaaggttaccgatgcaagtttagtggcaattgcagattattgcccattacttattgatcttgatgtttctaagagtgcaataactgattctggtgtagctgctttatcccgtggagtgcaagtgaatttgcaggtcctttccttatcaggttgctccatggtatcgaacaagagtgtcctttctcttaaaaagttaggagagaatctactcggcttgaatctccagcattgctccgttagttgcagctcagtcgagcttcttgtggaggctttgtggaggtgtgacatcctctcctaaaccacaaagggcacaagggaatgcattcgaaatggtcaaaacgaataagcagaaagctaaattgggtcattcagccctggcattacagaagcaaacatgagtgttcttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3562" stop="2194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3262" g_stop="2494" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="768" r_length="768" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E538268" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3262" e_stop="2494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTT</genome_strand>
        <mrna_strand>CTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAA-CCACAAAGGGCACAAGGGAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGGTCATTCAGCCCTGGCATTACAGAAGCAAACATGAGTGTTCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212011" ref_strand="+" ref_description="SGN-E212011 [cLEC-66-P7]">
      <seq>ggaataaccgatgctggtcttctcccactcttggagaactgtgaaggacttgttaaggtgaaccttagcgactgcctgaacttgacagaccaagtggtgctttcattggctatgcgacatggcgagacccttgaattgttgaatctcgacggatgcaggaaggttaccgatgcaagtttagtggcaattgcagattattgcccattacttattgatcttgatgtttctaagagtgcaataactgattctggtgtagctgctttatcccgtggagtgcaagtgaatttgcaggtcctttccttatcaggttgctccatggtatcgaacaagagtgtcctttctcttaaaaagttaggagagaatctactcggcttgaatctccagcattgctccgttagttgcagctcagtcgagcttcttgtggaggctttgtggaggtgtgacatcctctcctaaacccacaaagggcacaaggaaatgcattcgaaatggtcaaaacgaataagcagaaagctaaattggttcattcagcctggcaattacagaagcaaacatgagtggtcttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3363" stop="2194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3063" g_stop="2494" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E212011" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3063" e_stop="2494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTT</genome_strand>
        <mrna_strand>GGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGGTCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262196" ref_strand="+" ref_description="SGN-E262196 [cLEG-58-L6]">
      <seq>tggagaactgtgaaggacttgttaaggtgaaccttagcgactgcctgaacttgacagaccaagtggtgctttcattggctatgcgacatggcgagacccttgaattgttgaatctcgacggatgcaggaaggttaccgatgcaagtttagtggcaattgcagattattgcccattacttattgatcttgatgtttctaagagtgcaataactgattctggtgtagctgctttatcccgtggagtgcaagtgaatttgcaggtcctttccttatcaggttgctccatggtatcgaacaagagtgtcctttctcttaaaaagttaggagagaatctactcggcttgaatctccagcattgctccgttagttgcagctcagtcgagcttcttgtggaggctttgtggaggtgtgacatcctctcctaaacccacaaagggcacaaggaaatgcattcgaaatggtcaaaacgaataagcagaaagctaaattggttcattcagcctggcaattacagaagcaaacatgagtgttctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3332" stop="2195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3032" g_stop="2495" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E262196" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3032" e_stop="2495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTT</genome_strand>
        <mrna_strand>TGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264057" ref_strand="+" ref_description="SGN-E264057 [cLEG-64-C15]">
      <seq>tggagaactgtgaaggacttgttaaggtgaaccttagcgactgcctgaacttgacagaccaagtggtgctttcattggctatgcgacatggcgagacccttgaattgttgaatctcgacggatgcaggaaggttaccgatgcaagtttagtggcaattgcagattattgcccattacttattgatcttgatgtttctaagagtgcaataactgattctggtgtagctgctttatcccgtggagtgcaagtgaatttgcaggtcctttccttatcaggttgctccatggtatcgaacaagagtgtcctttctcttaaaaagttaggagagaatctactcggcttgaatctccagcattgctccgttagttgcagctcagtcgagcttcttgtggaggctttgtggaggtgtgacatcctctcctaaacccacaaagggcacaaggaaatgcattcgaaatggtcaaaacgaataagcagaaagctaaattggttcattcagcctggcaattacagaagcaaacatgagtgttctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3332" stop="2195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3032" g_stop="2495" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E264057" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3032" e_stop="2495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTT</genome_strand>
        <mrna_strand>TGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708758" ref_strand="+" ref_description="SGN-E708758 [FA36CG06]">
      <seq>ctgattaccagtcttaatctttgttcacttcgtaatgtgagtcagaagggattttgggtcatgggtaatgctcaaggcctccagtctttggtttctttgacaatcaccttatgccagggagccactgatgtcggtcttgaagctgtgggaaagggatgcccaaatctcaaatatatgtgcattcgcaagtgttgctttgtttctgacggtggtcttgttgctttcgctaaagaggctggatctctcgagagtttaatcttggaggagtgcaacagaattacccaagtaggtatccttaatgcagtttcaaactgcaggaagttaaagtctctttccctagtgaagtgcatgggaatcaaggatctagctctacaaacttccatgctgtctccatgtgaatctcttcggtccttgtctatccgaagctgtccaggattcgggagcagtagcttagctatggttggtaagctctgccccaagctgcatcaattagatctcagtgggctttgtggaataaccgatgctggtcttctcccactcttggagaactgtgaaggacttgttaaggtgaaccttagcgactgcctgaacttgacagaccaagtggtgctttcattggctatgcgacatggcgagacccttgaattgttgaatctcgacggatgcaggaaggttaccgatgcaagtttagtggcaattgcagattattgcccattacttattgatcttgatgtttctaagagtgcaataactgattctggtgtagctgctttatcccgtggagtgcaagtgaatttgcaggtcctttccttatcaggttgctccatggtattgaacaagagtgtcctttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3873" stop="2420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3573" g_stop="2720" g_length="854"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="854" r_length="854" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E708758" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3573" e_stop="2720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCT</genome_strand>
        <mrna_strand>CTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATTGAACAAGAGTGTCCTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212366" ref_strand="+" ref_description="SGN-E212366 [cLEC-74-I4]">
      <seq>ttgaagctgtgggaaagggatgcccaaatctcaaatatatgtgcattcgcaagtgttgctttgtttctgacggtggtcttgttgctttcgctaaagaggctggatctctcgagagtttaatcttggaggagtgcaacagaattacccaagtaggtatccttaatgcagtttcaaactgcaggaagttaaagtctctttccctagtgaagtgcatgggaatcaaggatctagctctacaaacttccatgctgtctccatgtgaatctcttcggtccttgtctatccgaagctgtccaggattcgggagcagtagcttagctatggttggtaagctctgccccaagctgcatcaattagatctcagtgggctttgtggaataaccgatgctggtcttctcccactcttggagaactgtgaaggacttgttaaggtgaaccttagcgactgcctgaacttgacagaccaagtggtgctttcattggctatgcgacatggcgagacccttgaattgttgaatctcgacggatgcaggaaggttaccgatgcaagtttagtggcaattgcagattattgcccattacttattgatcttgatgtttctaagagtgcaataactgattctggtgtagctgctttatcccgtggagtgcaagtgaatttgcaggtccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3737" stop="2466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3437" g_stop="2766" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E212366" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3437" e_stop="2766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTT</genome_strand>
        <mrna_strand>TTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265254" ref_strand="+" ref_description="SGN-E265254 [cLEI-9-I13]">
      <seq>tgacggtggtcttgttgctttcgctaaagaggctggatctctcgagagtttaatcttggaggagtgcaacagaattacccaagtaggtatccttaatgcagtttcaaactgcaggaagttaaagtctctttccctagtgaagtgcatgggaatcaaggatctagctctacaaacttccatgctgtctccatgtgaatctcttcggtccttgtctatccgaagctgtccaggattcgggagcagtagcttagctatggttggtaagctctgccccaagctgcatcaattagatctcagtgggctttgtggaataaccgatgctggtcttctcccactcttggagaactgtgaaggacttgttaaggtgaaacctaaccgactgcctgaacttgacagaccaagtggtgctttcattggctatgcgacatggcgagacccttgaattgttgaatctcgacggatgcaggaaggttaccgatgcaagtttagtggcaattgcagattattgcccattacttattgatcttgatgtttctaagagtgcaataactgattctggtgtagctgctttatcccgtggagtgcaagtgaatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3670" stop="2475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3370" g_stop="2775" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E265254" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3370" e_stop="2775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTG-AACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGC</genome_strand>
        <mrna_strand>TGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAAACCTAACCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450328" ref_strand="+" ref_description="SGN-E450328 [cSTS-9-E9]">
      <seq>tggacttgttgctttcgctaaagaggctggatctcttgagagtttgatcttggaggagtgcaacagaattacccaagtaggtatccttaatgcagtttcaaactgcaggaagttgaagtctctttccctagtgaagtgcatgggaatcaaggatctagctctacaaacttccatgctgtctccatgtgaatctcttcggtccttgtctatccgaagctgtccaggattcgggagcactagtttagctatggttggtaagctctgccccaagctgcatcaattagatctcagtgggctttgtggaataactgatgctggtcttctcccactcttggagaactgtgaaggacttgttaaggtaaatcttagcgactgcctgaacttgacagaccaagtggtgctttcattggcttcgcgacatggagagacccttgaattgttgaatctcgatggatgcaggaaggttaccgatgcaagtttagtggcaattgcagattattgcccattacttatcgatcttgatgtttctaagtgtgcaataactgattctggtgtagctgctttatcccgtggagtgcaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3664" stop="2482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3364" g_stop="2782" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E450328" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3364" e_stop="2782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTG</genome_strand>
        <mrna_strand>TGGACTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTTGAGAGTTTGATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTGAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCACTAGTTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACTGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTAAATCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTTCGCGACATGGAGAGACCCTTGAATTGTTGAATCTCGATGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATCGATCTTGATGTTTCTAAGTGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304910" ref_strand="+" ref_description="SGN-E304910 [cLEX-10-M20]">
      <seq>gcaagtgttgctttgtttctgacggtggtcttgttgctttcgctaaagaggctggatctctcgagagtttaatcttggaggagtgcaacagaattacccaagtaggtatccttaatgcagtttcaaactgcaggaagttaaagtctctttccctagtgaagtgcatgggaatcaaggatctagctctacaaacttccatgctgtctccatgtgaatctcttcggtccttgtctatccgaagctgtccaggattcgggagcagtagcttagctatggttggtaagctctgccccaagctgcatcaattagatctcagtgggctttgtggaataaccgatgctggtcttctcccactcttggagaactgtgaaggacttgttaaggtgaaccttagcgactgcctgaacttgacagaccaagtggtgctttcattggctatgcgacatggcgagacccttgaattgttgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3689" stop="2618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3389" g_stop="2918" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E304910" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3389" e_stop="2918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCT</genome_strand>
        <mrna_strand>GCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409815" ref_strand="+" ref_description="SGN-E409815 [PPI-15-K17]">
      <seq>gattaaggactgcccacttgtcggagatcagggagttgctagtcttctgtcatcaggtgcttcaatgttatcgaaagtgaaactacatggtctaaacatcacagatttctcgcttgctgtcattggtcactatggcaagctgattaccagtcttaatctttgttcacttcgtaacgtgagtcagaaggggttttgggtcatgggtaatgctcaagggctccagtctctggtttctttgacaatcaccttatgccagggagccacagatgtcggtcttgaagcagtgggaaagggatgcccaaatctcaaacatatgtgcattcgcaagtgttgctttgtttctgacggtggacttgttgctttcgctaaagaggctggatctcttgagagtttgatcttggaggagtgcaacagaattacccaagtaggtatccttaatgcagtttcaaactgcaggaagttgaagtctctttccctagtgaagtgcatgggaatcaaggatctagctctacaaacttccatgctgtctccatgtgaatctcttcggtccttgtctatccgaagctgtccaggattcgggagcactagtttagctatggttggtaagctctgccccaagctgcatcaattagatctcagtgggctttgtggaataactgatgctggtcttctccactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="4011" stop="2732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3712" g_stop="3032" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E409815" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3712" e_stop="3032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTT</genome_strand>
        <mrna_strand>GATTAAGGACTGCCCACTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTATCGAAAGTGAAACTACATGGTCTAAACATCACAGATTTCTCGCTTGCTGTCATTGGTCACTATGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAACGTGAGTCAGAAGGGGTTTTGGGTCATGGGTAATGCTCAAGGGCTCCAGTCTCTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACAGATGTCGGTCTTGAAGCAGTGGGAAAGGGATGCCCAAATCTCAAACATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGACTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTTGAGAGTTTGATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTGAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCACTAGTTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACTGATGCTGGTCTTCT-CCACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252265" ref_strand="+" ref_description="SGN-E252265 [cLEG-12-M22]">
      <seq>cattaccgatttctcgcttgctgtcattggtcactacggcaagctgattaccagtcttaatctttgttcacttcgtaatgtgagtcagaagggattttgggtcatgggtaatgctcaaggcctccagtctttggtttctttgacaatcaccttatgccagggagccactgatgtcggtcttgaagctgtgggaaagggatgcccaaatctcaaatatatgtgcattcgcaagtgttgctttgtttctgacggtggtcttgttgctttcgctaaagaggctggatctctcgagagtttaatcttggaggagtgcaacagaattacccaagtaggtatccttaatgcagtttcaaactgcaggaagttaaagtctctttccctagtgaagtgcatgggaatcaaggatctagctctacaaacttccatgctgtctccatgtgaatctcttcggtccttgtctatccgaagctgtccaggattcgggagcagtagcttagctatggttggtaagctctgccccaagctgcatcaattagatctcagtgggctttgtggaataaccgatgctggtcttctcccactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3916" stop="2734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3616" g_stop="3034" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E252265" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3616" e_stop="3034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTC</genome_strand>
        <mrna_strand>CATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408119" ref_strand="+" ref_description="SGN-E408119 [PPI-10-I15]">
      <seq>ggaagatgctgcaccaaactacagtcccttacgattaaggactgcccacttgtcggagatcaaggagttgctagtcttctgtcatcaggtgcttcaatgttatcgaaagtgaaactacatggtctaaacatcacagatttctcgcttgctgtcattggtcactatggcaagctgattaccagtcttaatctttgttcacttcgtaacgtgagtcagaaggggttttgggtcatgggtaatgctcaagggctccagtctctggtttctttgacaatcaccttatgccagggagccacagatgtcggtcttgaagcagtgggaaagggatgcccaaatctcaaacatatgtgcattcgcaagtgttgctttgtttctgacggtggacttgttgctttcgctaaagaggctggatctcttgagagtttgatcttggaggagtgcaacagaattacccaagtaggtatccttaatgcagtttcaaactgcaggaagttgaagtctctttccctagtgaagtgcatgggaatcagagatctagctctacaaacttccatgctgactccatgtgaatctcttcggtccttgtctatccgaagctgtacaggattccggagcactagcttagctatggctggtaagctctgcctcaagctgcatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="4044" stop="2785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3744" g_stop="3085" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E408119" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3744" e_stop="3085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAA</genome_strand>
        <mrna_strand>GGAAGATGCTGCACCAAACTACAGTCCCTTACGATTAAGGACTGCCCACTTGTCGGAGATCAAGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTATCGAAAGTGAAACTACATGGTCTAAACATCACAGATTTCTCGCTTGCTGTCATTGGTCACTATGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAACGTGAGTCAGAAGGGGTTTTGGGTCATGGGTAATGCTCAAGGGCTCCAGTCTCTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACAGATGTCGGTCTTGAAGCAGTGGGAAAGGGATGCCCAAATCTCAAACATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGACTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTTGAGAGTTTGATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTGAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAGAGATCTAGCTCTACAAACTTCCATGCTGACTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTACAGGATTCCGGAGCACTAGCTTAGCTATGGCTGGTAAGCTCTGCCTCAAGCTGCATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371259" ref_strand="+" ref_description="SGN-E371259 [TUS-27-C3]">
      <seq>ggagatcagggagttgctagtcttctgtcatcaggtgcttcaatgttaacaaaagtgaaactacatggtctaaacattaccgatttctcgcttgctgtcattggtcactacggcaagctgattaccagtcttaatctttgttcacttcgtaatgtgagtcagaagggattttgggtcatgggtaatgctcaaggcctccagtctttggtttctttgacaatcaccttatgccagggagccactgatgtcggtcttgaagctgtgggaaagggatgcccaaatctcaaatatatgtgcattcgcaagtgttgctttgtttctgacggtggtcttgttgctttcgctaaagaggctggatctctcgagagtttaatcttggaggagtgcaacagaattacccaagtaggtatccttaatgcagtttcaaactgcaggaagttaaagtctctttccctagtgaagtgcatgggaatcaaggatctagctctacaaacttccatgctgtctccatgtgaatctcttcggtccttgtctatccgaagctgtccaggattcgggagcagtagcttagctattggtggtaagctctgccccaagctgcatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3990" stop="2785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3690" g_stop="3085" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E371259" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3690" e_stop="3085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAA</genome_strand>
        <mrna_strand>GGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATTGGTGGTAAGCTCTGCCCCAAGCTGCATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269210" ref_strand="+" ref_description="SGN-E269210 [cLEI-16-B6]">
      <seq>ggagatcagggagttgctagtcttctgtcatcaggtgcttcaatgttaacaaaagtgaaactacatggtctaaacattaccgatttctcgcttgctgtcattggtcactacggcaagctgattaccagtcttaatctttgttcacttcgtaatgtgagtcagaagggattttgggtcatgggtaatgctcaaggcctccagtctttggtttctttgacaatcaccttatgccagggagccactgatgtcggtcttgaagctgtgggaaagggatgcccaaatctcaaatatatgtgcattcgcaagtgttgctttgtttctgacggtggtcttgttgctttcgctaaagaggctggatctctcgagagtttaatcttggaggagtgcaacagaattacccaagtaggtatccttaatgcagtttcaaactgcaggaagttaaagtctctttccctagtgaagtgcatgggaatcaaggatctagctctacaaacttccatgctgtctccatgtgaatctcttcggtccttgtctatccgaagctgtccaggattcgggagcagtagcttagctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3990" stop="2816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3690" g_stop="3116" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E269210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3690" e_stop="3116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTAT</genome_strand>
        <mrna_strand>GGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201439" ref_strand="+" ref_description="SGN-E201439 [cLEC-4-A19]">
      <seq>aatgtgagtcagaagggattttgggtcatgggtaatgctcaaagcctccagtcttttgtttctttgacaatcaccttatgccagggagccactgatgtcggtcttgaagctgtgggaaagggatgcccaaatctcaaatatatgtgcattcgcaagtgttgctttgtttctgacggtggtcttgttgctttcgctaaagaggctggatctctcgagagtttaatcttggaggagtgcaacagaattacccaagtaggtatccttaatgcagtttcaaactgcaggaagttaaagtctctttccctagtgaagtgcatgggaatcaaggatctagctctacaaacttccatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3840" stop="2888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3540" g_stop="3188" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E201439" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3540" e_stop="3188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCT</genome_strand>
        <mrna_strand>AATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAAGCCTCCAGTCTTTTGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311004" ref_strand="+" ref_description="SGN-E311004 [cLEZ-17-K23]">
      <seq>gagttgctagtcttctgtcatcaggtgcttcaatgttaacaaaagtgaaactacatggtctaaacattaccgatttctcgcttgctgtcattggtcactacggcaagctgattaccagtcttaatctttgttcacttcgtaatgtgagtcagaagggattttgggtcatgggtaatgctcaaggcctccagtctttggtttctttgacaatcaccttatgccagggagccactgatgtcggtcttgaagctgtgggaaagggatgcccaaatctcaaatatatgtgcattcgcaagtgttgctttgtttctgacggtggtcttgttgctttcgctaaagaggctggatctctcgagagtttaatcttggaggagtgcaacagaattacccaagtaggtatccttaatgcagtttcaaactgcaggaagttaaagtctctttccctactgaagtgcatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3980" stop="2920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3680" g_stop="3220" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E311004" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3680" e_stop="3220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGA</genome_strand>
        <mrna_strand>GAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTACTGAAGTGCATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410408" ref_strand="+" ref_description="SGN-E410408 [PPI-16-P2]">
      <seq>gaaggtctcttggaggttgcaagggaatgccgttcattagaaaagctagatctgagccactgtcgttcaatctccaacaagggtcttgttgcaatagcagagaattgcccgagcttgacttcattgactattgaatcctgtccaaagattggaaacgaaggcttgcaagctattggaagatgctgcaccaaactacagtctcttacgattaaggactgcccacttgttggagatcagggagttgctagtcttctgtcatcaggtgcttcaatgttgtcaaaagtgaaactacatggtctaaacatcacagatttctcgcttgctgtcattggtcactatggcaagctgattaccaatcttaatctttgttcacttcgtaatgtgagtcagaagggattttgggtcatgggtaatgctcaaggcctccagtctctggtttctttgacaatcaccttatgccagggagccactgatgtcggtcttgaagctgttggaaagggatgcccaaatctcaaacatatgtgcattcgcaagtgttgctttgtttctgacggtgggcttgttgctttcgctaaagaggctggatctcttgagagtttgatctttggaggagtgcaacagaattacccaagtaggtatcctttaatgcagtttcaaactgcaggaaagtaaagtctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="4218" stop="2941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3918" g_stop="3241" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E410408" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3918" e_stop="3241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATC-TTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCC-TTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTT</genome_strand>
        <mrna_strand>GAAGGTCTCTTGGAGGTTGCAAGGGAATGCCGTTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCGAGCTTGACTTCATTGACTATTGAATCCTGTCCAAAGATTGGAAACGAAGGCTTGCAAGCTATTGGAAGATGCTGCACCAAACTACAGTCTCTTACGATTAAGGACTGCCCACTTGTTGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTGTCAAAAGTGAAACTACATGGTCTAAACATCACAGATTTCTCGCTTGCTGTCATTGGTCACTATGGCAAGCTGATTACCAATCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTCTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTTGGAAAGGGATGCCCAAATCTCAAACATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGGCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTTGAGAGTTTGATCTTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTTAATGCAGTTTCAAACTGCAGGAAAGTAAAGTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213032" ref_strand="+" ref_description="SGN-E213032 [cLEC-72-D9]">
      <seq>ttcaatgttaacaaaagtgaaactacatggtctaaacattaccgatttctcgcttgctgtcattggtcactacggcaagctgattaccagtcttaatctttgttcacttcgtaatgtgagtcacaagggattttgggtcatgggtaatgctcaaggcctccagtctttggtttctttgacaatcaccttatgccagggagccactgatgtcggtcttgaagctgtgggaaagggatgcccaaatctcgaatatatgtgcattcgcaagtgttgctttgtttctgacggaggtcttgttgctttcgctaaagaggctggatctctccagagtttaatcttggaggagtgcgacagaattacccaaggaggtatccttaatgcagtttcccactgcatgaaggtaaagtctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="3952" stop="2941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3652" g_stop="3241" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E213032" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3652" e_stop="3241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTT</genome_strand>
        <mrna_strand>TTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCACAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCGAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGAGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCCAGAGTTTAATCTTGGAGGAGTGCGACAGAATTACCCAAGGAGGTATCCTTAATGCAGTTTCCCACTGCATGAAGGTAAAGTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365756" ref_strand="+" ref_description="SGN-E365756 [cLPT-8-J20]">
      <seq>tacaattaaggactgcccgcttgtcggagatcagggagttgctagtcttctgtcatcaggtgcttcaatgttaacaaaagtgaaactacatggtctaaacattaccgatttctcgcttgctgtcattggtcactacggcaagctgattaccagtcttaatctttgttcacttcgtaatgtgagtcagaagggattttgggtcatgggtaatgctcaaggcctccagtctttggtttctttgacaatcaccttatgccagggagccactgatgtcggtcttgaagccgtgggaaagggatgcccaaatctcaaacatatgtgcattcgcaagtgttgctttgtttctgacggtggtcttgttgctttcgctaaagaggctggatctctcgatagtttaatcttggaggagtgcaacagaattaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="4015" stop="2991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3715" g_stop="3291" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E365756" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3715" e_stop="3291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCC</genome_strand>
        <mrna_strand>TACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCCGTGGGAAAGGGATGCCCAAATCTCAAACATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGATAGTTTAATCTTGGAGGAGTGCAACAGAATTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250498" ref_strand="+" ref_description="SGN-E250498 [cLEG-18-E23]">
      <seq>ttctatcggagatgaaggtctcttggaggttgcaagagaatgccattcattagaaaagctagatctgagccactgtcgttcaatctccaacaagggtcttgttgcaatagcagagaattgccctagcttgacttcattgactattgaatcctgtccaaatattggaaacgaaggcttgcaagctgttggaaaatactgcaccaaactacagtctcttacaattaaggactgcccgcttgtcggagatcagggagttgctagtcttctgtcatcaggtgcttcaatgttaacaaaagtgaaactacatggtctaaacattaccgatttctcgcttgctgtcattggtcactacggcaagctgattaccagtcttaatctttgttcacttcgtaatgtgagtcagaagggattttgggtcatgggtaatgctcaaggcctccagtctttggtttctttgacaatcaccttatgccagggagccactgatgtcggtcttgaagctgtgggaaagggatgcccaaatctcaaatatatgtgcattcgcaagtgttgctttgtttctgacggtggtcttgttgctttcgctaaagaggctggatctctcgagagtttaatcttggaggagtgcaacagaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="4231" stop="2994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3931" g_stop="3294" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E250498" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3931" e_stop="3294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTA</genome_strand>
        <mrna_strand>TTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365857" ref_strand="+" ref_description="SGN-E365857 [cLPT-8-J16]">
      <seq>tacaattaaggactttccgcttgtcggagatcagggagttgctagccttctgtcatcaggtgcttcaatgctaacaaaagtgaaactacatgggctaaacattaccgatttctcgcttgctgtcattggtcactacggcaagctgattaccagtcttaatctttgttcacttcgtaatgtgagtcagaagggattttgggtcatgggtaatgctcaaggcctccagtctttggtttctttgacaatcaccttatgccagggagccactgatgtcggtcttgaagccgtgggaaagggatgcccaaatctcaaacatatgtgcattcgcaagtgttgctttgtttctgacagaggtcttgttgctttcgctaaagaggctggatctctcgataggttaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="4015" stop="3015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3715" g_stop="3315" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E365857" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3715" e_stop="3315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCT</genome_strand>
        <mrna_strand>TACAATTAAGGACTTTCCGCTTGTCGGAGATCAGGGAGTTGCTAGCCTTCTGTCATCAGGTGCTTCAATGCTAACAAAAGTGAAACTACATGGGCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCCGTGGGAAAGGGATGCCCAAATCTCAAACATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACAGAGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGATAGGTTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333674" ref_strand="+" ref_description="SGN-E333674 [cTOD-22-N16]">
      <seq>aagggaagaaagctactgatattagacttgctgcaattgcagttgggacgtctacccgtggtggactaggaaagctttctattcgagggagtaactcagttcgtggtattactaatgtcggtctatctgctgttgcacatgggtgtccttctcttagggtcctatcattgtggaatgttccttctatcggagatgaaggtctcttggaggttgcaagagaatgccattcattagaaaagctagatctgagccactgtcgttcaatctccaacaagggtcttgttgcaatagcagagaattgccctagcttgacttcattgactattgaatcctgtccaaatattggaaacgaaggcttgcaagctgttggaaaatactgcaccaaactacagtctcttacaattaaggactgcccgcttgtcggagatcagggagttgctagtcttctgtcatcaggtgcttcaatgttaacaaaagtgaaactacatggtctaaacattaccgatttctcgcttgctgtcattggtcactacggcaagctgattaccagtcttaatctttgttcacttcgtaatgtgagtcagaagggattttgggtcatgggtaatgctcaaggcctccagtctttggtttctttgancatcaccttatgccanggagccactgatgtcngtcttgaagctgtgggaaagggatgcccaaatctcaatatatgtgcattcgcaagtgttgctttgtttctgacggtggtcttgttgctttcgctaagaagctggatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="4412" stop="3029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4112" g_stop="3329" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E333674" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4112" e_stop="3329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCT</genome_strand>
        <mrna_strand>AAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGANCATCACCTTATGCCANGGAGCCACTGATGTCNGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTC-AATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCT-AAGAAGCTGGATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703328" ref_strand="+" ref_description="SGN-E703328 [FA21AG10]">
      <seq>gttgaatgtgatggataccttaccaggtgtgtggaagggaagaaagctactgatattagacttgctgcaattgcagttgggacgtctacccgtggtggactaggaaagctttctattcgagggagtaactcagttcgtggtattactaatgtcggtctatctgctgttgcacatgggtgtccttctcttagggtcctatcattgtggaatgttccttctatcggagatgaaggtctcttggaggttgcaagagaatgccattcattagaaaagctagatctgagccactgtcgttcaatctccaacaagggtcttgttgcaatagcagagaattgccctagcttgacttcattgactattgaatcctgtccaaatattggaaacgaaggcttgcaagctgttggaaaatactgcaccaaactacagtctcttacaattaaggactgcccgcttgtcggagatcagggagttgctagtcttctgtcatcaggtgcttcaatgttaacaaaagtgaaactacatggtctaaacattaccgatttctcgcttgctgtcattggtcactacggcaagctgattaccagtcttaatctttgttcacttcgtaatgtgagtcagaagggattttgggtcatgggtaatgctcaaggcctccagtctttggtttctttgaccatcaccttatgccagggagccactgatgtcggtcttgaagctgtgggaaagggatgcccaaatctcaaatatatgtgcattcgcaagtgttgctttgtttctgacggtggtcttgttgctttccctaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="4446" stop="3039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4146" g_stop="3339" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E703328" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4146" e_stop="3339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGG</genome_strand>
        <mrna_strand>GTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACCATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCCCTAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345072" ref_strand="+" ref_description="SGN-E345072 [cTOF-22-E10]">
      <seq>tgaagttgaatgtgatggataccttaccaggtgtgtggaagggaagaaagctactgatattagacttgctgcaattgcagttgggacgtctacccgtggtggactaggaaagctttctattcgagggagtaactcagttcgtggtattactaatgtcggtctatctgctgttgcacatgggtgtccttctcttagggtcctatcattgtggaatgttccttctatcggagatgaaggtctcttggaggttgcaagagaatgccattcattagaaaagctagatctgagccactgtcgttcaatctccaacaagggtcttgttgcaatagcagagaattgccctagcttgacttcattgactattgaatcctgtccaaatattggaaacgaaggcttgcaagctgttggaaaatactgcaccaaactacagtctcttacaattaaggactgcccgcttgtcggagatcagggagttgctagtcttctgtcatcaggtgcttcaatgttaacaaaagtgaaactacatggtctaaacattaccgatttctcgcttgctgtcattggtcactacggcaagctgattaccagtcttaatctttgttcacttcgtaatgtgagtcagaagggattttgggtcatgggtaatgctcaaggcctncagtctttggtttctttgacaatcaccttatgccanggagccanctgatgtcggtcttgaagctgtgggaaagggatgcccaaatctcaatatatgtgcattcgcaagtgttgctttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="4450" stop="3073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4150" g_stop="3373" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="778" r_length="778" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E345072" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4150" e_stop="3373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCA-CTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTT</genome_strand>
        <mrna_strand>TGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTNCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCANGGAGCCANCTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTC-AATATATGTGCATTCGCAAGTGTTGCTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279883" ref_strand="+" ref_description="SGN-E279883 [cLER-8-G23]">
      <seq>tagatctgagccactgtcgttcaatctccaacaagggtcttgttgcaatagcagagaattgccctagcttgacttcattgactattgaatcctgtccaaatattggaaacgaaggcttgcaagctgttggaaaatactgcaccaaactacagtctcttacaattaaggactgcccgcttgtcggagatcagggagttgctagtcttctgtcatcaggtgcttcaatgttaacaaaagtgaaactacatggtctaaacattaccgatttctcgcttgctgtcattggtcactacggcaagctgattaccagtcttaatctttgttcacttcgtaatgtgagtcagaagggattttgggtcatgggtaatgctcaaggcctccagtctttggtttctttgacaatcaccttatgccagggagccactgatgtcggtcttgaagctgtgggaaagggatgcccaaatctcaaatatatgtgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="4172" stop="3091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3872" g_stop="3391" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E279883" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3872" e_stop="3391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATT</genome_strand>
        <mrna_strand>TAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452100" ref_strand="+" ref_description="SGN-E452100 [cSTS-15-L13]">
      <seq>ctgaaatctgcaggagcaagagctataacaatctaaatgacgcaataatgatctctaaagatgaagatcttgaagttgaatgtgatggataccttactaggtgtgtggaagggaagaaagctactgatgttagacttgctgcaattgcagttgggacgtctacccgtggtggactaggaaagctttctatccgagggagtaactcagttcgtggtattactaatgtcggtctatctgctattgcacatgggtgcccttctcttagggtcctatcattgtggaatgttccttctattggggatgaaggtctcttggaggttgcaagggaatgccgttcattagaaaagctagatctgagccactgtcgttcaatctccaacaagggtcttgttgcaatagcagagaattgcccgagcttgacttcattgactattgaatcctgtccaaagattggaaacgaaggcttgcaagctattggaagatgctgcaccaaactacagtctcttacgattaaggactgcccacttgttggagatcagggagttgctagtcttctgtcatcaggtgcttcaatgttgtcaaaagtgaaactacatggtctaaacatcacagatttctcgcttgctgtcattggtcactatggcaagctgattaccaatcttaatctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="4520" stop="3251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4220" g_stop="3551" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E452100" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4220" e_stop="3551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTG</genome_strand>
        <mrna_strand>CTGAAATCTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCAATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACTAGGTGTGTGGAAGGGAAGAAAGCTACTGATGTTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATCCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTATTGCACATGGGTGCCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATTGGGGATGAAGGTCTCTTGGAGGTTGCAAGGGAATGCCGTTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCGAGCTTGACTTCATTGACTATTGAATCCTGTCCAAAGATTGGAAACGAAGGCTTGCAAGCTATTGGAAGATGCTGCACCAAACTACAGTCTCTTACGATTAAGGACTGCCCACTTGTTGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTGTCAAAAGTGAAACTACATGGTCTAAACATCACAGATTTCTCGCTTGCTGTCATTGGTCACTATGGCAAGCTGATTACCAATCTTAATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212502" ref_strand="+" ref_description="SGN-E212502 [cLEC-74-M21]">
      <seq>tgatctctaaagatgaagatcttgaagttgaatgtgatggataccttaccaggtgtgtggaagggaagaaagctactgatattagacttgctgcaattgcagttgggacgtctacccgtggtggactaggaaagctttctattcgagggagtaactcagttcgtggtattactaatgtcggtctatctgctgttgcacatgggtgtccttctcttagggtcctatcattgtggaatgttccttctatcggagatgaaggtctcttggaggttgcaagagaatgccattcattagaaaagctagatctgagccactgtcgttcaatctccaacaagggtcttgttgcaatagcagagaattgccctagcttgacttcattgactattgaatcctgtccaaatattggaaacgaaggcttgcaagctgttggaaaatactgcaccaaactacagtctcttacaattaaggactgcccgcttgtcggagatcagggagttgctagtcttctgtcatcaggtgcttcaatgttaacaaaagtgaaactacatggtctaaacattaccgatttctcgcttgctgtcattggtcactacggcaagctgattaccagtcttaatctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="4472" stop="3251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4172" g_stop="3551" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E212502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4172" e_stop="3551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTG</genome_strand>
        <mrna_strand>TGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366483" ref_strand="+" ref_description="SGN-E366483 [cLPT-13-A14]">
      <seq>tgtgttagacttgctgcaattgcagttgggacgtctacccgtggtggactaggaaagctttctattcgagggagtaactcagttcgtggtattactaatgtcggtctatctgctattgcacatgggtgcccttctcttaaggtcctatcattgtggaatgttccttctatcggagatgaaagtctcttggaggttgcaagggaatgccattcattagaaaagctagatctgagccactgtcgttcaatctccaacaagggtcttgttgcaatagcagagaattgccctagcttgacttcattgactattgaatcctgtccaaagattggaaacgaaggcttgcaagctattggaagatgctgcaccaaactacagtctcttacaattaaggactgcccgcttgtcggagatcacggagttgctagtcttctgtcatcacgtgcttcaatgttaacaaaagtgaaactacatggtctaaacattaccgatttctcgcttgctgtcattggtcactacggcaagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="4396" stop="3270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4096" g_stop="3570" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E366483" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4096" e_stop="3570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGA</genome_strand>
        <mrna_strand>TG-TGTTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTATTGCACATGGGTGCCCTTCTCTTAAGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAAGTCTCTTGGAGGTTGCAAGGGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAAGATTGGAAACGAAGGCTTGCAAGCTATTGGAAGATGCTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCACGGAGTTGCTAGTCTTCTGTCATCACGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340631" ref_strand="+" ref_description="SGN-E340631 [cTOF-1-K2]">
      <seq>cagcagcttgtgtttctaagcgctggcttacagtgttgagtagcgtgaaaaactctgaaatttgcaggagcaagagctataacaatctaaatgacgctataatgatctctaaagatgaagatcttgaagttgaatgtgatggataccttaccaggtgtgtggaagggaagaaagctactgatattagacttgctgcaattgcagttgggacgtctacccgtggtggactaggaaagctttctattcgagggagtaactcagttcgtggtattactaatgtcggtctatctgctgttgcacatgggtgtccttctcttagggtcctatcattgtggaatgttccttctatcggagatgaaggtctcttggaggttgcaagagaatgccattcattagaaaagctagatctgagccactgtcgttcaatctccaacaagggtcttgttgcaatagcagagaattgccctagcttgacttcattgactattgaatcctgtccaaatattggaaacgaaggcttgcaagctgttggaaaatactgcaccaaactacagtctcttacaattaaggactgcccgcttgtcggagataagggagttgctagtcttctgtcatcaggtgcttcaatgttaacaaaagtgaaactacatggtctaaacattaccgatttctcgcttgctgtcattggtcactacggcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="4574" stop="3273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4274" g_stop="3573" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E340631" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4274" e_stop="3573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGC</genome_strand>
        <mrna_strand>CAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATAAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477648" ref_strand="+" ref_description="SGN-E477648 [cSTD-1-E2]">
      <seq>ccggtcaaaggatccatctcttgaaattcttcctgatgaatgcctatttgagatcctcagacgattgcccggtggccgagaaaggggtgcagcagcttgtgtttctaagcgctggcttacagtgttgagtagcgtgaggaactctgaaatctgcaggagcaagagctataacaatctaaatgacgcaataatgatctctaaagatgaagatcttgaagttgaatgtgatggataccttactaggtgtgtggaagggaagaaagctactgatgttagacttgctgcaattgcagttgggacgtctacccgtggtggactaggaaagctttctatccgagggagtaactcagttcgtggtattactaatgttggtctatctgctattgcacatgggtgcccttctcttagggtcctatcattgtggaatgttccttctattggggatgaaggtctcttggaggttgcaagggaatgccgttcattagaaaagctagatctgagccactgtcgttcaatctccacaagggtcttgttgcaatagcagagaattgcccgagcttgacttcattgaccattgaatcctgtccaaagattggaaacgaaggcttgcaagctattggaagatgctgcaccaaactacagtcccttacgattaaggactgcccacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="4663" stop="3393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4363" g_stop="3693" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E477648" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4363" e_stop="3693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTG</genome_strand>
        <mrna_strand>CCGGTCAAAGGATCCATCTCTTGAAATTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCCGGTGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAGGAACTCTGAAATCTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCAATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACTAGGTGTGTGGAAGGGAAGAAAGCTACTGATGTTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATCCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTTGGTCTATCTGCTATTGCACATGGGTGCCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATTGGGGATGAAGGTCTCTTGGAGGTTGCAAGGGAATGCCGTTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCC-ACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCGAGCTTGACTTCATTGACCATTGAATCCTGTCCAAAGATTGGAAACGAAGGCTTGCAAGCTATTGGAAGATGCTGCACCAAACTACAGTCCCTTACGATTAAGGACTGCCCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437912" ref_strand="+" ref_description="SGN-E437912 [cSTA-5-B7]">
      <seq>gacgattgcccggaggccgagaaaggggtgcagcagcttgtgtttctaagcgctggcttacgttgctgagtagcgtgaggaactctgaaatttgcaggagcaagagctataacaatctaaatgatgcaataatgatctctaaagatgaagatcttgaagttgaatgtgatggataccttaccaggtgtgtggaagggaagaaagctactgatgttagacttgctgcaattgcagttgggacgtctacccgtggtggactaggaaagctttctatccgagggagtaactcagttcgtggaattactaatgtcggtctatctgctattgcacatgggtgcccttctcttagggtcttatcattgtggaatgttccttctattggggatgaaggtctcttggaggttgcaagggaatgccgttcattagaaaagctagatctgagccactgtcgttcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="4604" stop="3546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4304" g_stop="3846" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E437912" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4304" e_stop="3846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCT</genome_strand>
        <mrna_strand>GACGATTGCCCGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACGTTGCTGAGTAGCGTGAGGAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGATGCAATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATGTTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATCCGAGGGAGTAACTCAGTTCGTGGAATTACTAATGTCGGTCTATCTGCTATTGCACATGGGTGCCCTTCTCTTAGGGTCTTATCATTGTGGAATGTTCCTTCTATTGGGGATGAAGGTCTCTTGGAGGTTGCAAGGGAATGCCGTTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454096" ref_strand="+" ref_description="SGN-E454096 [cSTS-22-K5]">
      <seq>gaagaacagacatgcctactcttgttaattacagtggtgatgatgagttctattctggcggatcgttttgttctgcagatttgggtctcatgttgtcgttgggtcatgctgatgtttactgtcctcctaggaagagggcacgcattagtggcccgtttgttgtcgaagaccggtcaaaggatccatctcttgaaattcttcctgatgaatgcctatttgagatcctcagacgattgcccggtggccgagaaaggggtgcagcagcttgtgtttctaagcgctggcttacagtgttgagtagcgtgaggaactctgaaatctgcaggagcaagagctataacaatctaaatgacacaataatgatctctaaagatgaagatcttgaagttgaatgtgatggataccttactaggtgtgtggaagggaagaaagctactgatgttagacttgctgcaattgcagttgggacgtctacccgtggtggactaggaaagctttctatccgagggagtaactcagttcgtggtattactaatgttggtctatctgctattgcacatgggtgcccttctcttagggtcctatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="5691" stop="3644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5391" g_stop="5356" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5355" i_stop="4497" i_length="859">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.932" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4496" g_stop="3944" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="589" r_length="553" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E454096" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5391" e_stop="5356"/>
          <exon e_start="4496" e_stop="3944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACAATCATGCCTACTCTTGTTAATTACAGTGGTGAGTTTCAAAAAAACTTCATTTCTTTGTTATTTTAAGTTATGGGGTTGTTCATATTTCAATGAATTTTGAAGTTTCAGTTACAGTTTTTTGTTTTTTTCATCATGAATTACTGAGATAGAGATTGATTTGTTATGTTTTAGATTCATGTAATTTGTTAATCATGAATAAAGTTTATAAATTTATATAGTTACATGATTGTTGAGACTGAGAAGAAGATGAATTCTATTAAGGTTTAGATCCATGAATATAGTTTATAACTATGTCTAGGTGCATGATTGTTGATAACTTGAGATGAATATGGTTTATTAATTTACTGAAATGAAGATGATCTTTTAGGTTTAGATCCAATCATGTTCCTTTTTTTAAAAGGAAGTTGGTTATGAGATAATAACTAAGTTGAGTGACTATCTAAGAAATTAACTCATATAAACTTTGTATAGATGCATGATTGTTGAGGTGAATATGAACATTAATTTACTGAAATGGATAAAAAAAGGGAAAAAAGTTGTGATGAGGCTATATATTTGGCTTTGAAGATTAATTTCTGTGTTAGATAGATCTTCTTTTGTCTTATGTTCTGAATCTATGTTAAAGATTGGTAATATATTGAAGAAACTGTGGATTACTCTTTTGGGTTCTCTATCTAGAATGATCCATCTGATCTGATCTGAAGATGTATCTACATAATAGGTAGATCTAAAGGTTTAATTTACATGTGATGGTTGTTTATCTGTTGTGAAGTTGAAGTGAAAATTCATAAGAAATGGGCATATGGACTAGACAAAATTTAGTATGCTATAGCTTGTTGATTTAAGGGAAAATATAGCTGACAGTGTATGTTCTCCTTGGATTTCAGGTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATT</genome_strand>
        <mrna_strand>GAAGAACAGACATGCCTACTCTTGTTAATTACAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATGAGTTCTATTCTGGCGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCGTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCACGCATTAGTGGCCCGTTTGTTGTCGAAGACCGGTCAAAGGATCCATCTCTTGAAATTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCCGGTGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAGGAACTCTGAAATCTGCAGGAGCAAGAGCTATAACAATCTAAATGACACAATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACTAGGTGTGTGGAAGGGAAGAAAGCTACTGATGTTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATCCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTTGGTCTATCTGCTATTGCACATGGGTGCCCTTCTCTTAGGGTCCTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586064" ref_strand="+" ref_description="SGN-E586064 [73489]">
      <seq>ctaacctcaaatctttctctctctatttttgccctactttgttggggttcttgaaaaatctggatttttgagggcttcttgaaaaaattggattttttcatctggaatgcaaatcttggttaaagatataatctgggttgtgtttttcttggttcaaaatctgatcttttttgctttacagtttgggatttcttctgaagaacagacatgcctactcttgttaattacagtggtgatgatgagttctattctggcggatcgttttgttctgcagatttgggtctcatgttgtctttgggtcatgctgatgtttactgtcctcctaggaagagggcacgcattagtggcccgtttgttgtcgaagaccggtcaaaggatccatctcttgaaattcttcctgatgaatgcctgtttgagatcctcagacgattgcccggtggccgagaaaggggtgcagcagcttgtgtttctaagcgctggcttacagtgttgagtagcgtgaggaactctgaaatctgcaggagcaagagctataacaatctaaaatgacgcaataatgatctctaaagatgaagatcttgaagttgaatgtgatggataccttactaggtgtgtggaagggaagaaagctactgatgttaggacttgctgcaattgcagttggggacgtcttaccgtggtggactagganagctttctatccgagggagtaactcagttcgtggtattactaatgtcgggtctatctgctattgcacatgggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="5873" stop="3668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5587" g_stop="5356" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5355" i_stop="4497" i_length="859">
            <donor d_prob="0.979" d_score="0.68"/>
            <acceptor a_prob="0.932" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4496" g_stop="3971" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="762" r_length="530" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E586064" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5587" e_stop="5356"/>
          <exon e_start="4496" e_stop="3971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACCTCAATCTTTCTTTCTCTCTCTATTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGG-TTCTTGAAAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGA-----T-TGAAGAACAATCATGCCTACTCTTGTTAATTACAGTGGTGAGTTTCAAAAAAACTTCATTTCTTTGTTATTTTAAGTTATGGGGTTGTTCATATTTCAATGAATTTTGAAGTTTCAGTTACAGTTTTTTGTTTTTTTCATCATGAATTACTGAGATAGAGATTGATTTGTTATGTTTTAGATTCATGTAATTTGTTAATCATGAATAAAGTTTATAAATTTATATAGTTACATGATTGTTGAGACTGAGAAGAAGATGAATTCTATTAAGGTTTAGATCCATGAATATAGTTTATAACTATGTCTAGGTGCATGATTGTTGATAACTTGAGATGAATATGGTTTATTAATTTACTGAAATGAAGATGATCTTTTAGGTTTAGATCCAATCATGTTCCTTTTTTTAAAAGGAAGTTGGTTATGAGATAATAACTAAGTTGAGTGACTATCTAAGAAATTAACTCATATAAACTTTGTATAGATGCATGATTGTTGAGGTGAATATGAACATTAATTTACTGAAATGGATAAAAAAAGGGAAAAAAGTTGTGATGAGGCTATATATTTGGCTTTGAAGATTAATTTCTGTGTTAGATAGATCTTCTTTTGTCTTATGTTCTGAATCTATGTTAAAGATTGGTAATATATTGAAGAAACTGTGGATTACTCTTTTGGGTTCTCTATCTAGAATGATCCATCTGATCTGATCTGAAGATGTATCTACATAATAGGTAGATCTAAAGGTTTAATTTACATGTGATGGTTGTTTATCTGTTGTGAAGTTGAAGTGAAAATTCATAAGAAATGGGCATATGGACTAGACAAAATTTAGTATGCTATAGCTTGTTGATTTAAGGGAAAATATAGCTGACAGTGTATGTTCTCCTTGGATTTCAGGTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCT-AAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTA-GACTTGCTGCAATTGCAGTT-GGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTC-GGTCTATCTGCTGTTGCACATGG</genome_strand>
        <mrna_strand>CTAACCTCAA--AT-CTTTCTCTCTCTA-TTTTTGCCCTACTTTGTTGGGGTTCTTGAAAAATCTGGATTTTTGAGGGCTTCTTG---AAAAAATTGGATTTTTTCATCTGGAATGCAAATCTTGGTTAAAGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTTCTTCTGAAGAACAGACATGCCTACTCTTGTTAATTACAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATGAGTTCTATTCTGGCGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCACGCATTAGTGGCCCGTTTGTTGTCGAAGACCGGTCAAAGGATCCATCTCTTGAAATTCTTCCTGATGAATGCCTGTTTGAGATCCTCAGACGATTGCCCGGTGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAGGAACTCTGAAATCTGCAGGAGCAAGAGCTATAACAATCTAAAATGACGCAATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACTAGGTGTGTGGAAGGGAAGAAAGCTACTGATGTTAGGACTTGCTGCAATTGCAGTTGGGGACGTCTTACCGTGGTGGACTAGGANAGCTTTCTATCCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGGTCTATCTGCTATTGCACATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365328" ref_strand="+" ref_description="SGN-E365328 [cLPT-2-D15]">
      <seq>ttttgttctgcagatttgggtctcatgttgtctttgggtcatgctgatgtttactgtcctcctaggaagagggcaagaattagtggcccgtttgttgtcgaagaccgatcaaaggatccatctcttgaggttcttcctgatgaatgcctatttgagatcctcagacgattgcctggaggccgagaaaggggtgcagcagcttgtgtttctaagcgctggcttacagtgttgagtagcgtgaagaactctgaaatttgcaggagcaagagctataacaatctaaatgacgctataatgatctctaaagatgaagatcttgaagttgaatgtgatggataccttaccaggtgtgtggaagggaagaaagctactgatgttagacttgctgcaattgcagttgggacgtctacccgtggtggactaggaaagctttctattcgagggagtaactcagttcgtggtattactaatgtcggtctatctgctattgcacatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="4767" stop="3671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4467" g_stop="3971" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E365328" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4467" e_stop="3971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGG</genome_strand>
        <mrna_strand>TTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCAAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAGAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATGTTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTATTGCACATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364867" ref_strand="+" ref_description="SGN-E364867 [cLPT-4-H5]">
      <seq>ttctctctctaacctcaatctttcttctctctctatttttttgccctactctgttggggttgttaaaaaatctgtatttttgagggttcttgaaaaaaaattggatttttttcatctggaatgcaaatcttggttaaagatataatctgggttgtgtttttcttggttcaaaatctgatcttttttgctttacagtttgggattgaagaacaatcatgcctactcttgttaattacagtggtgatgatgagttctactctggtggatcgttttgttctgcagatttgggtctcatgttgtctttgggtcatgctgatgtttactgtcctcctaggaagagggcaagaattagtggcccgtttgttgtcgaagaccgatcaaaggatccatctcttgaggttcttcctgatgaatgcctatttgagatcctcagacgattgcctggaggccgagaaaggggtgcagcagcttgtgtttctaagcgctggcttacagtgttgagtagcgtgaagaactctgaaatttgcaggagcaagagctataacaatctaaatgacgctataatgatctctaaagatgaagatcttgaagttgaatgtgatggatacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="5895" stop="3826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5595" g_stop="5356" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5355" i_stop="4497" i_length="859">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4496" g_stop="4126" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="611" r_length="371" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E364867" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5595" e_stop="5356"/>
          <exon e_start="4496" e_stop="4126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTTTAACCTCAATCTTTCTTTCTCTCTCTATTTTTT-GCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTGAAAAAAAAATTGGA-TTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTGGTGAGTTTCAAAAAAACTTCATTTCTTTGTTATTTTAAGTTATGGGGTTGTTCATATTTCAATGAATTTTGAAGTTTCAGTTACAGTTTTTTGTTTTTTTCATCATGAATTACTGAGATAGAGATTGATTTGTTATGTTTTAGATTCATGTAATTTGTTAATCATGAATAAAGTTTATAAATTTATATAGTTACATGATTGTTGAGACTGAGAAGAAGATGAATTCTATTAAGGTTTAGATCCATGAATATAGTTTATAACTATGTCTAGGTGCATGATTGTTGATAACTTGAGATGAATATGGTTTATTAATTTACTGAAATGAAGATGATCTTTTAGGTTTAGATCCAATCATGTTCCTTTTTTTAAAAGGAAGTTGGTTATGAGATAATAACTAAGTTGAGTGACTATCTAAGAAATTAACTCATATAAACTTTGTATAGATGCATGATTGTTGAGGTGAATATGAACATTAATTTACTGAAATGGATAAAAAAAGGGAAAAAAGTTGTGATGAGGCTATATATTTGGCTTTGAAGATTAATTTCTGTGTTAGATAGATCTTCTTTTGTCTTATGTTCTGAATCTATGTTAAAGATTGGTAATATATTGAAGAAACTGTGGATTACTCTTTTGGGTTCTCTATCTAGAATGATCCATCTGATCTGATCTGAAGATGTATCTACATAATAGGTAGATCTAAAGGTTTAATTTACATGTGATGGTTGTTTATCTGTTGTGAAGTTGAAGTGAAAATTCATAAGAAATGGGCATATGGACTAGACAAAATTTAGTATGCTATAGCTTGTTGATTTAAGGGAAAATATAGCTGACAGTGTATGTTCTCCTTGGATTTCAGGTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTT</genome_strand>
        <mrna_strand>TTCTCTCTCTAACCTCAATCTTTC-TTCTCTCTCTATTTTTTTGCCCTACTCTGTTGGGGTTGTTAAAAAATCTGTATTTTTGAGGGTTCTTG-AAAAAAAATTGGATTTTTTTCATCTGGAATGCAAATCTTGGTTAAAGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCAAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAGAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329207" ref_strand="+" ref_description="SGN-E329207 [cTOD-2-A9]">
      <seq>tttaacctcaatctttctttctctctctattttttgccctactctgttggggttctttaaaaatctgtatttttgagggttcttgaaaaaaaattggattttttcatctggaatgcgaatcttggttaaggatataatctgggttgtgtttttcttggttcaaaatctgatcttttttgctttacagtttgggattgaagaacaatcatgcctactcttgttaattacagtggtgatgatgagttctactctggtggatcgttttgttctgcagatttgggtctcatgttgtctttgggtcatgctgatgtttactgtcctcctaggaagagggctagaattagtggcccgtttgttgtcgaagaccgatcaaaggatccatctcttgaggttcttcctgatgaatgcctatttgagatcctcagacgattgcctggaggccgagaaaggggtgcagcagcttgtgtttctaagcgctggcttacagtgttgagtagcgtgaaaaactctgaaatttgcaggagcaagagctataacaatctaaatgacgctataatgatctctaaagatgaagatcttgaaattgaatgtgatggatacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="5888" stop="3826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5588" g_stop="5356" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5355" i_stop="4497" i_length="859">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4496" g_stop="4126" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="603" r_length="371" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E329207" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5588" e_stop="5356"/>
          <exon e_start="4496" e_stop="4126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACCTCAATCTTTCTTTCTCTCTCTATTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTGAAAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTGGTGAGTTTCAAAAAAACTTCATTTCTTTGTTATTTTAAGTTATGGGGTTGTTCATATTTCAATGAATTTTGAAGTTTCAGTTACAGTTTTTTGTTTTTTTCATCATGAATTACTGAGATAGAGATTGATTTGTTATGTTTTAGATTCATGTAATTTGTTAATCATGAATAAAGTTTATAAATTTATATAGTTACATGATTGTTGAGACTGAGAAGAAGATGAATTCTATTAAGGTTTAGATCCATGAATATAGTTTATAACTATGTCTAGGTGCATGATTGTTGATAACTTGAGATGAATATGGTTTATTAATTTACTGAAATGAAGATGATCTTTTAGGTTTAGATCCAATCATGTTCCTTTTTTTAAAAGGAAGTTGGTTATGAGATAATAACTAAGTTGAGTGACTATCTAAGAAATTAACTCATATAAACTTTGTATAGATGCATGATTGTTGAGGTGAATATGAACATTAATTTACTGAAATGGATAAAAAAAGGGAAAAAAGTTGTGATGAGGCTATATATTTGGCTTTGAAGATTAATTTCTGTGTTAGATAGATCTTCTTTTGTCTTATGTTCTGAATCTATGTTAAAGATTGGTAATATATTGAAGAAACTGTGGATTACTCTTTTGGGTTCTCTATCTAGAATGATCCATCTGATCTGATCTGAAGATGTATCTACATAATAGGTAGATCTAAAGGTTTAATTTACATGTGATGGTTGTTTATCTGTTGTGAAGTTGAAGTGAAAATTCATAAGAAATGGGCATATGGACTAGACAAAATTTAGTATGCTATAGCTTGTTGATTTAAGGGAAAATATAGCTGACAGTGTATGTTCTCCTTGGATTTCAGGTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTT</genome_strand>
        <mrna_strand>TTTAACCTCAATCTTTCTTTCTCTCTCTATTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTG-AAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAATTGAATGTGATGGATACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331120" ref_strand="+" ref_description="SGN-E331120 [cTOD-6-J1]">
      <seq>ctttctttgttctctctttaacctcaatctttctttctctctctattttttgccctactctgttggggttctttaaaaatctgtatttttgagggttcttgaaaaaaaattggattttttcatctggaatgcgaatcttggttaaggatataatctgggttgtgtttttcttggttcaaaatctgatcttttttgctttacagtttgggattgaagaacaatcatgcctactcttgttaattacagtggtgatgatgagttctactctggtggatcgttttgttctgcagatttgggtctcatgttgtctttgggtcatgctgatgtttactgtcctcctaggaagagggctagaattagtggcccgtttgttgtcgaagaccgatcaaaggatccatctcttgaggttcttcctgatgaatgcctatttgagatcctcagacgattgcctggaggccgagaaaggggtgcagcagcttgtgtttctaagcgctggctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="5904" stop="3945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5604" g_stop="5356" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5355" i_stop="4497" i_length="859">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4496" g_stop="4245" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="500" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E331120" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5604" e_stop="5356"/>
          <exon e_start="4496" e_stop="4245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTTGTTCTCTCTTTAACCTCAATCTTTCTTTCTCTCTCTATTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTGAAAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTGGTGAGTTTCAAAAAAACTTCATTTCTTTGTTATTTTAAGTTATGGGGTTGTTCATATTTCAATGAATTTTGAAGTTTCAGTTACAGTTTTTTGTTTTTTTCATCATGAATTACTGAGATAGAGATTGATTTGTTATGTTTTAGATTCATGTAATTTGTTAATCATGAATAAAGTTTATAAATTTATATAGTTACATGATTGTTGAGACTGAGAAGAAGATGAATTCTATTAAGGTTTAGATCCATGAATATAGTTTATAACTATGTCTAGGTGCATGATTGTTGATAACTTGAGATGAATATGGTTTATTAATTTACTGAAATGAAGATGATCTTTTAGGTTTAGATCCAATCATGTTCCTTTTTTTAAAAGGAAGTTGGTTATGAGATAATAACTAAGTTGAGTGACTATCTAAGAAATTAACTCATATAAACTTTGTATAGATGCATGATTGTTGAGGTGAATATGAACATTAATTTACTGAAATGGATAAAAAAAGGGAAAAAAGTTGTGATGAGGCTATATATTTGGCTTTGAAGATTAATTTCTGTGTTAGATAGATCTTCTTTTGTCTTATGTTCTGAATCTATGTTAAAGATTGGTAATATATTGAAGAAACTGTGGATTACTCTTTTGGGTTCTCTATCTAGAATGATCCATCTGATCTGATCTGAAGATGTATCTACATAATAGGTAGATCTAAAGGTTTAATTTACATGTGATGGTTGTTTATCTGTTGTGAAGTTGAAGTGAAAATTCATAAGAAATGGGCATATGGACTAGACAAAATTTAGTATGCTATAGCTTGTTGATTTAAGGGAAAATATAGCTGACAGTGTATGTTCTCCTTGGATTTCAGGTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTA</genome_strand>
        <mrna_strand>CTTTCTTTGTTCTCTCTTTAACCTCAATCTTTCTTTCTCTCTCTATTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTG-AAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365419" ref_strand="+" ref_description="SGN-E365419 [cLPT-2-A22]">
      <seq>ctttgttctctctctaacctcaatctttcttctctctctatttttttgccctactctgttggggttgttaaaaaatctgtatttttgagggttcttgaaaaaaaattggatttttttcatctggaatgcacatcttggttaaagatataatctgggttgcgtttttcttggttcacaatctgatcttttgtgctttacagtttgggattgaagaacaatcatgcctactcttgttaattacaggggggatgatgagttctactctggtggatcgtattgttctgcaaatttgggtctcatgtggtctatgggtcatgctgatgtttactggcctcctaggaagagggcaagaattagtggcccgtttgatgtccaagaccgatcaaaggatccatctcttgaggttcttcctgatgaatgcctatttgagatcctcacacgattgcctggaggccgagaaaggggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="5900" stop="3975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5600" g_stop="5356" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5355" i_stop="4497" i_length="859">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4496" g_stop="4275" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="467" r_length="222" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E365419" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5600" e_stop="5356"/>
          <exon e_start="4496" e_stop="4275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTCTCTCTTTAACCTCAATCTTTCTTTCTCTCTCTAT-TTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTGAAAAAAAAATTGGA-TTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTGGTGAGTTTCAAAAAAACTTCATTTCTTTGTTATTTTAAGTTATGGGGTTGTTCATATTTCAATGAATTTTGAAGTTTCAGTTACAGTTTTTTGTTTTTTTCATCATGAATTACTGAGATAGAGATTGATTTGTTATGTTTTAGATTCATGTAATTTGTTAATCATGAATAAAGTTTATAAATTTATATAGTTACATGATTGTTGAGACTGAGAAGAAGATGAATTCTATTAAGGTTTAGATCCATGAATATAGTTTATAACTATGTCTAGGTGCATGATTGTTGATAACTTGAGATGAATATGGTTTATTAATTTACTGAAATGAAGATGATCTTTTAGGTTTAGATCCAATCATGTTCCTTTTTTTAAAAGGAAGTTGGTTATGAGATAATAACTAAGTTGAGTGACTATCTAAGAAATTAACTCATATAAACTTTGTATAGATGCATGATTGTTGAGGTGAATATGAACATTAATTTACTGAAATGGATAAAAAAAGGGAAAAAAGTTGTGATGAGGCTATATATTTGGCTTTGAAGATTAATTTCTGTGTTAGATAGATCTTCTTTTGTCTTATGTTCTGAATCTATGTTAAAGATTGGTAATATATTGAAGAAACTGTGGATTACTCTTTTGGGTTCTCTATCTAGAATGATCCATCTGATCTGATCTGAAGATGTATCTACATAATAGGTAGATCTAAAGGTTTAATTTACATGTGATGGTTGTTTATCTGTTGTGAAGTTGAAGTGAAAATTCATAAGAAATGGGCATATGGACTAGACAAAATTTAGTATGCTATAGCTTGTTGATTTAAGGGAAAATATAGCTGACAGTGTATGTTCTCCTTGGATTTCAGGTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTG</genome_strand>
        <mrna_strand>CTTTGTTCTCTCTCTAACCTCAATCTTTC-TTCTCTCTCTATTTTTTTGCCCTACTCTGTTGGGGTTGTTAAAAAATCTGTATTTTTGAGGGTTCTTG-AAAAAAAATTGGATTTTTTTCATCTGGAATGCACATCTTGGTTAAAGATATAATCTGGGTTGCGTTTTTCTTGGTTCACAATCTGATCTTTTGTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGATGAGTTCTACTCTGGTGGATCGTATTGTTCTGCAAATTTGGGTCTCATGTGGTCTATGGGTCATGCTGATGTTTACTGGCCTCCTAGGAAGAGGGCAAGAATTAGTGGCCCGTTTGATGTCCAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCACACGATTGCCTGGAGGCCGAGAAAGGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335164" ref_strand="+" ref_description="SGN-E335164 [cTOE-1-H23]">
      <seq>tttgttctctctttaacctcaatctttctttctctctctattttttgccctactctgttggggttctttaaaaatctgtatttttgagggttcttgaaaaaaaattggattttttcatctggaatgcgaatcttggttaaggatataatctgggttgtgtttttcttggttcaaaatctgatcttttttgctttacagtttgggattgaagaacaatcatgcctactcttgttaattacagtggtgatgatgagttctactctggtggatcgttttgttctgcagatttgggtctcatgttgtctttgggtcatgctgatgtttactgtcctcctaggaagagggctagaattagtggcccgtttgttgtcgaagaccgatcaaaggatccatctcttgaggttcttcctgatgaatgcctatttgagatcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="5899" stop="4006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5599" g_stop="5356" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5355" i_stop="4497" i_length="859">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4496" g_stop="4306" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="434" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E335164" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5599" e_stop="5356"/>
          <exon e_start="4496" e_stop="4306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCTCTCTTTAACCTCAATCTTTCTTTCTCTCTCTATTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTGAAAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTGGTGAGTTTCAAAAAAACTTCATTTCTTTGTTATTTTAAGTTATGGGGTTGTTCATATTTCAATGAATTTTGAAGTTTCAGTTACAGTTTTTTGTTTTTTTCATCATGAATTACTGAGATAGAGATTGATTTGTTATGTTTTAGATTCATGTAATTTGTTAATCATGAATAAAGTTTATAAATTTATATAGTTACATGATTGTTGAGACTGAGAAGAAGATGAATTCTATTAAGGTTTAGATCCATGAATATAGTTTATAACTATGTCTAGGTGCATGATTGTTGATAACTTGAGATGAATATGGTTTATTAATTTACTGAAATGAAGATGATCTTTTAGGTTTAGATCCAATCATGTTCCTTTTTTTAAAAGGAAGTTGGTTATGAGATAATAACTAAGTTGAGTGACTATCTAAGAAATTAACTCATATAAACTTTGTATAGATGCATGATTGTTGAGGTGAATATGAACATTAATTTACTGAAATGGATAAAAAAAGGGAAAAAAGTTGTGATGAGGCTATATATTTGGCTTTGAAGATTAATTTCTGTGTTAGATAGATCTTCTTTTGTCTTATGTTCTGAATCTATGTTAAAGATTGGTAATATATTGAAGAAACTGTGGATTACTCTTTTGGGTTCTCTATCTAGAATGATCCATCTGATCTGATCTGAAGATGTATCTACATAATAGGTAGATCTAAAGGTTTAATTTACATGTGATGGTTGTTTATCTGTTGTGAAGTTGAAGTGAAAATTCATAAGAAATGGGCATATGGACTAGACAAAATTTAGTATGCTATAGCTTGTTGATTTAAGGGAAAATATAGCTGACAGTGTATGTTCTCCTTGGATTTCAGGTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTC</genome_strand>
        <mrna_strand>TTTGTTCTCTCTTTAACCTCAATCTTTCTTTCTCTCTCTATTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTG-AAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358006" ref_strand="+" ref_description="SGN-E358006 [cLHT-32-N7]">
      <seq>tttgttctctctttaacctcaatctttcttctctctctatttttttgccctactctgttggggttctttaaaaatctgtatttttgagggttcttgaaaaaaaattggattttttcatctggaatgcaaatcttggttaaagatataatctgggttgtgtttttcttggttcaaaatctgatcttttttgctttacagtttgggattgaagaacaatcatgcctactcttgttaattacagtggtgatgatgagttctactctggtggatcgttttgttctgcagatttgggtctcatgttgtctttgggtcatgctgatgtttactgtcctcctaggaagagagcaagaattagtggcccgtttgttgtcgaagaccgatcaaaggatccatctcttgaggttcttcctgatgaatgcctatttgagatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="5899" stop="4008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5599" g_stop="5356" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5355" i_stop="4497" i_length="859">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4496" g_stop="4308" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="432" r_length="189" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E358006" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5599" e_stop="5356"/>
          <exon e_start="4496" e_stop="4308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCTCTCTTTAACCTCAATCTTTCTTTCTCTCTCTA-TTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTGAAAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTGGTGAGTTTCAAAAAAACTTCATTTCTTTGTTATTTTAAGTTATGGGGTTGTTCATATTTCAATGAATTTTGAAGTTTCAGTTACAGTTTTTTGTTTTTTTCATCATGAATTACTGAGATAGAGATTGATTTGTTATGTTTTAGATTCATGTAATTTGTTAATCATGAATAAAGTTTATAAATTTATATAGTTACATGATTGTTGAGACTGAGAAGAAGATGAATTCTATTAAGGTTTAGATCCATGAATATAGTTTATAACTATGTCTAGGTGCATGATTGTTGATAACTTGAGATGAATATGGTTTATTAATTTACTGAAATGAAGATGATCTTTTAGGTTTAGATCCAATCATGTTCCTTTTTTTAAAAGGAAGTTGGTTATGAGATAATAACTAAGTTGAGTGACTATCTAAGAAATTAACTCATATAAACTTTGTATAGATGCATGATTGTTGAGGTGAATATGAACATTAATTTACTGAAATGGATAAAAAAAGGGAAAAAAGTTGTGATGAGGCTATATATTTGGCTTTGAAGATTAATTTCTGTGTTAGATAGATCTTCTTTTGTCTTATGTTCTGAATCTATGTTAAAGATTGGTAATATATTGAAGAAACTGTGGATTACTCTTTTGGGTTCTCTATCTAGAATGATCCATCTGATCTGATCTGAAGATGTATCTACATAATAGGTAGATCTAAAGGTTTAATTTACATGTGATGGTTGTTTATCTGTTGTGAAGTTGAAGTGAAAATTCATAAGAAATGGGCATATGGACTAGACAAAATTTAGTATGCTATAGCTTGTTGATTTAAGGGAAAATATAGCTGACAGTGTATGTTCTCCTTGGATTTCAGGTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCC</genome_strand>
        <mrna_strand>TTTGTTCTCTCTTTAACCTCAATCTTTC-TTCTCTCTCTATTTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTG-AAAAAAAATTGGATTTTTTCATCTGGAATGCAAATCTTGGTTAAAGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGAGCAAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335166" ref_strand="+" ref_description="SGN-E335166 [cTOE-1-J7]">
      <seq>tttgttctctctttaacctcaatctttctttctctctctattttttgccctactctgttggggttctttaaaaatctgtatttttgagggttcttgaaaaaaaattggattttttcatctggaatgcgaatcttggttaaggatataatctgggttgtgtttttcttggttcaaaatctgatcttttttgctttacagtttgggattgaagaacaatcatgcctactcttgttaattacagcggtgatgatgagttctactctggtggatcgttttgttctgcaaatttgggtctcatgttgtctttgggtcatgctgatgtttactgtcctcctaggaagagggctagaattagtggcccctttgttgtcgaagaccgatcaaaggatccatctcttgaggttcttcctgatgaatgcctatttgagatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="5899" stop="4008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5599" g_stop="5356" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5355" i_stop="4497" i_length="859">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4496" g_stop="4308" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="432" r_length="189" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E335166" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5599" e_stop="5356"/>
          <exon e_start="4496" e_stop="4308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCTCTCTTTAACCTCAATCTTTCTTTCTCTCTCTATTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTGAAAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTGGTGAGTTTCAAAAAAACTTCATTTCTTTGTTATTTTAAGTTATGGGGTTGTTCATATTTCAATGAATTTTGAAGTTTCAGTTACAGTTTTTTGTTTTTTTCATCATGAATTACTGAGATAGAGATTGATTTGTTATGTTTTAGATTCATGTAATTTGTTAATCATGAATAAAGTTTATAAATTTATATAGTTACATGATTGTTGAGACTGAGAAGAAGATGAATTCTATTAAGGTTTAGATCCATGAATATAGTTTATAACTATGTCTAGGTGCATGATTGTTGATAACTTGAGATGAATATGGTTTATTAATTTACTGAAATGAAGATGATCTTTTAGGTTTAGATCCAATCATGTTCCTTTTTTTAAAAGGAAGTTGGTTATGAGATAATAACTAAGTTGAGTGACTATCTAAGAAATTAACTCATATAAACTTTGTATAGATGCATGATTGTTGAGGTGAATATGAACATTAATTTACTGAAATGGATAAAAAAAGGGAAAAAAGTTGTGATGAGGCTATATATTTGGCTTTGAAGATTAATTTCTGTGTTAGATAGATCTTCTTTTGTCTTATGTTCTGAATCTATGTTAAAGATTGGTAATATATTGAAGAAACTGTGGATTACTCTTTTGGGTTCTCTATCTAGAATGATCCATCTGATCTGATCTGAAGATGTATCTACATAATAGGTAGATCTAAAGGTTTAATTTACATGTGATGGTTGTTTATCTGTTGTGAAGTTGAAGTGAAAATTCATAAGAAATGGGCATATGGACTAGACAAAATTTAGTATGCTATAGCTTGTTGATTTAAGGGAAAATATAGCTGACAGTGTATGTTCTCCTTGGATTTCAGGTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCC</genome_strand>
        <mrna_strand>TTTGTTCTCTCTTTAACCTCAATCTTTCTTTCTCTCTCTATTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTG-AAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAAATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCCTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244031" ref_strand="+" ref_description="SGN-E244031 [cLEE-1-M2]">
      <seq>aacactataatacagtatatgaaaaaaatttttagcgatatttagttaacgataattagcatgttttagcaatgctaaatttaataatattttaattaatatgaataaaaattttagcatattttatttatgtgtatattgattatcactaaaaaatatttttattacaataacgtaccatgaattaattaatcggaccaatgaatacgttgattcacattataaaattacaaaaatatagtgtttcgaatgtctaaattaacatggtgccaatttggacttccaattattcatcttccacgcgttcaaatgtggtatttttctcttttcatattaagcgttatcgatgtatttttagattaaatttttaaatttttcaataaatttgagattattttaaaaatatataatattattaaattgttatattttaaagaggataaattagcgagatataatcatttctacatagttatcattaatacacatatgaaataaaattagtactagacgtgagtgacatttcgtgattaaagtctttattaatatatgttttgttaattaaaaattaaaatgtatttaataaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="7903" stop="6715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7603" g_stop="7015" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E244031" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7603" e_stop="7015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTATAATACAGTATATGAAAAAAATTTTTAGCGATATTTAGTTAACGATAATTAGCATGTTTTAGCAATGCTAAATTTAATAATATTTTAATTAATATGAATAAAAATTTTAGCATATTTTATTTATGTGTATATTGATTATCACTAAAAAATATTTTTATTACAATAACGTACCATGAATTAATTAATCGGACCAATGAATACGTTGATTCACATTATAAAATTACAAAAATATAGTGTTTCGAATGTCTAAATTAACATGGTGCCAATTTGGACTTCCAATTATTCATCTTCCACGCGTTCAAATGTGGTATTTTTCTCTTTTCATATTAAGCGTTATCGATGTATTTTTAGATTAAATTTTTAAATTTTTCAATAAATTTGAGATTATTTTAAAAATATATAATATTATTAAATTGTTATATTTTAAAGAGGATAAATTAGCGAGATATAATCATTTCTACATAGTTATCATTAATACACATATGAAATAAAATTAGTACTAGACGTGAGTGACATTTCGTGATTAAAGTCTTTATTAATATATGTTTTGTTAATTAAAAATTAAAATGTATTTAATAAATA</genome_strand>
        <mrna_strand>AACACTATAATACAGTATATGAAAAAAATTTTTAGCGATATTTAGTTAACGATAATTAGCATGTTTTAGCAATGCTAAATTTAATAATATTTTAATTAATATGAATAAAAATTTTAGCATATTTTATTTATGTGTATATTGATTATCACTAAAAAATATTTTTATTACAATAACGTACCATGAATTAATTAATCGGACCAATGAATACGTTGATTCACATTATAAAATTACAAAAATATAGTGTTTCGAATGTCTAAATTAACATGGTGCCAATTTGGACTTCCAATTATTCATCTTCCACGCGTTCAAATGTGGTATTTTTCTCTTTTCATATTAAGCGTTATCGATGTATTTTTAGATTAAATTTTTAAATTTTTCAATAAATTTGAGATTATTTTAAAAATATATAATATTATTAAATTGTTATATTTTAAAGAGGATAAATTAGCGAGATATAATCATTTCTACATAGTTATCATTAATACACATATGAAATAAAATTAGTACTAGACGTGAGTGACATTTCGTGATTAAAGTCTTTATTAATATATGTTTTGTTAATTAAAAATTAAAATGTATTTAATAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="9768" stop="10653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10068" g_stop="10353" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10068" e_stop="10353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAAGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTATTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGTAGATGGTTAGAACTAGAGCAACAACTACGCCAACACTAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="11092" stop="10060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10792" g_stop="10360" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10792" e_stop="10360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTACATGCCCTGTAGTCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACCGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCATTTCCTTATTTTGCACTTTTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCAGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACAGCCCCTTGCCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="11449" stop="10131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11150" g_stop="10431" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11150" e_stop="10431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATTCGCTCTTGAGGACTAAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACAACCTAACTTGCTCTAGGCTCAAGAACTCATCTCTTTTTCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAATAAGCTAGAGAAGGAGGCCCAAGTTATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCATCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATTGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTACATGCCCTGTAGTCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACCGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCATTTCCTTATTTTGCACTTTTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACCTCCTCAGTCAGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="11447" stop="10184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11147" g_stop="10484" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11147" e_stop="10484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGCTCTTGAGGACTAAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACAACCTAACTTGCTCTAGGCTCAAGAACTCATCTCTTTTTCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAATAAGCTAGAGAAGGAGGCCCAAGTTATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCATCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATTGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTACATGCCCTGTAGTCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACCGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCATTTCCTTATTTTGCACTTTTTCAGTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="12086" stop="10698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11786" g_stop="10998" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11786" e_stop="10998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAATAATACGGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATTAGATGCCTCCGCTTCAGACCGCCCAGGGAAAG-GTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTGGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGATTAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACTTCCCGAACCCTGCCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTAATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGACGAATTCGCTCTTGAGGACTAAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACAACCTAACTTGCTCTAGGCTCAAGAACTCATCTCTTTTTCTATCCCTCAAAGTTCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="12010" stop="10714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11710" g_stop="11014" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11710" e_stop="11014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAG-GTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTGGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGATTAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACTTCCCGAACCCTGCCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTAATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGACGAATTCGCTCTTGAGGACTAAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACAACCTAACTTGCTCTAGGCTCAAGAACTCATCTCTTTTTCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="10754" stop="12761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11054" g_stop="11226" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11227" i_stop="11969" i_length="743">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11970" g_stop="12497" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11054" e_stop="11226"/>
          <exon e_start="11970" e_stop="12497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTTAGGTTGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTTAGTCCTCAAGAGCGAATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACTACGACATCGACATTAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTACTTACACTAGAGGGCAGGGTTCGGGAAGTTACTCAGTTCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGGGGCCTATGCTTGACTCCAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTAATCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACCACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTAATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCCGTATTATTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTTCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAAGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGATTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCAGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGTTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 [cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="12166" stop="10804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11866" g_stop="11104" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11866" e_stop="11104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAATAATACGGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATTAGATGCCTCCGCTTCAGACCGCCCAGGGAAAG-GTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTGGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGATTAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACTTCCCGAACCCTGCCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTAATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGACGAATTCGCTCTTGAGGACTAAAACAGAGTTGAGTGGCATATCTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTGAACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="12084" stop="10952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11784" g_stop="11252" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11784" e_stop="11252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAATAATACGGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATTAGATGCCTCCGCTTCAGACCGCCCAGGGAAAG-GTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTGGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGATTAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACTTCCCGAACCCTGCCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTAATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="12170" stop="11013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11870" g_stop="11313" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11870" e_stop="11313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAATAATACGGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATTAGATGCCTCCGCTTCAGACCGCCCAGGGAAAG-GTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTGGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGATTAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACTTCCCGAACCCTGCCCTCTAGTGTAAGTACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="12780" stop="11419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12480" g_stop="11719" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12480" e_stop="11719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAACACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAATCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCTTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAATAATACGGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATTAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="12377" stop="11451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12077" g_stop="11747" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12077" e_stop="11747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAATAATACGGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="12780" stop="11520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12480" g_stop="11820" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12480" e_stop="11820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAACACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAATCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCTTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="12849" stop="11591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12549" g_stop="11891" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12549" e_stop="11891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAACACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAATCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCTTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="13298" stop="12019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12998" g_stop="12319" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12998" e_stop="12319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTAAAAATTCGTAATGCCCATACCTCGTTCGAAAAGTAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAATCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAACACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTG</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="13369" stop="12057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13069" g_stop="12357" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13069" e_stop="12357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCAACTGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTTGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTAAAAATTCGTAATGCCCATACCTCGTTCGAAAAGTAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAATCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAACACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="13369" stop="12174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13069" g_stop="12474" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13069" e_stop="12474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCAACTGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTTGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTAAAAATTCGTAATGCCCATACCTCGTTCGAAAAGTAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAATCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="13369" stop="12244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13069" g_stop="12544" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13069" e_stop="12544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCAACTGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTTGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTAAAAATTCGTAATGCCCATACCTCGTTCGAAAAGTAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAATCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="13298" stop="12340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12998" g_stop="12640" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12998" e_stop="12640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTAAAAATTCGTAATGCCCATACCTCGTTCGAAAAGTAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="14760" stop="13983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14460" g_stop="14284" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14460" e_stop="14284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCTGCTAAAGGTAGGAAACTATCTCAATGGCCACCAAACTCTATCACACATGCATGAAGCATATCCTCCAACACTTGAATTGTTCGCTCAGACTGACCGTCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213783" ref_strand="+" ref_description="SGN-E213783 [cLEC-76-M5]">
      <seq>cgcaatctacttgatctaactacgtgcagacatgccaaggacttgggcattggtcttggcatggatgatggcaaaacagtgcaacacaagttcaaggtgcttgggtgttggcaaggcagcttgaacgtgcatggcttacgtgcgggctaagggcgttgacaagacaacatgttgacttgatgaagcaaggctgtgaagacttggcaagggcaaaaaaaaaagcagttcaccccaaattgctgaaataaaactaagtggggaaaaaagctaaaatattccaaatggtggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="25755" stop="26646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26055" g_stop="26346" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E213783" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26055" e_stop="26346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGATTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAACTTGAACGTGCATGGTTTACGTGCGGGCTAAGGGCGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGATCAAAGACAAAGGCAGTTCACCCGAAATTGCTGAGATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGGAAGC</genome_strand>
        <mrna_strand>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCGGGCTAAGGGCGTTGACAAGACAACATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGGCAAAAAAAAAAGCAGTTCACCCCAAATTGCTGAAATAAAACTAAGTGGGGAAAAAAGCTAAAATATTCCAAATGGTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207313" ref_strand="+" ref_description="SGN-E207313 [cLEC-30-L1]">
      <seq>gcaatctacttgatctaactacgtgcagacatgccaaggacttgggcattggtcttggcatggatgatggcaaaacagtgcaacacaagttcaaagtgcttgggtgttggcaaggcagcttgaacgtgcatggcttacgtgccggctaagggcgttgacaagacaacatgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="25756" stop="26530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26056" g_stop="26230" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E207313" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26056" e_stop="26230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGATTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAACTTGAACGTGCATGGTTTACGTGCGGGCTAAGGGCGTTGGCAAGACAGCATGTTGAC</genome_strand>
        <mrna_strand>GCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAAGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCCGGCTAAGGGCGTTGACAAGACAACATGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548510" ref_strand="+" ref_description="SGN-E548510 [TUS-61-N21]">
      <seq>tgaaatttgaaaaacttcccataaattccattaaaaaacaatcatttttatattcatttttctacatatttcatcatatagatacactgattgttgtatctattagcttttgcttgtaagaaacccttatacacattaaagaatactataaagattcaattttgtatagcaatcatcacttctttcttgttctaatccattcaagaagaaggttaatctgtccttttcacttctctttttttttcaaataccctttgttcaagactcttcctttaagatggcttctatatcacccttatctcaatctcaaccccttttggagaaacctcagtttacagttttgaacaagtctcaaaatcagtttttttcaatacccttttcaagattcactcaaagttgtaatctttctttgaaaaaatcaaggatggtggttgtttcagcaacaactgctgctgagaaatcaaataagaggtatcctggtgaggctaaggggtttgtggaggaaatgaggtttgtggctatgaagttgcatactaaggaccaggctaaggaaggggaaaaagagcctgtagatcagcctttggccaagtgggagcctagtgttgaagggtacttgaagttcttggtggatagcaaattggtttatgatactttgggaaagattgtggaaaacgctcctttttcctgagtatgctgagttcaggaatacaggattagaaaggtctgaggttctagcaaaagatttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="32813" stop="35285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33113" g_stop="33801" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33802" i_stop="34926" i_length="1125">
            <donor d_prob="0.953" d_score="0.88"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34927" g_stop="34985" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="749" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E548510" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33113" e_stop="33801"/>
          <exon e_start="34927" e_stop="34985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTTGAAAAACTTCCCATAAATTCCATTAAAAAACAATCATTTTTATATTCATTTTTCTACATATTTCATCATATAGATACACTGATTGTTGTATCTATTAGCTTTTGCTTGTAAGAAACCCTTATACACATTAAAGAATACTATAAAGATTCAATTTTGTATAGCAATCATCACTTCTTTCTTGTTCTAATCCATTCAAGAAGAAGGTTAATCTGTCCTTTTCACTTCTCTTTTTTTTTCAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATATCACCCTTATCTCAATCTCAACCCCTTTTGGAGAAACCTCAGTTTACAGTTTTGAACAAGTCTCAAAATCAGTTTTTTTCAATACCCTTTTCAAGATTCACTCAAAGTTGTAATCTTTCTTTGAAAAAATCAAGGATGGTGGTTGTTTCAGCAACAACTGCTGCTGAGAAATCAAATAAGAGGTATCCTGGTGAGGCTAAGGGGTTTGTGGAGGAAATGAGGTTTGTGGCTATGAAGTTGCATACTAAGGACCAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCCAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAGAATTGTGGAAAAGGCTCC-TTTTCCTGAGTGTGAGTTTTTCTTAATTTATGTGCATCTGTTAGTGTTGTAATATGTTGTTTTGTTTGGTTCATGGTATTGACAATTGAATAACTTGACTGATTGGTTCTGCTTTGGGGTGTTTTGTTTGGTTCATGGGTATTGACAATTGAACCATTTGACTGATTGGTTCAGCTGTGTGTGTGTGGTGGGGGGGGTGGGGGGGGATTAGTATGTTATACTCTTTTAACTGTGGAATTTTGAGATGAGTTTTTCAATTCTGTTGGTACCTATGCTGCTTTTTTGTCATTGATTCTTTGATATCCATTAAGGTTCTAATATATTGTTTTGTTTGGTTCATGCTATTGATAATTGAAAACGCTTGATGGATTCCTCCTTTTGTGGGAATATATTATACTCTTTAATCAGTTGAGGAGTAGTCTCTGATCCTCATTTTCTTTTGTGTAAACAGAAAGTTCCCAGTTGTATAGAAAATCATGCTTAGTAGATTCTTTACTTTTTGGTATATTACATGTATATGGCCAGTTTGACCATGTTTATGAATGAATATACTATACTTGCACTTGATCAAAAAAATAATTTACTCTTTAAACTTTGGAGATCATTGTGGAAAAGGTTTGTTGGTTTCTATTGGTATTTCTGAGCAACATGGTAGTTGATAATTGATGATTTTATTATCATCGAGTTGTGATCTTCGGTTCCCAAACAAGTAGATGTTGAAATTCATTCCATAAGCTGTAACTCAATAGTGAGCTAACAAAGACATGTAAAGGGATATGGTAGAATTTGTCTTCTGGATGATAGAGAAGCTCAGTTGTGAGAGAAGAACTGATTTGCTGATGTTGTTTTGAACCAATCAGTTGAATTTCAGCTCTAACTAATGACCCCAGGGCTGATCTGCTACGCTTCCTTTTTCTTTCCCTTTGGTTGTTTCAGCTTTATGTTTAGTAATGCTTTTTCACCAACGGAGTTCACAACATGAATAAGTTAACTTGCTTTACATACAAAGTACTTTGCTTTTCTTTTACGGCAAAGGCATGTGATCTGTGCCTTTCCAAGCACACTCTCCACATAGATGCATAAATAAATGAGTTGGTAGTAAAACAGAATCTTAGAACTCTTACATTTGACTGCAGATGCTGAGTTCAGGAATACAGGATTAGAAAGGTCTGAGGTTCTAGCAAAGGATTTGGAA</genome_strand>
        <mrna_strand>TGAAATTTGAAAAACTTCCCATAAATTCCATTAAAAAACAATCATTTTTATATTCATTTTTCTACATATTTCATCATATAGATACACTGATTGTTGTATCTATTAGCTTTTGCTTGTAAGAAACCCTTATACACATTAAAGAATACTATAAAGATTCAATTTTGTATAGCAATCATCACTTCTTTCTTGTTCTAATCCATTCAAGAAGAAGGTTAATCTGTCCTTTTCACTTCTCTTTTTTTTTCAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATATCACCCTTATCTCAATCTCAACCCCTTTTGGAGAAACCTCAGTTTACAGTTTTGAACAAGTCTCAAAATCAGTTTTTTTCAATACCCTTTTCAAGATTCACTCAAAGTTGTAATCTTTCTTTGAAAAAATCAAGGATGGTGGTTGTTTCAGCAACAACTGCTGCTGAGAAATCAAATAAGAGGTATCCTGGTGAGGCTAAGGGGTTTGTGGAGGAAATGAGGTTTGTGGCTATGAAGTTGCATACTAAGGACCAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCCAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGGAAAGATTGTGGAAAACGCTCCTTTTTCCTGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGAGTTCAGGAATACAGGATTAGAAAGGTCTGAGGTTCTAGCAAAAGATTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294604" ref_strand="+" ref_description="SGN-E294604 [cLET-22-N7]">
      <seq>atatttcatcatatagatacactgattgttgtatctattagcttttgcttggaagaaacccttatacacattaaagaatactatcaagattcaattttgtatagcaatcatcacttctttcttgttctaatccattcaatgaagaaggttaatctgtccttttcacttctctttttttttcaaataccctttgttcaagactcttcctttaagatggcttctatatcacccttatctcaatctcaaccccttttggagaaacctcagtttacagttttgaacaagtctcaaaatcagcttttttcaatacccttttcaagattcactcaaagttgtaatctttctttgaaaaaatcaaggatggtggttgtttcagcaacaactgctgctgagaaatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="32878" stop="33877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33178" g_stop="33577" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E294604" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33178" e_stop="33577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTCATCATATAGATACACTGATTGTTGTATCTATTAGCTTTTGCTTGTAAGAAACCCTTATACACATTAAAGAATACTATAAAGATTCAATTTTGTATAGCAATCATCACTTCTTTCTTGTTCTAATCCATTCAA-GAAGAAGGTTAATCTGTCCTTTTCACTTCTCTTTTTTTTTCAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATATCACCCTTATCTCAATCTCAACCCCTTTTGGAGAAACCTCAGTTTACAGTTTTGAACAAGTCTCAAAATCAGTTTTTTTCAATACCCTTTTCAAGATTCACTCAAAGTTGTAATCTTTCTTTGAAAAAATCAAGGATGGTGGTTGTTTCAGCAACAACTGCTGCTGAGAAATCAAA</genome_strand>
        <mrna_strand>ATATTTCATCATATAGATACACTGATTGTTGTATCTATTAGCTTTTGCTTGGAAGAAACCCTTATACACATTAAAGAATACTATCAAGATTCAATTTTGTATAGCAATCATCACTTCTTTCTTGTTCTAATCCATTCAATGAAGAAGGTTAATCTGTCCTTTTCACTTCTCTTTTTTTTTCAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATATCACCCTTATCTCAATCTCAACCCCTTTTGGAGAAACCTCAGTTTACAGTTTTGAACAAGTCTCAAAATCAGCTTTTTTCAATACCCTTTTCAAGATTCACTCAAAGTTGTAATCTTTCTTTGAAAAAATCAAGGATGGTGGTTGTTTCAGCAACAACTGCTGCTGAGAAATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416973" ref_strand="+" ref_description="SGN-E416973 [STM-24-O17]">
      <seq>aaaagattcaaattttttttgcaatcagcacttctttcttgttccaatccattcaagaagaaggttaatctgtccttttcacttctttttttcaaataccctttgttcaagactcttcctttaagatggcttctataacacccttatctcaatctcaaccccttttggagaaaactcactttacagttttgaacaagcctcaaaatcagttttgttcaataccctttgcaagattcactcgaagttctaatctttctttgaaaaaatcaaggatggtggtagtttcagcaacaactgctgctgagaaatcaaataagaggtaccctggtgaggctaaggggtttgtggaggaaatgaggtttgtggctatgaaattgcatactaaggaccaggctaaggaaggggaaaaagagcctgtagatcagcctttggctaagtgggagcctagtgttgaagggtacttgaagttcttggtggatagcaaattggtttatgatactttggaaaaaattgtggaaaaggctccttttcctgagtatggtgagttcaggaacacaggattagaaaggtctgaggttctagcaaaggatttggaatggtttangcagcaaggtcatgccatcccggaaccatcaacgcctggtgtcacctatgcttgttacttagaggagctatcagaaaaggatcctcaagcatttgtttgccatttttacaacacctactttgctcattcagctggaggccgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="32962" stop="35438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33261" g_stop="33801" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33802" i_stop="34926" i_length="1125">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34927" g_stop="35138" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="749" r_length="212" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E416973" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33261" e_stop="33801"/>
          <exon e_start="34927" e_stop="35138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGATTCAATTTTGTATAGCAATCATCACTTCTTTCTTGTTCTAATCCATTCAAGAAGAAGGTTAATCTGTCCTTTTCACTTCTCTTTTTTTTTCAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATATCACCCTTATCTCAATCTCAACCCCTTTTGGAGAAACCTCAGTTTACAGTTTTGAACAAGTCTCAAAATCAGTTTTTTTCAATACCCTTTTCAAGATTCACTCAAAGTTGTAATCTTTCTTTGAAAAAATCAAGGATGGTGGTTGTTTCAGCAACAACTGCTGCTGAGAAATCAAATAAGAGGTATCCTGGTGAGGCTAAGGGGTTTGTGGAGGAAATGAGGTTTGTGGCTATGAAGTTGCATACTAAGGACCAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCCAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAGAATTGTGGAAAAGGCTCCTTTTCCTGAGTGTGAGTTTTTCTTAATTTATGTGCATCTGTTAGTGTTGTAATATGTTGTTTTGTTTGGTTCATGGTATTGACAATTGAATAACTTGACTGATTGGTTCTGCTTTGGGGTGTTTTGTTTGGTTCATGGGTATTGACAATTGAACCATTTGACTGATTGGTTCAGCTGTGTGTGTGTGGTGGGGGGGGTGGGGGGGGATTAGTATGTTATACTCTTTTAACTGTGGAATTTTGAGATGAGTTTTTCAATTCTGTTGGTACCTATGCTGCTTTTTTGTCATTGATTCTTTGATATCCATTAAGGTTCTAATATATTGTTTTGTTTGGTTCATGCTATTGATAATTGAAAACGCTTGATGGATTCCTCCTTTTGTGGGAATATATTATACTCTTTAATCAGTTGAGGAGTAGTCTCTGATCCTCATTTTCTTTTGTGTAAACAGAAAGTTCCCAGTTGTATAGAAAATCATGCTTAGTAGATTCTTTACTTTTTGGTATATTACATGTATATGGCCAGTTTGACCATGTTTATGAATGAATATACTATACTTGCACTTGATCAAAAAAATAATTTACTCTTTAAACTTTGGAGATCATTGTGGAAAAGGTTTGTTGGTTTCTATTGGTATTTCTGAGCAACATGGTAGTTGATAATTGATGATTTTATTATCATCGAGTTGTGATCTTCGGTTCCCAAACAAGTAGATGTTGAAATTCATTCCATAAGCTGTAACTCAATAGTGAGCTAACAAAGACATGTAAAGGGATATGGTAGAATTTGTCTTCTGGATGATAGAGAAGCTCAGTTGTGAGAGAAGAACTGATTTGCTGATGTTGTTTTGAACCAATCAGTTGAATTTCAGCTCTAACTAATGACCCCAGGGCTGATCTGCTACGCTTCCTTTTTCTTTCCCTTTGGTTGTTTCAGCTTTATGTTTAGTAATGCTTTTTCACCAACGGAGTTCACAACATGAATAAGTTAACTTGCTTTACATACAAAGTACTTTGCTTTTCTTTTACGGCAAAGGCATGTGATCTGTGCCTTTCCAAGCACACTCTCCACATAGATGCATAAATAAATGAGTTGGTAGTAAAACAGAATCTTAGAACTCTTACATTTGACTGCAGATGCTGAGTTCAGGAATACAGGATTAGAAAGGTCTGAGGTTCTAGCAAAGGATTTGGAATGGTTTAGGCAGCAGGGTCATGCCATCCCGGAACCATCAACTCCTGGTGTCACCTATGCTAGTTACTTAGAGGAGCTATCAGAAAAGGATCCTCAAGCATTTATTTGCCATTTTTACAACACCTACTTTGCTCATTCAGCTGGAGGCCGCATG</genome_strand>
        <mrna_strand>AAAAGATTCAAATTTTTTTTGCAATCAGCACTTCTTTCTTGTTCCAATCCATTCAAGAAGAAGGTTAATCTGTCCTTTTCACTTCT-TTTT-TT--CAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATAACACCCTTATCTCAATCTCAACCCCTTTTGGAGAAAACTCACTTTACAGTTTTGAACAAGCCTCAAAATCAGTTTTGTTCAATACCCTTTGCAAGATTCACTCGAAGTTCTAATCTTTCTTTGAAAAAATCAAGGATGGTGGTAGTTTCAGCAACAACTGCTGCTGAGAAATCAAATAAGAGGTACCCTGGTGAGGCTAAGGGGTTTGTGGAGGAAATGAGGTTTGTGGCTATGAAATTGCATACTAAGGACCAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCTAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAAAATTGTGGAAAAGGCTCCTTTTCCTGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGAGTTCAGGAACACAGGATTAGAAAGGTCTGAGGTTCTAGCAAAGGATTTGGAATGGTTTANGCAGCAAGGTCATGCCATCCCGGAACCATCAACGCCTGGTGTCACCTATGCTTGTTACTTAGAGGAGCTATCAGAAAAGGATCCTCAAGCATTTGTTTGCCATTTTTACAACACCTACTTTGCTCATTCAGCTGGAGGCCGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439973" ref_strand="+" ref_description="SGN-E439973 [cSTA-14-B11]">
      <seq>aaaagattcaaattttttttgcaatcagcacttctttcttgttccaatccattcaagaagaaggttaatctgtccttttcacttctttttttcaaataccctttgttcaagactcttcctttaagatggcttctataacacccttatctcaatctcaaccccttttggagaaaactcactttacagttttgaacaagcctcaaaatcagttttgttcaataccctttgcaagattcactcgaagttctaatctttctttgaaaaaatcaaggatggtggtagtttcagcaacaactgctgctgagaaatcaaataagaggtaccctggtgaggctaaggggtttgtggaggaaatgaggtttgtggctatgaaattgcatactaaggaccaggctaaggaaggggaaaaagagcctgtagatcagcctttggctaagtgggagcctagtgttgaagggtacttgaagttcttggtggatagcaaattggtttatgatactttggaaaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="32962" stop="34076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33261" g_stop="33776" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E439973" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33261" e_stop="33776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGATTCAATTTTGTATAGCAATCATCACTTCTTTCTTGTTCTAATCCATTCAAGAAGAAGGTTAATCTGTCCTTTTCACTTCTCTTTTTTTTTCAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATATCACCCTTATCTCAATCTCAACCCCTTTTGGAGAAACCTCAGTTTACAGTTTTGAACAAGTCTCAAAATCAGTTTTTTTCAATACCCTTTTCAAGATTCACTCAAAGTTGTAATCTTTCTTTGAAAAAATCAAGGATGGTGGTTGTTTCAGCAACAACTGCTGCTGAGAAATCAAATAAGAGGTATCCTGGTGAGGCTAAGGGGTTTGTGGAGGAAATGAGGTTTGTGGCTATGAAGTTGCATACTAAGGACCAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCCAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAGAATT</genome_strand>
        <mrna_strand>AAAAGATTCAAATTTTTTTTGCAATCAGCACTTCTTTCTTGTTCCAATCCATTCAAGAAGAAGGTTAATCTGTCCTTTTCACTTCT-TTTT-TT--CAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATAACACCCTTATCTCAATCTCAACCCCTTTTGGAGAAAACTCACTTTACAGTTTTGAACAAGCCTCAAAATCAGTTTTGTTCAATACCCTTTGCAAGATTCACTCGAAGTTCTAATCTTTCTTTGAAAAAATCAAGGATGGTGGTAGTTTCAGCAACAACTGCTGCTGAGAAATCAAATAAGAGGTACCCTGGTGAGGCTAAGGGGTTTGTGGAGGAAATGAGGTTTGTGGCTATGAAATTGCATACTAAGGACCAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCTAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449855" ref_strand="+" ref_description="SGN-E449855 [cSTS-7-P9]">
      <seq>cgagttttttttttttgcaatcagcacttctttcttgttccaatccattcaagaagaaggttaatctgtccttttcacttctttttttcaaataccctttgttcaagactcttcctttaagatggcttctataacacccttatctcaatctcaaccccttttggagaaaactcagtttacagttttgaacaagcctcaaaatcagttttgttcaatacccttttcaagattcactcaaagttctaatctttctttgaaaaaatcaaggatggtggtagtttcagcaacaactgctgctgagaaatctaataagaggtaccctggtgaggctaaggggtttgtggaggaaatgaggtttgtggctatgaaattgcatactaaggaccaggctaaggaaggggaaaaagagcctgtagatcagcctttggctaagtgggagcctagtgttgaagggtacttgaagttcttggtggatagcaaattggtttatgatactttggaaaaaattgtggaaaaggctccttttcctgagtatgctgagttcaggaacacaggattagaaaggtctgaggttctagcaaaggatttggaatggtttaggcagcaaggtcatgccatcccgggaccgtcaactcctggtgtcacatatgctcgttacttagaagagctatcagaaaaagatccctcagcatttatttgccatttttacaacacctactttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="32972" stop="35417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33264" g_stop="33801" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33802" i_stop="34926" i_length="1125">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34927" g_stop="35117" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="724" r_length="191" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E449855" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33264" e_stop="33801"/>
          <exon e_start="34927" e_stop="35117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTCAATTTTGTATAGCAATCATCACTTCTTTCTTGTTCTAATCCATTCAAGAAGAAGGTTAATCTGTCCTTTTCACTTCTCTTTTTTTTTCAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATATCACCCTTATCTCAATCTCAACCCCTTTTGGAGAAACCTCAGTTTACAGTTTTGAACAAGTCTCAAAATCAGTTTTTTTCAATACCCTTTTCAAGATTCACTCAAAGTTGTAATCTTTCTTTGAAAAAATCAAGGATGGTGGTTGTTTCAGCAACAACTGCTGCTGAGAAATCAAATAAGAGGTATCCTGGTGAGGCTAAGGGGTTTGTGGAGGAAATGAGGTTTGTGGCTATGAAGTTGCATACTAAGGACCAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCCAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAGAATTGTGGAAAAGGCTCCTTTTCCTGAGTGTGAGTTTTTCTTAATTTATGTGCATCTGTTAGTGTTGTAATATGTTGTTTTGTTTGGTTCATGGTATTGACAATTGAATAACTTGACTGATTGGTTCTGCTTTGGGGTGTTTTGTTTGGTTCATGGGTATTGACAATTGAACCATTTGACTGATTGGTTCAGCTGTGTGTGTGTGGTGGGGGGGGTGGGGGGGGATTAGTATGTTATACTCTTTTAACTGTGGAATTTTGAGATGAGTTTTTCAATTCTGTTGGTACCTATGCTGCTTTTTTGTCATTGATTCTTTGATATCCATTAAGGTTCTAATATATTGTTTTGTTTGGTTCATGCTATTGATAATTGAAAACGCTTGATGGATTCCTCCTTTTGTGGGAATATATTATACTCTTTAATCAGTTGAGGAGTAGTCTCTGATCCTCATTTTCTTTTGTGTAAACAGAAAGTTCCCAGTTGTATAGAAAATCATGCTTAGTAGATTCTTTACTTTTTGGTATATTACATGTATATGGCCAGTTTGACCATGTTTATGAATGAATATACTATACTTGCACTTGATCAAAAAAATAATTTACTCTTTAAACTTTGGAGATCATTGTGGAAAAGGTTTGTTGGTTTCTATTGGTATTTCTGAGCAACATGGTAGTTGATAATTGATGATTTTATTATCATCGAGTTGTGATCTTCGGTTCCCAAACAAGTAGATGTTGAAATTCATTCCATAAGCTGTAACTCAATAGTGAGCTAACAAAGACATGTAAAGGGATATGGTAGAATTTGTCTTCTGGATGATAGAGAAGCTCAGTTGTGAGAGAAGAACTGATTTGCTGATGTTGTTTTGAACCAATCAGTTGAATTTCAGCTCTAACTAATGACCCCAGGGCTGATCTGCTACGCTTCCTTTTTCTTTCCCTTTGGTTGTTTCAGCTTTATGTTTAGTAATGCTTTTTCACCAACGGAGTTCACAACATGAATAAGTTAACTTGCTTTACATACAAAGTACTTTGCTTTTCTTTTACGGCAAAGGCATGTGATCTGTGCCTTTCCAAGCACACTCTCCACATAGATGCATAAATAAATGAGTTGGTAGTAAAACAGAATCTTAGAACTCTTACATTTGACTGCAGATGCTGAGTTCAGGAATACAGGATTAGAAAGGTCTGAGGTTCTAGCAAAGGATTTGGAATGGTTTAGGCAGCAGGGTCATGCCATCCCGGAACCATCAACTCCTGGTGTCACCTATGCTAGTTACTTAGAGGAGCTATCAGAAAAGGATCCTCAAGCATTTATTTGCCATTTTTACAACACCTACTTTGCT</genome_strand>
        <mrna_strand>CGAGT-TTTTTTTTTTTGCAATCAGCACTTCTTTCTTGTTCCAATCCATTCAAGAAGAAGGTTAATCTGTCCTTTTCAC-T-TC--TTTTTTTCAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATAACACCCTTATCTCAATCTCAACCCCTTTTGGAGAAAACTCAGTTTACAGTTTTGAACAAGCCTCAAAATCAGTTTTGTTCAATACCCTTTTCAAGATTCACTCAAAGTTCTAATCTTTCTTTGAAAAAATCAAGGATGGTGGTAGTTTCAGCAACAACTGCTGCTGAGAAATCTAATAAGAGGTACCCTGGTGAGGCTAAGGGGTTTGTGGAGGAAATGAGGTTTGTGGCTATGAAATTGCATACTAAGGACCAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCTAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAAAATTGTGGAAAAGGCTCCTTTTCCTGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGAGTTCAGGAACACAGGATTAGAAAGGTCTGAGGTTCTAGCAAAGGATTTGGAATGGTTTAGGCAGCAAGGTCATGCCATCCCGGGACCGTCAACTCCTGGTGTCACATATGCTCGTTACTTAGAAGAGCTATCAGAAAAAGATCCCTCAGCATTTATTTGCCATTTTTACAACACCTACTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569885" ref_strand="+" ref_description="SGN-E569885 [14382]">
      <seq>atctgtccttttcacttctttttttcaaataccctttgttcaagactcttcctttaagatggcttctataacacccttatctcaatctcaacccctttgggagaaaactcagtttacagttttgaacaagcctcaaaatcagttttgttcaatacccttttcaaggattcactcaaagttctaatctttctttgaaaaaatcaagggatggtggtggtttcagcaacaactgctgctgagaaatctaataagaggtaccctggtgaggctaaggggtttgtggaggaaatgaggtttgtggctatgaaattgcatactaaggaccaggctaaggaaggggaaaaagagcctgtagatcagcctttggctaagtgggagcctagtgttgaagggtacttgaagttcttgggtggatagcaaattggtttatgatactttggaaaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="33035" stop="34076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33328" g_stop="33776" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E569885" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33328" e_stop="33776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTCCTTTTCACTTCTCTTTTTTTTTCAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATATCACCCTTATCTCAATCTCAACCCCTTTTGGAGAAACCTCAGTTTACAGTTTTGAACAAGTCTCAAAATCAGTTTTTTTCAATACCCTTTTCAA-GATTCACTCAAAGTTGTAATCTTTCTTTGAAAAAATCAA-GGATGGTGGTTGTTTCAGCAACAACTGCTGCTGAGAAATCAAATAAGAGGTATCCTGGTGAGGCTAAGGGGTTTGTGGAGGAAATGAGGTTTGTGGCTATGAAGTTGCATACTAAGGACCAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCCAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTT-GGTGGATAGCAAATTGGTTTATGATACTTTGGAAAGAATT</genome_strand>
        <mrna_strand>ATCTGTCCTTTTCAC-T-TC--TTTTTTTCAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATAACACCCTTATCTCAATCTCAACCCCTTTGGGAGAAAACTCAGTTTACAGTTTTGAACAAGCCTCAAAATCAGTTTTGTTCAATACCCTTTTCAAGGATTCACTCAAAGTTCTAATCTTTCTTTGAAAAAATCAAGGGATGGTGGTGGTTTCAGCAACAACTGCTGCTGAGAAATCTAATAAGAGGTACCCTGGTGAGGCTAAGGGGTTTGTGGAGGAAATGAGGTTTGTGGCTATGAAATTGCATACTAAGGACCAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCTAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367452" ref_strand="+" ref_description="SGN-E367452 [cLPT-7-N12]">
      <seq>tcacttattctttttttcaaataccctttgttcaagactcttcctttaagatggcttctgtatcacccttatctcaatctcaaccccttttggagaaacctcagttttcagttttgaacaagtttcaaagccagtttttttcaatacccttttcaagtttcactcaaagttgtaatctttctttgaaaaaatcaaggatggtcgtagtttcagcaacaactgctgctgagaaatcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="33039" stop="33878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33339" g_stop="33578" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E367452" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33339" e_stop="33578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTCTCTTTTTTTTTCAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATATCACCCTTATCTCAATCTCAACCCCTTTTGGAGAAACCTCAGTTTACAGTTTTGAACAAGTCTCAAAATCAGTTTTTTTCAATACCCTTTTCAAGATTCACTCAAAGTTGTAATCTTTCTTTGAAAAAATCAAGGATGGTGGTTGTTTCAGCAACAACTGCTGCTGAGAAATCAAAT</genome_strand>
        <mrna_strand>TCACTTAT-TCTTTTTTTCAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTGTATCACCCTTATCTCAATCTCAACCCCTTTTGGAGAAACCTCAGTTTTCAGTTTTGAACAAGTTTCAAAGCCAGTTTTTTTCAATACCCTTTTCAAGTTTCACTCAAAGTTGTAATCTTTCTTTGAAAAAATCAAGGATGGTCGTAGTTTCAGCAACAACTGCTGCTGAGAAATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541196" ref_strand="+" ref_description="SGN-E541196 [TUS-61-N21](-)">
      <seq>ctgagaaatcaaataagaggtatcctggtgaggctaaggggtttgtgagggaaatgaggtttgtggctatgaagttgcatactaaggaccaggctaaggaaggggaaaaagagcctgtagatcagcctttggccaagtgggagcctagtgttgaagggtacttgaagttcttggtggatagcaaattggtttatgatactttggaaagaattgtggaaaaggctccttttcctgagtatgctgagttcaggaatacaggattagaaaggtctgaggttctagcaaaggatttggaatggtttaggcagcagggtcatgccatcccggaaccatcaactcctggtgtcacctatgctagttacttagaggagctatcagaaaaggatcctcaagcatttatttgccatttttacaacacctactttgctcattcagctggaggccgcatgatagggaaaaaggtagctgaaaaggtacttgacaagaaagagctggaattctacaaatgggacggcgatctttctcagctgctgcagaatgttagggataagctgaacaaagttgcagaaaactggactagagaggagaagaatcattgtctggaagagacagagaagtcattcaagttctccggggccattctccgtttgatattttcttgatgcacaactttgcgctttgtttcctcgttttaacttgtacattggatggttgaaaggtcaaatttctttgaatatttgtgttccttttcactttctttctgtctatgttgtgtaagaacttgattataaataagtgctacatcattattcaacactcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="33265" stop="36808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33565" g_stop="33801" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33802" i_stop="34926" i_length="1125">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34927" g_stop="35150" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="461" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35151" i_stop="36018" i_length="868">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36019" g_stop="36126" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="569" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36127" i_stop="36254" i_length="128">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.188" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36255" g_stop="36508" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="823" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36509" i_stop="36685" i_length="177">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36686" g_stop="36691" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="824" r_stop="829" r_length="6" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E541196" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33565" e_stop="33801"/>
          <exon e_start="34927" e_stop="35150"/>
          <exon e_start="36019" e_stop="36126"/>
          <exon e_start="36255" e_stop="36508"/>
          <exon e_start="36686" e_stop="36691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGAAATCAAATAAGAGGTATCCTGGTGAGGCTAAGGGGTTTGTGGAGGAAATGAGGTTTGTGGCTATGAAGTTGCATACTAAGGACCAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCCAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAGAATTGTGGAAAAGGCTCCTTTTCCTGAGTGTGAGTTTTTCTTAATTTATGTGCATCTGTTAGTGTTGTAATATGTTGTTTTGTTTGGTTCATGGTATTGACAATTGAATAACTTGACTGATTGGTTCTGCTTTGGGGTGTTTTGTTTGGTTCATGGGTATTGACAATTGAACCATTTGACTGATTGGTTCAGCTGTGTGTGTGTGGTGGGGGGGGTGGGGGGGGATTAGTATGTTATACTCTTTTAACTGTGGAATTTTGAGATGAGTTTTTCAATTCTGTTGGTACCTATGCTGCTTTTTTGTCATTGATTCTTTGATATCCATTAAGGTTCTAATATATTGTTTTGTTTGGTTCATGCTATTGATAATTGAAAACGCTTGATGGATTCCTCCTTTTGTGGGAATATATTATACTCTTTAATCAGTTGAGGAGTAGTCTCTGATCCTCATTTTCTTTTGTGTAAACAGAAAGTTCCCAGTTGTATAGAAAATCATGCTTAGTAGATTCTTTACTTTTTGGTATATTACATGTATATGGCCAGTTTGACCATGTTTATGAATGAATATACTATACTTGCACTTGATCAAAAAAATAATTTACTCTTTAAACTTTGGAGATCATTGTGGAAAAGGTTTGTTGGTTTCTATTGGTATTTCTGAGCAACATGGTAGTTGATAATTGATGATTTTATTATCATCGAGTTGTGATCTTCGGTTCCCAAACAAGTAGATGTTGAAATTCATTCCATAAGCTGTAACTCAATAGTGAGCTAACAAAGACATGTAAAGGGATATGGTAGAATTTGTCTTCTGGATGATAGAGAAGCTCAGTTGTGAGAGAAGAACTGATTTGCTGATGTTGTTTTGAACCAATCAGTTGAATTTCAGCTCTAACTAATGACCCCAGGGCTGATCTGCTACGCTTCCTTTTTCTTTCCCTTTGGTTGTTTCAGCTTTATGTTTAGTAATGCTTTTTCACCAACGGAGTTCACAACATGAATAAGTTAACTTGCTTTACATACAAAGTACTTTGCTTTTCTTTTACGGCAAAGGCATGTGATCTGTGCCTTTCCAAGCACACTCTCCACATAGATGCATAAATAAATGAGTTGGTAGTAAAACAGAATCTTAGAACTCTTACATTTGACTGCAGATGCTGAGTTCAGGAATACAGGATTAGAAAGGTCTGAGGTTCTAGCAAAGGATTTGGAATGGTTTAGGCAGCAGGGTCATGCCATCCCGGAACCATCAACTCCTGGTGTCACCTATGCTAGTTACTTAGAGGAGCTATCAGAAAAGGATCCTCAAGCATTTATTTGCCATTTTTACAACACCTACTTTGCTCATTCAGCTGGAGGCCGCATGATAGGGAAAAAGGTCAGTGATCTCTTCTTTTAAGTTTTTAGTATTATTTCACATTGTTAGTCTGATACTGTGGTGTATAAAGGTAGAATTTTATCATAGAAATATGGAATGAACAAAAGCTTAGATGGTTCTAAGTCACAATTCGAAGGGTACCCTCTGATGACACCCAAAGATGTGACTTTGACACTTAGTTGGTCAATGAGGTGGGAGGAGAACCATCCATTTAAGCCTTAGTGAGCAGAGTTACCTAGTACGGTGCTAGTGAGAGGTAGCAGGTACTCAGTGTAATAGCGAGGTGCATCCGAGGCAACTCATGTGGAGATGACATTATTTTTGGTTCTCAATAAACTCAAGTCATTACACCCTTTTATTGATTCATATCTCTTCCCCTCTTTGTATTCTGTTTTCTGTTTGCCACTTGAGGTGCGTTACATAGGCCTTAAAATTTTCGTAATACCATTTTTCTCTGTTTACCATACTTCCATTCATCCACTCATTAGTACTTCAAATTTGATGGATAGTTGAAATGTTATAAGTTCCTATCTTTATCATCGCTTAGTCTCAAAATGACAAAATCAACTCAAGTCTATGATTACTGTAACAAATAAACTAAACAACGTTGTAAAGATGAAAATTTGAGCTTTCATCAGTGTTAAAAATGCTCGTCAGATGATAAATTCAGATTAGAAGAAATGTAAAAAAGGAGGCAATCCTATACTGTGGTTACGAATTCCTCTGTTAGACTAGTACTGTGGTAGAGGTTGTTGTCTCCCTATTGCATAGTTTTTGTTCCTTTCCTTCTTCCCTTCTTAGAGCTATGAATGTTTACAAGGAAAAAGGCAGTTACTTGTCGACAATCATGCTGCTTCTTCCTTTATAGGTAGCTGAAAAGGTACTTGACAAGAAAGAGCTGGAATTCTACAAATGGGACGGCGATCTTTCTCAGCTGCTGCAGAATGTTAGGGATAAGCTGAACAAAGTTGCAGAAGTAAAATCATTAGCTTTCCCTTTACAAGTTTTCAACTTTTTAAAACTATAATCATTTCTTTCACCTTACTCGTTTCCATTGATGGGGTTAACGACTTAACATGATCCATTTTCGATTCTTTTGCTCAGAACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTTTCTTGATGCACAACTTTGCGCTTTGTTTCCTCGTTTTAACTTGTACATTGGATGGTTGAAAGGTCAAATTTCTTTGAATATTTGTGTTCCTTTTCACTTTCTTTCTGTCTATGTTGTGTAAGAACTTGATTATAAATAAGTGCTACATCATTATTCAACACTCAAAAGTTGCTGCTGCTCAACTACCAAGATGTTTAAGGCCCAATTTGTTCTAATGCCAAATCATGTTATAGATCAAAAGGCTTGTTGAAAAACTTATACATCCTTTTAATTTTGTTTTTTGTTTCTCTGGTTTTGACTTGATATGAAATCTAAGAATTAAAGAAGACTTTTGAATTGCGTAGCCAAAA</genome_strand>
        <mrna_strand>CTGAGAAATCAAATAAGAGGTATCCTGGTGAGGCTAAGGGGTTTGTGAGGGAAATGAGGTTTGTGGCTATGAAGTTGCATACTAAGGACCAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCCAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAGAATTGTGGAAAAGGCTCCTTTTCCTGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGAGTTCAGGAATACAGGATTAGAAAGGTCTGAGGTTCTAGCAAAGGATTTGGAATGGTTTAGGCAGCAGGGTCATGCCATCCCGGAACCATCAACTCCTGGTGTCACCTATGCTAGTTACTTAGAGGAGCTATCAGAAAAGGATCCTCAAGCATTTATTTGCCATTTTTACAACACCTACTTTGCTCATTCAGCTGGAGGCCGCATGATAGGGAAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTGAAAAGGTACTTGACAAGAAAGAGCTGGAATTCTACAAATGGGACGGCGATCTTTCTCAGCTGCTGCAGAATGTTAGGGATAAGCTGAACAAAGTTGCAGAA................................................................................................................................AACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTTTCTTGATGCACAACTTTGCGCTTTGTTTCCTCGTTTTAACTTGTACATTGGATGGTTGAAAGGTCAAATTTCTTTGAATATTTGTGTTCCTTTTCACTTTCTTTCTGTCTATGTTGTGTAAGAACTTGATTATAAATAAGTGCTACATCATTATTCAACACTCAAAA.................................................................................................................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603124" ref_strand="+" ref_description="SGN-E603124 [56206]">
      <seq>gaaatgaggtttgtggctatgaaattgcatactaaggacctaggctaaggaaggggaaaaagagcctgtagatcagcctttggctaagtgggagcctagtgttgaagggtacttgaagttcttggtggatagcaaattggtttatgatactttggaaaaaattgtggaaaaggctccttttcctgagtatgctgagttcaggaacacaggattagaaaggtctgaggttctagcaaaggatttggaatggtttaggcagcaaggtcatgccatcccggaaccgtcaactcctggtgtcacctatgctcgttacttagaggagctatcagaaaaggatcctcaagcatttatttgccatttttacaacacctactttgctcattcagctggaggccgcatgatagggagaaaggtagctgaaaaggtactcgacaagaaagagctggaattctacaaatgggacggtgatctttctcagctgctgcagaatgttagggataagcgtgaacaaagttgcagaaaactggactagagaggagaagaatcattgtctggaagagacaggagaagtcatttcaagttctccggggccattctccgtttgatattctctggatgcacaactttgcgctttgtttaccttgttttaacttgtactcgaaaggtcaatttatgtgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="33315" stop="36697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33615" g_stop="33801" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33802" i_stop="34926" i_length="1125">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34927" g_stop="35150" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="412" r_length="224" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35151" i_stop="36018" i_length="868">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36019" g_stop="36126" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="521" r_length="109" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36127" i_stop="36254" i_length="128">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.188" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36255" g_stop="36387" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="657" r_length="136" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E603124" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33615" e_stop="33801"/>
          <exon e_start="34927" e_stop="35150"/>
          <exon e_start="36019" e_stop="36126"/>
          <exon e_start="36255" e_stop="36387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGAGGTTTGTGGCTATGAAGTTGCATACTAAGGACC-AGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCCAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAGAATTGTGGAAAAGGCTCCTTTTCCTGAGTGTGAGTTTTTCTTAATTTATGTGCATCTGTTAGTGTTGTAATATGTTGTTTTGTTTGGTTCATGGTATTGACAATTGAATAACTTGACTGATTGGTTCTGCTTTGGGGTGTTTTGTTTGGTTCATGGGTATTGACAATTGAACCATTTGACTGATTGGTTCAGCTGTGTGTGTGTGGTGGGGGGGGTGGGGGGGGATTAGTATGTTATACTCTTTTAACTGTGGAATTTTGAGATGAGTTTTTCAATTCTGTTGGTACCTATGCTGCTTTTTTGTCATTGATTCTTTGATATCCATTAAGGTTCTAATATATTGTTTTGTTTGGTTCATGCTATTGATAATTGAAAACGCTTGATGGATTCCTCCTTTTGTGGGAATATATTATACTCTTTAATCAGTTGAGGAGTAGTCTCTGATCCTCATTTTCTTTTGTGTAAACAGAAAGTTCCCAGTTGTATAGAAAATCATGCTTAGTAGATTCTTTACTTTTTGGTATATTACATGTATATGGCCAGTTTGACCATGTTTATGAATGAATATACTATACTTGCACTTGATCAAAAAAATAATTTACTCTTTAAACTTTGGAGATCATTGTGGAAAAGGTTTGTTGGTTTCTATTGGTATTTCTGAGCAACATGGTAGTTGATAATTGATGATTTTATTATCATCGAGTTGTGATCTTCGGTTCCCAAACAAGTAGATGTTGAAATTCATTCCATAAGCTGTAACTCAATAGTGAGCTAACAAAGACATGTAAAGGGATATGGTAGAATTTGTCTTCTGGATGATAGAGAAGCTCAGTTGTGAGAGAAGAACTGATTTGCTGATGTTGTTTTGAACCAATCAGTTGAATTTCAGCTCTAACTAATGACCCCAGGGCTGATCTGCTACGCTTCCTTTTTCTTTCCCTTTGGTTGTTTCAGCTTTATGTTTAGTAATGCTTTTTCACCAACGGAGTTCACAACATGAATAAGTTAACTTGCTTTACATACAAAGTACTTTGCTTTTCTTTTACGGCAAAGGCATGTGATCTGTGCCTTTCCAAGCACACTCTCCACATAGATGCATAAATAAATGAGTTGGTAGTAAAACAGAATCTTAGAACTCTTACATTTGACTGCAGATGCTGAGTTCAGGAATACAGGATTAGAAAGGTCTGAGGTTCTAGCAAAGGATTTGGAATGGTTTAGGCAGCAGGGTCATGCCATCCCGGAACCATCAACTCCTGGTGTCACCTATGCTAGTTACTTAGAGGAGCTATCAGAAAAGGATCCTCAAGCATTTATTTGCCATTTTTACAACACCTACTTTGCTCATTCAGCTGGAGGCCGCATGATAGGGAAAAAGGTCAGTGATCTCTTCTTTTAAGTTTTTAGTATTATTTCACATTGTTAGTCTGATACTGTGGTGTATAAAGGTAGAATTTTATCATAGAAATATGGAATGAACAAAAGCTTAGATGGTTCTAAGTCACAATTCGAAGGGTACCCTCTGATGACACCCAAAGATGTGACTTTGACACTTAGTTGGTCAATGAGGTGGGAGGAGAACCATCCATTTAAGCCTTAGTGAGCAGAGTTACCTAGTACGGTGCTAGTGAGAGGTAGCAGGTACTCAGTGTAATAGCGAGGTGCATCCGAGGCAACTCATGTGGAGATGACATTATTTTTGGTTCTCAATAAACTCAAGTCATTACACCCTTTTATTGATTCATATCTCTTCCCCTCTTTGTATTCTGTTTTCTGTTTGCCACTTGAGGTGCGTTACATAGGCCTTAAAATTTTCGTAATACCATTTTTCTCTGTTTACCATACTTCCATTCATCCACTCATTAGTACTTCAAATTTGATGGATAGTTGAAATGTTATAAGTTCCTATCTTTATCATCGCTTAGTCTCAAAATGACAAAATCAACTCAAGTCTATGATTACTGTAACAAATAAACTAAACAACGTTGTAAAGATGAAAATTTGAGCTTTCATCAGTGTTAAAAATGCTCGTCAGATGATAAATTCAGATTAGAAGAAATGTAAAAAAGGAGGCAATCCTATACTGTGGTTACGAATTCCTCTGTTAGACTAGTACTGTGGTAGAGGTTGTTGTCTCCCTATTGCATAGTTTTTGTTCCTTTCCTTCTTCCCTTCTTAGAGCTATGAATGTTTACAAGGAAAAAGGCAGTTACTTGTCGACAATCATGCTGCTTCTTCCTTTATAGGTAGCTGAAAAGGTACTTGACAAGAAAGAGCTGGAATTCTACAAATGGGACGGCGATCTTTCTCAGCTGCTGCAGAATGTTAGGGATAAGC-TGAACAAAGTTGCAGAAGTAAAATCATTAGCTTTCCCTTTACAAGTTTTCAACTTTTTAAAACTATAATCATTTCTTTCACCTTACTCGTTTCCATTGATGGGGTTAACGACTTAACATGATCCATTTTCGATTCTTTTGCTCAGAACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACA-GAGAAGTCA-TTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTTTCTTGATGCACAACTTTGCGCTTTGTTT-CCTCGTTTTAACTTGTAC</genome_strand>
        <mrna_strand>GAAATGAGGTTTGTGGCTATGAAATTGCATACTAAGGACCTAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCTAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAAAATTGTGGAAAAGGCTCCTTTTCCTGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGAGTTCAGGAACACAGGATTAGAAAGGTCTGAGGTTCTAGCAAAGGATTTGGAATGGTTTAGGCAGCAAGGTCATGCCATCCCGGAACCGTCAACTCCTGGTGTCACCTATGCTCGTTACTTAGAGGAGCTATCAGAAAAGGATCCTCAAGCATTTATTTGCCATTTTTACAACACCTACTTTGCTCATTCAGCTGGAGGCCGCATGATAGGGAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTGAAAAGGTACTCGACAAGAAAGAGCTGGAATTCTACAAATGGGACGGTGATCTTTCTCAGCTGCTGCAGAATGTTAGGGATAAGCGTGAACAAAGTTGCAGAA................................................................................................................................AACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGGAGAAGTCATTTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTCTCTGGATGCACAACTTTGCGCTTTGTTTACCTTGTTTTAACTTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612001" ref_strand="-" ref_description="SGN-E612001 [61759]">
      <seq>gaaatttgcatactaaaggaccaggctaaaggaaggggaaatagagcctgtagatcagcctttggctaaatgggagcgctagtgttgaagggtacttgaagttcttggtggatagcaaattggtttatgatactttggaaaaaattgtggaaaaaggctccttttcctgagtatgctgagttcaggaacacaggattagaaaggtctgaggttctagcaaaggatttggaatggtttaggcagcaaggtcatgccatcccggaaccgtcaactcctggtgtcacatatgctcgttacttagaagagctatcagaaaaggatcctcaagcatttatttgccatttttacaacacctactttgctcattcagctggaggccgcatgatagggagaaaggtagctgaaaaggtactcgacaagaaagagctggaattctacaaatgggacggtgatctttcccagctgctgcagaatgttagggataagctgaacaaagttgcagaaaactggactagagaggagaagaatcattgtctggaagagacagagaagtcattcaagttctccggggccattctccgtttgatattctcttgatgcacaactttgcgctttgtttccttgttttaacttgtactcgaaaggtcaaatttatgtgaatatttgtgtttcttttcgctttcattccgtctatggtgtataagaacttgattataattcaagtattacatcattattcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="33334" stop="36801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33634" g_stop="33801" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33802" i_stop="34926" i_length="1125">
            <donor d_prob="0.953" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34927" g_stop="35150" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="396" r_length="224" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35151" i_stop="36018" i_length="868">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36019" g_stop="36126" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="504" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36127" i_stop="36254" i_length="128">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.188" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36255" g_stop="36508" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="750" r_length="246" r_score="0.886"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36509" i_stop="36685" i_length="177">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.801" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36686" g_stop="36698" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="763" r_length="13" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E612001" ref_strand="-">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612001" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33634" e_stop="33801"/>
          <exon e_start="34927" e_stop="35150"/>
          <exon e_start="36019" e_stop="36126"/>
          <exon e_start="36255" e_stop="36508"/>
          <exon e_start="36686" e_stop="36698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTGCATACT-AAGGACCAGGCT-AAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCCAAGTGGGAGC-CTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAGAATTGTGG-AAAAGGCTCCTTTTCCTGAGTGTGAGTTTTTCTTAATTTATGTGCATCTGTTAGTGTTGTAATATGTTGTTTTGTTTGGTTCATGGTATTGACAATTGAATAACTTGACTGATTGGTTCTGCTTTGGGGTGTTTTGTTTGGTTCATGGGTATTGACAATTGAACCATTTGACTGATTGGTTCAGCTGTGTGTGTGTGGTGGGGGGGGTGGGGGGGGATTAGTATGTTATACTCTTTTAACTGTGGAATTTTGAGATGAGTTTTTCAATTCTGTTGGTACCTATGCTGCTTTTTTGTCATTGATTCTTTGATATCCATTAAGGTTCTAATATATTGTTTTGTTTGGTTCATGCTATTGATAATTGAAAACGCTTGATGGATTCCTCCTTTTGTGGGAATATATTATACTCTTTAATCAGTTGAGGAGTAGTCTCTGATCCTCATTTTCTTTTGTGTAAACAGAAAGTTCCCAGTTGTATAGAAAATCATGCTTAGTAGATTCTTTACTTTTTGGTATATTACATGTATATGGCCAGTTTGACCATGTTTATGAATGAATATACTATACTTGCACTTGATCAAAAAAATAATTTACTCTTTAAACTTTGGAGATCATTGTGGAAAAGGTTTGTTGGTTTCTATTGGTATTTCTGAGCAACATGGTAGTTGATAATTGATGATTTTATTATCATCGAGTTGTGATCTTCGGTTCCCAAACAAGTAGATGTTGAAATTCATTCCATAAGCTGTAACTCAATAGTGAGCTAACAAAGACATGTAAAGGGATATGGTAGAATTTGTCTTCTGGATGATAGAGAAGCTCAGTTGTGAGAGAAGAACTGATTTGCTGATGTTGTTTTGAACCAATCAGTTGAATTTCAGCTCTAACTAATGACCCCAGGGCTGATCTGCTACGCTTCCTTTTTCTTTCCCTTTGGTTGTTTCAGCTTTATGTTTAGTAATGCTTTTTCACCAACGGAGTTCACAACATGAATAAGTTAACTTGCTTTACATACAAAGTACTTTGCTTTTCTTTTACGGCAAAGGCATGTGATCTGTGCCTTTCCAAGCACACTCTCCACATAGATGCATAAATAAATGAGTTGGTAGTAAAACAGAATCTTAGAACTCTTACATTTGACTGCAGATGCTGAGTTCAGGAATACAGGATTAGAAAGGTCTGAGGTTCTAGCAAAGGATTTGGAATGGTTTAGGCAGCAGGGTCATGCCATCCCGGAACCATCAACTCCTGGTGTCACCTATGCTAGTTACTTAGAGGAGCTATCAGAAAAGGATCCTCAAGCATTTATTTGCCATTTTTACAACACCTACTTTGCTCATTCAGCTGGAGGCCGCATGATAGGGAAAAAGGTCAGTGATCTCTTCTTTTAAGTTTTTAGTATTATTTCACATTGTTAGTCTGATACTGTGGTGTATAAAGGTAGAATTTTATCATAGAAATATGGAATGAACAAAAGCTTAGATGGTTCTAAGTCACAATTCGAAGGGTACCCTCTGATGACACCCAAAGATGTGACTTTGACACTTAGTTGGTCAATGAGGTGGGAGGAGAACCATCCATTTAAGCCTTAGTGAGCAGAGTTACCTAGTACGGTGCTAGTGAGAGGTAGCAGGTACTCAGTGTAATAGCGAGGTGCATCCGAGGCAACTCATGTGGAGATGACATTATTTTTGGTTCTCAATAAACTCAAGTCATTACACCCTTTTATTGATTCATATCTCTTCCCCTCTTTGTATTCTGTTTTCTGTTTGCCACTTGAGGTGCGTTACATAGGCCTTAAAATTTTCGTAATACCATTTTTCTCTGTTTACCATACTTCCATTCATCCACTCATTAGTACTTCAAATTTGATGGATAGTTGAAATGTTATAAGTTCCTATCTTTATCATCGCTTAGTCTCAAAATGACAAAATCAACTCAAGTCTATGATTACTGTAACAAATAAACTAAACAACGTTGTAAAGATGAAAATTTGAGCTTTCATCAGTGTTAAAAATGCTCGTCAGATGATAAATTCAGATTAGAAGAAATGTAAAAAAGGAGGCAATCCTATACTGTGGTTACGAATTCCTCTGTTAGACTAGTACTGTGGTAGAGGTTGTTGTCTCCCTATTGCATAGTTTTTGTTCCTTTCCTTCTTCCCTTCTTAGAGCTATGAATGTTTACAAGGAAAAAGGCAGTTACTTGTCGACAATCATGCTGCTTCTTCCTTTATAGGTAGCTGAAAAGGTACTTGACAAGAAAGAGCTGGAATTCTACAAATGGGACGGCGATCTTTCTCAGCTGCTGCAGAATGTTAGGGATAAGCTGAACAAAGTTGCAGAAGTAAAATCATTAGCTTTCCCTTTACAAGTTTTCAACTTTTTAAAACTATAATCATTTCTTTCACCTTACTCGTTTCCATTGATGGGGTTAACGACTTAACATGATCCATTTTCGATTCTTTTGCTCAGAACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTTTCTTGATGCACAACTTTGCGCTTTGTTTCCTCGTTTTAACTTGTACATTGGATGGTTGAAAGGTCAAATTTCTTTGAATATTTGTGTTCCTTTTCACTTTCTTTCTGTCTATGTTGTGTAAGAACTTGATTATAAAT-AAGTGCTACATCATTATTCAACACTCAAAAGTTGCTGCTGCTCAACTACCAAGATGTTTAAGGCCCAATTTGTTCTAATGCCAAATCATGTTATAGATCAAAAGGCTTGTTGAAAAACTTATACATCCTTTTAATTTTGTTTTTTGTTTCTCTGGTTTTGACTTGATATGAAATCTAAGAATTAAAGAAGACTTTTGAATTGCGTAGCCAAAAAAAAATG</genome_strand>
        <mrna_strand>GAAATTTGCATACTAAAGGACCAGGCTAAAGGAAGGGGAAATAGAGCCTGTAGATCAGCCTTTGGCTAAATGGGAGCGCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAAAATTGTGGAAAAAGGCTCCTTTTCCTGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGAGTTCAGGAACACAGGATTAGAAAGGTCTGAGGTTCTAGCAAAGGATTTGGAATGGTTTAGGCAGCAAGGTCATGCCATCCCGGAACCGTCAACTCCTGGTGTCACATATGCTCGTTACTTAGAAGAGCTATCAGAAAAGGATCCTCAAGCATTTATTTGCCATTTTTACAACACCTACTTTGCTCATTCAGCTGGAGGCCGCATGATAGGGAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTGAAAAGGTACTCGACAAGAAAGAGCTGGAATTCTACAAATGGGACGGTGATCTTTCCCAGCTGCTGCAGAATGTTAGGGATAAGCTGAACAAAGTTGCAGAA................................................................................................................................AACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTCTCTTGATGCACAACTTTGCGCTTTGTTTCCTTGTTTTAACTTGTAC---------TCGAAAGGTCAAATTTATGTGAATATTTGTGTTTCTTTTCGCTTTCATTCCGTCTATGGTGTATAAGAACTTGATTATAATTCAAGTATTACATCATTATTCAAAAAAAAAAA.................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402332" ref_strand="-" ref_description="SGN-E402332 [PPC-7-M8]">
      <seq>atttatttgccatttttacaacccctactttgctcattcagctggagcccgcatgatagggagaaaggtagctgaaaaggtactcgccaagaaagagctggaattctacaaatgggccggtgatctttttcagctgctgcagaatgttagggataagctgaacaaagttgcagaaaactggactagagaggagaagaatcattgtttggaagagacagagaagtcattcaagttctccggggccattctccgtttgatattctcttgatgcacaactttgcgctttgtttccttgttttaacttgtactcgaaaggtcaaatttatgtgaatatttgtgtttcttttcgctttcattccgtctatggtgtataagaacttgattataattcaagtattccatcattattcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="34784" stop="36801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35084" g_stop="35150" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35151" i_stop="36018" i_length="868">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.967" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36019" g_stop="36126" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="175" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36127" i_stop="36254" i_length="128">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.188" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36255" g_stop="36508" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="421" r_length="246" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="422" polyA_stop="441"/>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E402332" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402332" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35084" e_stop="35150"/>
          <exon e_start="36019" e_stop="36126"/>
          <exon e_start="36255" e_stop="36508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTTGCCATTTTTACAACACCTACTTTGCTCATTCAGCTGGAGGCCGCATGATAGGGAAAAAGGTCAGTGATCTCTTCTTTTAAGTTTTTAGTATTATTTCACATTGTTAGTCTGATACTGTGGTGTATAAAGGTAGAATTTTATCATAGAAATATGGAATGAACAAAAGCTTAGATGGTTCTAAGTCACAATTCGAAGGGTACCCTCTGATGACACCCAAAGATGTGACTTTGACACTTAGTTGGTCAATGAGGTGGGAGGAGAACCATCCATTTAAGCCTTAGTGAGCAGAGTTACCTAGTACGGTGCTAGTGAGAGGTAGCAGGTACTCAGTGTAATAGCGAGGTGCATCCGAGGCAACTCATGTGGAGATGACATTATTTTTGGTTCTCAATAAACTCAAGTCATTACACCCTTTTATTGATTCATATCTCTTCCCCTCTTTGTATTCTGTTTTCTGTTTGCCACTTGAGGTGCGTTACATAGGCCTTAAAATTTTCGTAATACCATTTTTCTCTGTTTACCATACTTCCATTCATCCACTCATTAGTACTTCAAATTTGATGGATAGTTGAAATGTTATAAGTTCCTATCTTTATCATCGCTTAGTCTCAAAATGACAAAATCAACTCAAGTCTATGATTACTGTAACAAATAAACTAAACAACGTTGTAAAGATGAAAATTTGAGCTTTCATCAGTGTTAAAAATGCTCGTCAGATGATAAATTCAGATTAGAAGAAATGTAAAAAAGGAGGCAATCCTATACTGTGGTTACGAATTCCTCTGTTAGACTAGTACTGTGGTAGAGGTTGTTGTCTCCCTATTGCATAGTTTTTGTTCCTTTCCTTCTTCCCTTCTTAGAGCTATGAATGTTTACAAGGAAAAAGGCAGTTACTTGTCGACAATCATGCTGCTTCTTCCTTTATAGGTAGCTGAAAAGGTACTTGACAAGAAAGAGCTGGAATTCTACAAATGGGACGGCGATCTTTCTCAGCTGCTGCAGAATGTTAGGGATAAGCTGAACAAAGTTGCAGAAGTAAAATCATTAGCTTTCCCTTTACAAGTTTTCAACTTTTTAAAACTATAATCATTTCTTTCACCTTACTCGTTTCCATTGATGGGGTTAACGACTTAACATGATCCATTTTCGATTCTTTTGCTCAGAACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTTTCTTGATGCACAACTTTGCGCTTTGTTTCCTCGTTTTAACTTGTACATTGGATGGTTGAAAGGTCAAATTTCTTTGAATATTTGTGTTCCTTTTCACTTTCTTTCTGTCTATGTTGTGTAAGAACTTGATTATAAAT-AAGTGCTACATCATTATTCAACACTCAAAA</genome_strand>
        <mrna_strand>ATTTATTTGCCATTTTTACAACCCCTACTTTGCTCATTCAGCTGGAGCCCGCATGATAGGGAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTGAAAAGGTACTCGCCAAGAAAGAGCTGGAATTCTACAAATGGGCCGGTGATCTTTTTCAGCTGCTGCAGAATGTTAGGGATAAGCTGAACAAAGTTGCAGAA................................................................................................................................AACTGGACTAGAGAGGAGAAGAATCATTGTTTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTCTCTTGATGCACAACTTTGCGCTTTGTTTCCTTGTTTTAACTTGTAC---------TCGAAAGGTCAAATTTATGTGAATATTTGTGTTTCTTTTCGCTTTCATTCCGTCTATGGTGTATAAGAACTTGATTATAATTCAAGTATTCCATCATTATTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609897" ref_strand="+" ref_description="SGN-E609897 [46390]">
      <seq>ctggaattctacaaatgggacggtgatctttcccagctgctgcagaatgttagggataagctgaacaaagttgcagaaaactggactagagaggagaagaatcattgtctggaagagacagagaagtcattcaagttctccggggccattctccgtttgatattctcttgatgcacaactttgcgctttgtttccttgttttaacttgtactcgaaaggtcaaatttatgtgaatatttgtgtttcttttcgctttcattccgtctatggtgtataagaacttgattataattcaagtattacatcattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="35749" stop="36794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36049" g_stop="36126" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36127" i_stop="36254" i_length="128">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.188" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36255" g_stop="36493" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="309" r_length="231" r_score="0.895"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36494" i_stop="36685" i_length="192">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.801" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36686" g_stop="36702" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="326" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E609897" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36049" e_stop="36126"/>
          <exon e_start="36255" e_stop="36493"/>
          <exon e_start="36686" e_stop="36702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAATTCTACAAATGGGACGGCGATCTTTCTCAGCTGCTGCAGAATGTTAGGGATAAGCTGAACAAAGTTGCAGAAGTAAAATCATTAGCTTTCCCTTTACAAGTTTTCAACTTTTTAAAACTATAATCATTTCTTTCACCTTACTCGTTTCCATTGATGGGGTTAACGACTTAACATGATCCATTTTCGATTCTTTTGCTCAGAACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTTTCTTGATGCACAACTTTGCGCTTTGTTTCCTCGTTTTAACTTGTACATTGGATGGTTGAAAGGTCAAATTTCTTTGAATATTTGTGTTCCTTTTCACTTTCTTTCTGTCTATGTTGTGTAAGAACTTGATTATAAAT-AAGTGCTACATCATTATTCAACACTCAAAAGTTGCTGCTGCTCAACTACCAAGATGTTTAAGGCCCAATTTGTTCTAATGCCAAATCATGTTATAGATCAAAAGGCTTGTTGAAAAACTTATACATCCTTTTAATTTTGTTTTTTGTTTCTCTGGTTTTGACTTGATATGAAATCTAAGAATTAAAGAAGACTTTTGAATTGCGTAGCCAAAAAAAAATGCAAA</genome_strand>
        <mrna_strand>CTGGAATTCTACAAATGGGACGGTGATCTTTCCCAGCTGCTGCAGAATGTTAGGGATAAGCTGAACAAAGTTGCAGAA................................................................................................................................AACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTCTCTTGATGCACAACTTTGCGCTTTGTTTCCTTGTTTTAACTTGTAC---------TCGAAAGGTCAAATTTATGTGAATATTTGTGTTTCTTTTCGCTTTCATTCCGTCTATGGTGTATAAGAACTTGATTATAATTCAAGTATTACATCATT................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545055" ref_strand="+" ref_description="SGN-E545055 [TUS-67-L8](-)">
      <seq>gatctttctcagctgctgcagaatgttagggataagctgaacaaagttgcagaaaactggactagagaggagaagaatcattgtctggaagagacagagaagtcattcaagttctccggggccattctccgtttgatattttcttgatgcacaactttgcgctttgtttcctcgttttaacttgtacattggatggttgaaaggtcaaatttctttgaatatttgtgttccttttcactttctttctgtctatgttgtgtaagaacttgattataaataagtgctacatcattattcaacaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="35773" stop="36801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36073" g_stop="36126" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36127" i_stop="36254" i_length="128">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.188" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36255" g_stop="36498" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="298" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36499" i_stop="36685" i_length="187">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36686" g_stop="36702" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="314" r_length="16" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E545055" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36073" e_stop="36126"/>
          <exon e_start="36255" e_stop="36498"/>
          <exon e_start="36686" e_stop="36702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTTCTCAGCTGCTGCAGAATGTTAGGGATAAGCTGAACAAAGTTGCAGAAGTAAAATCATTAGCTTTCCCTTTACAAGTTTTCAACTTTTTAAAACTATAATCATTTCTTTCACCTTACTCGTTTCCATTGATGGGGTTAACGACTTAACATGATCCATTTTCGATTCTTTTGCTCAGAACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTTTCTTGATGCACAACTTTGCGCTTTGTTTCCTCGTTTTAACTTGTACATTGGATGGTTGAAAGGTCAAATTTCTTTGAATATTTGTGTTCCTTTTCACTTTCTTTCTGTCTATGTTGTGTAAGAACTTGATTATAAATAAGTGCTACATCATTATTCAACACTCAAAAGTTGCTGCTGCTCAACTACCAAGATGTTTAAGGCCCAATTTGTTCTAATGCCAAATCATGTTATAGATCAAAAGGCTTGTTGAAAAACTTATACATCCTTTTAATTTTGTTTTTTGTTTCTCTGGTTTTGACTTGATATGAAATCTAAGAATTAAAGAAGACTTTTGAATTGCGTAGCCAAAAAAAAATGCAAA</genome_strand>
        <mrna_strand>GATCTTTCTCAGCTGCTGCAGAATGTTAGGGATAAGCTGAACAAAGTTGCAGAA................................................................................................................................AACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTTTCTTGATGCACAACTTTGCGCTTTGTTTCCTCGTTTTAACTTGTACATTGGATGGTTGAAAGGTCAAATTTCTTTGAATATTTGTGTTCCTTTTCACTTTCTTTCTGTCTATGTTGTGTAAGAACTTGATTATAAATAAGTGCTACATCATTATTCA...........................................................................................................................................................................................ACAAAAAAAAA-GAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545056" ref_strand="+" ref_description="SGN-E545056 [TUS-67-L8]">
      <seq>gatctttctcagctgctgcagaatgttagggataagctgaacaaagttgcagaaaactggactagagaggagaagaatcattgtctggaagagacagagaagtcattcaagttctccggggccattctccgtttgatattttcttgatgcacaactttgcgctttgtttcctcgttttaacttgtacattggatggttgaaaggtcaaatttctttgaatatttgtgttccttttcactttctttctgtctatgttgtgtaagaacttgattataaataagtgctacatcattattcaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="35773" stop="36801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36073" g_stop="36126" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36127" i_stop="36254" i_length="128">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.188" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36255" g_stop="36508" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="308" r_length="254" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36509" i_stop="36685" i_length="177">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.801" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36686" g_stop="36691" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="314" r_length="6" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E545056" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36073" e_stop="36126"/>
          <exon e_start="36255" e_stop="36508"/>
          <exon e_start="36686" e_stop="36691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTTCTCAGCTGCTGCAGAATGTTAGGGATAAGCTGAACAAAGTTGCAGAAGTAAAATCATTAGCTTTCCCTTTACAAGTTTTCAACTTTTTAAAACTATAATCATTTCTTTCACCTTACTCGTTTCCATTGATGGGGTTAACGACTTAACATGATCCATTTTCGATTCTTTTGCTCAGAACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTTTCTTGATGCACAACTTTGCGCTTTGTTTCCTCGTTTTAACTTGTACATTGGATGGTTGAAAGGTCAAATTTCTTTGAATATTTGTGTTCCTTTTCACTTTCTTTCTGTCTATGTTGTGTAAGAACTTGATTATAAATAAGTGCTACATCATTATTCAACACTCAAAAGTTGCTGCTGCTCAACTACCAAGATGTTTAAGGCCCAATTTGTTCTAATGCCAAATCATGTTATAGATCAAAAGGCTTGTTGAAAAACTTATACATCCTTTTAATTTTGTTTTTTGTTTCTCTGGTTTTGACTTGATATGAAATCTAAGAATTAAAGAAGACTTTTGAATTGCGTAGCCAAAA</genome_strand>
        <mrna_strand>GATCTTTCTCAGCTGCTGCAGAATGTTAGGGATAAGCTGAACAAAGTTGCAGAA................................................................................................................................AACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTTTCTTGATGCACAACTTTGCGCTTTGTTTCCTCGTTTTAACTTGTACATTGGATGGTTGAAAGGTCAAATTTCTTTGAATATTTGTGTTCCTTTTCACTTTCTTTCTGTCTATGTTGTGTAAGAACTTGATTATAAATAAGTGCTACATCATTATTCAACAAAAAAAA.................................................................................................................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308432" ref_strand="+" ref_description="SGN-E308432 [cLEY-25-L6]">
      <seq>atctatgtcatctgctgcagaatgttagggataagctgcaacagagttgcagaaaactggactagagaggccaagaatcattgtctggaagagacagagaagtcattcaagttctgcggggccattctccgtttgatattttcttgatgcacaactttgcgctttgtttcctcattttaacttgtacattggatggttgaaaggtcaaatttctttgaatatttgtgtcccttttcactttctttctgtctatggcgggtaagaacttgattataaataagggctacatcattgttcatcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="35774" stop="36808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36074" g_stop="36126" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36127" i_stop="36254" i_length="128">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.188" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36255" g_stop="36508" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="307" r_length="253" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36509" i_stop="36685" i_length="177">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.801" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36686" g_stop="36692" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="314" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-E308432" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36074" e_stop="36126"/>
          <exon e_start="36255" e_stop="36508"/>
          <exon e_start="36686" e_stop="36692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTCAGCTGCTGCAGAATGTTAGGGATAAGCTG-AACAAAGTTGCAGAAGTAAAATCATTAGCTTTCCCTTTACAAGTTTTCAACTTTTTAAAACTATAATCATTTCTTTCACCTTACTCGTTTCCATTGATGGGGTTAACGACTTAACATGATCCATTTTCGATTCTTTTGCTCAGAACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTTTCTTGATGCACAACTTTGCGCTTTGTTTCCTCGTTTTAACTTGTACATTGGATGGTTGAAAGGTCAAATTTCTTTGAATATTTGTGTTCCTTTTCACTTTCTTTCTGTCTATGTTGTGTAAGAACTTGATTATAAATAAGTGCTACATCATTATTCAACACTCAAAAGTTGCTGCTGCTCAACTACCAAGATGTTTAAGGCCCAATTTGTTCTAATGCCAAATCATGTTATAGATCAAAAGGCTTGTTGAAAAACTTATACATCCTTTTAATTTTGTTTTTTGTTTCTCTGGTTTTGACTTGATATGAAATCTAAGAATTAAAGAAGACTTTTGAATTGCGTAGCCAAAAA</genome_strand>
        <mrna_strand>ATCTATGTCATCTGCTGCAGAATGTTAGGGATAAGCTGCAACAGAGTTGCAGAA................................................................................................................................AACTGGACTAGAGAGGCCAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTGCGGGGCCATTCTCCGTTTGATATTTTCTTGATGCACAACTTTGCGCTTTGTTTCCTCATTTTAACTTGTACATTGGATGGTTGAAAGGTCAAATTTCTTTGAATATTTGTGTCCCTTTTCACTTTCTTTCTGTCTATGGCGGGTAAGAACTTGATTATAAATAAGGGCTACATCATTGTTCATCA-TAAAAA.................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347064" ref_strand="+" ref_description="SGN-E347064 [cTOF-25-N19]">
      <seq>aaggcgctggggttaactccgtcgatcatttcaacggacggtttaaagccggtggactatgttggctgtgcagaggtaagaaagatatattgtgtggtgattgcaatggtgctggatttcttggtggatttatgagtacgttcgatgagtagacttcagatgcactggtctcgagtagactcggaggcaggtagaggcaggttcagaggcagatccggaatttaaacttgatgagttcagtttctataattctccgtattgaagtcattgtacttgtgaaattatgatttcataatttgatatttgttcaaactttaccttccctgtcacatatatttattcatgattcgtgtaaaaagtactgagttcagttgaacctgtagccattgacgccgagaaaagcacaagggcttcattttgagaacaagcacatgtaaagactatttgtataaccaaatatgcacctaaaaatgtcatatcagccatggatgagagttnaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="48449" stop="47227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48149" g_stop="48077" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47963" g_stop="47537" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="500" r_length="427" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="501" polyA_stop="526"/>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E347064" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48149" e_stop="48077"/>
          <exon e_start="47963" e_stop="47537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTACCTTCCCTGTCACATATATTTATTCATGATTCGTGTAAAAAGTACTGAGTTCAGTTGAACCTGTAGCCATTGACGCCGAGAAAAGCACAAGGGCTTCATTTTGAGAACAAGCACATGTAAAGACTATTTGTATAACCAAATATGCACCTAAAAATGTCATATCAGCCATGGATGAGAGTTAAA</genome_strand>
        <mrna_strand>AAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTACCTTCCCTGTCACATATATTTATTCATGATTCGTGTAAAAAGTACTGAGTTCAGTTGAACCTGTAGCCATTGACGCCGAGAAAAGCACAAGGGCTTCATTTTGAGAACAAGCACATGTAAAGACTATTTGTATAACCAAATATGCACCTAAAAATGTCATATCAGCCATGGATGAGAGTTNAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280407" ref_strand="-" ref_description="SGN-E280407 [cLER-1-N13]">
      <seq>aattgttaacagcatccaccaaaggatcagcaaagaaatggtgcagtggcgtgctcacaatgtaaaggcgctggggttaactccgtcgatcatttcaacggacggtttaaagccggtggactatgttggctgtgcagaggtaagaaagatatattgtgtggtgattgcaatggtgctggatttcttggtggatttatgagtacgttcgatgagtagacttcagatgcactggtctcgagtagactcggaggcaggtagaggcaggttcagaggcagatccggaatttaaacttgatgagttcagtttctataattctccgtattgaagtcattgtacttgtgaaattatgatttcataatttgatatttgttcaaactttaccttccctgtcacatatatttattcatgattcgtgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="48474" stop="47379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="137" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47963" g_stop="47671" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="430" r_length="293" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E280407" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280407" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTACCTTCCCTGTCACATATATTTATTCATGATTCGTGTAAAAAGTACTGAG</genome_strand>
        <mrna_strand>GTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTACCTTCCCTGTCACATATATTTATTCATGATTCGTGTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734942" ref_strand="+" ref_description="SGN-E734942 [LB14AA08]">
      <seq>gtctgtcaaaagtgtgatggaaatggtgcagtggcgtgctcacaatgtaaaggcgctggggttaactccgtcgatcatttcaacggacggtttaaagccggtggactatgttggctgtgcagaggtaagaaagatatattgtgtggtgattgcaatggtgctggatttcttggtggatttatgagtacgttcgatgagtagacttcagatgcactggtctcgagtagactcggaggcaggtagaggcaggttcagaggcagatccggaatttaaacttgatgagttcagtttctataattctccgtattgaagtcattgtacttgtgaaattatgatttcataatttgatatttgttcaaactttaccttccctgtcacatatatttattcatgattcgtgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="49217" stop="47379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48917" g_stop="48893" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719">
            <donor d_prob="0.868" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="122" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47963" g_stop="47673" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="413" r_length="291" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E734942" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48917" e_stop="48893"/>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCAATGAATTCTCATGAGGGGAGCGGTATATTCCGGAGATTAATTTTTGACTAGATCTTAGTGAGACAACTGTTACATGTTAATCAACATAGTGTTTCTTTTGCTTGGATTTCTTTACTTAAAATGATTATATGCATCAAGTAGTAGTAGTTTTCCTTTTGATGTAGACCGCTTAATCGGAGTACACATCTTTTACAAACTTATCTCAAAAATTATTCATCAAAGTTATGTGAAAATTACGGTGTGTCTGAGTGAAAAGTGTCTAGTTCCAATACTTCTGCTAATGCTGCAGTCTTACTGGTTCTTCACCATGGTGTTACATGCTTATATTTGCTATTACAGTTCTTTTTCTTGCTTATACTCGTTATAATACCAAATTTCCGACTCATCAGAAGTAGATATCCATTCATAATGCTTACATAGACCTGAAATAATCCAATTTCAACTTGGATTTAGTTCACAATGTTCTGTTTCTTATACACTGTATCGCTCTCAGGTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTACCTTCCCTGTCACATATATTTATTCATGATTCGTGTAAAAAGTACTG</genome_strand>
        <mrna_strand>GTCTGTCAAAAGTGTGATGGAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTACCTTCCCTGTCACATATATTTATTCATGATTCGTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732328" ref_strand="+" ref_description="SGN-E732328 [LB01DE06]">
      <seq>cgtttttgttaaaaccaacacaattttggcaaattttctctgattaaattcaaaaaaaaataagtgaaattcaactgttttaatggcaaattctctgtgtttcacccctatagcttcattgaactctttcaataaaccaggtttaattaatcgaaatgggaattgcgctggaagaaagattcaattgatcaaagatgtaaccttcaactccaagagtaacttaagagtcgtagaagtgaaggccgctgacagtgataaagaaacaaaagtaaagagcatagtctgtcaaaagtgtgatggaaatggtgcagtggcgtgctcacaatgtaaaggcgctggggttaactccgtcgatcatttcaacggacggtttaaagccggtggactatgttggctgtgcagaggtaagaaagatatattgtgtggtgattgcaatggtgctggatttcttggtggatttatgagtacgttcgatgagtagacttcagatgcactggtctcgagtagactcggaggcaggtagaggcaggttcagaggcagatccggaatttaaacttgatgagttcagtttctataattctccgtattgaagtcattgtacttgtgaaattatgatttcataatttgatatttgttcaaactttaccttccctgtcacatatatttattcatgattcgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51112" stop="47384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50813" g_stop="50674" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49394" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="241" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48956" g_stop="48893" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="305" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="402" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47963" g_stop="47684" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="682" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E732328" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50813" e_stop="50674"/>
          <exon e_start="49494" e_stop="49394"/>
          <exon e_start="48956" e_stop="48893"/>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTGTTAAAACCAACACAATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGTAATATTGGACTTCCATGCATAGATATTAGTGCAAAATAACAATTAAATGTGCTCAATCAATAAGCAATGGCTACATCCAAGTAAAGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCAATGAATTCTCATGAGGGGAGCGGTATATTCCGGAGATTAATTTTTGACTAGATCTTAGTGAGACAACTGTTACATGTTAATCAACATAGTGTTTCTTTTGCTTGGATTTCTTTACTTAAAATGATTATATGCATCAAGTAGTAGTAGTTTTCCTTTTGATGTAGACCGCTTAATCGGAGTACACATCTTTTACAAACTTATCTCAAAAATTATTCATCAAAGTTATGTGAAAATTACGGTGTGTCTGAGTGAAAAGTGTCTAGTTCCAATACTTCTGCTAATGCTGCAGTCTTACTGGTTCTTCACCATGGTGTTACATGCTTATATTTGCTATTACAGTTCTTTTTCTTGCTTATACTCGTTATAATACCAAATTTCCGACTCATCAGAAGTAGATATCCATTCATAATGCTTACATAGACCTGAAATAATCCAATTTCAACTTGGATTTAGTTCACAATGTTCTGTTTCTTATACACTGTATCGCTCTCAGGTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTACCTTCCCTGTCACATATATTTATTCATGATTCGTGT</genome_strand>
        <mrna_strand>CGTTTTTGTTAAAACCAACACAATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTACCTTCCCTGTCACATATATTTATTCATGATTCGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617112" ref_strand="-" ref_description="SGN-E617112 [90586]">
      <seq>aaaagaagtgaaattcaactgtcttaatggctaattctctgtgtttcacccctttagcttcattgaacactttcaataaaccaggtttaattaatggaaatgggaattgcgctggaagaaagattcaattgatcaaagatgttaccttcaactccaagagtaacttaagagtcgtagaagtgaaggccgctgacagtgataaagaaacaaaagtaaggagcatagtctgtcaaaagtgtgagggaaatggtgcagtggcgtgctcacaatgtaaaggcgttggggttaactccgtcgatcatttcaacggacggtttaaagcaggttgaatattttggcttttgcaagaagttaaaaaagatatattatgtggtgactgcaatggagctggatttcttggtggatttatgagtacgttcgatgagtagacttcagatgcactagtctcgagtagactcgggaggcaggtagaggcaggttcagaggcagatccagaatttaaacttgatgagttcagtttctaaaattctcagtattgaactcattgtacttttgatattatgatttcataatttgatatttgttaaaactttaccttctcttttcacatatatttattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51057" stop="47392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50757" g_stop="50674" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49394" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="185" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48956" g_stop="48893" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="249" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719">
            <donor d_prob="0.868" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="348" r_length="99" r_score="0.897"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="0.81"/>
            <acceptor a_prob="0.993" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47963" g_stop="47692" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="623" r_length="275" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E617112" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617112" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50757" e_stop="50674"/>
          <exon e_start="49494" e_stop="49394"/>
          <exon e_start="48956" e_stop="48893"/>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGTAATATTGGACTTCCATGCATAGATATTAGTGCAAAATAACAATTAAATGTGCTCAATCAATAAGCAATGGCTACATCCAAGTAAAGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCAATGAATTCTCATGAGGGGAGCGGTATATTCCGGAGATTAATTTTTGACTAGATCTTAGTGAGACAACTGTTACATGTTAATCAACATAGTGTTTCTTTTGCTTGGATTTCTTTACTTAAAATGATTATATGCATCAAGTAGTAGTAGTTTTCCTTTTGATGTAGACCGCTTAATCGGAGTACACATCTTTTACAAACTTATCTCAAAAATTATTCATCAAAGTTATGTGAAAATTACGGTGTGTCTGAGTGAAAAGTGTCTAGTTCCAATACTTCTGCTAATGCTGCAGTCTTACTGGTTCTTCACCATGGTGTTACATGCTTATATTTGCTATTACAGTTCTTTTTCTTGCTTATACTCGTTATAATACCAAATTTCCGACTCATCAGAAGTAGATATCCATTCATAATGCTTACATAGACCTGAAATAATCCAATTTCAACTTGGATTTAGTTCACAATGTTCTGTTTCTTATACACTGTATCGCTCTCAGGTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGC-TGTGCA-GGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGA-GGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTC-GGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTACCTTC-CCTGTCACATATATTTATTCATG</genome_strand>
        <mrna_strand>AAAAGAAGTGAAATTCAACTGTCTTAATGGCTAATTCTCTGTGTTTCACCCCTTTAGCTTCATTGAACACTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATGGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTTACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGACAGTGATAAAGAAACAAAAGTAAGGAGCATAGTCTGTCAAAAGTGTGAGGGAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGGCGTGCTCACAATGTAAAGGCGTTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCAGGTTGAATATTTTGGCTTTTGCAAG.................................................................................................................AAGTTAAAAAAGATATATTATGTGGTGACTGCAATGGAGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTAGTCTCGAGTAGACTCGGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCAGAATTTAAACTTGATGAGTTCAGTTTCTAAAATTCTCAGTATTGAACTCATTGTACTTTTGATATTATGATTTCATAATTTGATATTTGTTAAAACTTTACCTTCTCTTTTCACATATATTTATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459295" ref_strand="+" ref_description="SGN-E459295 [cPRO-27-M10]">
      <seq>ggcaaactctctgattaaattcaaaaaaaagaagtgaaattcaactgtcttaatggctaattctctgtgtttcacccctttagcttcattgaacactttcaataaaccaggtttaattaatggaaatgggaattgcgctggaagaaagattcaattgatcaaagatgttaccttcaactccaagagtaacttaagagtcgtagaagtgaaggccgctgacagtgataaagaaacaaaagtaaggagcatagtctgtcaaaagtgtgagggaaatggtgcagtggcgtgctcacaatgtaaaggcgttggggttaactccgtcgatcatttcaacggacggtttaaagcaggtggactatgttggctgtgcagaggtaaaaaagatatattatgtggtgactgcaatggagctggatttcttggtggatttatgagtacgttcgatgagtagacttcagatgcactagtctcgagtagactcgggaggcaggtagaggcaggttcagaggcagatccagaatttaaacttgatgagttcagtttctaaaattctcagtattgaactcattgtacttttgatattatgatttcataatttgatatttgttnaaactttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51077" stop="47420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50786" g_stop="50674" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49394" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="211" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48956" g_stop="48893" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="275" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719">
            <donor d_prob="0.868" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="372" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47963" g_stop="47712" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="625" r_length="253" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E459295" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50786" e_stop="50674"/>
          <exon e_start="49494" e_stop="49394"/>
          <exon e_start="48956" e_stop="48893"/>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGTAATATTGGACTTCCATGCATAGATATTAGTGCAAAATAACAATTAAATGTGCTCAATCAATAAGCAATGGCTACATCCAAGTAAAGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCAATGAATTCTCATGAGGGGAGCGGTATATTCCGGAGATTAATTTTTGACTAGATCTTAGTGAGACAACTGTTACATGTTAATCAACATAGTGTTTCTTTTGCTTGGATTTCTTTACTTAAAATGATTATATGCATCAAGTAGTAGTAGTTTTCCTTTTGATGTAGACCGCTTAATCGGAGTACACATCTTTTACAAACTTATCTCAAAAATTATTCATCAAAGTTATGTGAAAATTACGGTGTGTCTGAGTGAAAAGTGTCTAGTTCCAATACTTCTGCTAATGCTGCAGTCTTACTGGTTCTTCACCATGGTGTTACATGCTTATATTTGCTATTACAGTTCTTTTTCTTGCTTATACTCGTTATAATACCAAATTTCCGACTCATCAGAAGTAGATATCCATTCATAATGCTTACATAGACCTGAAATAATCCAATTTCAACTTGGATTTAGTTCACAATGTTCTGTTTCTTATACACTGTATCGCTCTCAGGTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTC-GGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTACCTTCCCT</genome_strand>
        <mrna_strand>GGCAAA--CTCTCTGATTAAATTCAAAAAA-AAGAAGTGAAATTCAACTGTCTTAATGGCTAATTCTCTGTGTTTCACCCCTTTAGCTTCATTGAACACTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATGGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTTACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGACAGTGATAAAGAAACAAAAGTAAGGAGCATAGTCTGTCAAAAGTGTGAGGGAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGGCGTGCTCACAATGTAAAGGCGTTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCAGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAAAAAGATATATTATGTGGTGACTGCAATGGAGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTAGTCTCGAGTAGACTCGGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCAGAATTTAAACTTGATGAGTTCAGTTTCTAAAATTCTCAGTATTGAACTCATTGTACTTTTGATATTATGATTTCATAATTTGATATTTGTTNAAACTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732239" ref_strand="+" ref_description="SGN-E732239 [LB01CE12]">
      <seq>ccgtttaattcaactgttttaatggcaaattctctgtgtttcacccctatagcttcattgaactctttcaataaaccaggtttaattaatcgaaatgggaattgcgctggaagaaagattcaattgatcaaagatgtaaccttcaactccaagagtaacttaagagtcgtagaagtgaaggccgctgacagtgataaagaaacaaaagtaaagagcatagtctgtcaaaagtgtgatggaaatggtgcagtggcgtgctcacaatgtaaaggcgctggggttaactccgtcgatcatttcaacggacggtttaaagccggtggactatgttggctgtgcagaggtaagaaagatatattgtgtggtgattgcaatggtgctggatttcttggtggatttatgagtacgttcgatgagtagacttcagatgcactggtctcgagtagactcggaggcaggtagaggcaggttcagaggcagatccggaatttaaacttgatgagttcagtttctataattctccgtattgaagtcattgtacttgtgaaattatgatttcataatttgatatttgttcaaactttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51050" stop="47420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50752" g_stop="50674" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49394" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="180" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48956" g_stop="48893" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="244" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="341" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47963" g_stop="47720" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="585" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="603"/>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E732239" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50752" e_stop="50674"/>
          <exon e_start="49494" e_stop="49394"/>
          <exon e_start="48956" e_stop="48893"/>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGTAATATTGGACTTCCATGCATAGATATTAGTGCAAAATAACAATTAAATGTGCTCAATCAATAAGCAATGGCTACATCCAAGTAAAGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCAATGAATTCTCATGAGGGGAGCGGTATATTCCGGAGATTAATTTTTGACTAGATCTTAGTGAGACAACTGTTACATGTTAATCAACATAGTGTTTCTTTTGCTTGGATTTCTTTACTTAAAATGATTATATGCATCAAGTAGTAGTAGTTTTCCTTTTGATGTAGACCGCTTAATCGGAGTACACATCTTTTACAAACTTATCTCAAAAATTATTCATCAAAGTTATGTGAAAATTACGGTGTGTCTGAGTGAAAAGTGTCTAGTTCCAATACTTCTGCTAATGCTGCAGTCTTACTGGTTCTTCACCATGGTGTTACATGCTTATATTTGCTATTACAGTTCTTTTTCTTGCTTATACTCGTTATAATACCAAATTTCCGACTCATCAGAAGTAGATATCCATTCATAATGCTTACATAGACCTGAAATAATCCAATTTCAACTTGGATTTAGTTCACAATGTTCTGTTTCTTATACACTGTATCGCTCTCAGGTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTA</genome_strand>
        <mrna_strand>CCGTTTAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436051" ref_strand="-" ref_description="SGN-E436051 [STM-62-O6]">
      <seq>aaaatcactaaaattttaaatatatgtggtagcatctgcatcatattatattcataactctatttatgtgaaacgggatcaagcagcataattccaatcctaatgagaatctctttgccgtttctcatttcttataaatgaatagggaagtccgtaaagatggaaattctaagcttaatgttatctgttatcacaagggcttacttgagttctatagaaacttcagtttgctccagaaatttcctttcacctcttttatgatctaactataccatatttgcttctctttccttgagttgtctttatcttgccagagcttaacactgaactcttttttctaggccgctgacagtgataaagaaacaaaagtaaggagcatagtctgtcaaaagtgtgagggaaatggtgcagtggcgtgctcacaatgtaaaggcgttggggttaactccgtcgatcatttcaacggacggtttaaagcaggtggactatgttggctgtgcagaggtaaaaaagatatattatgtggtgactgcaatggagctggatttcttggtggatttatgagtacgttcgatgagtagacttcagatgcactagtctcgagtagactcgggaggcaggtagaggcaggttcagaggcagatccagaatttaaacttgatgagttcagtttctaaaattctcagtattgaactcattgtacttttgatattatgatttcataatttgatatttgttaaaactttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="49609" stop="47420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49307" g_stop="48893" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719">
            <donor d_prob="0.868" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="502" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47963" g_stop="47720" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="747" r_length="245" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="748" polyA_stop="758"/>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E436051" ref_strand="-">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436051" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49307" e_stop="48893"/>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCAATGAATTCTCATGAGGGGAGCGGTATATTCCGGAGATTAATTTTTGACTAGATCTTAGTGAGACAACTGTTACATGTTAATCAACATAGTGTTTCTTTTGCTTGGATTTCTTTACTTAAAATGATTATATGCATCAAGTAGTAGTAGTTTTCCTTTTGATGTAGACCGCTTAATCGGAGTACACATCTTTTACAAACTTATCTCAAAAATTATTCATCAAAGTTATGTGAAAATTACGGTGTGTCTGAGTGAAAAGTGTCTAGTTCCAATACTTCTGCTAATGCTGCAGTCTTACTGGTTCTTCACCATGGTGTTACATGCTTATATTTGCTATTACAGTTCTTTTTCTTGCTTATACTCGTTATAATACCAAATTTCCGACTCATCAGAAGTAGATATCCATTCATAATGCTTACATAGACCTGAAATAATCCAATTTCAACTTGGATTTAGTTCACAATGTTCTGTTTCTTATACACTGTATCGCTCTCAGGTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTC-GGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTA</genome_strand>
        <mrna_strand>AAAATCACTAAAATTTTAAAT-ATATGTGGTAGCATCTGCATC-AT-AT--TAT--A-TTCATAACTCTA-TTTATGTGAAACGGGATCAAGCAGCATAATTCCAATCCTAATGAGAATCTCTTTGCCGTTTCTCATTTCTTATAAAT-GAATAGGGAAGTCCGTAAAGATGGAAATTCTAAGCTTAATGTTATCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCCTTTCACCTCTTTTATGATCTAACTATACCATATTTGCTTCTCTTTCCTTGAGTTGTCTTTATCTTGCCAGAGCTTAACACTGAACTCTTTTTTCTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAGGAGCATAGTCTGTCAAAAGTGTGAGGGAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGGCGTGCTCACAATGTAAAGGCGTTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCAGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAAAAAGATATATTATGTGGTGACTGCAATGGAGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTAGTCTCGAGTAGACTCGGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCAGAATTTAAACTTGATGAGTTCAGTTTCTAAAATTCTCAGTATTGAACTCATTGTACTTTTGATATTATGATTTCATAATTTGATATTTGTTAAAACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613981" ref_strand="+" ref_description="SGN-E613981 [63762]">
      <seq>tggcgtgctcacaatgtaaaggcgttggggttaactccgttgatcatttcaacgggcggtttaaagccggtggactgtgttggctatgcagaggtaaaaaagatatattgtgtggcgactgcaatggagctggatttcttggtggatttatgagtacgttcgatgagtagacttcagatgcactggtcttgagtagactcgggaggcaggtagaggcaggtttcagaggcagatccagaatttaaacttgatgagttcagtttctaaaattctcagtattgaactcattgtacttttgatattatgatttcataatttgatatttgtttaaactttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="48467" stop="47420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48167" g_stop="48077" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47963" g_stop="47720" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="337" r_length="246" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E613981" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48167" e_stop="48077"/>
          <exon e_start="47963" e_stop="47720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTC-GGAGGCAGGTAGAGGCAGG-TTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTA</genome_strand>
        <mrna_strand>TGGCGTGCTCACAATGTAAAGGCGTTGGGGTTAACTCCGTTGATCATTTCAACGGGCGGTTTAAAGCCGGTGGACTGTGTTGGCTATGCAG.................................................................................................................AGGTAAAAAAGATATATTGTGTGGCGACTGCAATGGAGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTTGAGTAGACTCGGGAGGCAGGTAGAGGCAGGTTTCAGAGGCAGATCCAGAATTTAAACTTGATGAGTTCAGTTTCTAAAATTCTCAGTATTGAACTCATTGTACTTTTGATATTATGATTTCATAATTTGATATTTGTTTAAACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233865" ref_strand="+" ref_description="SGN-E233865 [cLEL-8-I6](-)">
      <seq>agtcgtagaagtgaaggccgctgacagtgataaagaaacaaaagtaaagagcatagtctgtcaaaagtgtgatggaaatggtgcagtggcgtgctcacaatgtaaaggcgctggggttaactccgtcgatcatttcaacggacggtttaaagccggtggactatgttggctgtgcagaggtaagaaagatatattgtgtggtgattgcaatggtgctggatttcttggtggatttatgagtacgttcgatgagtagacttcagatgcactggtcacgagtagactcggaggcaggtagaggcaggttcagaggcagatccggaatttaaacttgatgagttcagtttctataattctccgtattgaagtcattgtacttgtgaaattatgatttcataatttgatntttgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="49258" stop="47425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48956" g_stop="48893" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="80" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="177" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47963" g_stop="47732" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="409" r_length="232" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="412" polyA_stop="430"/>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E233865" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48956" e_stop="48893"/>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCAATGAATTCTCATGAGGGGAGCGGTATATTCCGGAGATTAATTTTTGACTAGATCTTAGTGAGACAACTGTTACATGTTAATCAACATAGTGTTTCTTTTGCTTGGATTTCTTTACTTAAAATGATTATATGCATCAAGTAGTAGTAGTTTTCCTTTTGATGTAGACCGCTTAATCGGAGTACACATCTTTTACAAACTTATCTCAAAAATTATTCATCAAAGTTATGTGAAAATTACGGTGTGTCTGAGTGAAAAGTGTCTAGTTCCAATACTTCTGCTAATGCTGCAGTCTTACTGGTTCTTCACCATGGTGTTACATGCTTATATTTGCTATTACAGTTCTTTTTCTTGCTTATACTCGTTATAATACCAAATTTCCGACTCATCAGAAGTAGATATCCATTCATAATGCTTACATAGACCTGAAATAATCCAATTTCAACTTGGATTTAGTTCACAATGTTCTGTTTCTTATACACTGTATCGCTCTCAGGTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTT</genome_strand>
        <mrna_strand>GCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCACGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATNTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466891" ref_strand="+" ref_description="SGN-E466891 [cPRO-26-M4]">
      <seq>ggcaaactctctgattaaattcaaaaaaaagaagtgaaattcaactgtcttaatggctaattctctgtgtttcacccctttagcttcattgaacactttcaataaaccaggtttaattaatggaaatgggaattgcgctggaagaaagattcaattgatcaaagatgttaccttcaactccaagagtaacttaagagtcgtagaagtgaaggccgctgacagtgataaagaaacaaaagtaaggagcatagtctgtcaaaagtgtgagggaaatggtgcagtggcgtgctcacaatgtaaaggcgttggggttaactccgtcgatcatttcaacggacggtttaaagcaggtggactatgttggctgtgcagaggtaaaaaagatatattatgtggtgactgcaatggagctggatttcttggtggatttatgagtacgttcgatgagtagacttcagatgcactagtctcgagtagactcgggaggcaggtagaggcaggttcaaaggcagatccagaatttaaacttgatgagttcagtttctaaaattctcagtattgaactcattgtacttttgatattatgatttcataatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51077" stop="47438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50786" g_stop="50674" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49394" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="211" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48956" g_stop="48893" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="275" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719">
            <donor d_prob="0.868" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="372" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47963" g_stop="47738" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="599" r_length="227" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E466891" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50786" e_stop="50674"/>
          <exon e_start="49494" e_stop="49394"/>
          <exon e_start="48956" e_stop="48893"/>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGTAATATTGGACTTCCATGCATAGATATTAGTGCAAAATAACAATTAAATGTGCTCAATCAATAAGCAATGGCTACATCCAAGTAAAGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCAATGAATTCTCATGAGGGGAGCGGTATATTCCGGAGATTAATTTTTGACTAGATCTTAGTGAGACAACTGTTACATGTTAATCAACATAGTGTTTCTTTTGCTTGGATTTCTTTACTTAAAATGATTATATGCATCAAGTAGTAGTAGTTTTCCTTTTGATGTAGACCGCTTAATCGGAGTACACATCTTTTACAAACTTATCTCAAAAATTATTCATCAAAGTTATGTGAAAATTACGGTGTGTCTGAGTGAAAAGTGTCTAGTTCCAATACTTCTGCTAATGCTGCAGTCTTACTGGTTCTTCACCATGGTGTTACATGCTTATATTTGCTATTACAGTTCTTTTTCTTGCTTATACTCGTTATAATACCAAATTTCCGACTCATCAGAAGTAGATATCCATTCATAATGCTTACATAGACCTGAAATAATCCAATTTCAACTTGGATTTAGTTCACAATGTTCTGTTTCTTATACACTGTATCGCTCTCAGGTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTC-GGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTG</genome_strand>
        <mrna_strand>GGCAAA--CTCTCTGATTAAATTCAAAAAA-AAGAAGTGAAATTCAACTGTCTTAATGGCTAATTCTCTGTGTTTCACCCCTTTAGCTTCATTGAACACTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATGGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTTACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGACAGTGATAAAGAAACAAAAGTAAGGAGCATAGTCTGTCAAAAGTGTGAGGGAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGGCGTGCTCACAATGTAAAGGCGTTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCAGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAAAAAGATATATTATGTGGTGACTGCAATGGAGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTAGTCTCGAGTAGACTCGGGAGGCAGGTAGAGGCAGGTTCAAAGGCAGATCCAGAATTTAAACTTGATGAGTTCAGTTTCTAAAATTCTCAGTATTGAACTCATTGTACTTTTGATATTATGATTTCATAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298698" ref_strand="+" ref_description="SGN-E298698 [cLET-44-J7]">
      <seq>aattttggcaaattttctctgattaaattcaaaaaaaaataagtgaaattcaactgttttaatggcaaattctctgtgtttcacccctatagcttcattgaactctttcaataaaccaggtttaattaatcgaaatgggaattgcgctggaagaaagattcaattgatcaaagatgtaaccttcaactccaagagtaacttaagagtcgtagaagtgaaggccgctgacagtgataaagaaacaaaagtaaagagcatagtctgtcaaaagtgtgatggaaatggtgcagtggcgtgctcacaatgtaaaggcgctggggttaactccgtcgatcatttcaacggacggtttaaagccggtggactatgttggctgtgcagaggtaagaaagatatattgtgtggtgattgcaatggtgctggatttcttggtggatttatgagtacgttcgatgagtagacttcagatgcactggtctcgagtagactcggaagcaagtagaggcaggttcagaggcagatccggaatttaaacttgatgagttcagtttctataattctccgtattgaagtcattgtacttgtgaaattatgatttcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51092" stop="47443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50792" g_stop="50674" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49394" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="220" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48956" g_stop="48893" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="284" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="381" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47963" g_stop="47743" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="602" r_length="221" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E298698" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50792" e_stop="50674"/>
          <exon e_start="49494" e_stop="49394"/>
          <exon e_start="48956" e_stop="48893"/>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGTAATATTGGACTTCCATGCATAGATATTAGTGCAAAATAACAATTAAATGTGCTCAATCAATAAGCAATGGCTACATCCAAGTAAAGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCAATGAATTCTCATGAGGGGAGCGGTATATTCCGGAGATTAATTTTTGACTAGATCTTAGTGAGACAACTGTTACATGTTAATCAACATAGTGTTTCTTTTGCTTGGATTTCTTTACTTAAAATGATTATATGCATCAAGTAGTAGTAGTTTTCCTTTTGATGTAGACCGCTTAATCGGAGTACACATCTTTTACAAACTTATCTCAAAAATTATTCATCAAAGTTATGTGAAAATTACGGTGTGTCTGAGTGAAAAGTGTCTAGTTCCAATACTTCTGCTAATGCTGCAGTCTTACTGGTTCTTCACCATGGTGTTACATGCTTATATTTGCTATTACAGTTCTTTTTCTTGCTTATACTCGTTATAATACCAAATTTCCGACTCATCAGAAGTAGATATCCATTCATAATGCTTACATAGACCTGAAATAATCCAATTTCAACTTGGATTTAGTTCACAATGTTCTGTTTCTTATACACTGTATCGCTCTCAGGTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATA</genome_strand>
        <mrna_strand>AATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAAGCAAGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284481" ref_strand="+" ref_description="SGN-E284481 [cLER-16-J24]">
      <seq>aaattttctctgattaaattcaaaaaaaaataagtgaaattcaactgttttaatggcaaattctctgtgtttcacccctatagcttcattgaactctttcaataaaccaggtttaattaatcgaaatgggaattgcgctggaagaaagattcaattgatcaaagatgtaaccttcaactccaagagtaacttaagagtcgtagaagtgaaggccgctgacagtgataaagaaacaaaagtaaagagcatagtctgtcaaaagtgtgatggaaatggtgcagtggcgtgctcacaatgtaaaggcgctggggttaactccgtcgatcatttcaacggacggtttaaagccggtggactatgttggctgtgcagaggtaagaaagatatattgtgtggtgattgcaatggtgctggatttcttggtggatttatgagtacgttcgatgagtagacttcacatgcactggtctcgagtagactcggaggcaggtagaggcaggttcagaggcagatccggaatttaaacttgatgagttcagattctataattctccgtattgaagtcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51083" stop="47467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50783" g_stop="50674" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49394" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="211" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48956" g_stop="48893" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="275" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="372" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47963" g_stop="47767" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="569" r_length="197" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E284481" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50783" e_stop="50674"/>
          <exon e_start="49494" e_stop="49394"/>
          <exon e_start="48956" e_stop="48893"/>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGTAATATTGGACTTCCATGCATAGATATTAGTGCAAAATAACAATTAAATGTGCTCAATCAATAAGCAATGGCTACATCCAAGTAAAGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCAATGAATTCTCATGAGGGGAGCGGTATATTCCGGAGATTAATTTTTGACTAGATCTTAGTGAGACAACTGTTACATGTTAATCAACATAGTGTTTCTTTTGCTTGGATTTCTTTACTTAAAATGATTATATGCATCAAGTAGTAGTAGTTTTCCTTTTGATGTAGACCGCTTAATCGGAGTACACATCTTTTACAAACTTATCTCAAAAATTATTCATCAAAGTTATGTGAAAATTACGGTGTGTCTGAGTGAAAAGTGTCTAGTTCCAATACTTCTGCTAATGCTGCAGTCTTACTGGTTCTTCACCATGGTGTTACATGCTTATATTTGCTATTACAGTTCTTTTTCTTGCTTATACTCGTTATAATACCAAATTTCCGACTCATCAGAAGTAGATATCCATTCATAATGCTTACATAGACCTGAAATAATCCAATTTCAACTTGGATTTAGTTCACAATGTTCTGTTTCTTATACACTGTATCGCTCTCAGGTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTG</genome_strand>
        <mrna_strand>AAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCACATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGATTCTATAATTCTCCGTATTGAAGTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577029" ref_strand="+" ref_description="SGN-E577029 [32158]">
      <seq>gttaaaacccaacacatttttggcaaactctctgattaaattcaaaaaaaagaagtgaaattcaactgtcttaatggctaattctctgtgtttcacccctttagcttcattgaacactttcaataaaccaggtttaattaatggaaatgggaattgcgctggaagaaagattcaattgatcaaagatgttaccttcaactccaagagtaacttaatagtcgtagaagtgaaggccgctgacagtgataaagaaacaaaagtaaggagcatagtctgtcaaaagtgtgagggaaatggtgcagtggcgtgctcacaatgtaaaggcgttggggttaactccgtcgatcatttcaacggacggtttaaagcaggtggactatgttggctgtgcagaggtaaaaaagatatattatgtggtgactgcaatggagctggatttcttggtggatttatgagtacgttcgatgagtagacttcaggatgcactagtctcgagtagactcgggaggcaggtagaggcaggttcagaggcagatccagaatttaaactttgatgagttcagtttctaaaaattctcagtattgaactcatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51077" stop="47466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50806" g_stop="50674" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49394" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="232" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48956" g_stop="48893" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="296" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719">
            <donor d_prob="0.868" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="393" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47963" g_stop="47770" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="591" r_length="198" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E577029" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50806" e_stop="50674"/>
          <exon e_start="49494" e_stop="49394"/>
          <exon e_start="48956" e_stop="48893"/>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAAACC-AACACAATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGTAATATTGGACTTCCATGCATAGATATTAGTGCAAAATAACAATTAAATGTGCTCAATCAATAAGCAATGGCTACATCCAAGTAAAGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCAATGAATTCTCATGAGGGGAGCGGTATATTCCGGAGATTAATTTTTGACTAGATCTTAGTGAGACAACTGTTACATGTTAATCAACATAGTGTTTCTTTTGCTTGGATTTCTTTACTTAAAATGATTATATGCATCAAGTAGTAGTAGTTTTCCTTTTGATGTAGACCGCTTAATCGGAGTACACATCTTTTACAAACTTATCTCAAAAATTATTCATCAAAGTTATGTGAAAATTACGGTGTGTCTGAGTGAAAAGTGTCTAGTTCCAATACTTCTGCTAATGCTGCAGTCTTACTGGTTCTTCACCATGGTGTTACATGCTTATATTTGCTATTACAGTTCTTTTTCTTGCTTATACTCGTTATAATACCAAATTTCCGACTCATCAGAAGTAGATATCCATTCATAATGCTTACATAGACCTGAAATAATCCAATTTCAACTTGGATTTAGTTCACAATGTTCTGTTTCTTATACACTGTATCGCTCTCAGGTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCA-GATGCACTGGTCTCGAGTAGACTC-GGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAAC-TTGATGAGTTCAGTTTCT-ATAATTCTCCGTATTGAAGTCA</genome_strand>
        <mrna_strand>GTTAAAACCCAACACATTTTTGGCAAA--CTCTCTGATTAAATTC-AAAAAAAAGAAGTGAAATTCAACTGTCTTAATGGCTAATTCTCTGTGTTTCACCCCTTTAGCTTCATTGAACACTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATGGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTTACCTTCAACTCCAAGAGTAACTTAATAGTCGTAGAAGTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGACAGTGATAAAGAAACAAAAGTAAGGAGCATAGTCTGTCAAAAGTGTGAGGGAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGGCGTGCTCACAATGTAAAGGCGTTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCAGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAAAAAGATATATTATGTGGTGACTGCAATGGAGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGGATGCACTAGTCTCGAGTAGACTCGGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCAGAATTTAAACTTTGATGAGTTCAGTTTCTAAAAATTCTCAGTATTGAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290159" ref_strand="+" ref_description="SGN-E290159 [cLET-5-A19]">
      <seq>attttctctgattaaattcaaaaaaaaataagtgaaattcaactgttttaatggcaaattctctgtgtttcacccctatagcttcattgaactctttcaataaaccaggtttaattaatcgaaatgggaattgcgctggaagaaagattcaattgatcaaagatgtaaccttcaactccaagagtaacttaagagtcgtagaagtgaaggccgctgacagtgataaagaaacaaaagtaaagagcatagtctgtcaaaagtgtgatggaaatggtgcagtggcgtgctcacaatgtaaaggcgctggggttaactccgtcgatcatttcaacggacggtttaaagccggtggactatgttggctgtgcagaggtaagaaagatatattgtgtggtgattgcaatggtgctggatttcttggtggatttatgagtacgttcgatgagtagacttcagatgcactggtctcgagtagactcggaggcaggtagaggcaggttcagaggcagatccggaatttaaacttgatgagttcagtttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51081" stop="47490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50781" g_stop="50674" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49394" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="209" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48956" g_stop="48893" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="273" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="370" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47963" g_stop="47790" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="544" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E290159" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50781" e_stop="50674"/>
          <exon e_start="49494" e_stop="49394"/>
          <exon e_start="48956" e_stop="48893"/>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGTAATATTGGACTTCCATGCATAGATATTAGTGCAAAATAACAATTAAATGTGCTCAATCAATAAGCAATGGCTACATCCAAGTAAAGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCAATGAATTCTCATGAGGGGAGCGGTATATTCCGGAGATTAATTTTTGACTAGATCTTAGTGAGACAACTGTTACATGTTAATCAACATAGTGTTTCTTTTGCTTGGATTTCTTTACTTAAAATGATTATATGCATCAAGTAGTAGTAGTTTTCCTTTTGATGTAGACCGCTTAATCGGAGTACACATCTTTTACAAACTTATCTCAAAAATTATTCATCAAAGTTATGTGAAAATTACGGTGTGTCTGAGTGAAAAGTGTCTAGTTCCAATACTTCTGCTAATGCTGCAGTCTTACTGGTTCTTCACCATGGTGTTACATGCTTATATTTGCTATTACAGTTCTTTTTCTTGCTTATACTCGTTATAATACCAAATTTCCGACTCATCAGAAGTAGATATCCATTCATAATGCTTACATAGACCTGAAATAATCCAATTTCAACTTGGATTTAGTTCACAATGTTCTGTTTCTTATACACTGTATCGCTCTCAGGTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTAT</genome_strand>
        <mrna_strand>ATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295258" ref_strand="+" ref_description="SGN-E295258 [cLET-20-O12]">
      <seq>aattttggcaaattttctctgattaaattcaaaaaaaaataagtgaaattcaactgttttaatggcaaattctctgtgtttcacccctatagcttcattgaactctttcaataaaccaggtttaattaatcgaaatgggaattgcgctggaagaaagattcaattgatcaaagatgtaaccttcaactccaagagtaacttaagagtcgtagaagtgaaggccgctgacagtgataaagaaacaaaagtaaagagcatagtctgtcaaaagtgtgatggaaatggtgcagtggcgtgctcacaatgtaaaggcgctggggttaactccgtcgatcatttcaacggacggtttaaagccggtggactatgttggctgtgcagaggtaagaaagatatattgtgtggggattgcaatggtgctggatttcttggtggatttatgagtacgttcgatgagtagacttcagatgcactggtctcgagtagactcggaggcagggagaggcaggttcagaggcagatccggaatttaaacttgatgagttcagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51092" stop="47494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50792" g_stop="50674" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49394" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="220" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48956" g_stop="48893" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="284" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="381" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47963" g_stop="47794" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="551" r_length="170" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E295258" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50792" e_stop="50674"/>
          <exon e_start="49494" e_stop="49394"/>
          <exon e_start="48956" e_stop="48893"/>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGTAATATTGGACTTCCATGCATAGATATTAGTGCAAAATAACAATTAAATGTGCTCAATCAATAAGCAATGGCTACATCCAAGTAAAGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCAATGAATTCTCATGAGGGGAGCGGTATATTCCGGAGATTAATTTTTGACTAGATCTTAGTGAGACAACTGTTACATGTTAATCAACATAGTGTTTCTTTTGCTTGGATTTCTTTACTTAAAATGATTATATGCATCAAGTAGTAGTAGTTTTCCTTTTGATGTAGACCGCTTAATCGGAGTACACATCTTTTACAAACTTATCTCAAAAATTATTCATCAAAGTTATGTGAAAATTACGGTGTGTCTGAGTGAAAAGTGTCTAGTTCCAATACTTCTGCTAATGCTGCAGTCTTACTGGTTCTTCACCATGGTGTTACATGCTTATATTTGCTATTACAGTTCTTTTTCTTGCTTATACTCGTTATAATACCAAATTTCCGACTCATCAGAAGTAGATATCCATTCATAATGCTTACATAGACCTGAAATAATCCAATTTCAACTTGGATTTAGTTCACAATGTTCTGTTTCTTATACACTGTATCGCTCTCAGGTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTT</genome_strand>
        <mrna_strand>AATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAGAAAGATATATTGTGTGGGGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGGAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290102" ref_strand="+" ref_description="SGN-E290102 [cLET-5-J17]">
      <seq>taacctgaggttacatgtttttgttaaaaccaacacaattttggcaaattttctctgattaaattcaaaaaaaaataagtgaaattcaactgttttaatggcaaattctctgtgtttcacccctatagcttcattgaactctttcaataaaccaggtttaattaatcgaaatgggaattgcgctggaagaaagattcaattgatcaaagatgtaaccttcaactccaagagtaacttaagagtcgtagaagtgaaggccgctgacagtgataaagaaacaaaagtaaagagcatagtctgtcaaaagtgtgatggaaatggtgcagtggcgtgctcacaatgtaaaggcgctggggttaactccgtcgatcatttcaacggacggtttaaagccggtggactatgttggctgtgcagaggtaagaaagatatattgtgtggtgattgcaatggtgctggatttcttggtggatttatgagtacgttcgatgagtagacttcagatgcactggtctcgagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51128" stop="47560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50828" g_stop="50674" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49394" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="256" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48956" g_stop="48893" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="320" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="417" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47963" g_stop="47860" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="521" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E290102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50828" e_stop="50674"/>
          <exon e_start="49494" e_stop="49394"/>
          <exon e_start="48956" e_stop="48893"/>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCTGAGGTTACATGTTTTTGTTAAAACCAACACAATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGTAATATTGGACTTCCATGCATAGATATTAGTGCAAAATAACAATTAAATGTGCTCAATCAATAAGCAATGGCTACATCCAAGTAAAGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCAATGAATTCTCATGAGGGGAGCGGTATATTCCGGAGATTAATTTTTGACTAGATCTTAGTGAGACAACTGTTACATGTTAATCAACATAGTGTTTCTTTTGCTTGGATTTCTTTACTTAAAATGATTATATGCATCAAGTAGTAGTAGTTTTCCTTTTGATGTAGACCGCTTAATCGGAGTACACATCTTTTACAAACTTATCTCAAAAATTATTCATCAAAGTTATGTGAAAATTACGGTGTGTCTGAGTGAAAAGTGTCTAGTTCCAATACTTCTGCTAATGCTGCAGTCTTACTGGTTCTTCACCATGGTGTTACATGCTTATATTTGCTATTACAGTTCTTTTTCTTGCTTATACTCGTTATAATACCAAATTTCCGACTCATCAGAAGTAGATATCCATTCATAATGCTTACATAGACCTGAAATAATCCAATTTCAACTTGGATTTAGTTCACAATGTTCTGTTTCTTATACACTGTATCGCTCTCAGGTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTA</genome_strand>
        <mrna_strand>TAACCTGAGGTTACATGTTTTTGTTAAAACCAACACAATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285732" ref_strand="+" ref_description="SGN-E285732 [cLES-5-E9]">
      <seq>tttggcaaattttctctgattaaattcaaaaaaaaataagtgaaattcaactgttttaatggcaaattctctgtgtttcacccctatagcttcattgaactctttcaataaaccaggtttaattaatcgaaatgggaattgcgctggaagaaagattcaattgatcaaagatgtaaccttcaactccaagagtaacttaagagtcgtagaagtgaaggccgctgacagtgataaagaaacaaaagtaaagagcatagtctgtcaaaagtgtgatggaaatggtgcagtggcgtgctcacaatgtaaaggcgctggggttaactccgtcgatcatttcaacggacggtttaaagccggtggactatgttggctgtgcagaggtaagaaagatatattgtgtggtgattgcaatggtgctggatttcttggtggatttatgagtacgttcgatgagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51089" stop="47586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50789" g_stop="50674" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49394" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="217" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48956" g_stop="48893" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="281" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="378" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47963" g_stop="47886" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="456" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E285732" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50789" e_stop="50674"/>
          <exon e_start="49494" e_stop="49394"/>
          <exon e_start="48956" e_stop="48893"/>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGTAATATTGGACTTCCATGCATAGATATTAGTGCAAAATAACAATTAAATGTGCTCAATCAATAAGCAATGGCTACATCCAAGTAAAGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCAATGAATTCTCATGAGGGGAGCGGTATATTCCGGAGATTAATTTTTGACTAGATCTTAGTGAGACAACTGTTACATGTTAATCAACATAGTGTTTCTTTTGCTTGGATTTCTTTACTTAAAATGATTATATGCATCAAGTAGTAGTAGTTTTCCTTTTGATGTAGACCGCTTAATCGGAGTACACATCTTTTACAAACTTATCTCAAAAATTATTCATCAAAGTTATGTGAAAATTACGGTGTGTCTGAGTGAAAAGTGTCTAGTTCCAATACTTCTGCTAATGCTGCAGTCTTACTGGTTCTTCACCATGGTGTTACATGCTTATATTTGCTATTACAGTTCTTTTTCTTGCTTATACTCGTTATAATACCAAATTTCCGACTCATCAGAAGTAGATATCCATTCATAATGCTTACATAGACCTGAAATAATCCAATTTCAACTTGGATTTAGTTCACAATGTTCTGTTTCTTATACACTGTATCGCTCTCAGGTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTA</genome_strand>
        <mrna_strand>TTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297614" ref_strand="+" ref_description="SGN-E297614 [cLET-28-A19]">
      <seq>aattttggcaaattttctctgattaaattcaaaaaaaaataagtgaaattcaactgttttaatggcaaattctctgtgtttcacccctatagcttcattgaactctttcaataaaccaggtttaattaatcgaaatgggaattgcgctggaagaaagattcaattgatcaaagatgtaaccttcaactccaagagtaacttaagagtcgtagaagtgaaggccgctgacagtgataaagaaacaaaagtaaagagcatagtctgtcaaaagtgtgatggaaatggtgcagtggcgtgctcacaatgtaaaggcgctggggttaactccgtcgatcatttcaacggacggtttaaagccggtggactatgttggctgtgcagaggtaagaaagatatattgtgtggtgattgcaatggtgctggatttcttggtggatttatgagtacgttcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51092" stop="47590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50792" g_stop="50674" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49394" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="220" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48956" g_stop="48893" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="284" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="381" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47963" g_stop="47890" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="455" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E297614" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50792" e_stop="50674"/>
          <exon e_start="49494" e_stop="49394"/>
          <exon e_start="48956" e_stop="48893"/>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGTAATATTGGACTTCCATGCATAGATATTAGTGCAAAATAACAATTAAATGTGCTCAATCAATAAGCAATGGCTACATCCAAGTAAAGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCAATGAATTCTCATGAGGGGAGCGGTATATTCCGGAGATTAATTTTTGACTAGATCTTAGTGAGACAACTGTTACATGTTAATCAACATAGTGTTTCTTTTGCTTGGATTTCTTTACTTAAAATGATTATATGCATCAAGTAGTAGTAGTTTTCCTTTTGATGTAGACCGCTTAATCGGAGTACACATCTTTTACAAACTTATCTCAAAAATTATTCATCAAAGTTATGTGAAAATTACGGTGTGTCTGAGTGAAAAGTGTCTAGTTCCAATACTTCTGCTAATGCTGCAGTCTTACTGGTTCTTCACCATGGTGTTACATGCTTATATTTGCTATTACAGTTCTTTTTCTTGCTTATACTCGTTATAATACCAAATTTCCGACTCATCAGAAGTAGATATCCATTCATAATGCTTACATAGACCTGAAATAATCCAATTTCAACTTGGATTTAGTTCACAATGTTCTGTTTCTTATACACTGTATCGCTCTCAGGTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATG</genome_strand>
        <mrna_strand>AATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464006" ref_strand="+" ref_description="SGN-E464006 [cPRO-16-N11]">
      <seq>attaaattcaaaaaaaagaagtgaaattcaactgtcttaatggctaattctctgtgtttcacccctttagcttcattgaacactttcaataaaccaggtttaattaatggaaatgggaattgcgctggaagaaagattcaattgatcaaagatgttaccttcaactccaagagtaacttaagagtcgtagaagtgaaggccgctgacagtgataaagaaacaaaagtaaggagcatagtctgtcaaaagtgtgagggaaatggtgcagtggcgtgctcacaatgtaaaggcgttggggttaactccgtcgatcatttcaacggacggtttaaagcaggtggactatgttggctgtgcagaggtaaaaaagatatattatgtggtgactgcaatggagctggatttcttggtggatttatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51071" stop="47600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50771" g_stop="50674" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49394" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="198" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48956" g_stop="48893" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="262" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719">
            <donor d_prob="0.868" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="359" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47963" g_stop="47900" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="423" r_length="64" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E464006" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50771" e_stop="50674"/>
          <exon e_start="49494" e_stop="49394"/>
          <exon e_start="48956" e_stop="48893"/>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGTAATATTGGACTTCCATGCATAGATATTAGTGCAAAATAACAATTAAATGTGCTCAATCAATAAGCAATGGCTACATCCAAGTAAAGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCAATGAATTCTCATGAGGGGAGCGGTATATTCCGGAGATTAATTTTTGACTAGATCTTAGTGAGACAACTGTTACATGTTAATCAACATAGTGTTTCTTTTGCTTGGATTTCTTTACTTAAAATGATTATATGCATCAAGTAGTAGTAGTTTTCCTTTTGATGTAGACCGCTTAATCGGAGTACACATCTTTTACAAACTTATCTCAAAAATTATTCATCAAAGTTATGTGAAAATTACGGTGTGTCTGAGTGAAAAGTGTCTAGTTCCAATACTTCTGCTAATGCTGCAGTCTTACTGGTTCTTCACCATGGTGTTACATGCTTATATTTGCTATTACAGTTCTTTTTCTTGCTTATACTCGTTATAATACCAAATTTCCGACTCATCAGAAGTAGATATCCATTCATAATGCTTACATAGACCTGAAATAATCCAATTTCAACTTGGATTTAGTTCACAATGTTCTGTTTCTTATACACTGTATCGCTCTCAGGTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGT</genome_strand>
        <mrna_strand>ATTAAATTCAAAAAAAA-GAAGTGAAATTCAACTGTCTTAATGGCTAATTCTCTGTGTTTCACCCCTTTAGCTTCATTGAACACTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATGGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTTACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGACAGTGATAAAGAAACAAAAGTAAGGAGCATAGTCTGTCAAAAGTGTGAGGGAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGGCGTGCTCACAATGTAAAGGCGTTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCAGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAAAAAGATATATTATGTGGTGACTGCAATGGAGCTGGATTTCTTGGTGGATTTATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278355" ref_strand="-" ref_description="SGN-E278355 [cLEL-2-F7](-)">
      <seq>gcacgagaattttggcaaattttctctgattaaattcaaaaaaaaataagtgaaattcaactgttttaatggcaaattccatgtgcttcacccctatagcttcattgaactctttcaataaaccaggtttaattaatcgaaatgggaattgcgctggaagaaagattcaattgatcaaagatgtaaccttcaactccaagagtaacttaagagtcgtagaagtgaaggccgctgacagtgataaagaaacaaaagtaaagagcatagtctgtcaaaagtgtgatggaaatggtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51096" stop="48591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50799" g_stop="50674" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49394" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="227" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48956" g_stop="48893" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="291" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48892" i_stop="48672" i_length="221">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48671" g_stop="48667" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="296" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E278355" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278355" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50799" e_stop="50674"/>
          <exon e_start="49494" e_stop="49394"/>
          <exon e_start="48956" e_stop="48893"/>
          <exon e_start="48671" e_stop="48667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACACAATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGTAATATTGGACTTCCATGCATAGATATTAGTGCAAAATAACAATTAAATGTGCTCAATCAATAAGCAATGGCTACATCCAAGTAAAGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCA</genome_strand>
        <mrna_strand>GCACGAGAATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCCATGTGCTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATG.............................................................................................................................................................................................................................GTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296489" ref_strand="+" ref_description="SGN-E296489 [cLET-19-J12]">
      <seq>aattttggcaaattttctctgattaaattcaaaaaaaaataagtgaaattcaactgttttaatggcaaattctctgtgtttcacccctatagcttcattgaactctttcaataaaccaggtttaattaatcgaaatgggaattgcgctggaagaaagattcaattgatcaaagatgtaaccttcaactccaagagtaacttaagagtcgtagaagtgaaggccgctgacagtgataaagaaacaaaagtaaagagcatagtctgtcaaaagtgtgatggaaatggtgcagtggcgtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51092" stop="48591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50792" g_stop="50674" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49394" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="220" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48956" g_stop="48893" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="284" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E296489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50792" e_stop="50674"/>
          <exon e_start="49494" e_stop="49394"/>
          <exon e_start="48956" e_stop="48893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGTAATATTGGACTTCCATGCATAGATATTAGTGCAAAATAACAATTAAATGTGCTCAATCAATAAGCAATGGCTACATCCAAGTAAAGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATG</genome_strand>
        <mrna_strand>AATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295992" ref_strand="+" ref_description="SGN-E295992 [cLET-27-E24]">
      <seq>attttctctgattaaattcaaaaaaaaataagtgaaattcaactgttttaatggcaaattctctgtgtttcacccctatagcttcattgaactctttcaataaaccaggtttaattaatcgaaatgggaattgcgctggaagaaagattcaattgatcaaagatgtaaccttcaactccaagagtaacttaagagtcgtataagtgaaggccgctgacagtgataaagaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51081" stop="48630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50781" g_stop="50674" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49394" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="209" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48956" g_stop="48930" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="236" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E295992" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50781" e_stop="50674"/>
          <exon e_start="49494" e_stop="49394"/>
          <exon e_start="48956" e_stop="48930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGTAATATTGGACTTCCATGCATAGATATTAGTGCAAAATAACAATTAAATGTGCTCAATCAATAAGCAATGGCTACATCCAAGTAAAGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAA</genome_strand>
        <mrna_strand>ATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTATAAGTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGACAGTGATAAAGAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283926" ref_strand="+" ref_description="SGN-E283926 [cLER-13-B3]">
      <seq>tgaggttacatgtttttgttaaaaccaacacaattttggcaaattttctctgattaaattcaaaaaaaaataagtgaaattcaactgttttaatggcaaattctctgtgtttcacccctatagcttcattgaactctttcaataaaccaggtttaattaatcgaaatgggaattgcgctggaagaaagattcaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51123" stop="49146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50823" g_stop="50674" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49446" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="199" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E283926" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50823" e_stop="50674"/>
          <exon e_start="49494" e_stop="49446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGTTACATGTTTTTGTTAAAACCAACACAATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGAT</genome_strand>
        <mrna_strand>TGAGGTTACATGTTTTTGTTAAAACCAACACAATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345568" ref_strand="+" ref_description="SGN-E345568 [cTOF-18-J24]">
      <seq>tttgcagaaaatttgtgaaggtatttactttaatagagttggagagttggttgaggtttatgaagcagctgtctctgatcataatgggaatattacctttcacaagttggttggtagacttgacaatagtgcagtatctgccaccggtgccaagttggcttttaagtcaaatgaagagattgaagttcaagtaaaaactattcctcttgatgaggttatccaagaaacggagcgtgtactactgataaagatagatgttcaaggttgggagtatcatgtacttaagggagcatcaaagttattgtcaaggaagaaaggtgaagcaccttacctgatctacgaggaagatgagcgattgttgcaagccagcaatagcagtgctaaggaaatccgggagtttctacagagtgtgggttacaaccattgcactcaacatggtacagatgcacactgcacaaaaacagattgagaaggttatcatctacaaataatcttctgctacaactctggaaggagcatcaattcttaaaaattttaaaatatttgctatacaccgatttaaacaatcaactatcatgtttttttgggtgctataagcttagaatgattggtatagaacaaaacctgatgcgacagttgttcaaagtcgagctctacttttttcagttcgtatgaattggaaggctgactgataccatgttgaggggattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="57241" stop="55117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56941" g_stop="56836" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56835" i_stop="56024" i_length="812">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56023" g_stop="55417" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="713" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E345568" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56941" e_stop="56836"/>
          <exon e_start="56023" e_stop="55417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGAAAATTTGTGAAGGTATTTACTTTAATAGAGTTGGAGAGTTGGTTGAGGTTTATGAAGCAGCTGTCTCTGATCATAATGGGAATATTACCTTTCACAAGGTAGTTTTCAATTCAATTTGGTGTATATAAGTATTTCGAGTTCATATTATTGATCTTGTAGTTACTTGTCCTTCGTTTTCTATTACTATCTGTTGTTTCTTGTATTGTATTGTGTCGTTTTGTTTTAGTTTTCGTTCTGTTACTATTGCTATTTTTGTTATTATATGTTGTTTCTTGTACTTCCGTTACTTTTTTTCTTGGACTGTTTTTTGCTTGTCTTTGGTTTTTTTTTGATAGTATAACTAGTTTGCTAAATAGAATTTGTGTATATCAGACATATCATAGTTAAAGAACTGACCTTTATGCGATAACAATCATCGATTAACTGGACTGAATTGATTAAGTTATATGAAATCATGAGTAGTTTTTTCGTTGTTTGTATTGTTCTTTATCATTTTAGAGCTATGCGAAATTAAATTTTGAATGATGCTGTTTTTCTTGGTTTTTGTTTAGCAGTTATGTTTCTAGCTTGGTTATTTATGCGAAATATTTGATAATATTACTAATTTGCTAAATAGCAATCCTGTAACTTGGATATAATGTAGCTAGGTTTTGACCTTTACCATTAACATTCCTCAATTTACTTGTCCGCACTTGTATTTTCCTTTCTATTTTGGAGTTATGTGAGAGATGAAAATTCAAATGACACGATTTTGAATGAGATAAATAAATGACACTCTCATTCAATGACTTTGAAAAGGGAAGTTCAAAAAAATCAAGAGATAACGGCTTGTGTTCAGATTTATTTATTATGTTATTTGTTATTTTGTTGGCTACCCGCTAAATTTCTTCTGTACATGTATTGTTTCTAGTTGGTTGGTAGACTTGACAATAGTGCAGTATCTGCCACCGGTGCCAAGTTGGCTTTTAAGTCAAATGAAGAGATTGAAGTTCAAGTAAAAACTATTCCTCTTGATGAGGTTATCCAAGAAACGGAGCGTGTACTACTGATAAAGATAGATGTTCAAGGTTGGGAGTATCATGTACTTAAGGGAGCATCAAAGTTATTGTCAAGGAAGAAAGGTGAAGCACCTTACCTGATCTACGAGGAAGATGAGCGATTGTTGCAAGCCAGCAATAGCAGTGCTAAGGAAATCCGGGAGTTTCTACAGAGTGTGGGTTACAACCATTGCACTCAACATGGTACAGATGCACACTGCACAAAAACAGATTGAGAAGGTTATCATCTACAAATAATCTTCTGCTACAACTCTGGAAGGAGCATCAATTCTTAAAAATTTTAAAATATTTGCTATACACCGATTTAAACAATCAACTATCATGTTTTTTTGGGTGCTATAAGCTTAGAATGATTGGTATAGAACAAAACCTGATGCGACAGTTGTTCAAAGTCGAGCTCTACTTTTTTCAGTTCGTATGAATTGGAAGGCTGACTGATACCATGTTGAGGGGATTATG</genome_strand>
        <mrna_strand>TTTGCAGAAAATTTGTGAAGGTATTTACTTTAATAGAGTTGGAGAGTTGGTTGAGGTTTATGAAGCAGCTGTCTCTGATCATAATGGGAATATTACCTTTCACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTGGTAGACTTGACAATAGTGCAGTATCTGCCACCGGTGCCAAGTTGGCTTTTAAGTCAAATGAAGAGATTGAAGTTCAAGTAAAAACTATTCCTCTTGATGAGGTTATCCAAGAAACGGAGCGTGTACTACTGATAAAGATAGATGTTCAAGGTTGGGAGTATCATGTACTTAAGGGAGCATCAAAGTTATTGTCAAGGAAGAAAGGTGAAGCACCTTACCTGATCTACGAGGAAGATGAGCGATTGTTGCAAGCCAGCAATAGCAGTGCTAAGGAAATCCGGGAGTTTCTACAGAGTGTGGGTTACAACCATTGCACTCAACATGGTACAGATGCACACTGCACAAAAACAGATTGAGAAGGTTATCATCTACAAATAATCTTCTGCTACAACTCTGGAAGGAGCATCAATTCTTAAAAATTTTAAAATATTTGCTATACACCGATTTAAACAATCAACTATCATGTTTTTTTGGGTGCTATAAGCTTAGAATGATTGGTATAGAACAAAACCTGATGCGACAGTTGTTCAAAGTCGAGCTCTACTTTTTTCAGTTCGTATGAATTGGAAGGCTGACTGATACCATGTTGAGGGGATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581126" ref_strand="+" ref_description="SGN-E581126 [6369]">
      <seq>cacaaattgaagaaaattttctncaatttcttcaaaaaaaagtgagtttttcaatggcgattcatggggagagaaaccacatcaggatcttcgccccaagaatctccttctctttttcttcacttctcttctcctccttatcttcctctatctcacatcacaaacccaaccccacaatccaaaacccctcaaatcccttaaaaatccaatctttaatctcccaataaagccatttgattgttacaattcacctcaagcttaccctgttatagctagtgtagttgaaggtgtgaaatacccttttcttttttcactttcagattttgggaatttgcctgagaaacctcataagaatattcagagggtacttaaaggaaaaccctttagaaagcctgatatatctgtgactgtgcaagaattgttggaaaagatgaagggtgaaaatgggattttttttggatgttggagctaatgtagaaatggcctacttttgctgctgctgtaatggggtttacagtttgggcctttgacctgtttttgagaatttgcaggaaattgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="57772" stop="56624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57472" g_stop="56924" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="561" r_length="545" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E581126" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57472" e_stop="56924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCAAATTTCTTCAAAAAAAAAGTGAGTTTTCCATGGCAAATTCATGGAGA-AGAAACCAACAAATCAAGATCTTCACCCCCAAGAATCTCCTTCTCTTTTTCTTCACTTCTCTTCTCCTCCTTATTTTCCTCTATCTCACATCACAAACCCAACCCCACAATCCAAAACCCCTCAAATCTATTAAAAATCCAATCTTTAATCTCCCCATAAAGCCATTTGATTGTTACAATTCACCTCAAGCTTACCCTGTTATAGCTAGTGTAGTTGAAGGTGTGAAATACCCTTTTCTTTTTTCACTTTCAGATTTTGGGAATTTGCCTGAAAAACCTCATAAGAATATTCAGAGGGTACTTAAAGGAAAACCCTTTAGAAAGCCTGATATATCTGTGACTCTGCAAGAATTGTTGGAAAAGATGAAGGGTAAAAATGGGA-TTTTTTTGGATGTTGGAGCTAATGTAGGAATGG-CTACTTTTGCTGCTGCTGTAATGGGGTTTAAAGTTTTGGCCTTTGAACCTGTTTTTGAGAATTTGCAGAAAATTTGTGA</genome_strand>
        <mrna_strand>TTTTCTNCAATTTCTTCAA-AAAAAAGTGAGTTTTTCAATGGCGATTCATGGGGAGAGAAACC-AC--ATCAGGATCTTC-GCCCCAAGAATCTCCTTCTCTTTTTCTTCACTTCTCTTCTCCTCCTTATCTTCCTCTATCTCACATCACAAACCCAACCCCACAATCCAAAACCCCTCAAATCCCTTAAAAATCCAATCTTTAATCTCCCAATAAAGCCATTTGATTGTTACAATTCACCTCAAGCTTACCCTGTTATAGCTAGTGTAGTTGAAGGTGTGAAATACCCTTTTCTTTTTTCACTTTCAGATTTTGGGAATTTGCCTGAGAAACCTCATAAGAATATTCAGAGGGTACTTAAAGGAAAACCCTTTAGAAAGCCTGATATATCTGTGACTGTGCAAGAATTGTTGGAAAAGATGAAGGGTGAAAATGGGATTTTTTTTGGATGTTGGAGCTAATGTAGAAATGGCCTACTTTTGCTGCTGCTGTAATGGGGTTTACAGTTTGGGCCTTTG-ACCTGTTTTTGAGAATTTGCAGGAAA-TTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358025" ref_strand="+" ref_description="SGN-E358025 [cLHT-32-G21]">
      <seq>aaagtttcacttcaattcaagatccaatcttttttctcaaatttcttcaaaaaaaaagtgagttttccatggcaaattcatggagaagaaaccaacaaatcaagatcttcacccccaagaatctccttctctttttcttcacttctcttctcctccttattttcctctatctcacatcacaaacccaaccccacaatccaaaacccctcaaatctattaaaaatccaatctttaatctccccataaagccatttgattgttacaattcacctcaagcttaccctgttatagctagtgtagttgaaggtgtgaaatacccttttcttttttcactttcagattttgggaatttgcctgaaaaacctcataagaatattcagagggtacttaaaggaaaaccctttagaaagcctgatatatctgtgactctgcaagaattgttggaaaagatgaaaggtaaaaatgggatttttttggatgttggagctaatgtaggaatggctacttttgctgctgctgtaatggggtttaaagttttggcctttgaacctgtttttgagaatttgcagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="57803" stop="56630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57503" g_stop="56930" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-E358025" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57503" e_stop="56930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTCACTTCAATTCAAGATCCAATCTTTTTTCTCAAATTTCTTCAAAAAAAAAGTGAGTTTTCCATGGCAAATTCATGGAGAAGAAACCAACAAATCAAGATCTTCACCCCCAAGAATCTCCTTCTCTTTTTCTTCACTTCTCTTCTCCTCCTTATTTTCCTCTATCTCACATCACAAACCCAACCCCACAATCCAAAACCCCTCAAATCTATTAAAAATCCAATCTTTAATCTCCCCATAAAGCCATTTGATTGTTACAATTCACCTCAAGCTTACCCTGTTATAGCTAGTGTAGTTGAAGGTGTGAAATACCCTTTTCTTTTTTCACTTTCAGATTTTGGGAATTTGCCTGAAAAACCTCATAAGAATATTCAGAGGGTACTTAAAGGAAAACCCTTTAGAAAGCCTGATATATCTGTGACTCTGCAAGAATTGTTGGAAAAGATGAAGGGTAAAAATGGGATTTTTTTGGATGTTGGAGCTAATGTAGGAATGGCTACTTTTGCTGCTGCTGTAATGGGGTTTAAAGTTTTGGCCTTTGAACCTGTTTTTGAGAATTTGCAGAAAAT</genome_strand>
        <mrna_strand>AAAGTTTCACTTCAATTCAAGATCCAATCTTTTTTCTCAAATTTCTTCAAAAAAAAAGTGAGTTTTCCATGGCAAATTCATGGAGAAGAAACCAACAAATCAAGATCTTCACCCCCAAGAATCTCCTTCTCTTTTTCTTCACTTCTCTTCTCCTCCTTATTTTCCTCTATCTCACATCACAAACCCAACCCCACAATCCAAAACCCCTCAAATCTATTAAAAATCCAATCTTTAATCTCCCCATAAAGCCATTTGATTGTTACAATTCACCTCAAGCTTACCCTGTTATAGCTAGTGTAGTTGAAGGTGTGAAATACCCTTTTCTTTTTTCACTTTCAGATTTTGGGAATTTGCCTGAAAAACCTCATAAGAATATTCAGAGGGTACTTAAAGGAAAACCCTTTAGAAAGCCTGATATATCTGTGACTCTGCAAGAATTGTTGGAAAAGATGAAAGGTAAAAATGGGATTTTTTTGGATGTTGGAGCTAATGTAGGAATGGCTACTTTTGCTGCTGCTGTAATGGGGTTTAAAGTTTTGGCCTTTGAACCTGTTTTTGAGAATTTGCAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>121</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5604" PGL_stop="1869"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5604" e_stop="5356"/>
            <exon e_start="4496" e_stop="1869"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.932" e_score="0.996"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="5604" e_stop="5356" e_length="249"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.932">
            <gDNA_intron_boundary i_start="5355" i_stop="4497" i_length="859"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="4496" e_stop="1869" e_length="2628"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5604" stop="5356"/>
              <exon start="4496" stop="4245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5600" stop="5356"/>
              <exon start="4496" stop="4275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5599" stop="5356"/>
              <exon start="4496" stop="4306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5599" stop="5356"/>
              <exon start="4496" stop="4308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5599" stop="5356"/>
              <exon start="4496" stop="4308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5595" stop="5356"/>
              <exon start="4496" stop="4126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5588" stop="5356"/>
              <exon start="4496" stop="4126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5587" stop="5356"/>
              <exon start="4496" stop="3971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5586" stop="5356"/>
              <exon start="4496" stop="1872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5391" stop="5356"/>
              <exon start="4496" stop="3944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4467" stop="3971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4363" stop="3693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4304" stop="3846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4274" stop="3573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4220" stop="3551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4172" stop="3551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4150" stop="3373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4146" stop="3339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4112" stop="3329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4096" stop="3570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3931" stop="3294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3918" stop="3241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3872" stop="3391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3744" stop="3085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3715" stop="3291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3715" stop="3315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3712" stop="3032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3690" stop="3085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3690" stop="3116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3680" stop="3220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3652" stop="3241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3616" stop="3034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3573" stop="2720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3540" stop="3188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3437" stop="2766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3389" stop="2918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3370" stop="2775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3364" stop="2782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3262" stop="2441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3262" stop="2494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3063" stop="2494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3044" stop="2252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3032" stop="2495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3032" stop="2495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2776" stop="2113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2766" stop="2104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2766" stop="2150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2757" stop="1870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2683" stop="1869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2679" stop="1869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2610" stop="1872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2591" stop="1872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2585" stop="2082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281756" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2446" stop="1888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2420" stop="1886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2277" stop="1889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538754" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCTTTGTTCTCTCTTTAACCTCAATCTTTCTTTCTCTCTCTATTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTGAAAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTG : GTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTGTTTGTCTTAAAACAACGTT</gDNA_template>
            <first_frame> L  S  L  F  S  L  *  P  Q  S  F  F  L  S  L  F  F  A  L  L  C  W  G  S  L  K  I  C  I  F  E  G  S  *  K  K  N  W  I  F  S  S  G  M  R  I  L  V  K  D  I  I  W  V  V  F  F  L  V  Q  N  L  I  F  F  A  L  Q  F  G  I  E  E  Q  S  C  L  L  L  L  I  T  V  :  V  M  M  S  S  T  L  V  D  R  F  V  L  Q  I  W  V  S  C  C  L  W  V  M  L  M  F  T  V  L  L  G  R  G  L  E  L  V  A  R  L  L  S  K  T  D  Q  R  I  H  L  L  R  F  F  L  M  N  A  Y  L  R  S  S  D  D  C  L  E  A  E  K  G  V  Q  Q  L  V  F  L  S  A  G  L  Q  C  *  V  A  *  K  T  L  K  F  A  G  A  R  A  I  T  I  *  M  T  L  *  *  S  L  K  M  K  I  L  K  L  N  V  M  D  T  L  P  G  V  W  K  G  R  K  L  L  I  L  D  L  L  Q  L  Q  L  G  R  L  P  V  V  D  *  E  S  F  L  F  E  G  V  T  Q  F  V  V  L  L  M  S  V  Y  L  L  L  H  M  G  V  L  L  L  G  S  Y  H  C  G  M  F  L  L  S  E  M  K  V  S  W  R  L  Q  E  N  A  I  H  *  K  S  *  I  *  A  T  V  V  Q  S  P  T  R  V  L  L  Q  *  Q  R  I  A  L  A  *  L  H  *  L  L  N  P  V  Q  I  L  E  T  K  A  C  K  L  L  E  N  T  A  P  N  Y  S  L  L  Q  L  R  T  A  R  L  S  E  I  R  E  L  L  V  F  C  H  Q  V  L  Q  C  *  Q  K  *  N  Y  M  V  *  T  L  P  I  S  R  L  L  S  L  V  T  T  A  S  *  L  P  V  L  I  F  V  H  F  V  M  *  V  R  R  D  F  G  S  W  V  M  L  K  A  S  S  L  W  F  L  *  Q  S  P  Y  A  R  E  P  L  M  S  V  L  K  L  W  E  R  D  A  Q  I  S  N  I  C  A  F  A  S  V  A  L  F  L  T  V  V  L  L  L  S  L  K  R  L  D  L  S  R  V  *  S  W  R  S  A  T  E  L  P  K  *  V  S  L  M  Q  F  Q  T  A  G  S  *  S  L  F  P  *  *  S  A  W  E  S  R  I  *  L  Y  K  L  P  C  C  L  H  V  N  L  F  G  P  C  L  S  E  A  V  Q  D  S  G  A  V  A  *  L  W  L  V  S  S  A  P  S  C  I  N  *  I  S  V  G  F  V  E  *  P  M  L  V  F  S  H  S  W  R  T  V  K  D  L  L  R  *  T  L  A  T  A  *  T  *  Q  T  K  W  C  F  H  W  L  C  D  M  A  R  P  L  N  C  *  I  S  T  D  A  G  R  L  P  M  Q  V  *  W  Q  L  Q  I  I  A  H  Y  L  L  I  L  M  F  L  R  V  Q  *  L  I  L  V  *  L  L  Y  P  V  E  C  K  *  I  C  R  S  F  P  Y  Q  V  A  P  W  Y  R  T  R  V  S  F  L  L  K  S  *  E  R  I  Y  S  A  *  I  S  S  I  A  P  L  V  A  A  Q  S  S  F  L  W  R  L  C  G  G  V  T  S  S  P  K  P  T  K  G  T  R  K  C  I  R  N  G  Q  N  E  *  A  E  S  *  I  G  S  F  S  L  A  I  T  E  A  N  M  S  V  L  F  L  A  R  I  Y  S  W  L  S  N  T  S  V  S  R  L  F  S  R  T  L  W  H  T  S  F  S  H  H  F  L  Q  G  F  V  K  S  K  P  C  F  S  H  F  W  R  L  T  S  I  M  P  W  S  P  E  N  T  V  T  *  Y  *  D  *  N  F  H  S  C  C  S  S  R  A  R  R  F  E  S  F  S  *  N  C  D  R  Q  D  S  S  R  I  C  L  F  C  A  *  L  H  C  R  N  Q  T  L  V  V  *  F  F  F  M  F  K  S  L  *  C  F  H  C  K  Y  S  I  M  C  L  L  V  F  S  C  F  E  Q  I  S  V  V  V  V  P  V  I  P  R  G  L  A  I  T  T  L  Y  R  L  F  F  *  P  V  P  S  F  L  I  G  L  S  M  S  Y  F  F  T  R  F  H  I  F  R  F  V  L  L  A  A  M  F  F  F  S  I  Y  N  E  V  I  V  C  L  S  *  N  N  V </first_frame>
            <second_frame>  F  L  C  S  L  F  N  L  N  L  S  F  S  L  Y  F  L  P  Y  S  V  G  V  L  *  K  S  V  F  L  R  V  L  E  K  K  I  G  F  F  H  L  E  C  E  S  W  L  R  I  *  S  G  L  C  F  S  W  F  K  I  *  S  F  L  L  Y  S  L  G  L  K  N  N  H  A  Y  S  C  *  L  Q  W :   *  *  *  V  L  L  W  W  I  V  L  F  C  R  F  G  S  H  V  V  F  G  S  C  *  C  L  L  S  S  *  E  E  G  *  N  *  W  P  V  C  C  R  R  P  I  K  G  S  I  S  *  G  S  S  *  *  M  P  I  *  D  P  Q  T  I  A  W  R  P  R  K  G  C  S  S  L  C  F  *  A  L  A  Y  S  V  E  *  R  E  K  L  *  N  L  Q  E  Q  E  L  *  Q  S  K  *  R  Y  N  D  L  *  R  *  R  S  *  S  *  M  *  W  I  P  Y  Q  V  C  G  R  E  E  S  Y  *  Y  *  T  C  C  N  C  S  W  D  V  Y  P  W  W  T  R  K  A  F  Y  S  R  E  *  L  S  S  W  Y  Y  *  C  R  S  I  C  C  C  T  W  V  S  F  S  *  G  P  I  I  V  E  C  S  F  Y  R  R  *  R  S  L  G  G  C  K  R  M  P  F  I  R  K  A  R  S  E  P  L  S  F  N  L  Q  Q  G  S  C  C  N  S  R  E  L  P  *  L  D  F  I  D  Y  *  I  L  S  K  Y  W  K  R  R  L  A  S  C  W  K  I  L  H  Q  T  T  V  S  Y  N  *  G  L  P  A  C  R  R  S  G  S  C  *  S  S  V  I  R  C  F  N  V  N  K  S  E  T  T  W  S  K  H  Y  R  F  L  A  C  C  H  W  S  L  R  Q  A  D  Y  Q  S  *  S  L  F  T  S  *  C  E  S  E  G  I  L  G  H  G  *  C  S  R  P  P  V  F  G  F  F  D  N  H  L  M  P  G  S  H  *  C  R  S  *  S  C  G  K  G  M  P  K  S  Q  I  Y  V  H  S  Q  V  L  L  C  F  *  R  W  S  C  C  F  R  *  R  G  W  I  S  R  E  F  N  L  G  G  V  Q  Q  N  Y  P  S  R  Y  P  *  C  S  F  K  L  Q  E  V  K  V  S  F  P  S  E  V  H  G  N  Q  G  S  S  S  T  N  F  H  A  V  S  M  *  I  S  S  V  L  V  Y  P  K  L  S  R  I  R  E  Q  *  L  S  Y  G  W  *  A  L  P  Q  A  A  S  I  R  S  Q  W  A  L  W  N  N  R  C  W  S  S  P  T  L  G  E  L  *  R  T  C  *  G  E  P  *  R  L  P  E  L  D  R  P  S  G  A  F  I  G  Y  A  T  W  R  D  P  *  I  V  E  S  R  R  M  Q  E  G  Y  R  C  K  F  S  G  N  C  R  L  L  P  I  T  Y  *  S  *  C  F  *  E  C  N  N  *  F  W  C  S  C  F  I  P  W  S  A  S  E  F  A  G  P  F  L  I  R  L  L  H  G  I  E  Q  E  C  P  F  S  *  K  V  R  R  E  S  T  R  L  E  S  P  A  L  L  R  *  L  Q  L  S  R  A  S  C  G  G  F  V  E  V  *  H  P  L  L  N  P  Q  R  A  Q  G  N  A  F  E  M  V  K  T  N  K  Q  K  A  K  L  V  H  S  A  W  Q  L  Q  K  Q  T  *  V  F  F  F  *  P  V  Y  I  R  G  Y  L  I  L  Q  C  L  G  C  F  P  G  R  Y  G  I  H  L  F  P  T  I  F  C  R  A  S  S  N  R  N  P  V  S  A  I  F  G  D  L  P  P  S  C  H  G  L  L  R  I  Q  S  P  S  T  E  I  K  I  F  T  H  A  A  P  R  E  P  G  G  L  N  H  S  A  K  T  A  I  D  K  I  H  R  A  F  A  S  F  V  L  S  Y  I  A  G  I  R  H  *  L  C  S  F  F  S  C  S  R  V  F  S  V  F  T  V  S  I  L  L  C  V  F  *  S  L  V  A  L  S  K  F  L  L  L  W  C  L  L  F  P  G  A  W  P  L  Q  P  Y  I  G  C  F  F  N  Q  S  L  V  F  *  *  D  Y  Q  C  P  I  F  L  P  G  S  I  Y  S  D  L  Y  S  L  P  L  C  F  F  F  L  Y  I  M  K  *  *  F  V  C  L  K  T  T   </second_frame>
            <third_frame>   F  F  V  L  S  L  T  S  I  F  L  S  L  S  I  F  C  P  T  L  L  G  F  F  K  N  L  Y  F  *  G  F  L  K  K  K  L  D  F  F  I  W  N  A  N  L  G  *  G  Y  N  L  G  C  V  F  L  G  S  K  S  D  L  F  C  F  T  V  W  D  *  R  T  I  M  P  T  L  V  N  Y  S   : G  D  D  E  F  Y  S  G  G  S  F  C  S  A  D  L  G  L  M  L  S  L  G  H  A  D  V  Y  C  P  P  R  K  R  A  R  I  S  G  P  F  V  V  E  D  R  S  K  D  P  S  L  E  V  L  P  D  E  C  L  F  E  I  L  R  R  L  P  G  G  R  E  R  G  A  A  A  C  V  S  K  R  W  L  T  V  L  S  S  V  K  N  S  E  I  C  R  S  K  S  Y  N  N  L  N  D  A  I  M  I  S  K  D  E  D  L  E  V  E  C  D  G  Y  L  T  R  C  V  E  G  K  K  A  T  D  I  R  L  A  A  I  A  V  G  T  S  T  R  G  G  L  G  K  L  S  I  R  G  S  N  S  V  R  G  I  T  N  V  G  L  S  A  V  A  H  G  C  P  S  L  R  V  L  S  L  W  N  V  P  S  I  G  D  E  G  L  L  E  V  A  R  E  C  H  S  L  E  K  L  D  L  S  H  C  R  S  I  S  N  K  G  L  V  A  I  A  E  N  C  P  S  L  T  S  L  T  I  E  S  C  P  N  I  G  N  E  G  L  Q  A  V  G  K  Y  C  T  K  L  Q  S  L  T  I  K  D  C  P  L  V  G  D  Q  G  V  A  S  L  L  S  S  G  A  S  M  L  T  K  V  K  L  H  G  L  N  I  T  D  F  S  L  A  V  I  G  H  Y  G  K  L  I  T  S  L  N  L  C  S  L  R  N  V  S  Q  K  G  F  W  V  M  G  N  A  Q  G  L  Q  S  L  V  S  L  T  I  T  L  C  Q  G  A  T  D  V  G  L  E  A  V  G  K  G  C  P  N  L  K  Y  M  C  I  R  K  C  C  F  V  S  D  G  G  L  V  A  F  A  K  E  A  G  S  L  E  S  L  I  L  E  E  C  N  R  I  T  Q  V  G  I  L  N  A  V  S  N  C  R  K  L  K  S  L  S  L  V  K  C  M  G  I  K  D  L  A  L  Q  T  S  M  L  S  P  C  E  S  L  R  S  L  S  I  R  S  C  P  G  F  G  S  S  S  L  A  M  V  G  K  L  C  P  K  L  H  Q  L  D  L  S  G  L  C  G  I  T  D  A  G  L  L  P  L  L  E  N  C  E  G  L  V  K  V  N  L  S  D  C  L  N  L  T  D  Q  V  V  L  S  L  A  M  R  H  G  E  T  L  E  L  L  N  L  D  G  C  R  K  V  T  D  A  S  L  V  A  I  A  D  Y  C  P  L  L  I  D  L  D  V  S  K  S  A  I  T  D  S  G  V  A  A  L  S  R  G  V  Q  V  N  L  Q  V  L  S  L  S  G  C  S  M  V  S  N  K  S  V  L  S  L  K  K  L  G  E  N  L  L  G  L  N  L  Q  H  C  S  V  S  C  S  S  V  E  L  L  V  E  A  L  W  R  C  D  I  L  S  *  T  H  K  G  H  K  E  M  H  S  K  W  S  K  R  I  S  R  K  L  N  W  F  I  Q  P  G  N  Y  R  S  K  H  E  C  S  F  F  S  P  Y  I  F  V  A  I  *  Y  F  S  V  S  V  V  F  Q  D  A  M  A  Y  I  F  F  P  P  F  F  A  G  L  R  Q  I  E  T  L  F  Q  P  F  L  E  T  Y  L  H  H  A  M  V  S  *  E  Y  S  H  L  V  L  R  L  K  F  S  L  M  L  L  L  E  S  Q  A  V  *  I  I  Q  L  K  L  R  *  T  R  F  I  A  H  L  P  L  L  C  L  A  T  L  Q  E  S  D  T  S  C  V  V  F  F  H  V  Q  E  S  L  V  F  S  L  *  V  F  Y  Y  V  S  F  S  L  *  L  L  *  A  N  F  C  C  C  G  A  C  Y  S  Q  G  L  G  H  Y  N  L  I  *  V  V  F  L  T  S  P  *  F  F  D  R  I  I  N  V  L  F  F  Y  Q  V  P  Y  I  Q  I  C  T  P  C  R  Y  V  F  F  F  Y  I  *  *  S  N  S  L  F  V  L  K  Q  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5389" stop="5356"/>
                    <exon start="4496" stop="2608"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1920</number_coding_nucleotides>
                  <number_encoded_amino_acids>640</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTIMPTLVNYSGDDEFYSGGSFCSADLGLMLSLGHADVYCPPRKRARISGPFVVEDRSKDPSLEVLPDECLFEILRRLPGGRERGAAACVSKRWLTVLSSVKNSEICRSKSYNNLNDAIMISKDEDLEVECDGYLTRCVEGKKATDIRLAAIAVGTSTRGGLGKLSIRGSNSVRGITNVGLSAVAHGCPSLRVLSLWNVPSIGDEGLLEVARECHSLEKLDLSHCRSISNKGLVAIAENCPSLTSLTIESCPNIGNEGLQAVGKYCTKLQSLTIKDCPLVGDQGVASLLSSGASMLTKVKLHGLNITDFSLAVIGHYGKLITSLNLCSLRNVSQKGFWVMGNAQGLQSLVSLTITLCQGATDVGLEAVGKGCPNLKYMCIRKCCFVSDGGLVAFAKEAGSLESLILEECNRITQVGILNAVSNCRKLKSLSLVKCMGIKDLALQTSMLSPCESLRSLSIRSCPGFGSSSLAMVGKLCPKLHQLDLSGLCGITDAGLLPLLENCEGLVKVNLSDCLNLTDQVVLSLAMRHGETLELLNLDGCRKVTDASLVAIADYCPLLIDLDVSKSAITDSGVAALSRGVQVNLQVLSLSGCSMVSNKSVLSLKKLGENLLGLNLQHCSVSCSSVELLVEALWRCDILS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2491" stop="2174"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVYIRGYLILQCLGCFPGRYGIHLFPTIFCRASSNRNPVSAIFGDLPPSCHGLLRIQSPSTEIKIFTHAAPREPGGLNHSAKTAIDKIHRAFASFVLSYIAGIRH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7603" PGL_stop="7015"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7603" e_stop="7015"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7603" e_stop="7015" e_length="589"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7603" stop="7015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244031" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACTATAATACAGTATATGAAAAAAATTTTTAGCGATATTTAGTTAACGATAATTAGCATGTTTTAGCAATGCTAAATTTAATAATATTTTAATTAATATGAATAAAAATTTTAGCATATTTTATTTATGTGTATATTGATTATCACTAAAAAATATTTTTATTACAATAACGTACCATGAATTAATTAATCGGACCAATGAATACGTTGATTCACATTATAAAATTACAAAAATATAGTGTTTCGAATGTCTAAATTAACATGGTGCCAATTTGGACTTCCAATTATTCATCTTCCACGCGTTCAAATGTGGTATTTTTCTCTTTTCATATTAAGCGTTATCGATGTATTTTTAGATTAAATTTTTAAATTTTTCAATAAATTTGAGATTATTTTAAAAATATATAATATTATTAAATTGTTATATTTTAAAGAGGATAAATTAGCGAGATATAATCATTTCTACATAGTTATCATTAATACACATATGAAATAAAATTAGTACTAGACGTGAGTGACATTTCGTGATTAAAGTCTTTATTAATATATGTTTTGTTAATTAAAAATTAAAATGTATTTAATAAATA</gDNA_template>
            <first_frame> N  T  I  I  Q  Y  M  K  K  I  F  S  D  I  *  L  T  I  I  S  M  F  *  Q  C  *  I  *  *  Y  F  N  *  Y  E  *  K  F  *  H  I  L  F  M  C  I  L  I  I  T  K  K  Y  F  Y  Y  N  N  V  P  *  I  N  *  S  D  Q  *  I  R  *  F  T  L  *  N  Y  K  N  I  V  F  R  M  S  K  L  T  W  C  Q  F  G  L  P  I  I  H  L  P  R  V  Q  M  W  Y  F  S  L  F  I  L  S  V  I  D  V  F  L  D  *  I  F  K  F  F  N  K  F  E  I  I  L  K  I  Y  N  I  I  K  L  L  Y  F  K  E  D  K  L  A  R  Y  N  H  F  Y  I  V  I  I  N  T  H  M  K  *  N  *  Y  *  T  *  V  T  F  R  D  *  S  L  Y  *  Y  M  F  C  *  L  K  I  K  M  Y  L  I  N  </first_frame>
            <second_frame>  T  L  *  Y  S  I  *  K  K  F  L  A  I  F  S  *  R  *  L  A  C  F  S  N  A  K  F  N  N  I  L  I  N  M  N  K  N  F  S  I  F  Y  L  C  V  Y  *  L  S  L  K  N  I  F  I  T  I  T  Y  H  E  L  I  N  R  T  N  E  Y  V  D  S  H  Y  K  I  T  K  I  *  C  F  E  C  L  N  *  H  G  A  N  L  D  F  Q  L  F  I  F  H  A  F  K  C  G  I  F  L  F  S  Y  *  A  L  S  M  Y  F  *  I  K  F  L  N  F  S  I  N  L  R  L  F  *  K  Y  I  I  L  L  N  C  Y  I  L  K  R  I  N  *  R  D  I  I  I  S  T  *  L  S  L  I  H  I  *  N  K  I  S  T  R  R  E  *  H  F  V  I  K  V  F  I  N  I  C  F  V  N  *  K  L  K  C  I  *  *  I </second_frame>
            <third_frame>   H  Y  N  T  V  Y  E  K  N  F  *  R  Y  L  V  N  D  N  *  H  V  L  A  M  L  N  L  I  I  F  *  L  I  *  I  K  I  L  A  Y  F  I  Y  V  Y  I  D  Y  H  *  K  I  F  L  L  Q  *  R  T  M  N  *  L  I  G  P  M  N  T  L  I  H  I  I  K  L  Q  K  Y  S  V  S  N  V  *  I  N  M  V  P  I  W  T  S  N  Y  S  S  S  T  R  S  N  V  V  F  F  S  F  H  I  K  R  Y  R  C  I  F  R  L  N  F  *  I  F  Q  *  I  *  D  Y  F  K  N  I  *  Y  Y  *  I  V  I  F  *  R  G  *  I  S  E  I  *  S  F  L  H  S  Y  H  *  Y  T  Y  E  I  K  L  V  L  D  V  S  D  I  S  *  L  K  S  L  L  I  Y  V  L  L  I  K  N  *  N  V  F  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0223G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="10068" PGL_stop="10353"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10068" e_stop="10353"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="10068" e_stop="10353" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10068" stop="10353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAAGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTATTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGTAGATGGTTAGAACTAGAGCAACAACTACGCCAACACTAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  K  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  I  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  *  M  V  R  T  R  A  T  T  T  P  T  L  T  P  A  R  Q  E  T  T  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  S  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  F  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  Q  L  R  Q  H  *  H  R  P  D  K  K  Q  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  V  D  G  *  N  *  S  N  N  Y  A  N  T  N  T  G  Q  T  R  N  N  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0223G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="13069" PGL_stop="10360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13069" e_stop="10360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="13069" e_stop="10360" e_length="2710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13069" stop="12357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13069" stop="12474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13069" stop="12544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12998" stop="12319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12998" stop="12640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12549" stop="11891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12480" stop="11719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12480" stop="11820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12077" stop="11747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11870" stop="11313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11866" stop="11104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11786" stop="10998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11784" stop="11252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11710" stop="11014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11150" stop="10431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11147" stop="10484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10792" stop="10360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCAACTGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTTGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTAAAAATTCGTAATGCCCATACCTCGTTCGAAAAGTAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAATCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAACACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAATCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCTTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAATAATACGGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATTAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTGGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGATTAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACTTCCCGAACCCTGCCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTAATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGACGAATTCGCTCTTGAGGACTAAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACAACCTAACTTGCTCTAGGCTCAAGAACTCATCTCTTTTTCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAATAAGCTAGAGAAGGAGGCCCAAGTTATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCATCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATTGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTACATGCCCTGTAGTCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACCGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCATTTCCTTATTTTGCACTTTTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCAGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACAGCCCCTTGCCGCTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  W  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  L  I  H  Q  A  H  E  R  S  R  G  I  R  *  T  K  R  H  H  *  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  I  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  N  T  P  R  R  C  T  W  S  N  K  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  C  A  W  F  E  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  I  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  F  P  H  *  R  V  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  S  H  T  Q  N  H  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  Y  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  K  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  *  Y  G  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  R  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  L  P  L  P  F  W  *  P  P  L  P  R  P  P  R  P  P  D  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  F  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  S  I  G  P  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  V  P  L  N  S  P  P  F  R  N  L  F  N  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  N  L  T  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  K  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  L  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  L  V  I  T  C  P  V  V  R  R  G  N  V  L  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  G  A  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  R  V  G  W  G  G  I  S  L  F  C  T  F  S  V  S  P  S  S  P  S  L  I  T  S  S  V  S  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  Q  P  L  A  A  V  L  </first_frame>
            <second_frame>  N  P  L  T  N  Q  L  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  S  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  K  N  S  *  C  P  Y  L  V  R  K  V  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  T  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  S  K  H  P  L  L  I  I  F  L  A  R  R  K  E  T  M  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  R  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  L  D  A  S  A  S  D  R  P  G  K  G  N  N  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  M  W  W  P  Q  F  A  H  Y  L  C  R  F  G  D  H  H  Y  L  D  H  H  V  L  Q  I  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  W  S  Q  A  *  A  P  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  E  L  S  N  F  P  N  P  A  L  *  C  K  Y  H  *  T  H  L  P  F  E  T  F  L  M  S  M  S  *  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  D  E  F  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  T  *  L  A  L  G  S  R  T  H  L  F  F  Y  P  S  K  F  G  G  Y  T  S  P  *  I  S  *  R  R  R  P  K  L  *  V  V  P  L  L  V  D  T  R  Y  V  T  A  I  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  C  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  H  A  L  *  S  D  E  E  M  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  P  G  V  S  G  P  D  Q  T  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  Y  F  A  L  F  Q  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  S  P  L  P  L  F  F </second_frame>
            <third_frame>   I  P  *  Q  I  N  C  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  L  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  H  S  S  S  S  *  T  Q  Q  G  H  S  L  D  Q  K  T  S  L  K  I  R  N  A  H  T  S  F  E  K  *  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  N  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  V  C  L  V  R  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  N  L  N  T  L  Y  *  S  F  S  *  H  E  E  R  R  R  C  G  P  D  W  K  C  S  H  L  P  T  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  P  E  S  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  L  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  E  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  I  I  R  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  *  M  P  P  L  Q  T  A  Q  G  K  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  G  G  P  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  L  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  G  T  I  F  P  N  M  S  N  L  P  T  S  I  T  F  S  G  V  K  H  R  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  N  *  V  T  S  R  T  L  P  S  S  V  S  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  R  S  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  T  N  S  L  L  R  T  K  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  C  I  D  R  Q  P  N  L  L  *  A  Q  E  L  I  S  F  S  I  P  Q  S  S  G  D  I  L  L  H  K  *  A  R  E  G  G  P  S  Y  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  S  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  T  C  H  Y  M  P  C  S  Q  T  R  K  C  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  R  G  C  L  A  L  I  R  Q  P  A  K  I  S  Q  N  L  I  D  H  L  *  G  R  L  G  W  H  F  L  I  L  H  F  F  S  F  P  I  L  P  F  S  Y  Y  L  L  S  Q  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  P  C  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10838" stop="10545"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNQKIVSILRFSTLEDWRFQFQELTEKFMLITCHYMPCSQTRKCAYFQWNIHAGSHSSRMLYLRSLRCWCRKHRGCLALIRQPAKISQNLIDHL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11799" stop="11530"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENVDPGSNNTEAMQSQTRRLPVMTALDASASDRPGKGNNGPYRSSVRCPYHVVMWWPQFAHYLCRFGDHHYLDHHVLQINGLYHDHLYL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11639" stop="11385"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGGPSLPITSAVLVTTITSTTTSSRLTASTMTTSTSSYWGSITLSGTIFPNMSNLPTSITFSGVKHRPLGEVLTGLRWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12342" stop="12097"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKSKHPLLIIFLARRKETMRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10558" stop="10361"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISRVGWGGISLFCTFSVSPSSPSLITSSVSGGVTALVSDGLGARPLPLEDVLPRPLPQPLAAVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12873" stop="12676"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKISFIKLMNAAGAFVRPKDITKNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11329" stop="11135"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPLNSPPFRNLFNVDVVVKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSDLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="11054" PGL_stop="12497"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11054" e_stop="11226"/>
            <exon e_start="11970" e_stop="12497"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.908"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="11054" e_stop="11226" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11227" i_stop="11969" i_length="743"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="11970" e_stop="12497" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11054" stop="11226"/>
              <exon start="11970" stop="12497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGTTAGGTTGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTTAGTCCTCAAGAGCGAATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGATGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAAGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGATTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCAGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGTTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  S  *  V  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  *  S  S  R  A  N  S  S  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R :   N  G  *  F  *  C  D  S  G  Y  D  L  A  F  S  A  I  C  N  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  P  V  S  V  G  R  *  L  H  F  Q  S  G  P  H  R  L  L  S  S  C  *  E  N  D  *  *  R  V  F  R  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  L  Y  *  S  R  T  R  H  T  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  G  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  V  R  L  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  V  S  F  L  R  A  K  K  M  I  S  K  G  C  L  D  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  V  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  L  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  L  V  L  K  S  E  F  V  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  :  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  Q  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  T  R  *  C  G  K  V  T  T  L  P  I  R  S  A  S  S  P  F  F  V  L  R  K  *  L  V  K  G  V  *  I  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  Q  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  S  N  Q  A  H  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  R  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  F  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11055" stop="11226"/>
                    <exon start="11970" stop="12496"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVRLSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQIAATAKSFQEMDDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIVSFLRAKKMISKGCLDFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGVPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="14460" PGL_stop="14284"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14460" e_stop="14284"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="14460" e_stop="14284" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14460" stop="14284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCTGCTAAAGGTAGGAAACTATCTCAATGGCCACCAAACTCTATCACACATGCATGAAGCATATCCTCCAACACTTGAATTGTTCGCTCAGACTGACCGTCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  W  P  P  N  S  I  T  H  A  *  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  Q  M  G  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  L  L  K  V  G  N  Y  L  N  G  H  Q  T  L  S  H  M  H  E  A  Y  P  P  T  L  E  L  F  A  Q  T  D  R   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  K  W  G  H  I  N  T  *  V  I  A  I  I  V  *  K  L  C  *  R  *  E  T  I  S  M  A  T  K  L  Y  H  T  C  M  K  H  I  L  Q  H  L  N  C  S  L  R  L  T  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0223G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="26055" PGL_stop="26346"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26055" e_stop="26346"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="26055" e_stop="26346" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26055" stop="26346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26056" stop="26230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207313" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGATTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAACTTGAACGTGCATGGTTTACGTGCGGGCTAAGGGCGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGATCAAAGACAAAGGCAGTTCACCCGAAATTGCTGAGATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGGAAGC</gDNA_template>
            <first_frame> R  N  L  L  D  L  T  T  C  R  H  A  K  D  L  G  I  G  L  G  M  D  D  G  K  T  V  Q  H  K  F  K  V  L  G  C  W  Q  G  N  L  N  V  H  G  L  R  A  G  *  G  R  W  Q  D  S  M  L  T  *  *  S  K  A  V  K  T  W  Q  D  Q  R  Q  R  Q  F  T  R  N  C  *  D  K  T  K  C  G  R  Q  L  K  Y  S  K  C  W  K  </first_frame>
            <second_frame>  A  I  Y  L  I  *  L  R  A  D  M  P  R  I  W  A  L  V  L  A  W  M  M  A  K  Q  C  N  T  S  S  R  C  L  G  V  G  K  A  T  *  T  C  M  V  Y  V  R  A  K  G  V  G  K  T  A  C  *  L  D  E  A  R  L  *  R  L  G  K  I  K  D  K  G  S  S  P  E  I  A  E  I  K  L  S  V  E  D  S  *  N  I  L  S  V  G  S </second_frame>
            <third_frame>   Q  S  T  *  S  N  Y  V  Q  T  C  Q  G  F  G  H  W  S  W  H  G  *  W  Q  N  S  A  T  Q  V  Q  G  A  W  V  L  A  R  Q  L  E  R  A  W  F  T  C  G  L  R  A  L  A  R  Q  H  V  D  L  M  K  Q  G  C  E  D  L  A  R  S  K  T  K  A  V  H  P  K  L  L  R  *  N  *  V  W  K  T  A  K  I  F  *  V  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0223G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="33113" PGL_stop="36702"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33113" e_stop="33801"/>
            <exon e_start="34927" e_stop="35150"/>
            <exon e_start="36019" e_stop="36126"/>
            <exon e_start="36255" e_stop="36508"/>
            <exon e_start="36686" e_stop="36698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.988" e_score="0.991"/>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.188" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.801" e_score="1.000"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="33113" e_stop="33801" e_length="689"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.988">
            <gDNA_intron_boundary i_start="33802" i_stop="34926" i_length="1125"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34927" e_stop="35150" e_length="224"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="35151" i_stop="36018" i_length="868"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36019" e_stop="36126" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.188">
            <gDNA_intron_boundary i_start="36127" i_stop="36254" i_length="128"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36255" e_stop="36508" e_length="254"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.801">
            <gDNA_intron_boundary i_start="36509" i_stop="36685" i_length="177"/>
          </intron>
          <exon e_serial="5" e_score="0.714">
            <gDNA_exon_boundary e_start="36686" e_stop="36698" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33113" stop="33801"/>
              <exon start="34927" stop="34985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33178" stop="33577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33261" stop="33801"/>
              <exon start="34927" stop="35138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33261" stop="33776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33264" stop="33801"/>
              <exon start="34927" stop="35117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33328" stop="33776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33339" stop="33578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33565" stop="33801"/>
              <exon start="34927" stop="35150"/>
              <exon start="36019" stop="36126"/>
              <exon start="36255" stop="36508"/>
              <exon start="36686" stop="36691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33615" stop="33801"/>
              <exon start="34927" stop="35150"/>
              <exon start="36019" stop="36126"/>
              <exon start="36255" stop="36387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33634" stop="33801"/>
              <exon start="34927" stop="35150"/>
              <exon start="36019" stop="36126"/>
              <exon start="36255" stop="36508"/>
              <exon start="36686" stop="36698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612001" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35084" stop="35150"/>
              <exon start="36019" stop="36126"/>
              <exon start="36255" stop="36508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402332" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36073" stop="36126"/>
              <exon start="36255" stop="36508"/>
              <exon start="36686" stop="36691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36074" stop="36126"/>
              <exon start="36255" stop="36508"/>
              <exon start="36686" stop="36692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308432" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAATTTGAAAAACTTCCCATAAATTCCATTAAAAAACAATCATTTTTATATTCATTTTTCTACATATTTCATCATATAGATACACTGATTGTTGTATCTATTAGCTTTTGCTTGTAAGAAACCCTTATACACATTAAAGAATACTATAAAGATTCAATTTTGTATAGCAATCATCACTTCTTTCTTGTTCTAATCCATTCAAGAAGAAGGTTAATCTGTCCTTTTCACTTCTCTTTTTTTTTCAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATATCACCCTTATCTCAATCTCAACCCCTTTTGGAGAAACCTCAGTTTACAGTTTTGAACAAGTCTCAAAATCAGTTTTTTTCAATACCCTTTTCAAGATTCACTCAAAGTTGTAATCTTTCTTTGAAAAAATCAAGGATGGTGGTTGTTTCAGCAACAACTGCTGCTGAGAAATCAAATAAGAGGTATCCTGGTGAGGCTAAGGGGTTTGTGGAGGAAATGAGGTTTGTGGCTATGAAGTTGCATACTAAGGACCAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCCAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAGAATTGTGGAAAAGGCTCCTTTTCCTGAGT : ATGCTGAGTTCAGGAATACAGGATTAGAAAGGTCTGAGGTTCTAGCAAAGGATTTGGAATGGTTTAGGCAGCAGGGTCATGCCATCCCGGAACCATCAACTCCTGGTGTCACCTATGCTAGTTACTTAGAGGAGCTATCAGAAAAGGATCCTCAAGCATTTATTTGCCATTTTTACAACACCTACTTTGCTCATTCAGCTGGAGGCCGCATGATAGGGAAAAAG : GTAGCTGAAAAGGTACTTGACAAGAAAGAGCTGGAATTCTACAAATGGGACGGCGATCTTTCTCAGCTGCTGCAGAATGTTAGGGATAAGCTGAACAAAGTTGCAGAA : AACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTTTCTTGATGCACAACTTTGCGCTTTGTTTCCTCGTTTTAACTTGTACATTGGATGGTTGAAAGGTCAAATTTCTTTGAATATTTGTGTTCCTTTTCACTTTCTTTCTGTCTATGTTGTGTAAGAACTTGATTATAAATAAGTGCTACATCATTATTCAACACTCAAAA : CCAAAAAAAAATG</gDNA_template>
            <first_frame> *  N  L  K  N  F  P  *  I  P  L  K  N  N  H  F  Y  I  H  F  S  T  Y  F  I  I  *  I  H  *  L  L  Y  L  L  A  F  A  C  K  K  P  L  Y  T  L  K  N  T  I  K  I  Q  F  C  I  A  I  I  T  S  F  L  F  *  S  I  Q  E  E  G  *  S  V  L  F  T  S  L  F  F  S  N  T  L  C  S  R  L  F  L  *  D  G  F  Y  I  T  L  I  S  I  S  T  P  F  G  E  T  S  V  Y  S  F  E  Q  V  S  K  S  V  F  F  N  T  L  F  K  I  H  S  K  L  *  S  F  F  E  K  I  K  D  G  G  C  F  S  N  N  C  C  *  E  I  K  *  E  V  S  W  *  G  *  G  V  C  G  G  N  E  V  C  G  Y  E  V  A  Y  *  G  P  G  *  G  R  G  K  R  A  C  R  S  A  F  G  Q  V  G  A  *  C  *  R  V  L  E  V  L  G  G  *  Q  I  G  L  *  Y  F  G  K  N  C  G  K  G  S  F  S  *  V :   C  *  V  Q  E  Y  R  I  R  K  V  *  G  S  S  K  G  F  G  M  V  *  A  A  G  S  C  H  P  G  T  I  N  S  W  C  H  L  C  *  L  L  R  G  A  I  R  K  G  S  S  S  I  Y  L  P  F  L  Q  H  L  L  C  S  F  S  W  R  P  H  D  R  E  K   : G  S  *  K  G  T  *  Q  E  R  A  G  I  L  Q  M  G  R  R  S  F  S  A  A  A  E  C  *  G  *  A  E  Q  S  C  R   : K  L  D  *  R  G  E  E  S  L  S  G  R  D  R  E  V  I  Q  V  L  R  G  H  S  P  F  D  I  F  L  M  H  N  F  A  L  C  F  L  V  L  T  C  T  L  D  G  *  K  V  K  F  L  *  I  F  V  F  L  F  T  F  F  L  S  M  L  C  K  N  L  I  I  N  K  C  Y  I  I  I  Q  H  S  K  :  P  K  K  N  </first_frame>
            <second_frame>  E  I  *  K  T  S  H  K  F  H  *  K  T  I  I  F  I  F  I  F  L  H  I  S  S  Y  R  Y  T  D  C  C  I  Y  *  L  L  L  V  R  N  P  Y  T  H  *  R  I  L  *  R  F  N  F  V  *  Q  S  S  L  L  S  C  S  N  P  F  K  K  K  V  N  L  S  F  S  L  L  F  F  F  Q  I  P  F  V  Q  D  S  S  F  K  M  A  S  I  S  P  L  S  Q  S  Q  P  L  L  E  K  P  Q  F  T  V  L  N  K  S  Q  N  Q  F  F  S  I  P  F  S  R  F  T  Q  S  C  N  L  S  L  K  K  S  R  M  V  V  V  S  A  T  T  A  A  E  K  S  N  K  R  Y  P  G  E  A  K  G  F  V  E  E  M  R  F  V  A  M  K  L  H  T  K  D  Q  A  K  E  G  E  K  E  P  V  D  Q  P  L  A  K  W  E  P  S  V  E  G  Y  L  K  F  L  V  D  S  K  L  V  Y  D  T  L  E  R  I  V  E  K  A  P  F  P  E   : Y  A  E  F  R  N  T  G  L  E  R  S  E  V  L  A  K  D  L  E  W  F  R  Q  Q  G  H  A  I  P  E  P  S  T  P  G  V  T  Y  A  S  Y  L  E  E  L  S  E  K  D  P  Q  A  F  I  C  H  F  Y  N  T  Y  F  A  H  S  A  G  G  R  M  I  G  K  K  :  V  A  E  K  V  L  D  K  K  E  L  E  F  Y  K  W  D  G  D  L  S  Q  L  L  Q  N  V  R  D  K  L  N  K  V  A  E  :  N  W  T  R  E  E  K  N  H  C  L  E  E  T  E  K  S  F  K  F  S  G  A  I  L  R  L  I  F  S  *  C  T  T  L  R  F  V  S  S  F  *  L  V  H  W  M  V  E  R  S  N  F  F  E  Y  L  C  S  F  S  L  S  F  C  L  C  C  V  R  T  *  L  *  I  S  A  T  S  L  F  N  T  Q  N :   Q  K  K  M </second_frame>
            <third_frame>   K  F  E  K  L  P  I  N  S  I  K  K  Q  S  F  L  Y  S  F  F  Y  I  F  H  H  I  D  T  L  I  V  V  S  I  S  F  C  L  *  E  T  L  I  H  I  K  E  Y  Y  K  D  S  I  L  Y  S  N  H  H  F  F  L  V  L  I  H  S  R  R  R  L  I  C  P  F  H  F  S  F  F  F  K  Y  P  L  F  K  T  L  P  L  R  W  L  L  Y  H  P  Y  L  N  L  N  P  F  W  R  N  L  S  L  Q  F  *  T  S  L  K  I  S  F  F  Q  Y  P  F  Q  D  S  L  K  V  V  I  F  L  *  K  N  Q  G  W  W  L  F  Q  Q  Q  L  L  L  R  N  Q  I  R  G  I  L  V  R  L  R  G  L  W  R  K  *  G  L  W  L  *  S  C  I  L  R  T  R  L  R  K  G  K  K  S  L  *  I  S  L  W  P  S  G  S  L  V  L  K  G  T  *  S  S  W  W  I  A  N  W  F  M  I  L  W  K  E  L  W  K  R  L  L  F  L  S  :  M  L  S  S  G  I  Q  D  *  K  G  L  R  F  *  Q  R  I  W  N  G  L  G  S  R  V  M  P  S  R  N  H  Q  L  L  V  S  P  M  L  V  T  *  R  S  Y  Q  K  R  I  L  K  H  L  F  A  I  F  T  T  P  T  L  L  I  Q  L  E  A  A  *  *  G  K  R :   *  L  K  R  Y  L  T  R  K  S  W  N  S  T  N  G  T  A  I  F  L  S  C  C  R  M  L  G  I  S  *  T  K  L  Q  K :   T  G  L  E  R  R  R  I  I  V  W  K  R  Q  R  S  H  S  S  S  P  G  P  F  S  V  *  Y  F  L  D  A  Q  L  C  A  L  F  P  R  F  N  L  Y  I  G  W  L  K  G  Q  I  S  L  N  I  C  V  P  F  H  F  L  S  V  Y  V  V  *  E  L  D  Y  K  *  V  L  H  H  Y  S  T  L  K   : T  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33282" stop="33801"/>
                    <exon start="34927" stop="35150"/>
                    <exon start="36019" stop="36126"/>
                    <exon start="36255" stop="36347"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSSLLSCSNPFKKKVNLSFSLLFFFQIPFVQDSSFKMASISPLSQSQPLLEKPQFTVLNKSQNQFFSIPFSRFTQSCNLSLKKSRMVVVSATTAAEKSNKRYPGEAKGFVEEMRFVAMKLHTKDQAKEGEKEPVDQPLAKWEPSVEGYLKFLVDSKLVYDTLERIVEKAPFPEYAEFRNTGLERSEVLAKDLEWFRQQGHAIPEPSTPGVTYASYLEELSEKDPQAFICHFYNTYFAHSAGGRMIGKKVAEKVLDKKELEFYKWDGDLSQLLQNVRDKLNKVAENWTREEKNHCLEETEKSFKFSGAILRLIFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33113" e_stop="33801"/>
            <exon e_start="34927" e_stop="35150"/>
            <exon e_start="36019" e_stop="36126"/>
            <exon e_start="36255" e_stop="36498"/>
            <exon e_start="36686" e_stop="36702"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.988" e_score="0.991"/>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="0.978"/>
          <exon-intron don_prob="0.993" acc_prob="0.188" e_score="0.963"/>
          <exon-intron don_prob="0.000" acc_prob="0.801" e_score="1.000"/>
          <exon-only e_score="0.824"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="33113" e_stop="33801" e_length="689"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.988">
            <gDNA_intron_boundary i_start="33802" i_stop="34926" i_length="1125"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="34927" e_stop="35150" e_length="224"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="35151" i_stop="36018" i_length="868"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="36019" e_stop="36126" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.188">
            <gDNA_intron_boundary i_start="36127" i_stop="36254" i_length="128"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36255" e_stop="36498" e_length="244"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.801">
            <gDNA_intron_boundary i_start="36499" i_stop="36685" i_length="187"/>
          </intron>
          <exon e_serial="5" e_score="0.824">
            <gDNA_exon_boundary e_start="36686" e_stop="36702" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33113" stop="33801"/>
              <exon start="34927" stop="34985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33178" stop="33577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33261" stop="33801"/>
              <exon start="34927" stop="35138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33261" stop="33776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33264" stop="33801"/>
              <exon start="34927" stop="35117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33328" stop="33776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33339" stop="33578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33615" stop="33801"/>
              <exon start="34927" stop="35150"/>
              <exon start="36019" stop="36126"/>
              <exon start="36255" stop="36387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36073" stop="36126"/>
              <exon start="36255" stop="36498"/>
              <exon start="36686" stop="36702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545055" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAATTTGAAAAACTTCCCATAAATTCCATTAAAAAACAATCATTTTTATATTCATTTTTCTACATATTTCATCATATAGATACACTGATTGTTGTATCTATTAGCTTTTGCTTGTAAGAAACCCTTATACACATTAAAGAATACTATAAAGATTCAATTTTGTATAGCAATCATCACTTCTTTCTTGTTCTAATCCATTCAAGAAGAAGGTTAATCTGTCCTTTTCACTTCTCTTTTTTTTTCAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATATCACCCTTATCTCAATCTCAACCCCTTTTGGAGAAACCTCAGTTTACAGTTTTGAACAAGTCTCAAAATCAGTTTTTTTCAATACCCTTTTCAAGATTCACTCAAAGTTGTAATCTTTCTTTGAAAAAATCAAGGATGGTGGTTGTTTCAGCAACAACTGCTGCTGAGAAATCAAATAAGAGGTATCCTGGTGAGGCTAAGGGGTTTGTGGAGGAAATGAGGTTTGTGGCTATGAAGTTGCATACTAAGGACCAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCCAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAGAATTGTGGAAAAGGCTCCTTTTCCTGAGT : ATGCTGAGTTCAGGAATACAGGATTAGAAAGGTCTGAGGTTCTAGCAAAGGATTTGGAATGGTTTAGGCAGCAGGGTCATGCCATCCCGGAACCATCAACTCCTGGTGTCACCTATGCTAGTTACTTAGAGGAGCTATCAGAAAAGGATCCTCAAGCATTTATTTGCCATTTTTACAACACCTACTTTGCTCATTCAGCTGGAGGCCGCATGATAGGGAAAAAG : GTAGCTGAAAAGGTACTTGACAAGAAAGAGCTGGAATTCTACAAATGGGACGGCGATCTTTCTCAGCTGCTGCAGAATGTTAGGGATAAGCTGAACAAAGTTGCAGAA : AACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTTTCTTGATGCACAACTTTGCGCTTTGTTTCCTCGTTTTAACTTGTACATTGGATGGTTGAAAGGTCAAATTTCTTTGAATATTTGTGTTCCTTTTCACTTTCTTTCTGTCTATGTTGTGTAAGAACTTGATTATAAATAAGTGCTACATCATTATTCA : CCAAAAAAAAATGCAAA</gDNA_template>
            <first_frame> *  N  L  K  N  F  P  *  I  P  L  K  N  N  H  F  Y  I  H  F  S  T  Y  F  I  I  *  I  H  *  L  L  Y  L  L  A  F  A  C  K  K  P  L  Y  T  L  K  N  T  I  K  I  Q  F  C  I  A  I  I  T  S  F  L  F  *  S  I  Q  E  E  G  *  S  V  L  F  T  S  L  F  F  S  N  T  L  C  S  R  L  F  L  *  D  G  F  Y  I  T  L  I  S  I  S  T  P  F  G  E  T  S  V  Y  S  F  E  Q  V  S  K  S  V  F  F  N  T  L  F  K  I  H  S  K  L  *  S  F  F  E  K  I  K  D  G  G  C  F  S  N  N  C  C  *  E  I  K  *  E  V  S  W  *  G  *  G  V  C  G  G  N  E  V  C  G  Y  E  V  A  Y  *  G  P  G  *  G  R  G  K  R  A  C  R  S  A  F  G  Q  V  G  A  *  C  *  R  V  L  E  V  L  G  G  *  Q  I  G  L  *  Y  F  G  K  N  C  G  K  G  S  F  S  *  V :   C  *  V  Q  E  Y  R  I  R  K  V  *  G  S  S  K  G  F  G  M  V  *  A  A  G  S  C  H  P  G  T  I  N  S  W  C  H  L  C  *  L  L  R  G  A  I  R  K  G  S  S  S  I  Y  L  P  F  L  Q  H  L  L  C  S  F  S  W  R  P  H  D  R  E  K   : G  S  *  K  G  T  *  Q  E  R  A  G  I  L  Q  M  G  R  R  S  F  S  A  A  A  E  C  *  G  *  A  E  Q  S  C  R   : K  L  D  *  R  G  E  E  S  L  S  G  R  D  R  E  V  I  Q  V  L  R  G  H  S  P  F  D  I  F  L  M  H  N  F  A  L  C  F  L  V  L  T  C  T  L  D  G  *  K  V  K  F  L  *  I  F  V  F  L  F  T  F  F  L  S  M  L  C  K  N  L  I  I  N  K  C  Y  I  I  I  H :   Q  K  K  M  Q  </first_frame>
            <second_frame>  E  I  *  K  T  S  H  K  F  H  *  K  T  I  I  F  I  F  I  F  L  H  I  S  S  Y  R  Y  T  D  C  C  I  Y  *  L  L  L  V  R  N  P  Y  T  H  *  R  I  L  *  R  F  N  F  V  *  Q  S  S  L  L  S  C  S  N  P  F  K  K  K  V  N  L  S  F  S  L  L  F  F  F  Q  I  P  F  V  Q  D  S  S  F  K  M  A  S  I  S  P  L  S  Q  S  Q  P  L  L  E  K  P  Q  F  T  V  L  N  K  S  Q  N  Q  F  F  S  I  P  F  S  R  F  T  Q  S  C  N  L  S  L  K  K  S  R  M  V  V  V  S  A  T  T  A  A  E  K  S  N  K  R  Y  P  G  E  A  K  G  F  V  E  E  M  R  F  V  A  M  K  L  H  T  K  D  Q  A  K  E  G  E  K  E  P  V  D  Q  P  L  A  K  W  E  P  S  V  E  G  Y  L  K  F  L  V  D  S  K  L  V  Y  D  T  L  E  R  I  V  E  K  A  P  F  P  E   : Y  A  E  F  R  N  T  G  L  E  R  S  E  V  L  A  K  D  L  E  W  F  R  Q  Q  G  H  A  I  P  E  P  S  T  P  G  V  T  Y  A  S  Y  L  E  E  L  S  E  K  D  P  Q  A  F  I  C  H  F  Y  N  T  Y  F  A  H  S  A  G  G  R  M  I  G  K  K  :  V  A  E  K  V  L  D  K  K  E  L  E  F  Y  K  W  D  G  D  L  S  Q  L  L  Q  N  V  R  D  K  L  N  K  V  A  E  :  N  W  T  R  E  E  K  N  H  C  L  E  E  T  E  K  S  F  K  F  S  G  A  I  L  R  L  I  F  S  *  C  T  T  L  R  F  V  S  S  F  *  L  V  H  W  M  V  E  R  S  N  F  F  E  Y  L  C  S  F  S  L  S  F  C  L  C  C  V  R  T  *  L  *  I  S  A  T  S  L  F   : T  K  K  K  C  K </second_frame>
            <third_frame>   K  F  E  K  L  P  I  N  S  I  K  K  Q  S  F  L  Y  S  F  F  Y  I  F  H  H  I  D  T  L  I  V  V  S  I  S  F  C  L  *  E  T  L  I  H  I  K  E  Y  Y  K  D  S  I  L  Y  S  N  H  H  F  F  L  V  L  I  H  S  R  R  R  L  I  C  P  F  H  F  S  F  F  F  K  Y  P  L  F  K  T  L  P  L  R  W  L  L  Y  H  P  Y  L  N  L  N  P  F  W  R  N  L  S  L  Q  F  *  T  S  L  K  I  S  F  F  Q  Y  P  F  Q  D  S  L  K  V  V  I  F  L  *  K  N  Q  G  W  W  L  F  Q  Q  Q  L  L  L  R  N  Q  I  R  G  I  L  V  R  L  R  G  L  W  R  K  *  G  L  W  L  *  S  C  I  L  R  T  R  L  R  K  G  K  K  S  L  *  I  S  L  W  P  S  G  S  L  V  L  K  G  T  *  S  S  W  W  I  A  N  W  F  M  I  L  W  K  E  L  W  K  R  L  L  F  L  S  :  M  L  S  S  G  I  Q  D  *  K  G  L  R  F  *  Q  R  I  W  N  G  L  G  S  R  V  M  P  S  R  N  H  Q  L  L  V  S  P  M  L  V  T  *  R  S  Y  Q  K  R  I  L  K  H  L  F  A  I  F  T  T  P  T  L  L  I  Q  L  E  A  A  *  *  G  K  R :   *  L  K  R  Y  L  T  R  K  S  W  N  S  T  N  G  T  A  I  F  L  S  C  C  R  M  L  G  I  S  *  T  K  L  Q  K :   T  G  L  E  R  R  R  I  I  V  W  K  R  Q  R  S  H  S  S  S  P  G  P  F  S  V  *  Y  F  L  D  A  Q  L  C  A  L  F  P  R  F  N  L  Y  I  G  W  L  K  G  Q  I  S  L  N  I  C  V  P  F  H  F  L  S  V  Y  V  V  *  E  L  D  Y  K  *  V  L  H  H  Y  S  :  P  K  K  N  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33282" stop="33801"/>
                    <exon start="34927" stop="35150"/>
                    <exon start="36019" stop="36126"/>
                    <exon start="36255" stop="36347"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSSLLSCSNPFKKKVNLSFSLLFFFQIPFVQDSSFKMASISPLSQSQPLLEKPQFTVLNKSQNQFFSIPFSRFTQSCNLSLKKSRMVVVSATTAAEKSNKRYPGEAKGFVEEMRFVAMKLHTKDQAKEGEKEPVDQPLAKWEPSVEGYLKFLVDSKLVYDTLERIVEKAPFPEYAEFRNTGLERSEVLAKDLEWFRQQGHAIPEPSTPGVTYASYLEELSEKDPQAFICHFYNTYFAHSAGGRMIGKKVAEKVLDKKELEFYKWDGDLSQLLQNVRDKLNKVAENWTREEKNHCLEETEKSFKFSGAILRLIFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="33113" e_stop="33801"/>
            <exon e_start="34927" e_stop="35150"/>
            <exon e_start="36019" e_stop="36126"/>
            <exon e_start="36255" e_stop="36493"/>
            <exon e_start="36686" e_stop="36702"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.988" e_score="0.991"/>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="0.978"/>
          <exon-intron don_prob="0.993" acc_prob="0.188" e_score="0.974"/>
          <exon-intron don_prob="0.000" acc_prob="0.801" e_score="0.895"/>
          <exon-only e_score="0.706"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="33113" e_stop="33801" e_length="689"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.988">
            <gDNA_intron_boundary i_start="33802" i_stop="34926" i_length="1125"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="34927" e_stop="35150" e_length="224"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="35151" i_stop="36018" i_length="868"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="36019" e_stop="36126" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.188">
            <gDNA_intron_boundary i_start="36127" i_stop="36254" i_length="128"/>
          </intron>
          <exon e_serial="4" e_score="0.895">
            <gDNA_exon_boundary e_start="36255" e_stop="36493" e_length="239"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.801">
            <gDNA_intron_boundary i_start="36494" i_stop="36685" i_length="192"/>
          </intron>
          <exon e_serial="5" e_score="0.706">
            <gDNA_exon_boundary e_start="36686" e_stop="36702" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33113" stop="33801"/>
              <exon start="34927" stop="34985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33178" stop="33577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33261" stop="33801"/>
              <exon start="34927" stop="35138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33261" stop="33776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33264" stop="33801"/>
              <exon start="34927" stop="35117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33328" stop="33776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33339" stop="33578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33615" stop="33801"/>
              <exon start="34927" stop="35150"/>
              <exon start="36019" stop="36126"/>
              <exon start="36255" stop="36387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36049" stop="36126"/>
              <exon start="36255" stop="36493"/>
              <exon start="36686" stop="36702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609897" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAATTTGAAAAACTTCCCATAAATTCCATTAAAAAACAATCATTTTTATATTCATTTTTCTACATATTTCATCATATAGATACACTGATTGTTGTATCTATTAGCTTTTGCTTGTAAGAAACCCTTATACACATTAAAGAATACTATAAAGATTCAATTTTGTATAGCAATCATCACTTCTTTCTTGTTCTAATCCATTCAAGAAGAAGGTTAATCTGTCCTTTTCACTTCTCTTTTTTTTTCAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATATCACCCTTATCTCAATCTCAACCCCTTTTGGAGAAACCTCAGTTTACAGTTTTGAACAAGTCTCAAAATCAGTTTTTTTCAATACCCTTTTCAAGATTCACTCAAAGTTGTAATCTTTCTTTGAAAAAATCAAGGATGGTGGTTGTTTCAGCAACAACTGCTGCTGAGAAATCAAATAAGAGGTATCCTGGTGAGGCTAAGGGGTTTGTGGAGGAAATGAGGTTTGTGGCTATGAAGTTGCATACTAAGGACCAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCCAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAGAATTGTGGAAAAGGCTCCTTTTCCTGAGT : ATGCTGAGTTCAGGAATACAGGATTAGAAAGGTCTGAGGTTCTAGCAAAGGATTTGGAATGGTTTAGGCAGCAGGGTCATGCCATCCCGGAACCATCAACTCCTGGTGTCACCTATGCTAGTTACTTAGAGGAGCTATCAGAAAAGGATCCTCAAGCATTTATTTGCCATTTTTACAACACCTACTTTGCTCATTCAGCTGGAGGCCGCATGATAGGGAAAAAG : GTAGCTGAAAAGGTACTTGACAAGAAAGAGCTGGAATTCTACAAATGGGACGGCGATCTTTCTCAGCTGCTGCAGAATGTTAGGGATAAGCTGAACAAAGTTGCAGAA : AACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTTTCTTGATGCACAACTTTGCGCTTTGTTTCCTCGTTTTAACTTGTACATTGGATGGTTGAAAGGTCAAATTTCTTTGAATATTTGTGTTCCTTTTCACTTTCTTTCTGTCTATGTTGTGTAAGAACTTGATTATAAATAAGTGCTACATCATT : CCAAAAAAAAATGCAAA</gDNA_template>
            <first_frame> *  N  L  K  N  F  P  *  I  P  L  K  N  N  H  F  Y  I  H  F  S  T  Y  F  I  I  *  I  H  *  L  L  Y  L  L  A  F  A  C  K  K  P  L  Y  T  L  K  N  T  I  K  I  Q  F  C  I  A  I  I  T  S  F  L  F  *  S  I  Q  E  E  G  *  S  V  L  F  T  S  L  F  F  S  N  T  L  C  S  R  L  F  L  *  D  G  F  Y  I  T  L  I  S  I  S  T  P  F  G  E  T  S  V  Y  S  F  E  Q  V  S  K  S  V  F  F  N  T  L  F  K  I  H  S  K  L  *  S  F  F  E  K  I  K  D  G  G  C  F  S  N  N  C  C  *  E  I  K  *  E  V  S  W  *  G  *  G  V  C  G  G  N  E  V  C  G  Y  E  V  A  Y  *  G  P  G  *  G  R  G  K  R  A  C  R  S  A  F  G  Q  V  G  A  *  C  *  R  V  L  E  V  L  G  G  *  Q  I  G  L  *  Y  F  G  K  N  C  G  K  G  S  F  S  *  V :   C  *  V  Q  E  Y  R  I  R  K  V  *  G  S  S  K  G  F  G  M  V  *  A  A  G  S  C  H  P  G  T  I  N  S  W  C  H  L  C  *  L  L  R  G  A  I  R  K  G  S  S  S  I  Y  L  P  F  L  Q  H  L  L  C  S  F  S  W  R  P  H  D  R  E  K   : G  S  *  K  G  T  *  Q  E  R  A  G  I  L  Q  M  G  R  R  S  F  S  A  A  A  E  C  *  G  *  A  E  Q  S  C  R   : K  L  D  *  R  G  E  E  S  L  S  G  R  D  R  E  V  I  Q  V  L  R  G  H  S  P  F  D  I  F  L  M  H  N  F  A  L  C  F  L  V  L  T  C  T  L  D  G  *  K  V  K  F  L  *  I  F  V  F  L  F  T  F  F  L  S  M  L  C  K  N  L  I  I  N  K  C  Y  I  I  :  P  K  K  N  A   </first_frame>
            <second_frame>  E  I  *  K  T  S  H  K  F  H  *  K  T  I  I  F  I  F  I  F  L  H  I  S  S  Y  R  Y  T  D  C  C  I  Y  *  L  L  L  V  R  N  P  Y  T  H  *  R  I  L  *  R  F  N  F  V  *  Q  S  S  L  L  S  C  S  N  P  F  K  K  K  V  N  L  S  F  S  L  L  F  F  F  Q  I  P  F  V  Q  D  S  S  F  K  M  A  S  I  S  P  L  S  Q  S  Q  P  L  L  E  K  P  Q  F  T  V  L  N  K  S  Q  N  Q  F  F  S  I  P  F  S  R  F  T  Q  S  C  N  L  S  L  K  K  S  R  M  V  V  V  S  A  T  T  A  A  E  K  S  N  K  R  Y  P  G  E  A  K  G  F  V  E  E  M  R  F  V  A  M  K  L  H  T  K  D  Q  A  K  E  G  E  K  E  P  V  D  Q  P  L  A  K  W  E  P  S  V  E  G  Y  L  K  F  L  V  D  S  K  L  V  Y  D  T  L  E  R  I  V  E  K  A  P  F  P  E   : Y  A  E  F  R  N  T  G  L  E  R  S  E  V  L  A  K  D  L  E  W  F  R  Q  Q  G  H  A  I  P  E  P  S  T  P  G  V  T  Y  A  S  Y  L  E  E  L  S  E  K  D  P  Q  A  F  I  C  H  F  Y  N  T  Y  F  A  H  S  A  G  G  R  M  I  G  K  K  :  V  A  E  K  V  L  D  K  K  E  L  E  F  Y  K  W  D  G  D  L  S  Q  L  L  Q  N  V  R  D  K  L  N  K  V  A  E  :  N  W  T  R  E  E  K  N  H  C  L  E  E  T  E  K  S  F  K  F  S  G  A  I  L  R  L  I  F  S  *  C  T  T  L  R  F  V  S  S  F  *  L  V  H  W  M  V  E  R  S  N  F  F  E  Y  L  C  S  F  S  L  S  F  C  L  C  C  V  R  T  *  L  *  I  S  A  T  S  F :   Q  K  K  M  Q  </second_frame>
            <third_frame>   K  F  E  K  L  P  I  N  S  I  K  K  Q  S  F  L  Y  S  F  F  Y  I  F  H  H  I  D  T  L  I  V  V  S  I  S  F  C  L  *  E  T  L  I  H  I  K  E  Y  Y  K  D  S  I  L  Y  S  N  H  H  F  F  L  V  L  I  H  S  R  R  R  L  I  C  P  F  H  F  S  F  F  F  K  Y  P  L  F  K  T  L  P  L  R  W  L  L  Y  H  P  Y  L  N  L  N  P  F  W  R  N  L  S  L  Q  F  *  T  S  L  K  I  S  F  F  Q  Y  P  F  Q  D  S  L  K  V  V  I  F  L  *  K  N  Q  G  W  W  L  F  Q  Q  Q  L  L  L  R  N  Q  I  R  G  I  L  V  R  L  R  G  L  W  R  K  *  G  L  W  L  *  S  C  I  L  R  T  R  L  R  K  G  K  K  S  L  *  I  S  L  W  P  S  G  S  L  V  L  K  G  T  *  S  S  W  W  I  A  N  W  F  M  I  L  W  K  E  L  W  K  R  L  L  F  L  S  :  M  L  S  S  G  I  Q  D  *  K  G  L  R  F  *  Q  R  I  W  N  G  L  G  S  R  V  M  P  S  R  N  H  Q  L  L  V  S  P  M  L  V  T  *  R  S  Y  Q  K  R  I  L  K  H  L  F  A  I  F  T  T  P  T  L  L  I  Q  L  E  A  A  *  *  G  K  R :   *  L  K  R  Y  L  T  R  K  S  W  N  S  T  N  G  T  A  I  F  L  S  C  C  R  M  L  G  I  S  *  T  K  L  Q  K :   T  G  L  E  R  R  R  I  I  V  W  K  R  Q  R  S  H  S  S  S  P  G  P  F  S  V  *  Y  F  L  D  A  Q  L  C  A  L  F  P  R  F  N  L  Y  I  G  W  L  K  G  Q  I  S  L  N  I  C  V  P  F  H  F  L  S  V  Y  V  V  *  E  L  D  Y  K  *  V  L  H  H   : S  K  K  K  C  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33282" stop="33801"/>
                    <exon start="34927" stop="35150"/>
                    <exon start="36019" stop="36126"/>
                    <exon start="36255" stop="36347"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSSLLSCSNPFKKKVNLSFSLLFFFQIPFVQDSSFKMASISPLSQSQPLLEKPQFTVLNKSQNQFFSIPFSRFTQSCNLSLKKSRMVVVSATTAAEKSNKRYPGEAKGFVEEMRFVAMKLHTKDQAKEGEKEPVDQPLAKWEPSVEGYLKFLVDSKLVYDTLERIVEKAPFPEYAEFRNTGLERSEVLAKDLEWFRQQGHAIPEPSTPGVTYASYLEELSEKDPQAFICHFYNTYFAHSAGGRMIGKKVAEKVLDKKELEFYKWDGDLSQLLQNVRDKLNKVAENWTREEKNHCLEETEKSFKFSGAILRLIFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="50828" PGL_stop="47537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50828" e_stop="50674"/>
            <exon e_start="49494" e_stop="49394"/>
            <exon e_start="48956" e_stop="48893"/>
            <exon e_start="48173" e_stop="48077"/>
            <exon e_start="47963" e_stop="47537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.954" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50828" e_stop="50674" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.954" acc_prob="0.980">
            <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49494" e_stop="49394" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.991">
            <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48956" e_stop="48893" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.868" acc_prob="0.993">
            <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48173" e_stop="48077" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="47963" e_stop="47537" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50828" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50823" stop="50674"/>
              <exon start="49494" stop="49446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50813" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50806" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50792" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50792" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50792" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50792" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50789" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50786" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50786" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50783" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50781" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50781" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50771" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50757" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617112" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50752" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48956" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48917" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280407" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48167" stop="48077"/>
              <exon start="47963" stop="47720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48149" stop="48077"/>
              <exon start="47963" stop="47537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACCTGAGGTTACATGTTTTTGTTAAAACCAACACAATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAG : GTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG : GCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATG : GTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAG : AGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTACCTTCCCTGTCACATATATTTATTCATGATTCGTGTAAAAAGTACTGAGTTCAGTTGAACCTGTAGCCATTGACGCCGAGAAAAGCACAAGGGCTTCATTTTGAGAACAAGCACATGTAAAGACTATTTGTATAACCAAATATGCACCTAAAAATGTCATATCAGCCATGGATGAGAGTTAAA</gDNA_template>
            <first_frame> *  P  E  V  T  C  F  C  *  N  Q  H  N  F  G  K  F  S  L  I  K  F  K  K  K  *  V  K  F  N  C  F  N  G  K  F  S  V  F  H  P  Y  S  F  I  E  L  F  Q  *  T  R :   F  N  *  S  K  W  E  L  R  W  K  K  D  S  I  D  Q  R  C  N  L  Q  L  Q  E  *  L  K  S  R  R  S  E   : G  R  *  Q  *  *  R  N  K  S  K  E  H  S  L  S  K  V  *  W  K  W :   C  S  G  V  L  T  M  *  R  R  W  G  *  L  R  R  S  F  Q  R  T  V  *  S  R  W  T  M  L  A  V  Q  :  R  *  E  R  Y  I  V  W  *  L  Q  W  C  W  I  S  W  W  I  Y  E  Y  V  R  *  V  D  F  R  C  T  G  L  E  *  T  R  R  Q  V  E  A  G  S  E  A  D  P  E  F  K  L  D  E  F  S  F  Y  N  S  P  Y  *  S  H  C  T  C  E  I  M  I  S  *  F  D  I  C  S  N  F  T  F  P  V  T  Y  I  Y  S  *  F  V  *  K  V  L  S  S  V  E  P  V  A  I  D  A  E  K  S  T  R  A  S  F  *  E  Q  A  H  V  K  T  I  C  I  T  K  Y  A  P  K  N  V  I  S  A  M  D  E  S  *  </first_frame>
            <second_frame>  N  L  R  L  H  V  F  V  K  T  N  T  I  L  A  N  F  L  *  L  N  S  K  K  N  K  *  N  S  T  V  L  M  A  N  S  L  C  F  T  P  I  A  S  L  N  S  F  N  K  P   : G  L  I  N  R  N  G  N  C  A  G  R  K  I  Q  L  I  K  D  V  T  F  N  S  K  S  N  L  R  V  V  E  V  K  :  A  A  D  S  D  K  E  T  K  V  K  S  I  V  C  Q  K  C  D  G  N   : G  A  V  A  C  S  Q  C  K  G  A  G  V  N  S  V  D  H  F  N  G  R  F  K  A  G  G  L  C  W  L  C  R :   G  K  K  D  I  L  C  G  D  C  N  G  A  G  F  L  G  G  F  M  S  T  F  D  E  *  T  S  D  A  L  V  S  S  R  L  G  G  R  *  R  Q  V  Q  R  Q  I  R  N  L  N  L  M  S  S  V  S  I  I  L  R  I  E  V  I  V  L  V  K  L  *  F  H  N  L  I  F  V  Q  T  L  P  S  L  S  H  I  F  I  H  D  S  C  K  K  Y  *  V  Q  L  N  L  *  P  L  T  P  R  K  A  Q  G  L  H  F  E  N  K  H  M  *  R  L  F  V  *  P  N  M  H  L  K  M  S  Y  Q  P  W  M  R  V  K </second_frame>
            <third_frame>   T  *  G  Y  M  F  L  L  K  P  T  Q  F  W  Q  I  F  S  D  *  I  Q  K  K  I  S  E  I  Q  L  F  *  W  Q  I  L  C  V  S  P  L  *  L  H  *  T  L  S  I  N  Q  :  V  *  L  I  E  M  G  I  A  L  E  E  R  F  N  *  S  K  M  *  P  S  T  P  R  V  T  *  E  S  *  K  *  R :   P  L  T  V  I  K  K  Q  K  *  R  A  *  S  V  K  S  V  M  E  M  :  V  Q  W  R  A  H  N  V  K  A  L  G  L  T  P  S  I  I  S  T  D  G  L  K  P  V  D  Y  V  G  C  A   : E  V  R  K  I  Y  C  V  V  I  A  M  V  L  D  F  L  V  D  L  *  V  R  S  M  S  R  L  Q  M  H  W  S  R  V  D  S  E  A  G  R  G  R  F  R  G  R  S  G  I  *  T  *  *  V  Q  F  L  *  F  S  V  L  K  S  L  Y  L  *  N  Y  D  F  I  I  *  Y  L  F  K  L  Y  L  P  C  H  I  Y  L  F  M  I  R  V  K  S  T  E  F  S  *  T  C  S  H  *  R  R  E  K  H  K  G  F  I  L  R  T  S  T  C  K  D  Y  L  Y  N  Q  I  C  T  *  K  C  H  I  S  H  G  *  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50746" stop="50674"/>
                    <exon start="49494" stop="49394"/>
                    <exon start="48956" stop="48893"/>
                    <exon start="48173" stop="48077"/>
                    <exon start="47963" stop="47885"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSTVLMANSLCFTPIASLNSFNKPGLINRNGNCAGRKIQLIKDVTFNSKSNLRVVEVKAADSDKETKVKSIVCQKCDGNGAVACSQCKGAGVNSVDHFNGRFKAGGLCWLCRGKKDILCGDCNGAGFLGGFMSTFDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49307" e_stop="48893"/>
            <exon e_start="48173" e_stop="48077"/>
            <exon e_start="47963" e_stop="47537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.868" acc_prob="0.993" e_score="0.870"/>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.870">
            <gDNA_exon_boundary e_start="49307" e_stop="48893" e_length="415"/>
          </exon>
          <intron i_serial="1" don_prob="0.868" acc_prob="0.993">
            <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48173" e_stop="48077" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="47963" e_stop="47537" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49307" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436051" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48956" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48917" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280407" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48167" stop="48077"/>
              <exon start="47963" stop="47720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48149" stop="48077"/>
              <exon start="47963" stop="47537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATG : GTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAG : AGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTACCTTCCCTGTCACATATATTTATTCATGATTCGTGTAAAAAGTACTGAGTTCAGTTGAACCTGTAGCCATTGACGCCGAGAAAAGCACAAGGGCTTCATTTTGAGAACAAGCACATGTAAAGACTATTTGTATAACCAAATATGCACCTAAAAATGTCATATCAGCCATGGATGAGAGTTAAA</gDNA_template>
            <first_frame> R  F  T  E  I  *  H  N  M  W  *  H  L  H  Q  S  S  Y  S  I  H  H  S  I  L  C  K  T  G  S  S  S  I  I  S  F  A  T  R  I  S  M  P  F  L  I  C  Y  K  S  N  R  E  V  R  K  D  E  N  P  K  L  N  T  T  C  Y  H  K  G  L  L  E  F  Y  R  N  F  S  L  L  Q  K  F  H  F  T  S  F  M  I  *  L  Y  H  I  F  F  Y  F  V  E  L  A  V  F  F  Q  R  L  T  L  Y  S  F  F  *  A  A  D  S  D  K  E  T  K  V  K  S  I  V  C  Q  K  C  D  G  N   : G  A  V  A  C  S  Q  C  K  G  A  G  V  N  S  V  D  H  F  N  G  R  F  K  A  G  G  L  C  W  L  C  R :   G  K  K  D  I  L  C  G  D  C  N  G  A  G  F  L  G  G  F  M  S  T  F  D  E  *  T  S  D  A  L  V  S  S  R  L  G  G  R  *  R  Q  V  Q  R  Q  I  R  N  L  N  L  M  S  S  V  S  I  I  L  R  I  E  V  I  V  L  V  K  L  *  F  H  N  L  I  F  V  Q  T  L  P  S  L  S  H  I  F  I  H  D  S  C  K  K  Y  *  V  Q  L  N  L  *  P  L  T  P  R  K  A  Q  G  L  H  F  E  N  K  H  M  *  R  L  F  V  *  P  N  M  H  L  K  M  S  Y  Q  P  W  M  R  V  K </first_frame>
            <second_frame>  D  L  R  K  S  D  I  I  C  G  S  I  C  I  N  H  H  I  Q  F  I  T  L  F  Y  V  K  R  D  Q  A  A  *  F  H  S  Q  Q  G  S  L  C  R  F  *  F  V  I  N  Q  I  G  K  F  V  K  M  K  I  L  S  L  I  L  P  V  I  T  R  A  Y  L  S  S  I  E  T  S  V  C  S  R  N  F  I  S  P  L  L  *  S  D  C  T  I  F  S  S  I  S  L  S  W  L  Y  F  S  R  D  *  H  Y  T  L  F  F  R  P  L  T  V  I  K  K  Q  K  *  R  A  *  S  V  K  S  V  M  E  M  :  V  Q  W  R  A  H  N  V  K  A  L  G  L  T  P  S  I  I  S  T  D  G  L  K  P  V  D  Y  V  G  C  A   : E  V  R  K  I  Y  C  V  V  I  A  M  V  L  D  F  L  V  D  L  *  V  R  S  M  S  R  L  Q  M  H  W  S  R  V  D  S  E  A  G  R  G  R  F  R  G  R  S  G  I  *  T  *  *  V  Q  F  L  *  F  S  V  L  K  S  L  Y  L  *  N  Y  D  F  I  I  *  Y  L  F  K  L  Y  L  P  C  H  I  Y  L  F  M  I  R  V  K  S  T  E  F  S  *  T  C  S  H  *  R  R  E  K  H  K  G  F  I  L  R  T  S  T  C  K  D  Y  L  Y  N  Q  I  C  T  *  K  C  H  I  S  H  G  *  E  L   </second_frame>
            <third_frame>   I  Y  G  N  L  T  *  Y  V  V  A  S  A  S  I  I  I  F  N  S  S  L  Y  F  M  *  N  G  I  K  Q  H  N  F  I  R  N  K  D  L  Y  A  V  S  N  L  L  *  I  K  *  G  S  S  *  R  *  K  S  *  A  *  Y  Y  L  L  S  Q  G  L  T  *  V  L  *  K  L  Q  F  A  P  E  I  S  F  H  L  F  Y  D  L  T  V  P  Y  F  L  L  F  R  *  V  G  C  I  F  P  E  I  D  T  I  L  F  F  L  G  R  *  Q  *  *  R  N  K  S  K  E  H  S  L  S  K  V  *  W  K  W :   C  S  G  V  L  T  M  *  R  R  W  G  *  L  R  R  S  F  Q  R  T  V  *  S  R  W  T  M  L  A  V  Q  :  R  *  E  R  Y  I  V  W  *  L  Q  W  C  W  I  S  W  W  I  Y  E  Y  V  R  *  V  D  F  R  C  T  G  L  E  *  T  R  R  Q  V  E  A  G  S  E  A  D  P  E  F  K  L  D  E  F  S  F  Y  N  S  P  Y  *  S  H  C  T  C  E  I  M  I  S  *  F  D  I  C  S  N  F  T  F  P  V  T  Y  I  Y  S  *  F  V  *  K  V  L  S  S  V  E  P  V  A  I  D  A  E  K  S  T  R  A  S  F  *  E  Q  A  H  V  K  T  I  C  I  T  K  Y  A  P  K  N  V  I  S  A  M  D  E  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49274" stop="49032"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLHQSSYSIHHSILCKTGSSSIISFATRISMPFLICYKSNREVRKDENPKLNTTCYHKGLLEFYRNFSLLQKFHFTSFMI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48956" stop="48893"/>
                    <exon start="48173" stop="48077"/>
                    <exon start="47963" stop="47885"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AADSDKETKVKSIVCQKCDGNGAVACSQCKGAGVNSVDHFNGRFKAGGLCWLCRGKKDILCGDCNGAGFLGGFMSTFDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="50823" e_stop="50674"/>
            <exon e_start="49494" e_stop="49394"/>
            <exon e_start="48956" e_stop="48893"/>
            <exon e_start="48671" e_stop="48667"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.954" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.787" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50823" e_stop="50674" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.954" acc_prob="0.980">
            <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49494" e_stop="49394" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.991">
            <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48956" e_stop="48893" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.868" acc_prob="0.787">
            <gDNA_intron_boundary i_start="48892" i_stop="48672" i_length="221"/>
          </intron>
          <exon e_serial="4" e_score="0.800">
            <gDNA_exon_boundary e_start="48671" e_stop="48667" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50823" stop="50674"/>
              <exon start="49494" stop="49446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50799" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48893"/>
              <exon start="48671" stop="48667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278355" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50792" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50781" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295992" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAGGTTACATGTTTTTGTTAAAACCAACACAATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAG : GTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG : GCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATG : GTTCA</gDNA_template>
            <first_frame> *  G  Y  M  F  L  L  K  P  T  Q  F  W  Q  I  F  S  D  *  I  Q  K  K  I  S  E  I  Q  L  F  *  W  Q  I  L  C  V  S  P  L  *  L  H  *  T  L  S  I  N  Q  :  V  *  L  I  E  M  G  I  A  L  E  E  R  F  N  *  S  K  M  *  P  S  T  P  R  V  T  *  E  S  *  K  *  R :   P  L  T  V  I  K  K  Q  K  *  R  A  *  S  V  K  S  V  M  E  M  :  V   </first_frame>
            <second_frame>  E  V  T  C  F  C  *  N  Q  H  N  F  G  K  F  S  L  I  K  F  K  K  K  *  V  K  F  N  C  F  N  G  K  F  S  V  F  H  P  Y  S  F  I  E  L  F  Q  *  T  R :   F  N  *  S  K  W  E  L  R  W  K  K  D  S  I  D  Q  R  C  N  L  Q  L  Q  E  *  L  K  S  R  R  S  E   : G  R  *  Q  *  *  R  N  K  S  K  E  H  S  L  S  K  V  *  W  K  W :   F  </second_frame>
            <third_frame>   R  L  H  V  F  V  K  T  N  T  I  L  A  N  F  L  *  L  N  S  K  K  N  K  *  N  S  T  V  L  M  A  N  S  L  C  F  T  P  I  A  S  L  N  S  F  N  K  P   : G  L  I  N  R  N  G  N  C  A  G  R  K  I  Q  L  I  K  D  V  T  F  N  S  K  S  N  L  R  V  V  E  V  K  :  A  A  D  S  D  K  E  T  K  V  K  S  I  V  C  Q  K  C  D  G  N   : G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50746" stop="50674"/>
                    <exon start="49494" stop="49394"/>
                    <exon start="48956" stop="48893"/>
                    <exon start="48671" stop="48667"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSTVLMANSLCFTPIASLNSFNKPGLINRNGNCAGRKIQLIKDVTFNSKSNLRVVEVKAADSDKETKVKSIVCQKCDGNGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="57503" PGL_stop="55417"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57503" e_stop="56836"/>
            <exon e_start="56023" e_stop="55417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="57503" e_stop="56836" e_length="668"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="56835" i_stop="56024" i_length="812"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56023" e_stop="55417" e_length="607"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57503" stop="56930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57472" stop="56924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56941" stop="56836"/>
              <exon start="56023" stop="55417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345568" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTTTCACTTCAATTCAAGATCCAATCTTTTTTCTCAAATTTCTTCAAAAAAAAAGTGAGTTTTCCATGGCAAATTCATGGAGAAGAAACCAACAAATCAAGATCTTCACCCCCAAGAATCTCCTTCTCTTTTTCTTCACTTCTCTTCTCCTCCTTATTTTCCTCTATCTCACATCACAAACCCAACCCCACAATCCAAAACCCCTCAAATCTATTAAAAATCCAATCTTTAATCTCCCCATAAAGCCATTTGATTGTTACAATTCACCTCAAGCTTACCCTGTTATAGCTAGTGTAGTTGAAGGTGTGAAATACCCTTTTCTTTTTTCACTTTCAGATTTTGGGAATTTGCCTGAAAAACCTCATAAGAATATTCAGAGGGTACTTAAAGGAAAACCCTTTAGAAAGCCTGATATATCTGTGACTCTGCAAGAATTGTTGGAAAAGATGAAGGGTAAAAATGGGATTTTTTTGGATGTTGGAGCTAATGTAGGAATGGCTACTTTTGCTGCTGCTGTAATGGGGTTTAAAGTTTTGGCCTTTGAACCTGTTTTTGAGAATTTGCAGAAAATTTGTGAAGGTATTTACTTTAATAGAGTTGGAGAGTTGGTTGAGGTTTATGAAGCAGCTGTCTCTGATCATAATGGGAATATTACCTTTCACAAG : TTGGTTGGTAGACTTGACAATAGTGCAGTATCTGCCACCGGTGCCAAGTTGGCTTTTAAGTCAAATGAAGAGATTGAAGTTCAAGTAAAAACTATTCCTCTTGATGAGGTTATCCAAGAAACGGAGCGTGTACTACTGATAAAGATAGATGTTCAAGGTTGGGAGTATCATGTACTTAAGGGAGCATCAAAGTTATTGTCAAGGAAGAAAGGTGAAGCACCTTACCTGATCTACGAGGAAGATGAGCGATTGTTGCAAGCCAGCAATAGCAGTGCTAAGGAAATCCGGGAGTTTCTACAGAGTGTGGGTTACAACCATTGCACTCAACATGGTACAGATGCACACTGCACAAAAACAGATTGAGAAGGTTATCATCTACAAATAATCTTCTGCTACAACTCTGGAAGGAGCATCAATTCTTAAAAATTTTAAAATATTTGCTATACACCGATTTAAACAATCAACTATCATGTTTTTTTGGGTGCTATAAGCTTAGAATGATTGGTATAGAACAAAACCTGATGCGACAGTTGTTCAAAGTCGAGCTCTACTTTTTTCAGTTCGTATGAATTGGAAGGCTGACTGATACCATGTTGAGGGGATTATG</gDNA_template>
            <first_frame> K  V  S  L  Q  F  K  I  Q  S  F  F  S  N  F  F  K  K  K  V  S  F  P  W  Q  I  H  G  E  E  T  N  K  S  R  S  S  P  P  R  I  S  F  S  F  S  S  L  L  F  S  S  L  F  S  S  I  S  H  H  K  P  N  P  T  I  Q  N  P  S  N  L  L  K  I  Q  S  L  I  S  P  *  S  H  L  I  V  T  I  H  L  K  L  T  L  L  *  L  V  *  L  K  V  *  N  T  L  F  F  F  H  F  Q  I  L  G  I  C  L  K  N  L  I  R  I  F  R  G  Y  L  K  E  N  P  L  E  S  L  I  Y  L  *  L  C  K  N  C  W  K  R  *  R  V  K  M  G  F  F  W  M  L  E  L  M  *  E  W  L  L  L  L  L  L  *  W  G  L  K  F  W  P  L  N  L  F  L  R  I  C  R  K  F  V  K  V  F  T  L  I  E  L  E  S  W  L  R  F  M  K  Q  L  S  L  I  I  M  G  I  L  P  F  T  S :   W  L  V  D  L  T  I  V  Q  Y  L  P  P  V  P  S  W  L  L  S  Q  M  K  R  L  K  F  K  *  K  L  F  L  L  M  R  L  S  K  K  R  S  V  Y  Y  *  *  R  *  M  F  K  V  G  S  I  M  Y  L  R  E  H  Q  S  Y  C  Q  G  R  K  V  K  H  L  T  *  S  T  R  K  M  S  D  C  C  K  P  A  I  A  V  L  R  K  S  G  S  F  Y  R  V  W  V  T  T  I  A  L  N  M  V  Q  M  H  T  A  Q  K  Q  I  E  K  V  I  I  Y  K  *  S  S  A  T  T  L  E  G  A  S  I  L  K  N  F  K  I  F  A  I  H  R  F  K  Q  S  T  I  M  F  F  W  V  L  *  A  *  N  D  W  Y  R  T  K  P  D  A  T  V  V  Q  S  R  A  L  L  F  S  V  R  M  N  W  K  A  D  *  Y  H  V  E  G  I  M </first_frame>
            <second_frame>  K  F  H  F  N  S  R  S  N  L  F  S  Q  I  S  S  K  K  K  *  V  F  H  G  K  F  M  E  K  K  P  T  N  Q  D  L  H  P  Q  E  S  P  S  L  F  L  H  F  S  S  P  P  Y  F  P  L  S  H  I  T  N  P  T  P  Q  S  K  T  P  Q  I  Y  *  K  S  N  L  *  S  P  H  K  A  I  *  L  L  Q  F  T  S  S  L  P  C  Y  S  *  C  S  *  R  C  E  I  P  F  S  F  F  T  F  R  F  W  E  F  A  *  K  T  S  *  E  Y  S  E  G  T  *  R  K  T  L  *  K  A  *  Y  I  C  D  S  A  R  I  V  G  K  D  E  G  *  K  W  D  F  F  G  C  W  S  *  C  R  N  G  Y  F  C  C  C  C  N  G  V  *  S  F  G  L  *  T  C  F  *  E  F  A  E  N  L  *  R  Y  L  L  *  *  S  W  R  V  G  *  G  L  *  S  S  C  L  *  S  *  W  E  Y  Y  L  S  Q   : V  G  W  *  T  *  Q  *  C  S  I  C  H  R  C  Q  V  G  F  *  V  K  *  R  D  *  S  S  S  K  N  Y  S  S  *  *  G  Y  P  R  N  G  A  C  T  T  D  K  D  R  C  S  R  L  G  V  S  C  T  *  G  S  I  K  V  I  V  K  E  E  R  *  S  T  L  P  D  L  R  G  R  *  A  I  V  A  S  Q  Q  *  Q  C  *  G  N  P  G  V  S  T  E  C  G  L  Q  P  L  H  S  T  W  Y  R  C  T  L  H  K  N  R  L  R  R  L  S  S  T  N  N  L  L  L  Q  L  W  K  E  H  Q  F  L  K  I  L  K  Y  L  L  Y  T  D  L  N  N  Q  L  S  C  F  F  G  C  Y  K  L  R  M  I  G  I  E  Q  N  L  M  R  Q  L  F  K  V  E  L  Y  F  F  Q  F  V  *  I  G  R  L  T  D  T  M  L  R  G  L   </second_frame>
            <third_frame>   S  F  T  S  I  Q  D  P  I  F  F  L  K  F  L  Q  K  K  S  E  F  S  M  A  N  S  W  R  R  N  Q  Q  I  K  I  F  T  P  K  N  L  L  L  F  F  F  T  S  L  L  L  L  I  F  L  Y  L  T  S  Q  T  Q  P  H  N  P  K  P  L  K  S  I  K  N  P  I  F  N  L  P  I  K  P  F  D  C  Y  N  S  P  Q  A  Y  P  V  I  A  S  V  V  E  G  V  K  Y  P  F  L  F  S  L  S  D  F  G  N  L  P  E  K  P  H  K  N  I  Q  R  V  L  K  G  K  P  F  R  K  P  D  I  S  V  T  L  Q  E  L  L  E  K  M  K  G  K  N  G  I  F  L  D  V  G  A  N  V  G  M  A  T  F  A  A  A  V  M  G  F  K  V  L  A  F  E  P  V  F  E  N  L  Q  K  I  C  E  G  I  Y  F  N  R  V  G  E  L  V  E  V  Y  E  A  A  V  S  D  H  N  G  N  I  T  F  H  K  :  L  V  G  R  L  D  N  S  A  V  S  A  T  G  A  K  L  A  F  K  S  N  E  E  I  E  V  Q  V  K  T  I  P  L  D  E  V  I  Q  E  T  E  R  V  L  L  I  K  I  D  V  Q  G  W  E  Y  H  V  L  K  G  A  S  K  L  L  S  R  K  K  G  E  A  P  Y  L  I  Y  E  E  D  E  R  L  L  Q  A  S  N  S  S  A  K  E  I  R  E  F  L  Q  S  V  G  Y  N  H  C  T  Q  H  G  T  D  A  H  C  T  K  T  D  *  E  G  Y  H  L  Q  I  I  F  C  Y  N  S  G  R  S  I  N  S  *  K  F  *  N  I  C  Y  T  P  I  *  T  I  N  Y  H  V  F  L  G  A  I  S  L  E  *  L  V  *  N  K  T  *  C  D  S  C  S  K  S  S  S  T  F  F  S  S  Y  E  L  E  G  *  L  I  P  C  *  G  D  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57501" stop="56836"/>
                    <exon start="56023" stop="55661"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFTSIQDPIFFLKFLQKKSEFSMANSWRRNQQIKIFTPKNLLLFFFTSLLLLIFLYLTSQTQPHNPKPLKSIKNPIFNLPIKPFDCYNSPQAYPVIASVVEGVKYPFLFSLSDFGNLPEKPHKNIQRVLKGKPFRKPDISVTLQELLEKMKGKNGIFLDVGANVGMATFAAAVMGFKVLAFEPVFENLQKICEGIYFNRVGELVEVYEAAVSDHNGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIEVQVKTIPLDEVIQETERVLLIKIDVQGWEYHVLKGASKLLSRKKGEAPYLIYEEDERLLQASNSSAKEIREFLQSVGYNHCTQHGTDAHCTKTD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 218 chains have been computed
$ 
$ memory statistics:
$ 256584 bytes spliced alignments in total
$ 121 spliced alignments have been stored
$ 2120 bytes was the average size of a spliced alignment
$ 18320 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1832 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 240 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 22:08:27
-->
